Multiple sequence alignment - TraesCS2B01G536100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G536100 chr2B 100.000 7510 0 0 1 7510 731888972 731896481 0.000000e+00 13869.0
1 TraesCS2B01G536100 chr2B 85.664 844 98 14 6669 7510 732012197 732013019 0.000000e+00 867.0
2 TraesCS2B01G536100 chr2B 91.961 622 24 2 3408 4003 523684220 523684841 0.000000e+00 848.0
3 TraesCS2B01G536100 chr2B 85.089 845 102 14 6669 7510 732016963 732017786 0.000000e+00 841.0
4 TraesCS2B01G536100 chr2B 90.048 623 59 2 6882 7504 732038688 732039307 0.000000e+00 804.0
5 TraesCS2B01G536100 chr2B 95.522 67 3 0 3375 3441 523684151 523684217 2.870000e-19 108.0
6 TraesCS2B01G536100 chr2D 93.551 3520 175 26 4013 7510 601599319 601602808 0.000000e+00 5195.0
7 TraesCS2B01G536100 chr2D 91.914 1076 44 19 344 1404 601595817 601596864 0.000000e+00 1465.0
8 TraesCS2B01G536100 chr2D 86.926 849 99 9 6665 7510 601657397 601658236 0.000000e+00 942.0
9 TraesCS2B01G536100 chr2D 89.683 630 63 2 6882 7510 602775109 602774481 0.000000e+00 802.0
10 TraesCS2B01G536100 chr2D 88.312 693 46 22 1700 2371 601597280 601597958 0.000000e+00 798.0
11 TraesCS2B01G536100 chr2D 87.608 694 76 8 6827 7510 601962935 601963628 0.000000e+00 797.0
12 TraesCS2B01G536100 chr2D 89.351 601 35 21 2391 2975 601598051 601598638 0.000000e+00 728.0
13 TraesCS2B01G536100 chr2D 89.429 350 28 5 3 351 601595292 601595633 4.160000e-117 433.0
14 TraesCS2B01G536100 chr2D 86.070 402 20 18 2961 3351 601598655 601599031 4.220000e-107 399.0
15 TraesCS2B01G536100 chr2D 88.850 287 25 6 3733 4019 601598961 601599240 5.580000e-91 346.0
16 TraesCS2B01G536100 chr2D 88.991 109 11 1 1577 1684 601597099 601597207 4.730000e-27 134.0
17 TraesCS2B01G536100 chr2A 93.985 1995 90 18 4013 5998 734889853 734891826 0.000000e+00 2992.0
18 TraesCS2B01G536100 chr2A 94.479 1467 63 7 6048 7510 734891828 734893280 0.000000e+00 2244.0
19 TraesCS2B01G536100 chr2A 91.901 1457 68 23 3 1438 734885897 734887324 0.000000e+00 1991.0
20 TraesCS2B01G536100 chr2A 83.295 1736 119 73 1577 3235 734887515 734889156 0.000000e+00 1441.0
21 TraesCS2B01G536100 chr2A 90.224 624 59 2 6888 7510 735398336 735397714 0.000000e+00 813.0
22 TraesCS2B01G536100 chr2A 89.841 630 62 2 6882 7510 735561856 735561228 0.000000e+00 808.0
23 TraesCS2B01G536100 chr2A 84.882 635 57 14 3409 4019 734889155 734889774 8.340000e-169 604.0
24 TraesCS2B01G536100 chr2A 78.137 526 65 29 3538 4019 731543727 731544246 9.530000e-74 289.0
25 TraesCS2B01G536100 chr2A 89.189 148 11 1 4772 4919 731544878 731545020 5.990000e-41 180.0
26 TraesCS2B01G536100 chr2A 77.287 317 42 16 3270 3565 731543917 731544224 7.800000e-35 159.0
