Multiple sequence alignment - TraesCS2B01G538300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G538300 chr2B 100.000 3517 0 0 1 3517 733733147 733729631 0.000000e+00 6495.0
1 TraesCS2B01G538300 chr2B 88.402 1233 130 6 94 1325 733645903 733644683 0.000000e+00 1472.0
2 TraesCS2B01G538300 chr2B 89.832 1131 106 7 115 1240 733472858 733471732 0.000000e+00 1443.0
3 TraesCS2B01G538300 chr2B 88.349 1193 129 6 66 1251 733458589 733457400 0.000000e+00 1424.0
4 TraesCS2B01G538300 chr2B 88.938 1139 108 5 1544 2682 733843567 733842447 0.000000e+00 1389.0
5 TraesCS2B01G538300 chr2B 86.090 1294 169 10 94 1381 733715739 733714451 0.000000e+00 1382.0
6 TraesCS2B01G538300 chr2B 81.165 1322 210 19 1354 2672 733714601 733713316 0.000000e+00 1026.0
7 TraesCS2B01G538300 chr2B 81.036 1197 193 20 1409 2599 733643520 733642352 0.000000e+00 922.0
8 TraesCS2B01G538300 chr2B 82.316 967 153 15 1505 2468 733644656 733643705 0.000000e+00 822.0
9 TraesCS2B01G538300 chr2B 95.322 513 21 2 2788 3300 733841874 733841365 0.000000e+00 811.0
10 TraesCS2B01G538300 chr2B 89.130 506 39 8 2779 3272 733748973 733748472 1.790000e-172 616.0
11 TraesCS2B01G538300 chr2B 82.222 675 91 18 2022 2682 733750335 733749676 3.970000e-154 555.0
12 TraesCS2B01G538300 chr2B 90.286 350 29 3 2802 3151 733241687 733241343 1.490000e-123 453.0
13 TraesCS2B01G538300 chr2B 79.057 530 72 14 2739 3246 733468466 733467954 9.410000e-86 327.0
14 TraesCS2B01G538300 chr2B 80.392 255 27 6 2886 3140 733712666 733712435 4.670000e-39 172.0
15 TraesCS2B01G538300 chr2B 91.935 124 5 3 2685 2808 733281418 733281300 6.040000e-38 169.0
16 TraesCS2B01G538300 chr2B 76.399 411 40 28 2725 3120 733642120 733641752 6.040000e-38 169.0
17 TraesCS2B01G538300 chr2B 79.221 231 33 13 3157 3381 733641744 733641523 2.830000e-31 147.0
18 TraesCS2B01G538300 chr2B 83.553 152 16 7 3318 3469 733209537 733209395 2.200000e-27 134.0
19 TraesCS2B01G538300 chr2B 96.296 81 2 1 3309 3389 733199609 733199530 7.920000e-27 132.0
20 TraesCS2B01G538300 chr2B 97.917 48 1 0 3470 3517 53969471 53969518 2.250000e-12 84.2
21 TraesCS2B01G538300 chr2B 95.556 45 2 0 3473 3517 142399657 142399613 4.870000e-09 73.1
22 TraesCS2B01G538300 chr2B 92.157 51 1 3 2870 2918 733470187 733470138 6.300000e-08 69.4
23 TraesCS2B01G538300 chr2A 89.901 2624 231 23 70 2681 735446755 735444154 0.000000e+00 3347.0
24 TraesCS2B01G538300 chr2A 90.630 1825 152 12 1478 3301 735583771 735581965 0.000000e+00 2405.0
25 TraesCS2B01G538300 chr2A 90.331 1210 112 4 121 1327 735566732 735565525 0.000000e+00 1581.0
26 TraesCS2B01G538300 chr2A 89.223 1197 120 7 136 1327 735402734 735401542 0.000000e+00 1487.0
27 TraesCS2B01G538300 chr2A 83.470 1337 192 21 1354 2681 735406343 735405027 0.000000e+00 1218.0
28 TraesCS2B01G538300 chr2A 80.846 1253 215 17 1354 2599 735565622 735564388 0.000000e+00 961.0
29 TraesCS2B01G538300 chr2A 79.730 1258 221 24 1354 2599 735401639 735400404 0.000000e+00 880.0
30 TraesCS2B01G538300 chr2A 80.808 693 76 31 2725 3389 735564121 735563458 1.130000e-134 490.0
31 TraesCS2B01G538300 chr2A 86.667 150 12 5 3302 3451 735576491 735576350 3.630000e-35 159.0
32 TraesCS2B01G538300 chr2A 93.617 47 3 0 3471 3517 180112139 180112093 1.750000e-08 71.3
33 TraesCS2B01G538300 chr2D 90.084 1190 106 10 63 1243 603129570 603128384 0.000000e+00 1533.0
34 TraesCS2B01G538300 chr2D 90.370 1163 102 7 70 1224 602783365 602782205 0.000000e+00 1519.0
35 TraesCS2B01G538300 chr2D 81.472 1128 187 14 1478 2599 602782174 602781063 0.000000e+00 905.0
36 TraesCS2B01G538300 chr2D 82.025 395 41 15 2736 3120 602780785 602780411 3.410000e-80 309.0
37 TraesCS2B01G538300 chr2D 86.345 249 11 9 3157 3383 602780403 602780156 2.100000e-62 250.0
38 TraesCS2B01G538300 chr4B 100.000 41 0 0 3477 3517 73466595 73466635 3.760000e-10 76.8
