Multiple sequence alignment - TraesCS2B01G537900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G537900 chr2B 100.000 2734 0 0 1 2734 733268973 733266240 0.000000e+00 5049
1 TraesCS2B01G537900 chr2B 96.416 586 19 2 120 703 186779115 186778530 0.000000e+00 965
2 TraesCS2B01G537900 chr2B 96.416 586 19 2 120 703 465515427 465516012 0.000000e+00 965
3 TraesCS2B01G537900 chr7A 95.531 2327 95 7 409 2734 87207437 87205119 0.000000e+00 3712
4 TraesCS2B01G537900 chr7A 95.164 2316 105 5 420 2734 204585876 204588185 0.000000e+00 3650
5 TraesCS2B01G537900 chr7D 96.068 2238 81 6 456 2690 104002235 104004468 0.000000e+00 3639
6 TraesCS2B01G537900 chr7D 95.741 587 21 4 120 703 549497831 549498416 0.000000e+00 942
7 TraesCS2B01G537900 chr2A 94.895 2331 109 8 407 2734 92873717 92871394 0.000000e+00 3637
8 TraesCS2B01G537900 chr2A 97.092 1685 46 2 1051 2734 759629325 759627643 0.000000e+00 2837
9 TraesCS2B01G537900 chr2A 92.122 622 40 8 410 1029 759630550 759629936 0.000000e+00 869
10 TraesCS2B01G537900 chr2A 93.333 120 8 0 1 120 405519358 405519477 7.780000e-41 178
11 TraesCS2B01G537900 chr5B 94.435 2282 117 6 456 2734 633446549 633448823 0.000000e+00 3502
12 TraesCS2B01G537900 chr5B 96.923 585 17 1 120 703 152510549 152509965 0.000000e+00 979
13 TraesCS2B01G537900 chrUn 97.438 1015 25 1 1721 2734 68603105 68604119 0.000000e+00 1729
14 TraesCS2B01G537900 chrUn 95.784 593 21 3 112 703 105260730 105261319 0.000000e+00 953
15 TraesCS2B01G537900 chr6A 97.453 903 22 1 1832 2734 355527891 355528792 0.000000e+00 1539
16 TraesCS2B01G537900 chr6A 95.084 834 31 6 120 944 464308542 464309374 0.000000e+00 1304
17 TraesCS2B01G537900 chr1A 97.453 903 22 1 1832 2734 368720069 368719168 0.000000e+00 1539
18 TraesCS2B01G537900 chr7B 95.741 587 23 2 119 703 256348572 256347986 0.000000e+00 944
19 TraesCS2B01G537900 chr5A 95.439 592 23 3 116 703 532809871 532809280 0.000000e+00 941
20 TraesCS2B01G537900 chr1D 95.578 588 21 4 120 703 489738016 489737430 0.000000e+00 937
21 TraesCS2B01G537900 chr3D 85.912 795 67 22 955 1717 580723753 580722972 0.000000e+00 806
22 TraesCS2B01G537900 chr3B 91.949 472 26 3 473 944 570335807 570336266 0.000000e+00 651
23 TraesCS2B01G537900 chr3B 82.946 774 69 25 959 1708 777989783 777990517 8.260000e-180 640
24 TraesCS2B01G537900 chr4B 94.958 119 6 0 1 119 130024393 130024275 1.290000e-43 187
25 TraesCS2B01G537900 chr4B 92.500 120 9 0 1 120 369695672 369695553 3.620000e-39 172
26 TraesCS2B01G537900 chr4B 92.437 119 9 0 1 119 8797185 8797067 1.300000e-38 171
27 TraesCS2B01G537900 chr6B 92.562 121 9 0 1 121 258663955 258663835 1.010000e-39 174