27 TraesCS2B01G536100 chr7B 95.199 604 20 2 3408 4003 31062204 31062806 0.000000e+00 946.0
28 TraesCS2B01G536100 chr7B 83.890 838 107 12 5055 5869 674306577 674307409 0.000000e+00 774.0
29 TraesCS2B01G536100 chr7B 87.500 256 32 0 1144 1399 674304235 674304490 5.700000e-76 296.0
30 TraesCS2B01G536100 chr7B 82.099 324 51 6 6342 6663 674310020 674310338 3.450000e-68 270.0
31 TraesCS2B01G536100 chr7B 87.912 182 22 0 2035 2216 674305361 674305542 1.640000e-51 215.0
32 TraesCS2B01G536100 chr7B 90.541 74 7 0 2298 2371 674305645 674305718 1.720000e-16 99.0
33 TraesCS2B01G536100 chrUn 89.841 630 60 3 6882 7510 379978999 379978373 0.000000e+00 806.0
34 TraesCS2B01G536100 chrUn 81.731 104 12 4 6694 6796 15280094 15279997 6.250000e-11 80.5
35 TraesCS2B01G536100 chrUn 81.731 104 12 4 6694 6796 258625867 258625770 6.250000e-11 80.5
36 TraesCS2B01G536100 chrUn 81.731 104 12 4 6694 6796 388793483 388793386 6.250000e-11 80.5
37 TraesCS2B01G536100 chrUn 81.731 104 12 4 6694 6796 428013434 428013337 6.250000e-11 80.5
38 TraesCS2B01G536100 chr7D 83.014 836 116 15 5055 5869 596237882 596238712 0.000000e+00 734.0
39 TraesCS2B01G536100 chr7D 86.905 252 33 0 1148 1399 596234340 596234591 4.440000e-72 283.0
40 TraesCS2B01G536100 chr7D 82.555 321 52 3 6343 6663 596241021 596241337 5.740000e-71 279.0
41 TraesCS2B01G536100 chr7D 85.333 225 27 3 1716 1934 596235160 596235384 2.110000e-55 228.0
42 TraesCS2B01G536100 chr7D 85.849 212 28 2 1720 1930 51429274 51429484 2.730000e-54 224.0
43 TraesCS2B01G536100 chr7D 84.746 177 27 0 2040 2216 596235489 596235665 2.150000e-40 178.0
44 TraesCS2B01G536100 chr7D 93.878 49 3 0 1346 1394 51428912 51428960 2.910000e-09 75.0
45 TraesCS2B01G536100 chr7A 82.987 817 112 12 5072 5866 689320372 689321183 0.000000e+00 713.0
46 TraesCS2B01G536100 chr7A 88.095 252 30 0 1148 1399 689315823 689316074 4.400000e-77 300.0
47 TraesCS2B01G536100 chr7A 85.849 212 28 2 1720 1930 53907210 53907420 2.730000e-54 224.0
48 TraesCS2B01G536100 chr7A 78.056 360 55 21 2033 2371 689316982 689317338 9.880000e-49 206.0
49 TraesCS2B01G536100 chr7A 93.878 49 3 0 1346 1394 53906854 53906902 2.910000e-09 75.0
50 TraesCS2B01G536100 chr4A 86.603 209 26 2 1723 1930 665628061 665627854 5.860000e-56 230.0
51 TraesCS2B01G536100 chr4A 81.333 225 35 7 1723 1944 21219906 21219686 7.740000e-40 176.0
52 TraesCS2B01G536100 chr4A 93.878 49 3 0 1346 1394 665628434 665628386 2.910000e-09 75.0
53 TraesCS2B01G536100 chr4D 81.223 229 36 5 1720 1945 446137938 446138162 2.150000e-40 178.0
54 TraesCS2B01G536100 chr4B 80.349 229 38 6 1720 1945 558044760 558044984 4.660000e-37 167.0