39 TraesCS2B01G538300 chr7A 95.455 44 2 0 3474 3517 694115585 694115542 1.750000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G538300 chr2B 733729631 733733147 3516 True 6495.000000 6495 100.000000 1 3517 1 chr2B.!!$R7 3516
1 TraesCS2B01G538300 chr2B 733457400 733458589 1189 True 1424.000000 1424 88.349000 66 1251 1 chr2B.!!$R6 1185
2 TraesCS2B01G538300 chr2B 733841365 733843567 2202 True 1100.000000 1389 92.130000 1544 3300 2 chr2B.!!$R12 1756
3 TraesCS2B01G538300 chr2B 733712435 733715739 3304 True 860.000000 1382 82.549000 94 3140 3 chr2B.!!$R10 3046
4 TraesCS2B01G538300 chr2B 733641523 733645903 4380 True 706.400000 1472 81.474800 94 3381 5 chr2B.!!$R9 3287
5 TraesCS2B01G538300 chr2B 733467954 733472858 4904 True 613.133333 1443 87.015333 115 3246 3 chr2B.!!$R8 3131
6 TraesCS2B01G538300 chr2B 733748472 733750335 1863 True 585.500000 616 85.676000 2022 3272 2 chr2B.!!$R11 1250
7 TraesCS2B01G538300 chr2A 735444154 735446755 2601 True 3347.000000 3347 89.901000 70 2681 1 chr2A.!!$R2 2611
8 TraesCS2B01G538300 chr2A 735581965 735583771 1806 True 2405.000000 2405 90.630000 1478 3301 1 chr2A.!!$R4 1823
9 TraesCS2B01G538300 chr2A 735400404 735406343 5939 True 1195.000000 1487 84.141000 136 2681 3 chr2A.!!$R5 2545
10 TraesCS2B01G538300 chr2A 735563458 735566732 3274 True 1010.666667 1581 83.995000 121 3389 3 chr2A.!!$R6 3268
11 TraesCS2B01G538300 chr2D 603128384 603129570 1186 True 1533.000000 1533 90.084000 63 1243 1 chr2D.!!$R1 1180
12 TraesCS2B01G538300 chr2D 602780156 602783365 3209 True 745.750000 1519 85.053000 70 3383 4 chr2D.!!$R2 3313

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
40 41 0.037160 GGCCTGGGAAAGTTCGGTTA 59.963 55.0 0.0 0.0 0.0 2.85 F
1618 5160 0.669318 CGGGACAACATACAGCACGT 60.669 55.0 0.0 0.0 0.0 4.49 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1700 6462 0.250209 CTGGATGGCGCTAATCAGCT 60.250 55.0 20.22 0.0 46.26 4.24 R
3136 10947 0.179034 GATGTGGCATCTCCCTGACC 60.179 60.0 0.00 0.0 0.00 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 2.977772 TTTCCAAAACAGGCACAAGG 57.022 45.000 0.00 0.00 0.00 3.61
23 24 0.463620 TTCCAAAACAGGCACAAGGC 59.536 50.000 0.00 0.00 43.74 4.35
32 33 3.369921 GCACAAGGCCTGGGAAAG 58.630 61.111 13.11 0.00 36.11 2.62
33 34 1.531602 GCACAAGGCCTGGGAAAGT 60.532 57.895 13.11 0.00 36.11 2.66
34 35 1.115326 GCACAAGGCCTGGGAAAGTT 61.115 55.000 13.11 0.00 36.11 2.66
36 37 0.537371 ACAAGGCCTGGGAAAGTTCG 60.537 55.000 13.11 0.00 0.00 3.95
37 38 1.074951 AAGGCCTGGGAAAGTTCGG 59.925 57.895 5.69 0.00 0.00 4.30
38 39 1.716028 AAGGCCTGGGAAAGTTCGGT 61.716 55.000 5.69 0.00 0.00 4.69
39 40 1.228459 GGCCTGGGAAAGTTCGGTT 60.228 57.895 0.00 0.00 0.00 4.44
40 41 0.037160 GGCCTGGGAAAGTTCGGTTA 59.963 55.000 0.00 0.00 0.00 2.85
43 44 2.878526 GCCTGGGAAAGTTCGGTTACAT 60.879 50.000 0.00 0.00 0.00 2.29
44 45 3.418047 CCTGGGAAAGTTCGGTTACATT 58.582 45.455 0.00 0.00 0.00 2.71
46 47 2.554893 TGGGAAAGTTCGGTTACATTGC 59.445 45.455 0.00 0.00 0.00 3.56
47 48 2.817844 GGGAAAGTTCGGTTACATTGCT 59.182 45.455 0.00 0.00 0.00 3.91
48 49 3.254903 GGGAAAGTTCGGTTACATTGCTT 59.745 43.478 0.00 0.00 0.00 3.91
52 53 2.819608 AGTTCGGTTACATTGCTTGCAT 59.180 40.909 0.00 0.00 0.00 3.96
53 54 2.916716 GTTCGGTTACATTGCTTGCATG 59.083 45.455 0.00 0.00 0.00 4.06
54 55 2.431454 TCGGTTACATTGCTTGCATGA 58.569 42.857 3.33 0.00 0.00 3.07
56 57 3.110358 CGGTTACATTGCTTGCATGATG 58.890 45.455 3.33 1.07 0.00 3.07
57 58 2.861935 GGTTACATTGCTTGCATGATGC 59.138 45.455 11.12 11.12 45.29 3.91
74 75 5.894298 TGATGCACTGGGATAACTAATCT 57.106 39.130 0.00 0.00 34.75 2.40
77 78 7.977818 TGATGCACTGGGATAACTAATCTAAT 58.022 34.615 0.00 0.00 34.75 1.73
152 3626 7.955864 GGATTAAAGTTGACTTTTAGCACTACG 59.044 37.037 13.71 0.00 43.07 3.51
165 3639 4.547406 AGCACTACGAAAACTGTTTTCC 57.453 40.909 29.97 19.22 44.73 3.13