28 TraesCS2B01G537900 chr6B 92.500 120 9 0 1 120 99229578 99229459 3.620000e-39 172
29 TraesCS2B01G537900 chr6B 92.500 120 9 0 1 120 140838669 140838550 3.620000e-39 172
30 TraesCS2B01G537900 chr6B 92.500 120 9 0 1 120 442710816 442710935 3.620000e-39 172
31 TraesCS2B01G537900 chr2D 92.500 120 9 0 1 120 176115237 176115356 3.620000e-39 172
32 TraesCS2B01G537900 chr4A 94.495 109 6 0 1721 1829 597669134 597669242 4.680000e-38 169
33 TraesCS2B01G537900 chr4D 93.578 109 7 0 1721 1829 6046566 6046458 2.180000e-36 163


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G537900 chr2B 733266240 733268973 2733 True 5049 5049 100.000 1 2734 1 chr2B.!!$R2 2733
1 TraesCS2B01G537900 chr2B 186778530 186779115 585 True 965 965 96.416 120 703 1 chr2B.!!$R1 583
2 TraesCS2B01G537900 chr2B 465515427 465516012 585 False 965 965 96.416 120 703 1 chr2B.!!$F1 583
3 TraesCS2B01G537900 chr7A 87205119 87207437 2318 True 3712 3712 95.531 409 2734 1 chr7A.!!$R1 2325
4 TraesCS2B01G537900 chr7A 204585876 204588185 2309 False 3650 3650 95.164 420 2734 1 chr7A.!!$F1 2314
5 TraesCS2B01G537900 chr7D 104002235 104004468 2233 False 3639 3639 96.068 456 2690 1 chr7D.!!$F1 2234
6 TraesCS2B01G537900 chr7D 549497831 549498416 585 False 942 942 95.741 120 703 1 chr7D.!!$F2 583
7 TraesCS2B01G537900 chr2A 92871394 92873717 2323 True 3637 3637 94.895 407 2734 1 chr2A.!!$R1 2327
8 TraesCS2B01G537900 chr2A 759627643 759630550 2907 True 1853 2837 94.607 410 2734 2 chr2A.!!$R2 2324
9 TraesCS2B01G537900 chr5B 633446549 633448823 2274 False 3502 3502 94.435 456 2734 1 chr5B.!!$F1 2278
10 TraesCS2B01G537900 chr5B 152509965 152510549 584 True 979 979 96.923 120 703 1 chr5B.!!$R1 583
11 TraesCS2B01G537900 chrUn 68603105 68604119 1014 False 1729 1729 97.438 1721 2734 1 chrUn.!!$F1 1013
12 TraesCS2B01G537900 chrUn 105260730 105261319 589 False 953 953 95.784 112 703 1 chrUn.!!$F2 591
13 TraesCS2B01G537900 chr6A 355527891 355528792 901 False 1539 1539 97.453 1832 2734 1 chr6A.!!$F1 902
14 TraesCS2B01G537900 chr6A 464308542 464309374 832 False 1304 1304 95.084 120 944 1 chr6A.!!$F2 824
15 TraesCS2B01G537900 chr1A 368719168 368720069 901 True 1539 1539 97.453 1832 2734 1 chr1A.!!$R1 902
16 TraesCS2B01G537900 chr7B 256347986 256348572 586 True 944 944 95.741 119 703 1 chr7B.!!$R1 584
17 TraesCS2B01G537900 chr5A 532809280 532809871 591 True 941 941 95.439 116 703 1 chr5A.!!$R1 587
18 TraesCS2B01G537900 chr1D 489737430 489738016 586 True 937 937 95.578 120 703 1 chr1D.!!$R1 583
19 TraesCS2B01G537900 chr3D 580722972 580723753 781 True 806 806 85.912 955 1717 1 chr3D.!!$R1 762