55 TraesCS2B01G536100 chr3B 77.368 190 32 11 1214 1397 523156901 523156717 1.330000e-17 102.0
56 TraesCS2B01G536100 chr3A 77.368 190 32 11 1214 1397 516806112 516805928 1.330000e-17 102.0
57 TraesCS2B01G536100 chr6D 76.000 200 30 17 1209 1397 381525321 381525129 3.730000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G536100 chr2B 731888972 731896481 7509 False 13869.000000 13869 100.000000 1 7510 1 chr2B.!!$F1 7509
1 TraesCS2B01G536100 chr2B 732012197 732017786 5589 False 854.000000 867 85.376500 6669 7510 2 chr2B.!!$F4 841
2 TraesCS2B01G536100 chr2B 732038688 732039307 619 False 804.000000 804 90.048000 6882 7504 1 chr2B.!!$F2 622
3 TraesCS2B01G536100 chr2B 523684151 523684841 690 False 478.000000 848 93.741500 3375 4003 2 chr2B.!!$F3 628
4 TraesCS2B01G536100 chr2D 601595292 601602808 7516 False 1187.250000 5195 89.558500 3 7510 8 chr2D.!!$F3 7507
5 TraesCS2B01G536100 chr2D 601657397 601658236 839 False 942.000000 942 86.926000 6665 7510 1 chr2D.!!$F1 845
6 TraesCS2B01G536100 chr2D 602774481 602775109 628 True 802.000000 802 89.683000 6882 7510 1 chr2D.!!$R1 628
7 TraesCS2B01G536100 chr2D 601962935 601963628 693 False 797.000000 797 87.608000 6827 7510 1 chr2D.!!$F2 683
8 TraesCS2B01G536100 chr2A 734885897 734893280 7383 False 1854.400000 2992 89.708400 3 7510 5 chr2A.!!$F2 7507
9 TraesCS2B01G536100 chr2A 735397714 735398336 622 True 813.000000 813 90.224000 6888 7510 1 chr2A.!!$R1 622
10 TraesCS2B01G536100 chr2A 735561228 735561856 628 True 808.000000 808 89.841000 6882 7510 1 chr2A.!!$R2 628
11 TraesCS2B01G536100 chr2A 731543727 731545020 1293 False 209.333333 289 81.537667 3270 4919 3 chr2A.!!$F1 1649
12 TraesCS2B01G536100 chr7B 31062204 31062806 602 False 946.000000 946 95.199000 3408 4003 1 chr7B.!!$F1 595
13 TraesCS2B01G536100 chr7B 674304235 674310338 6103 False 330.800000 774 86.388400 1144 6663 5 chr7B.!!$F2 5519
14 TraesCS2B01G536100 chrUn 379978373 379978999 626 True 806.000000 806 89.841000 6882 7510 1 chrUn.!!$R3 628
15 TraesCS2B01G536100 chr7D 596234340 596241337 6997 False 340.400000 734 84.510600 1148 6663 5 chr7D.!!$F2 5515
16 TraesCS2B01G536100 chr7A 689315823 689321183 5360 False 406.333333 713 83.046000 1148 5866 3 chr7A.!!$F2 4718

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
908 1125 0.040157 TACATATACGGACACGCGGC 60.040 55.000 12.47 0.00 46.04 6.53 F
1574 1863 0.032403 CTAACGACCCGTGACCAACA 59.968 55.000 0.00 0.00 39.99 3.33 F
2059 2728 0.109342 GGCTGGGGTTCATCATCGAT 59.891 55.000 0.00 0.00 0.00 3.59 F
2860 3663 0.249398 AGGACGGTTGGTAGATGTGC 59.751 55.000 0.00 0.00 0.00 4.57 F
2927 3733 0.908910 AACGGATGGATGCACACCTA 59.091 50.000 12.09 1.23 0.00 3.08 F