175 3651 5.912955 CGAAAACTGTTTTCCAGGTCATTAC 59.087 40.000 29.97 10.33 41.45 1.89
194 3670 7.270579 GTCATTACCTTTCAACGTTGAATAAGC 59.729 37.037 36.57 22.39 45.65 3.09
281 3757 7.229308 AGCATAGATCAAAATGGATAGCAAGA 58.771 34.615 0.00 0.00 0.00 3.02
395 3871 5.074515 AGAAGTTTATGAAGGGGTCCTTGAA 59.925 40.000 3.67 0.00 44.82 2.69
404 3880 2.783510 AGGGGTCCTTGAAGACAAAAGA 59.216 45.455 0.00 0.00 38.59 2.52
424 3900 4.973168 AGAATGGTTGCAGTCAAGAAGTA 58.027 39.130 0.00 0.00 31.93 2.24
463 3939 6.908870 AGAAAATTTTGCCAAAGAGTTGAC 57.091 33.333 8.47 0.00 36.83 3.18
501 3977 7.763528 AGATCAATCACAAGAATGTAGTCAGAC 59.236 37.037 0.00 0.00 37.82 3.51
584 4060 5.191323 AGGAAATCTGAGTGACATCCTTCAT 59.809 40.000 0.00 0.00 38.97 2.57
761 4237 9.468532 GCAAAAATATCAGACTTTGGAATATCC 57.531 33.333 0.00 0.00 36.96 2.59
847 4323 3.565307 ACCCTCTGTTTGCTCAAAATGA 58.435 40.909 0.00 0.00 31.33 2.57
960 4436 4.948847 AGATTGGCTTGGTTGAAAGTTTC 58.051 39.130 8.75 8.75 0.00 2.78
986 4462 7.811117 TTCGATCTCTTTCAAAAGGGTTTAA 57.189 32.000 2.46 0.00 37.74 1.52
1014 4490 4.874966 GTGAGGGAGATGTTTGATCTTGAG 59.125 45.833 0.00 0.00 0.00 3.02
1039 4515 2.606725 GCAACATCGAGAGACATGAAGG 59.393 50.000 0.00 0.00 46.97 3.46
1150 4626 2.087646 GCAAACTTAGGAAGGCTCCAG 58.912 52.381 5.90 0.00 45.24 3.86
1168 4644 5.396213 GCTCCAGATCAGGTACAAGAAAGAT 60.396 44.000 3.80 0.00 0.00 2.40
1171 4647 7.556844 TCCAGATCAGGTACAAGAAAGATTAC 58.443 38.462 3.80 0.00 0.00 1.89
1216 4758 1.247567 TAAGCAAGCTCCAGCCAAAC 58.752 50.000 0.00 0.00 43.38 2.93
1222 4764 1.832167 GCTCCAGCCAAACCACCAA 60.832 57.895 0.00 0.00 34.31 3.67
1264 4806 2.095919 GGCCGAAACATGACAACTGTAC 60.096 50.000 0.00 0.00 0.00 2.90
1297 4839 1.676006 CAACGCCTTCACAAGAAACCT 59.324 47.619 0.00 0.00 32.35 3.50
1307 4849 5.235850 TCACAAGAAACCTATGGCAGTAA 57.764 39.130 0.00 0.00 0.00 2.24
1340 4882 4.534500 GGGAATTTGGGACCCAACTAAAAT 59.466 41.667 26.25 13.30 43.82 1.82
1501 5043 1.679680 GCAGTAGCAGTACCCGATACA 59.320 52.381 10.03 0.00 41.58 2.29
1534 5076 2.260434 GTAGGCCGACAGCGACAA 59.740 61.111 11.60 0.00 45.17 3.18
1539 5081 2.954753 GCCGACAGCGACAAACCAG 61.955 63.158 0.00 0.00 40.82 4.00
1589 5131 3.484407 GATCAGCTGAAGTTATGGGCAT 58.516 45.455 22.50 0.00 0.00 4.40
1618 5160 0.669318 CGGGACAACATACAGCACGT 60.669 55.000 0.00 0.00 0.00 4.49
1700 6462 1.949525 GGACTTTGAGCAGCAAGTCAA 59.050 47.619 20.20 8.53 37.87 3.18
1759 6521 3.057736 ACTGCGGTGGTATTACTATAGCG 60.058 47.826 0.00 10.93 37.51 4.26
1793 6555 2.691526 TGCTAGTGTACAATAGGGTCCG 59.308 50.000 26.64 6.57 30.36 4.79
1869 6640 8.329583 CGCTATCATATACTACTTCCTTCTACG 58.670 40.741 0.00 0.00 0.00 3.51
2201 6985 0.240145 CTGACGTGTACAGCTTCGGA 59.760 55.000 0.00 0.00 0.00 4.55
2208 6992 3.428452 CGTGTACAGCTTCGGAATCCTAA 60.428 47.826 0.00 0.00 0.00 2.69
2551 7349 3.635331 CTTGGTCACAGTTGCATTCAAG 58.365 45.455 0.00 0.00 31.93 3.02
2614 7453 5.163713 GCCGAGAACTGCTATCTTGAAAAAT 60.164 40.000 3.63 0.00 31.07 1.82
2617 7456 7.905493 CCGAGAACTGCTATCTTGAAAAATAAC 59.095 37.037 3.63 0.00 31.07 1.89
2937 10674 5.198965 AGCACATCAAGCCAAGAATTAGAT 58.801 37.500 0.00 0.00 0.00 1.98
2946 10683 6.506500 AGCCAAGAATTAGATTGTTCAGTG 57.493 37.500 0.00 0.00 0.00 3.66
2947 10684 6.006449 AGCCAAGAATTAGATTGTTCAGTGT 58.994 36.000 0.00 0.00 0.00 3.55
2948 10685 7.168219 AGCCAAGAATTAGATTGTTCAGTGTA 58.832 34.615 0.00 0.00 0.00 2.90
2949 10686 7.119846 AGCCAAGAATTAGATTGTTCAGTGTAC 59.880 37.037 0.00 0.00 0.00 2.90
2950 10687 7.626452 GCCAAGAATTAGATTGTTCAGTGTACC 60.626 40.741 0.00 0.00 0.00 3.34
2951 10688 7.607991 CCAAGAATTAGATTGTTCAGTGTACCT 59.392 37.037 0.00 0.00 0.00 3.08
2952 10689 9.003658 CAAGAATTAGATTGTTCAGTGTACCTT 57.996 33.333 0.00 0.00 0.00 3.50
2953 10690 8.553459 AGAATTAGATTGTTCAGTGTACCTTG 57.447 34.615 0.00 0.00 0.00 3.61
2954 10691 6.743575 ATTAGATTGTTCAGTGTACCTTGC 57.256 37.500 0.00 0.00 0.00 4.01