20 TraesCS2B01G537900 chr3B 777989783 777990517 734 False 640 640 82.946 959 1708 1 chr3B.!!$F2 749

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
100 101 0.040958 CAGCACCAAGAAGTCAACGC 60.041 55.000 0.00 0.0 0.0 4.84 F
104 105 0.878961 ACCAAGAAGTCAACGCGGTC 60.879 55.000 12.47 0.0 0.0 4.79 F
337 344 1.374631 GCATCCAGACACAGTGCGA 60.375 57.895 0.00 0.0 0.0 5.10 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1219 1847 1.216977 CGACCTGGGCGTTGTATGA 59.783 57.895 15.33 0.00 0.00 2.15 R
1223 1851 4.309950 GACCGACCTGGGCGTTGT 62.310 66.667 22.31 12.75 44.64 3.32 R
2111 2789 1.016627 CCGTTGATCCATGCGAATGT 58.983 50.000 1.88 0.00 0.00 2.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.814280 GTTCAAGACGAGTTCCCTGA 57.186 50.000 0.00 0.00 0.00 3.86
20 21 2.405172 GTTCAAGACGAGTTCCCTGAC 58.595 52.381 0.00 0.00 0.00 3.51
21 22 0.596577 TCAAGACGAGTTCCCTGACG 59.403 55.000 0.00 0.00 0.00 4.35
22 23 0.596577 CAAGACGAGTTCCCTGACGA 59.403 55.000 0.00 0.00 0.00 4.20
23 24 0.882474 AAGACGAGTTCCCTGACGAG 59.118 55.000 0.00 0.00 0.00 4.18
24 25 1.153997 GACGAGTTCCCTGACGAGC 60.154 63.158 0.00 0.00 0.00 5.03
25 26 1.863662 GACGAGTTCCCTGACGAGCA 61.864 60.000 0.00 0.00 0.00 4.26
26 27 1.251527 ACGAGTTCCCTGACGAGCAT 61.252 55.000 0.00 0.00 0.00 3.79
27 28 0.526524 CGAGTTCCCTGACGAGCATC 60.527 60.000 0.00 0.00 0.00 3.91
28 29 0.179097 GAGTTCCCTGACGAGCATCC 60.179 60.000 0.00 0.00 0.00 3.51
29 30 0.616111 AGTTCCCTGACGAGCATCCT 60.616 55.000 0.00 0.00 0.00 3.24
30 31 0.460987 GTTCCCTGACGAGCATCCTG 60.461 60.000 0.00 0.00 0.00 3.86
31 32 2.202987 CCCTGACGAGCATCCTGC 60.203 66.667 0.00 0.00 45.46 4.85
32 33 2.202987 CCTGACGAGCATCCTGCC 60.203 66.667 0.00 0.00 46.52 4.85
33 34 2.729479 CCTGACGAGCATCCTGCCT 61.729 63.158 0.00 0.00 46.52 4.75
34 35 1.395045 CCTGACGAGCATCCTGCCTA 61.395 60.000 0.00 0.00 46.52 3.93
35 36 0.249238 CTGACGAGCATCCTGCCTAC 60.249 60.000 0.00 0.00 46.52 3.18
36 37 1.299468 GACGAGCATCCTGCCTACG 60.299 63.158 0.00 2.99 46.52 3.51
37 38 2.005960 GACGAGCATCCTGCCTACGT 62.006 60.000 13.29 13.29 46.52 3.57
38 39 1.299468 CGAGCATCCTGCCTACGTC 60.299 63.158 0.00 0.00 46.52 4.34
39 40 1.816537 GAGCATCCTGCCTACGTCA 59.183 57.895 0.00 0.00 46.52 4.35
40 41 0.390860 GAGCATCCTGCCTACGTCAT 59.609 55.000 0.00 0.00 46.52 3.06
41 42 0.390860 AGCATCCTGCCTACGTCATC 59.609 55.000 0.00 0.00 46.52 2.92
42 43 0.390860 GCATCCTGCCTACGTCATCT 59.609 55.000 0.00 0.00 37.42 2.90
43 44 1.202580 GCATCCTGCCTACGTCATCTT 60.203 52.381 0.00 0.00 37.42 2.40
44 45 2.743183 GCATCCTGCCTACGTCATCTTT 60.743 50.000 0.00 0.00 37.42 2.52
45 46 3.492656 GCATCCTGCCTACGTCATCTTTA 60.493 47.826 0.00 0.00 37.42 1.85
46 47 3.795623 TCCTGCCTACGTCATCTTTAC 57.204 47.619 0.00 0.00 0.00 2.01