3081 3924 1.058903 GTTCGATTCGCAACGAGGC 59.941 57.895 0.00 0.00 39.59 4.70 F
4372 7267 0.750850 CCGTCATCGTATCCACCCTT 59.249 55.000 0.00 0.00 35.01 3.95 F
4920 7833 0.889994 TGAACATTGTGGGCTCATGC 59.110 50.000 0.00 0.00 38.76 4.06 F
6032 11495 0.251077 AGCTCAGTTTCCTGCTTGGG 60.251 55.000 0.00 0.00 38.66 4.12 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2244 2914 0.446222 AATGAACCGTACGTGCATGC 59.554 50.000 11.82 11.82 40.16 4.06 R
3257 4108 0.398318 AGTTGCACCAGAGGAAGACC 59.602 55.000 0.00 0.00 0.00 3.85 R
3260 4111 1.347707 TGGTAGTTGCACCAGAGGAAG 59.652 52.381 0.00 0.00 43.76 3.46 R
4088 6978 1.152963 CAGCCCCGGGTATCAAAGG 60.153 63.158 21.85 1.58 0.00 3.11 R
4283 7178 1.362768 CTCTGCATACACACACGCAT 58.637 50.000 0.00 0.00 33.15 4.73 R
5060 7976 0.982852 ATGATGCAGAACCGGGGAGA 60.983 55.000 6.32 0.00 0.00 3.71 R
5613 8559 1.439543 ACCCAGGAACTCTTTGAGCT 58.560 50.000 0.00 0.00 34.60 4.09 R
6419 11905 0.179129 CCGGCCTGAAATGATTGTGC 60.179 55.000 0.00 0.00 0.00 4.57 R
7406 12905 0.320073 TTACAGCCGTCCAAGGAACG 60.320 55.000 0.00 0.00 0.00 3.95 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 2.279741 GTATGTGCGCATGAGAAGGAA 58.720 47.619 22.84 0.00 36.58 3.36
163 164 2.159382 AGCCCAACAAAGTTGATACGG 58.841 47.619 11.19 5.24 0.00 4.02
202 203 0.727970 TGTGACAAACGGAAACCACG 59.272 50.000 0.00 0.00 37.36 4.94
298 300 4.659111 TTCCAAATCCGTAGATTAGCGA 57.341 40.909 0.00 0.00 42.03 4.93
299 301 3.973657 TCCAAATCCGTAGATTAGCGAC 58.026 45.455 0.00 0.00 42.03 5.19
301 303 3.369385 CAAATCCGTAGATTAGCGACGT 58.631 45.455 2.32 0.00 42.03 4.34
302 304 4.530388 CAAATCCGTAGATTAGCGACGTA 58.470 43.478 2.32 0.00 42.03 3.57
303 305 4.401525 AATCCGTAGATTAGCGACGTAG 57.598 45.455 2.32 0.00 42.96 3.51
307 309 3.154489 CGTAGATTAGCGACGTAGCATC 58.846 50.000 22.79 16.48 40.18 3.91
308 310 3.363673 CGTAGATTAGCGACGTAGCATCA 60.364 47.826 22.79 6.18 40.18 3.07
309 311 3.924918 AGATTAGCGACGTAGCATCAT 57.075 42.857 22.79 10.75 40.15 2.45
310 312 3.569548 AGATTAGCGACGTAGCATCATG 58.430 45.455 22.79 0.00 40.15 3.07
311 313 1.487482 TTAGCGACGTAGCATCATGC 58.513 50.000 22.79 0.00 45.46 4.06
323 325 1.067635 GCATCATGCGGAAACACCTTT 60.068 47.619 0.00 0.00 31.71 3.11
354 356 6.369065 CGCTTTATAGACCATTTGACTATCCC 59.631 42.308 0.00 0.00 0.00 3.85
356 358 7.474936 GCTTTATAGACCATTTGACTATCCCCT 60.475 40.741 0.00 0.00 0.00 4.79
362 556 3.495100 CCATTTGACTATCCCCTTCTCCG 60.495 52.174 0.00 0.00 0.00 4.63
515 714 4.819105 ACACATATATATGGTCGGGTGG 57.181 45.455 23.44 7.62 38.00 4.61
516 715 3.055385 ACACATATATATGGTCGGGTGGC 60.055 47.826 23.44 0.00 38.00 5.01
517 716 3.055458 CACATATATATGGTCGGGTGGCA 60.055 47.826 23.44 0.00 38.00 4.92