2955 10692 4.357918 AGATTGTTCAGTGTACCTTGCT 57.642 40.909 0.00 0.00 0.00 3.91
2956 10693 4.718961 AGATTGTTCAGTGTACCTTGCTT 58.281 39.130 0.00 0.00 0.00 3.91
2957 10694 4.516698 AGATTGTTCAGTGTACCTTGCTTG 59.483 41.667 0.00 0.00 0.00 4.01
2958 10695 3.552132 TGTTCAGTGTACCTTGCTTGA 57.448 42.857 0.00 0.00 0.00 3.02
2959 10696 3.466836 TGTTCAGTGTACCTTGCTTGAG 58.533 45.455 0.00 0.00 0.00 3.02
2960 10697 2.169832 TCAGTGTACCTTGCTTGAGC 57.830 50.000 0.00 0.00 42.50 4.26
2961 10698 1.694150 TCAGTGTACCTTGCTTGAGCT 59.306 47.619 4.44 0.00 42.66 4.09
2962 10699 1.802960 CAGTGTACCTTGCTTGAGCTG 59.197 52.381 4.44 0.00 42.66 4.24
3037 10790 3.062466 CCAGTCGTCTCGCCTCCA 61.062 66.667 0.00 0.00 0.00 3.86
3149 10960 2.367512 AGGGGGTCAGGGAGATGC 60.368 66.667 0.00 0.00 0.00 3.91
3151 10962 2.692368 GGGGTCAGGGAGATGCCA 60.692 66.667 0.00 0.00 38.95 4.92
3152 10963 2.592308 GGGTCAGGGAGATGCCAC 59.408 66.667 0.00 0.00 38.95 5.01
3156 10967 0.531532 GTCAGGGAGATGCCACATCG 60.532 60.000 2.12 0.00 38.95 3.84
3242 11056 3.137459 AGCAGTCGGAGCTCGGAG 61.137 66.667 22.94 13.94 38.01 4.63
3306 11157 2.493973 GAGCTCGAGCAGACAGGG 59.506 66.667 36.87 0.00 45.16 4.45
3398 11255 7.914537 GCTTTTGCCAACATTGAGTATATAC 57.085 36.000 4.60 4.60 40.15 1.47
3399 11256 7.707104 GCTTTTGCCAACATTGAGTATATACT 58.293 34.615 15.37 15.37 40.15 2.12
3400 11257 7.645340 GCTTTTGCCAACATTGAGTATATACTG 59.355 37.037 20.13 8.97 40.15 2.74
3401 11258 6.618287 TTGCCAACATTGAGTATATACTGC 57.382 37.500 20.13 13.92 36.50 4.40
3402 11259 5.063204 TGCCAACATTGAGTATATACTGCC 58.937 41.667 20.13 7.32 36.50 4.85
3403 11260 5.163205 TGCCAACATTGAGTATATACTGCCT 60.163 40.000 20.13 1.40 36.50 4.75
3404 11261 6.042666 TGCCAACATTGAGTATATACTGCCTA 59.957 38.462 20.13 4.38 36.50 3.93
3405 11262 6.369065 GCCAACATTGAGTATATACTGCCTAC 59.631 42.308 20.13 5.91 36.50 3.18
3406 11263 6.874134 CCAACATTGAGTATATACTGCCTACC 59.126 42.308 20.13 5.21 36.50 3.18
3407 11264 7.256332 CCAACATTGAGTATATACTGCCTACCT 60.256 40.741 20.13 0.00 36.50 3.08
3408 11265 7.469537 ACATTGAGTATATACTGCCTACCTC 57.530 40.000 20.13 4.08 36.50 3.85
3409 11266 7.010771 ACATTGAGTATATACTGCCTACCTCA 58.989 38.462 20.13 6.61 36.50 3.86
3410 11267 7.676043 ACATTGAGTATATACTGCCTACCTCAT 59.324 37.037 20.13 0.00 36.50 2.90
3411 11268 7.704578 TTGAGTATATACTGCCTACCTCATC 57.295 40.000 20.13 2.22 36.50 2.92
3412 11269 6.188407 TGAGTATATACTGCCTACCTCATCC 58.812 44.000 20.13 1.76 36.50 3.51
3413 11270 6.153942 AGTATATACTGCCTACCTCATCCA 57.846 41.667 14.71 0.00 34.72 3.41
3414 11271 6.562228 AGTATATACTGCCTACCTCATCCAA 58.438 40.000 14.71 0.00 34.72 3.53
3415 11272 5.746990 ATATACTGCCTACCTCATCCAAC 57.253 43.478 0.00 0.00 0.00 3.77
3416 11273 0.537188 ACTGCCTACCTCATCCAACG 59.463 55.000 0.00 0.00 0.00 4.10
3417 11274 0.824109 CTGCCTACCTCATCCAACGA 59.176 55.000 0.00 0.00 0.00 3.85
3418 11275 0.824109 TGCCTACCTCATCCAACGAG 59.176 55.000 0.00 0.00 0.00 4.18
3419 11276 1.112113 GCCTACCTCATCCAACGAGA 58.888 55.000 0.00 0.00 31.84 4.04
3420 11277 1.689273 GCCTACCTCATCCAACGAGAT 59.311 52.381 0.00 0.00 31.84 2.75
3421 11278 2.103263 GCCTACCTCATCCAACGAGATT 59.897 50.000 0.00 0.00 31.84 2.40
3422 11279 3.432326 GCCTACCTCATCCAACGAGATTT 60.432 47.826 0.00 0.00 31.84 2.17
3423 11280 4.770795 CCTACCTCATCCAACGAGATTTT 58.229 43.478 0.00 0.00 31.84 1.82
3424 11281 4.811557 CCTACCTCATCCAACGAGATTTTC 59.188 45.833 0.00 0.00 31.84 2.29
3425 11282 4.559862 ACCTCATCCAACGAGATTTTCT 57.440 40.909 0.00 0.00 31.84 2.52
3426 11283 4.508662 ACCTCATCCAACGAGATTTTCTC 58.491 43.478 0.00 0.00 40.06 2.87
3427 11284 4.020218 ACCTCATCCAACGAGATTTTCTCA 60.020 41.667 5.46 0.00 43.55 3.27
3428 11285 4.937620 CCTCATCCAACGAGATTTTCTCAA 59.062 41.667 5.46 0.00 43.55 3.02
3429 11286 5.412594 CCTCATCCAACGAGATTTTCTCAAA 59.587 40.000 5.46 0.00 43.55 2.69