47 48 3.093814 TCCTGCCTACGTCATCTTTACA 58.906 45.455 0.00 0.00 0.00 2.41
48 49 3.512329 TCCTGCCTACGTCATCTTTACAA 59.488 43.478 0.00 0.00 0.00 2.41
49 50 3.865745 CCTGCCTACGTCATCTTTACAAG 59.134 47.826 0.00 0.00 0.00 3.16
50 51 3.259064 TGCCTACGTCATCTTTACAAGC 58.741 45.455 0.00 0.00 0.00 4.01
51 52 2.608090 GCCTACGTCATCTTTACAAGCC 59.392 50.000 0.00 0.00 0.00 4.35
52 53 3.857052 CCTACGTCATCTTTACAAGCCA 58.143 45.455 0.00 0.00 0.00 4.75
53 54 3.865745 CCTACGTCATCTTTACAAGCCAG 59.134 47.826 0.00 0.00 0.00 4.85
54 55 2.076863 ACGTCATCTTTACAAGCCAGC 58.923 47.619 0.00 0.00 0.00 4.85
55 56 1.398390 CGTCATCTTTACAAGCCAGCC 59.602 52.381 0.00 0.00 0.00 4.85
56 57 1.745653 GTCATCTTTACAAGCCAGCCC 59.254 52.381 0.00 0.00 0.00 5.19
57 58 0.734889 CATCTTTACAAGCCAGCCCG 59.265 55.000 0.00 0.00 0.00 6.13
58 59 0.618458 ATCTTTACAAGCCAGCCCGA 59.382 50.000 0.00 0.00 0.00 5.14
59 60 0.398696 TCTTTACAAGCCAGCCCGAA 59.601 50.000 0.00 0.00 0.00 4.30
60 61 0.804989 CTTTACAAGCCAGCCCGAAG 59.195 55.000 0.00 0.00 0.00 3.79
61 62 0.398696 TTTACAAGCCAGCCCGAAGA 59.601 50.000 0.00 0.00 0.00 2.87
62 63 0.321298 TTACAAGCCAGCCCGAAGAC 60.321 55.000 0.00 0.00 0.00 3.01
63 64 2.180159 TACAAGCCAGCCCGAAGACC 62.180 60.000 0.00 0.00 0.00 3.85
64 65 4.394712 AAGCCAGCCCGAAGACCG 62.395 66.667 0.00 0.00 38.18 4.79
92 93 2.664851 CGCCGACAGCACCAAGAA 60.665 61.111 0.00 0.00 44.04 2.52
93 94 2.671177 CGCCGACAGCACCAAGAAG 61.671 63.158 0.00 0.00 44.04 2.85
94 95 1.598130 GCCGACAGCACCAAGAAGT 60.598 57.895 0.00 0.00 42.97 3.01
95 96 1.569479 GCCGACAGCACCAAGAAGTC 61.569 60.000 0.00 0.00 42.97 3.01
96 97 0.249868 CCGACAGCACCAAGAAGTCA 60.250 55.000 0.00 0.00 0.00 3.41
97 98 1.581934 CGACAGCACCAAGAAGTCAA 58.418 50.000 0.00 0.00 0.00 3.18
98 99 1.261619 CGACAGCACCAAGAAGTCAAC 59.738 52.381 0.00 0.00 0.00 3.18
99 100 1.261619 GACAGCACCAAGAAGTCAACG 59.738 52.381 0.00 0.00 0.00 4.10
100 101 0.040958 CAGCACCAAGAAGTCAACGC 60.041 55.000 0.00 0.00 0.00 4.84
101 102 1.082756 GCACCAAGAAGTCAACGCG 60.083 57.895 3.53 3.53 0.00 6.01
102 103 1.569493 CACCAAGAAGTCAACGCGG 59.431 57.895 12.47 0.00 0.00 6.46
103 104 1.145377 ACCAAGAAGTCAACGCGGT 59.855 52.632 12.47 0.00 0.00 5.68
104 105 0.878961 ACCAAGAAGTCAACGCGGTC 60.879 55.000 12.47 0.00 0.00 4.79
105 106 1.487231 CAAGAAGTCAACGCGGTCG 59.513 57.895 12.47 0.00 42.43 4.79
106 107 2.308039 AAGAAGTCAACGCGGTCGC 61.308 57.895 12.47 5.16 39.84 5.19
107 108 3.774702 GAAGTCAACGCGGTCGCC 61.775 66.667 12.47 0.00 39.84 5.54
108 109 4.295119 AAGTCAACGCGGTCGCCT 62.295 61.111 12.47 0.00 39.84 5.52
109 110 4.719369 AGTCAACGCGGTCGCCTC 62.719 66.667 12.47 0.00 39.84 4.70