3430 11287 6.072508 CCTCATCCAACGAGATTTTCTCAAAA 60.073 38.462 5.46 0.00 43.55 2.44
3431 11288 7.270757 TCATCCAACGAGATTTTCTCAAAAA 57.729 32.000 5.46 0.00 43.55 1.94
3458 11315 6.884280 AAAAACTCATCCAACGAGATTTCT 57.116 33.333 0.00 0.00 35.27 2.52
3459 11316 6.487689 AAAACTCATCCAACGAGATTTCTC 57.512 37.500 0.00 0.00 32.02 2.87
3460 11317 5.413309 AACTCATCCAACGAGATTTCTCT 57.587 39.130 6.06 0.00 40.75 3.10
3461 11318 6.531503 AACTCATCCAACGAGATTTCTCTA 57.468 37.500 6.06 0.00 40.75 2.43
3462 11319 6.531503 ACTCATCCAACGAGATTTCTCTAA 57.468 37.500 6.06 0.00 40.75 2.10
3463 11320 6.936279 ACTCATCCAACGAGATTTCTCTAAA 58.064 36.000 6.06 0.00 40.75 1.85
3464 11321 7.386851 ACTCATCCAACGAGATTTCTCTAAAA 58.613 34.615 6.06 0.00 40.75 1.52
3465 11322 7.332182 ACTCATCCAACGAGATTTCTCTAAAAC 59.668 37.037 6.06 0.00 40.75 2.43
3466 11323 7.158697 TCATCCAACGAGATTTCTCTAAAACA 58.841 34.615 6.06 0.00 40.75 2.83
3467 11324 7.659799 TCATCCAACGAGATTTCTCTAAAACAA 59.340 33.333 6.06 0.00 40.75 2.83
3468 11325 7.795482 TCCAACGAGATTTCTCTAAAACAAA 57.205 32.000 6.06 0.00 40.75 2.83
3469 11326 8.215926 TCCAACGAGATTTCTCTAAAACAAAA 57.784 30.769 6.06 0.00 40.75 2.44
3470 11327 8.679100 TCCAACGAGATTTCTCTAAAACAAAAA 58.321 29.630 6.06 0.00 40.75 1.94
3471 11328 8.958043 CCAACGAGATTTCTCTAAAACAAAAAG 58.042 33.333 6.06 0.00 40.75 2.27
3472 11329 9.716507 CAACGAGATTTCTCTAAAACAAAAAGA 57.283 29.630 6.06 0.00 40.75 2.52
3481 11338 9.855021 TTCTCTAAAACAAAAAGAAAAGGACTG 57.145 29.630 0.00 0.00 0.00 3.51
3482 11339 9.020731 TCTCTAAAACAAAAAGAAAAGGACTGT 57.979 29.630 0.00 0.00 0.00 3.55
3483 11340 8.980143 TCTAAAACAAAAAGAAAAGGACTGTG 57.020 30.769 0.00 0.00 0.00 3.66
3484 11341 6.480524 AAAACAAAAAGAAAAGGACTGTGC 57.519 33.333 0.00 0.00 0.00 4.57
3485 11342 5.405935 AACAAAAAGAAAAGGACTGTGCT 57.594 34.783 0.00 0.00 0.00 4.40
3486 11343 6.524101 AACAAAAAGAAAAGGACTGTGCTA 57.476 33.333 1.14 0.00 0.00 3.49
3487 11344 6.524101 ACAAAAAGAAAAGGACTGTGCTAA 57.476 33.333 1.14 0.00 0.00 3.09
3488 11345 6.330278 ACAAAAAGAAAAGGACTGTGCTAAC 58.670 36.000 1.14 0.00 0.00 2.34
3489 11346 6.152831 ACAAAAAGAAAAGGACTGTGCTAACT 59.847 34.615 1.14 0.00 0.00 2.24
3490 11347 6.775594 AAAAGAAAAGGACTGTGCTAACTT 57.224 33.333 1.14 6.07 0.00 2.66
3491 11348 6.378710 AAAGAAAAGGACTGTGCTAACTTC 57.621 37.500 1.14 6.45 0.00 3.01
3492 11349 4.390264 AGAAAAGGACTGTGCTAACTTCC 58.610 43.478 1.14 0.00 32.23 3.46
3493 11350 3.857157 AAAGGACTGTGCTAACTTCCA 57.143 42.857 1.14 0.00 33.69 3.53
3494 11351 2.841442 AGGACTGTGCTAACTTCCAC 57.159 50.000 0.00 0.00 33.69 4.02
3495 11352 2.047061 AGGACTGTGCTAACTTCCACA 58.953 47.619 0.00 0.00 39.45 4.17
3496 11353 2.143925 GGACTGTGCTAACTTCCACAC 58.856 52.381 0.00 0.00 37.07 3.82
3497 11354 1.792949 GACTGTGCTAACTTCCACACG 59.207 52.381 0.00 0.00 37.07 4.49
3498 11355 1.138266 ACTGTGCTAACTTCCACACGT 59.862 47.619 0.00 0.00 37.07 4.49
3499 11356 2.363038 ACTGTGCTAACTTCCACACGTA 59.637 45.455 0.00 0.00 37.07 3.57
3500 11357 2.729882 CTGTGCTAACTTCCACACGTAC 59.270 50.000 0.00 0.00 37.07 3.67
3501 11358 1.717645 GTGCTAACTTCCACACGTACG 59.282 52.381 15.01 15.01 32.37 3.67
3502 11359 1.336148 TGCTAACTTCCACACGTACGG 60.336 52.381 21.06 11.05 0.00 4.02
3503 11360 1.068333 GCTAACTTCCACACGTACGGA 60.068 52.381 21.06 3.86 0.00 4.69
3504 11361 2.607771 GCTAACTTCCACACGTACGGAA 60.608 50.000 21.06 15.08 38.99 4.30
3509 11366 3.724508 TTCCACACGTACGGAAGTTAA 57.275 42.857 21.06 8.74 46.40 2.01
3510 11367 3.287312 TCCACACGTACGGAAGTTAAG 57.713 47.619 21.06 6.56 46.40 1.85
3511 11368 1.723003 CCACACGTACGGAAGTTAAGC 59.277 52.381 21.06 0.00 46.40 3.09
3512 11369 2.396601 CACACGTACGGAAGTTAAGCA 58.603 47.619 21.06 0.00 46.40 3.91
3513 11370 2.796031 CACACGTACGGAAGTTAAGCAA 59.204 45.455 21.06 0.00 46.40 3.91
3514 11371 2.796593 ACACGTACGGAAGTTAAGCAAC 59.203 45.455 21.06 0.00 46.40 4.17
3515 11372 2.796031 CACGTACGGAAGTTAAGCAACA 59.204 45.455 21.06 0.00 46.40 3.33
3516 11373 3.054878 ACGTACGGAAGTTAAGCAACAG 58.945 45.455 21.06 0.00 46.40 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 3.244044 GCCTTGTGCCTGTTTTGGAAATA 60.244 43.478 0.00 0.00 0.00 1.40
2 3 2.485302 GCCTTGTGCCTGTTTTGGAAAT 60.485 45.455 0.00 0.00 0.00 2.17
3 4 1.134551 GCCTTGTGCCTGTTTTGGAAA 60.135 47.619 0.00 0.00 0.00 3.13
4 5 0.463620 GCCTTGTGCCTGTTTTGGAA 59.536 50.000 0.00 0.00 0.00 3.53
5 6 2.123409 GCCTTGTGCCTGTTTTGGA 58.877 52.632 0.00 0.00 0.00 3.53
6 7 4.756630 GCCTTGTGCCTGTTTTGG 57.243 55.556 0.00 0.00 0.00 3.28
15 16 1.115326 AACTTTCCCAGGCCTTGTGC 61.115 55.000 0.00 0.00 40.16 4.57
18 19 1.244019 CCGAACTTTCCCAGGCCTTG 61.244 60.000 0.00 0.00 0.00 3.61
21 22 0.037160 TAACCGAACTTTCCCAGGCC 59.963 55.000 0.00 0.00 0.00 5.19
22 23 1.162698 GTAACCGAACTTTCCCAGGC 58.837 55.000 0.00 0.00 0.00 4.85
23 24 2.554370 TGTAACCGAACTTTCCCAGG 57.446 50.000 0.00 0.00 0.00 4.45
24 25 3.365969 GCAATGTAACCGAACTTTCCCAG 60.366 47.826 0.00 0.00 0.00 4.45
25 26 2.554893 GCAATGTAACCGAACTTTCCCA 59.445 45.455 0.00 0.00 0.00 4.37
27 28 4.226761 CAAGCAATGTAACCGAACTTTCC 58.773 43.478 0.00 0.00 0.00 3.13
28 29 3.668656 GCAAGCAATGTAACCGAACTTTC 59.331 43.478 0.00 0.00 0.00 2.62
29 30 3.067461 TGCAAGCAATGTAACCGAACTTT 59.933 39.130 0.00 0.00 0.00 2.66
30 31 2.621055 TGCAAGCAATGTAACCGAACTT 59.379 40.909 0.00 0.00 0.00 2.66
31 32 2.226330 TGCAAGCAATGTAACCGAACT 58.774 42.857 0.00 0.00 0.00 3.01
32 33 2.697431 TGCAAGCAATGTAACCGAAC 57.303 45.000 0.00 0.00 0.00 3.95
33 34 2.816672 TCATGCAAGCAATGTAACCGAA 59.183 40.909 0.00 0.00 0.00 4.30
34 35 2.431454 TCATGCAAGCAATGTAACCGA 58.569 42.857 0.00 0.00 0.00 4.69
36 37 2.861935 GCATCATGCAAGCAATGTAACC 59.138 45.455 4.20 0.00 44.26 2.85
48 49 9.540009 AGATTAGTTATCCCAGTGCATCATGCA 62.540 40.741 8.71 8.71 41.81 3.96
52 53 5.894298 AGATTAGTTATCCCAGTGCATCA 57.106 39.130 0.00 0.00 33.45 3.07
53 54 8.097038 TCATTAGATTAGTTATCCCAGTGCATC 58.903 37.037 0.00 0.00 33.45 3.91
54 55 7.977818 TCATTAGATTAGTTATCCCAGTGCAT 58.022 34.615 0.00 0.00 33.45 3.96
56 57 8.677148 TTTCATTAGATTAGTTATCCCAGTGC 57.323 34.615 0.00 0.00 33.45 4.40
106 111 7.902920 AATCCAACATATAAATGCAGAACCT 57.097 32.000 0.00 0.00 36.50 3.50
134 141 6.627671 CAGTTTTCGTAGTGCTAAAAGTCAAC 59.372 38.462 0.00 0.00 0.00 3.18
152 3626 6.213677 GGTAATGACCTGGAAAACAGTTTTC 58.786 40.000 25.08 25.08 46.06 2.29
165 3639 4.513692 TCAACGTTGAAAGGTAATGACCTG 59.486 41.667 27.94 0.00 43.84 4.00
194 3670 3.539604 CATCTTTGGAAGTAGCAGGGAG 58.460 50.000 0.00 0.00 0.00 4.30
363 3839 5.012893 CCCTTCATAAACTTCTCCAAAGCT 58.987 41.667 0.00 0.00 0.00 3.74
395 3871 3.953612 TGACTGCAACCATTCTTTTGTCT 59.046 39.130 0.00 0.00 0.00 3.41
404 3880 7.281774 CAGATATACTTCTTGACTGCAACCATT 59.718 37.037 0.00 0.00 0.00 3.16
501 3977 4.127907 TCATCTACACAGTAGCCGACTAG 58.872 47.826 0.00 0.00 35.64 2.57
761 4237 8.085296 AGAGTATTTTCAGTGTTGACTAGTCTG 58.915 37.037 23.01 12.79 31.71 3.51
918 4394 1.763770 CCCACCCTCTGTTCTTGCT 59.236 57.895 0.00 0.00 0.00 3.91
932 4408 0.251787 AACCAAGCCAATCTCCCCAC 60.252 55.000 0.00 0.00 0.00 4.61
960 4436 5.886960 ACCCTTTTGAAAGAGATCGAATG 57.113 39.130 5.09 0.00 38.28 2.67
986 4462 1.912043 CAAACATCTCCCTCACCCTCT 59.088 52.381 0.00 0.00 0.00 3.69
1014 4490 3.867493 TCATGTCTCTCGATGTTGCAATC 59.133 43.478 0.59 0.00 0.00 2.67
1039 4515 1.396301 CTTGGCAATCTCTTCGACAGC 59.604 52.381 0.00 0.00 0.00 4.40
1068 4544 3.057315 CGTGTTCCATCCTCAAGCATTTT 60.057 43.478 0.00 0.00 0.00 1.82
1150 4626 7.278868 CAGTGGTAATCTTTCTTGTACCTGATC 59.721 40.741 0.00 0.00 37.49 2.92
1168 4644 5.104024 TCCTTACCCAAGAAAACAGTGGTAA 60.104 40.000 0.00 0.00 36.32 2.85
1171 4647 3.827722 TCCTTACCCAAGAAAACAGTGG 58.172 45.455 0.00 0.00 33.20 4.00
1264 4806 1.576421 GCGTTGTTTCAGCTGGAGG 59.424 57.895 15.13 2.55 0.00 4.30