337 344 1.374631 GCATCCAGACACAGTGCGA 60.375 57.895 0.00 0.00 0.00 5.10
378 385 3.723348 GGCGCACCTGTCGGAAAC 61.723 66.667 10.83 0.00 0.00 2.78
707 723 2.579201 CGAGCCACCTTCCACGAT 59.421 61.111 0.00 0.00 0.00 3.73
973 989 3.699894 CACCACTCTCCAGCCGCT 61.700 66.667 0.00 0.00 0.00 5.52
1078 1705 2.045045 CATTCCGCCTGGGCTTCA 60.045 61.111 10.04 0.00 39.32 3.02
1223 1851 1.748403 GCGCCACCATCCTCTCATA 59.252 57.895 0.00 0.00 0.00 2.15
1395 2044 1.730501 TCTCGTCGTAGGTTGTCGAT 58.269 50.000 0.00 0.00 38.32 3.59
1719 2393 1.202521 TCAGTCAGTGTGCATTCACGT 60.203 47.619 2.14 0.00 46.01 4.49
1900 2574 9.817365 CACTACTTCTGATATTGTTTTTCAGTG 57.183 33.333 0.00 0.00 38.39 3.66
2129 2807 2.830772 AACATTCGCATGGATCAACG 57.169 45.000 0.00 0.00 34.27 4.10
2143 2821 9.522804 GCATGGATCAACGGTTATTTTATTTTA 57.477 29.630 0.00 0.00 0.00 1.52
2272 2950 7.040062 TGGCATGCAAGTACTACTTTTACATTT 60.040 33.333 21.36 0.00 36.03 2.32
2496 3176 1.401552 GTTCATTTGCGGCAGCTATCA 59.598 47.619 10.92 0.00 45.42 2.15
2699 3379 4.895889 AGTAGTCTATATTCCAGCTGTGCA 59.104 41.667 13.81 0.00 0.00 4.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.405172 GTCAGGGAACTCGTCTTGAAC 58.595 52.381 0.00 0.00 40.21 3.18
1 2 1.000607 CGTCAGGGAACTCGTCTTGAA 60.001 52.381 0.00 0.00 40.21 2.69
3 4 0.596577 TCGTCAGGGAACTCGTCTTG 59.403 55.000 0.00 0.00 40.21 3.02
4 5 0.882474 CTCGTCAGGGAACTCGTCTT 59.118 55.000 0.00 0.00 40.21 3.01
5 6 1.587933 GCTCGTCAGGGAACTCGTCT 61.588 60.000 0.00 0.00 40.21 4.18
6 7 1.153997 GCTCGTCAGGGAACTCGTC 60.154 63.158 0.00 0.00 40.21 4.20
8 9 0.526524 GATGCTCGTCAGGGAACTCG 60.527 60.000 0.00 0.00 40.21 4.18
9 10 0.179097 GGATGCTCGTCAGGGAACTC 60.179 60.000 0.00 0.00 40.21 3.01
10 11 0.616111 AGGATGCTCGTCAGGGAACT 60.616 55.000 0.00 0.00 46.44 3.01
11 12 0.460987 CAGGATGCTCGTCAGGGAAC 60.461 60.000 0.00 0.00 0.00 3.62
12 13 1.900351 CAGGATGCTCGTCAGGGAA 59.100 57.895 0.00 0.00 0.00 3.97
13 14 3.621225 CAGGATGCTCGTCAGGGA 58.379 61.111 0.00 0.00 0.00 4.20
24 25 2.898729 AAGATGACGTAGGCAGGATG 57.101 50.000 0.00 0.00 40.87 3.51
25 26 3.704566 TGTAAAGATGACGTAGGCAGGAT 59.295 43.478 0.00 0.00 0.00 3.24
26 27 3.093814 TGTAAAGATGACGTAGGCAGGA 58.906 45.455 0.00 0.00 0.00 3.86
27 28 3.520290 TGTAAAGATGACGTAGGCAGG 57.480 47.619 0.00 0.00 0.00 4.85
42 43 0.398696 TCTTCGGGCTGGCTTGTAAA 59.601 50.000 0.00 0.00 0.00 2.01
43 44 0.321298 GTCTTCGGGCTGGCTTGTAA 60.321 55.000 0.00 0.00 0.00 2.41
44 45 1.295423 GTCTTCGGGCTGGCTTGTA 59.705 57.895 0.00 0.00 0.00 2.41
45 46 2.032681 GTCTTCGGGCTGGCTTGT 59.967 61.111 0.00 0.00 0.00 3.16
46 47 2.747855 GGTCTTCGGGCTGGCTTG 60.748 66.667 0.00 0.00 0.00 4.01
47 48 4.394712 CGGTCTTCGGGCTGGCTT 62.395 66.667 0.00 0.00 34.75 4.35