1297 4839 2.820787 CCGTTTTTGGGTTACTGCCATA 59.179 45.455 0.00 0.00 0.00 2.74
1324 4866 1.431243 AGCCATTTTAGTTGGGTCCCA 59.569 47.619 6.47 6.47 40.92 4.37
1325 4867 1.824852 CAGCCATTTTAGTTGGGTCCC 59.175 52.381 0.00 0.00 42.89 4.46
1340 4882 2.518112 TGCTTGTTTCGGCAGCCA 60.518 55.556 13.30 0.00 34.22 4.75
1466 5008 4.020218 TGCTACTGCTTTCCTGTGATAGTT 60.020 41.667 0.00 0.00 40.48 2.24
1501 5043 3.434596 GGCCTACCGATAAAAGTTCCCAT 60.435 47.826 0.00 0.00 0.00 4.00
1539 5081 3.190874 CAGGTCTTCCAGCTCGAAATAC 58.809 50.000 0.00 0.00 35.89 1.89
1589 5131 0.759812 TGTTGTCCCGACTGTACCCA 60.760 55.000 0.00 0.00 0.00 4.51
1700 6462 0.250209 CTGGATGGCGCTAATCAGCT 60.250 55.000 20.22 0.00 46.26 4.24
1708 6470 0.537143 TGTTTGTTCTGGATGGCGCT 60.537 50.000 7.64 0.00 0.00 5.92
1759 6521 4.464069 ACACTAGCAACTTCTCATCCTC 57.536 45.455 0.00 0.00 0.00 3.71
1855 6626 9.804758 AACATTAGAAATCGTAGAAGGAAGTAG 57.195 33.333 0.00 0.00 43.58 2.57
1869 6640 7.599998 AGTGATGCACCAAAAACATTAGAAATC 59.400 33.333 0.00 0.00 34.49 2.17
2201 6985 3.782523 TGAGAACCTCCAGCATTAGGATT 59.217 43.478 5.36 0.00 36.66 3.01
2208 6992 0.534412 CGAGTGAGAACCTCCAGCAT 59.466 55.000 0.00 0.00 0.00 3.79
2343 7130 0.905357 GCCTTCTGCTCCTGTCCTAA 59.095 55.000 0.00 0.00 36.87 2.69
2551 7349 4.070009 GGGGTCCCGAAAATATATGACAC 58.930 47.826 0.48 0.00 0.00 3.67
2614 7453 7.253354 CGTTACAAACTTGCAATGAAAACGTTA 60.253 33.333 21.72 0.00 34.98 3.18
2617 7456 5.411222 CGTTACAAACTTGCAATGAAAACG 58.589 37.500 19.22 19.22 33.98 3.60
2937 10674 3.876914 CTCAAGCAAGGTACACTGAACAA 59.123 43.478 0.00 0.00 0.00 2.83
2946 10683 1.071605 CGACAGCTCAAGCAAGGTAC 58.928 55.000 4.59 0.00 45.16 3.34
2947 10684 0.966179 TCGACAGCTCAAGCAAGGTA 59.034 50.000 4.59 0.00 45.16 3.08
2948 10685 0.320247 CTCGACAGCTCAAGCAAGGT 60.320 55.000 4.59 0.00 45.16 3.50
2949 10686 1.633852 GCTCGACAGCTCAAGCAAGG 61.634 60.000 4.59 0.00 43.09 3.61
2950 10687 1.786582 GCTCGACAGCTCAAGCAAG 59.213 57.895 4.59 0.00 43.09 4.01
2951 10688 3.957260 GCTCGACAGCTCAAGCAA 58.043 55.556 4.59 0.00 43.09 3.91
2959 10696 2.508887 CTGCTCCTGCTCGACAGC 60.509 66.667 8.85 0.02 45.78 4.40
2960 10697 2.508887 GCTGCTCCTGCTCGACAG 60.509 66.667 7.72 7.72 46.77 3.51
2961 10698 4.426112 CGCTGCTCCTGCTCGACA 62.426 66.667 0.00 0.00 40.48 4.35
3026 10779 3.827898 CGGAGGTGGAGGCGAGAC 61.828 72.222 0.00 0.00 0.00 3.36
3136 10947 0.179034 GATGTGGCATCTCCCTGACC 60.179 60.000 0.00 0.00 0.00 4.02
3149 10960 2.655364 CGACTAGCGCCGATGTGG 60.655 66.667 2.29 0.00 42.50 4.17
3182 10993 3.233231 GCCCACCTTGCCAGCAAA 61.233 61.111 6.52 0.00 35.33 3.68
3242 11056 1.203063 GCCTAAATCCCAATCCCTCCC 60.203 57.143 0.00 0.00 0.00 4.30
3306 11157 3.384014 CTCTCGTCGTCCAGGTCGC 62.384 68.421 0.55 0.00 0.00 5.19
3386 11243 7.343316 GGATGAGGTAGGCAGTATATACTCAAT 59.657 40.741 12.62 4.28 33.46 2.57
3389 11246 6.188407 TGGATGAGGTAGGCAGTATATACTC 58.812 44.000 12.62 7.87 33.46 2.59
3390 11247 6.153942 TGGATGAGGTAGGCAGTATATACT 57.846 41.667 9.71 9.71 36.90 2.12
3391 11248 6.625300 CGTTGGATGAGGTAGGCAGTATATAC 60.625 46.154 4.60 4.60 0.00 1.47
3392 11249 5.417894 CGTTGGATGAGGTAGGCAGTATATA 59.582 44.000 0.00 0.00 0.00 0.86
3393 11250 4.220821 CGTTGGATGAGGTAGGCAGTATAT 59.779 45.833 0.00 0.00 0.00 0.86
3394 11251 3.572682 CGTTGGATGAGGTAGGCAGTATA 59.427 47.826 0.00 0.00 0.00 1.47
3395 11252 2.365617 CGTTGGATGAGGTAGGCAGTAT 59.634 50.000 0.00 0.00 0.00 2.12
3396 11253 1.754803 CGTTGGATGAGGTAGGCAGTA 59.245 52.381 0.00 0.00 0.00 2.74
3397 11254 0.537188 CGTTGGATGAGGTAGGCAGT 59.463 55.000 0.00 0.00 0.00 4.40
3398 11255 0.824109 TCGTTGGATGAGGTAGGCAG 59.176 55.000 0.00 0.00 0.00 4.85
3399 11256 0.824109 CTCGTTGGATGAGGTAGGCA 59.176 55.000 0.00 0.00 0.00 4.75
3400 11257 1.112113 TCTCGTTGGATGAGGTAGGC 58.888 55.000 0.00 0.00 32.20 3.93
3401 11258 4.408182 AAATCTCGTTGGATGAGGTAGG 57.592 45.455 0.00 0.00 32.20 3.18
3402 11259 5.665459 AGAAAATCTCGTTGGATGAGGTAG 58.335 41.667 0.00 0.00 32.20 3.18
3403 11260 5.186992 TGAGAAAATCTCGTTGGATGAGGTA 59.813 40.000 3.17 0.00 46.25 3.08
3404 11261 4.020218 TGAGAAAATCTCGTTGGATGAGGT 60.020 41.667 3.17 0.00 46.25 3.85
3405 11262 4.507710 TGAGAAAATCTCGTTGGATGAGG 58.492 43.478 3.17 0.00 46.25 3.86
3406 11263 6.486253 TTTGAGAAAATCTCGTTGGATGAG 57.514 37.500 3.17 0.00 46.25 2.90
3407 11264 6.875948 TTTTGAGAAAATCTCGTTGGATGA 57.124 33.333 3.17 0.00 46.25 2.92
3435 11292 6.884280 AGAAATCTCGTTGGATGAGTTTTT 57.116 33.333 7.33 4.95 34.84 1.94
3436 11293 6.487689 GAGAAATCTCGTTGGATGAGTTTT 57.512 37.500 6.11 6.11 36.43 2.43
3455 11312 9.855021 CAGTCCTTTTCTTTTTGTTTTAGAGAA 57.145 29.630 0.00 0.00 0.00 2.87
3456 11313 9.020731 ACAGTCCTTTTCTTTTTGTTTTAGAGA 57.979 29.630 0.00 0.00 0.00 3.10
3457 11314 9.076596 CACAGTCCTTTTCTTTTTGTTTTAGAG 57.923 33.333 0.00 0.00 0.00 2.43
3458 11315 7.544217 GCACAGTCCTTTTCTTTTTGTTTTAGA 59.456 33.333 0.00 0.00 0.00 2.10
3459 11316 7.545615 AGCACAGTCCTTTTCTTTTTGTTTTAG 59.454 33.333 0.00 0.00 0.00 1.85
3460 11317 7.382898 AGCACAGTCCTTTTCTTTTTGTTTTA 58.617 30.769 0.00 0.00 0.00 1.52
3461 11318 6.230472 AGCACAGTCCTTTTCTTTTTGTTTT 58.770 32.000 0.00 0.00 0.00 2.43
3462 11319 5.793817 AGCACAGTCCTTTTCTTTTTGTTT 58.206 33.333 0.00 0.00 0.00 2.83
3463 11320 5.405935 AGCACAGTCCTTTTCTTTTTGTT 57.594 34.783 0.00 0.00 0.00 2.83
3464 11321 6.152831 AGTTAGCACAGTCCTTTTCTTTTTGT 59.847 34.615 0.00 0.00 0.00 2.83
3465 11322 6.564328 AGTTAGCACAGTCCTTTTCTTTTTG 58.436 36.000 0.00 0.00 0.00 2.44
3466 11323 6.775594 AGTTAGCACAGTCCTTTTCTTTTT 57.224 33.333 0.00 0.00 0.00 1.94
3467 11324 6.183360 GGAAGTTAGCACAGTCCTTTTCTTTT 60.183 38.462 0.00 0.00 0.00 2.27
3468 11325 5.299531 GGAAGTTAGCACAGTCCTTTTCTTT 59.700 40.000 0.00 0.00 0.00 2.52
3469 11326 4.822350 GGAAGTTAGCACAGTCCTTTTCTT 59.178 41.667 0.00 0.00 0.00 2.52
3470 11327 4.141482 TGGAAGTTAGCACAGTCCTTTTCT 60.141 41.667 0.00 0.00 32.74 2.52
3471 11328 4.023963 GTGGAAGTTAGCACAGTCCTTTTC 60.024 45.833 0.00 0.00 32.74 2.29
3472 11329 3.883489 GTGGAAGTTAGCACAGTCCTTTT 59.117 43.478 0.00 0.00 32.74 2.27
3473 11330 3.118038 TGTGGAAGTTAGCACAGTCCTTT 60.118 43.478 0.00 0.00 32.74 3.11
3474 11331 2.438021 TGTGGAAGTTAGCACAGTCCTT 59.562 45.455 0.00 0.00 32.74 3.36
3475 11332 2.047061 TGTGGAAGTTAGCACAGTCCT 58.953 47.619 0.00 0.00 32.74 3.85
3476 11333 2.143925 GTGTGGAAGTTAGCACAGTCC 58.856 52.381 0.00 0.00 32.34 3.85
3477 11334 1.792949 CGTGTGGAAGTTAGCACAGTC 59.207 52.381 0.00 0.00 32.62 3.51
3478 11335 1.138266 ACGTGTGGAAGTTAGCACAGT 59.862 47.619 0.00 0.00 32.62 3.55
3479 11336 1.865865 ACGTGTGGAAGTTAGCACAG 58.134 50.000 0.00 0.00 32.62 3.66
3480 11337 2.746269 GTACGTGTGGAAGTTAGCACA 58.254 47.619 0.00 0.00 32.62 4.57
3481 11338 1.717645 CGTACGTGTGGAAGTTAGCAC 59.282 52.381 7.22 0.00 0.00 4.40
3482 11339 1.336148 CCGTACGTGTGGAAGTTAGCA 60.336 52.381 15.21 0.00 0.00 3.49
3483 11340 1.068333 TCCGTACGTGTGGAAGTTAGC 60.068 52.381 15.21 0.00 0.00 3.09
3484 11341 2.995466 TCCGTACGTGTGGAAGTTAG 57.005 50.000 15.21 0.00 0.00 2.34
3489 11346 3.641648 CTTAACTTCCGTACGTGTGGAA 58.358 45.455 18.66 18.66 41.83 3.53
3490 11347 2.607771 GCTTAACTTCCGTACGTGTGGA 60.608 50.000 15.21 6.51 0.00 4.02
3491 11348 1.723003 GCTTAACTTCCGTACGTGTGG 59.277 52.381 15.21 0.00 0.00 4.17
3492 11349 2.396601 TGCTTAACTTCCGTACGTGTG 58.603 47.619 15.21 5.84 0.00 3.82
3493 11350 2.796593 GTTGCTTAACTTCCGTACGTGT 59.203 45.455 15.21 7.22 0.00 4.49
3494 11351 2.796031 TGTTGCTTAACTTCCGTACGTG 59.204 45.455 15.21 5.96 0.00 4.49
3495 11352 3.054878 CTGTTGCTTAACTTCCGTACGT 58.945 45.455 15.21 0.00 0.00 3.57
3496 11353 3.700130 CTGTTGCTTAACTTCCGTACG 57.300 47.619 8.69 8.69 0.00 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.