75 76 2.664851 TTCTTGGTGCTGTCGGCG 60.665 61.111 0.00 0.00 45.43 6.46
76 77 1.569479 GACTTCTTGGTGCTGTCGGC 61.569 60.000 0.00 0.00 42.22 5.54
77 78 0.249868 TGACTTCTTGGTGCTGTCGG 60.250 55.000 0.00 0.00 0.00 4.79
78 79 1.261619 GTTGACTTCTTGGTGCTGTCG 59.738 52.381 0.00 0.00 0.00 4.35
79 80 1.261619 CGTTGACTTCTTGGTGCTGTC 59.738 52.381 0.00 0.00 0.00 3.51
80 81 1.299541 CGTTGACTTCTTGGTGCTGT 58.700 50.000 0.00 0.00 0.00 4.40
81 82 0.040958 GCGTTGACTTCTTGGTGCTG 60.041 55.000 0.00 0.00 0.00 4.41
82 83 1.498865 CGCGTTGACTTCTTGGTGCT 61.499 55.000 0.00 0.00 0.00 4.40
83 84 1.082756 CGCGTTGACTTCTTGGTGC 60.083 57.895 0.00 0.00 0.00 5.01
84 85 1.157870 ACCGCGTTGACTTCTTGGTG 61.158 55.000 4.92 0.00 0.00 4.17
85 86 0.878961 GACCGCGTTGACTTCTTGGT 60.879 55.000 4.92 0.00 0.00 3.67
86 87 1.860078 GACCGCGTTGACTTCTTGG 59.140 57.895 4.92 0.00 0.00 3.61
87 88 1.487231 CGACCGCGTTGACTTCTTG 59.513 57.895 4.92 0.00 0.00 3.02
88 89 2.308039 GCGACCGCGTTGACTTCTT 61.308 57.895 4.92 0.00 40.36 2.52
89 90 2.733593 GCGACCGCGTTGACTTCT 60.734 61.111 4.92 0.00 40.36 2.85
90 91 3.774702 GGCGACCGCGTTGACTTC 61.775 66.667 4.92 0.00 43.06 3.01
91 92 4.295119 AGGCGACCGCGTTGACTT 62.295 61.111 4.92 0.00 43.06 3.01
92 93 4.719369 GAGGCGACCGCGTTGACT 62.719 66.667 10.90 4.51 38.14 3.41
101 102 4.717313 GGGGTGTTGGAGGCGACC 62.717 72.222 0.00 0.00 0.00 4.79
102 103 4.717313 GGGGGTGTTGGAGGCGAC 62.717 72.222 0.00 0.00 0.00 5.19
105 106 2.228480 TAGTGGGGGTGTTGGAGGC 61.228 63.158 0.00 0.00 0.00 4.70
106 107 0.840722 AGTAGTGGGGGTGTTGGAGG 60.841 60.000 0.00 0.00 0.00 4.30
107 108 1.831736 CTAGTAGTGGGGGTGTTGGAG 59.168 57.143 0.00 0.00 0.00 3.86
108 109 1.433985 TCTAGTAGTGGGGGTGTTGGA 59.566 52.381 0.00 0.00 0.00 3.53
109 110 1.946984 TCTAGTAGTGGGGGTGTTGG 58.053 55.000 0.00 0.00 0.00 3.77
110 111 4.360951 TTTTCTAGTAGTGGGGGTGTTG 57.639 45.455 0.00 0.00 0.00 3.33
378 385 2.704725 AAACAACATTAGTGGCGCAG 57.295 45.000 10.83 0.00 0.00 5.18
921 937 4.021925 GCACCTTGGCGGAGACCT 62.022 66.667 0.00 0.00 36.31 3.85
1219 1847 1.216977 CGACCTGGGCGTTGTATGA 59.783 57.895 15.33 0.00 0.00 2.15
1223 1851 4.309950 GACCGACCTGGGCGTTGT 62.310 66.667 22.31 12.75 44.64 3.32
1908 2583 4.949856 AGAACTGAAAGAAAAAGGTGCAGA 59.050 37.500 0.00 0.00 37.43 4.26
2111 2789 1.016627 CCGTTGATCCATGCGAATGT 58.983 50.000 1.88 0.00 0.00 2.71
2143 2821 7.384524 TCATGATCTGAACTTTATCCTCCAT 57.615 36.000 0.00 0.00 0.00 3.41
2272 2950 8.637099 TGTCAAATTAATTGTTCCTGTCATGAA 58.363 29.630 0.39 0.00 40.11 2.57
2699 3379 3.244457 GGTTCAAGTGGCTACAGGTAGTT 60.244 47.826 2.02 0.00 35.65 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.