813 1018 6.134061 CGTACCACTTTTCTTCTTTTGTAGC 58.866 40.000 0.00 0.00 0.00 3.58
874 1091 2.842058 CCCAGGCCCATCTCATCC 59.158 66.667 0.00 0.00 0.00 3.51
877 1094 3.564218 AGGCCCATCTCATCCCGC 61.564 66.667 0.00 0.00 0.00 6.13
878 1095 4.650377 GGCCCATCTCATCCCGCC 62.650 72.222 0.00 0.00 0.00 6.13
879 1096 4.650377 GCCCATCTCATCCCGCCC 62.650 72.222 0.00 0.00 0.00 6.13
880 1097 3.958860 CCCATCTCATCCCGCCCC 61.959 72.222 0.00 0.00 0.00 5.80
881 1098 2.851102 CCATCTCATCCCGCCCCT 60.851 66.667 0.00 0.00 0.00 4.79
882 1099 2.746359 CATCTCATCCCGCCCCTC 59.254 66.667 0.00 0.00 0.00 4.30
883 1100 2.142761 CATCTCATCCCGCCCCTCA 61.143 63.158 0.00 0.00 0.00 3.86
884 1101 1.151943 ATCTCATCCCGCCCCTCAT 60.152 57.895 0.00 0.00 0.00 2.90
885 1102 1.197430 ATCTCATCCCGCCCCTCATC 61.197 60.000 0.00 0.00 0.00 2.92
886 1103 2.040988 TCATCCCGCCCCTCATCA 60.041 61.111 0.00 0.00 0.00 3.07
887 1104 1.462043 TCATCCCGCCCCTCATCAT 60.462 57.895 0.00 0.00 0.00 2.45
888 1105 0.178906 TCATCCCGCCCCTCATCATA 60.179 55.000 0.00 0.00 0.00 2.15
907 1124 2.624316 ATACATATACGGACACGCGG 57.376 50.000 12.47 1.27 46.04 6.46
908 1125 0.040157 TACATATACGGACACGCGGC 60.040 55.000 12.47 0.00 46.04 6.53
909 1126 1.007734 CATATACGGACACGCGGCT 60.008 57.895 12.47 0.00 46.04 5.52
910 1127 1.007734 ATATACGGACACGCGGCTG 60.008 57.895 12.47 7.14 46.04 4.85
911 1128 1.731433 ATATACGGACACGCGGCTGT 61.731 55.000 12.47 13.10 46.04 4.40
912 1129 2.601628 TATACGGACACGCGGCTGTG 62.602 60.000 12.47 18.56 46.04 3.66
976 1198 2.097038 CACCAAAGCTCTCTCGGCG 61.097 63.158 0.00 0.00 34.52 6.46
996 1218 1.736696 GCAGCCACAGCGCAATAATTT 60.737 47.619 11.47 0.00 46.67 1.82
1074 1296 3.065306 CCCAACGAGGCAGTGGTA 58.935 61.111 0.00 0.00 35.39 3.25
1404 1635 1.755395 CCCCCAGGCATGTCATGTG 60.755 63.158 14.26 5.67 0.00 3.21
1405 1636 2.420568 CCCCAGGCATGTCATGTGC 61.421 63.158 14.26 2.22 41.78 4.57
1410 1656 0.910338 AGGCATGTCATGTGCTCTCT 59.090 50.000 14.26 1.13 42.16 3.10
1446 1692 0.322456 CTCCCGCCCAAGATTGTTGA 60.322 55.000 0.00 0.00 0.00 3.18
1449 1710 0.378257 CCGCCCAAGATTGTTGATCG 59.622 55.000 0.00 0.00 39.85 3.69
1451 1712 1.463674 GCCCAAGATTGTTGATCGGT 58.536 50.000 0.00 0.00 39.85 4.69
1452 1713 1.818674 GCCCAAGATTGTTGATCGGTT 59.181 47.619 0.00 0.00 39.85 4.44
1453 1714 2.415893 GCCCAAGATTGTTGATCGGTTG 60.416 50.000 0.00 0.00 39.85 3.77
1458 1719 0.442310 ATTGTTGATCGGTTGACGCG 59.558 50.000 3.53 3.53 43.86 6.01
1460 1721 0.039346 TGTTGATCGGTTGACGCGTA 60.039 50.000 13.97 0.00 43.86 4.42
1461 1722 0.364515 GTTGATCGGTTGACGCGTAC 59.635 55.000 13.97 7.89 43.86 3.67
1475 1736 2.812178 GTACGTGCCGTGGCGATT 60.812 61.111 6.37 0.00 45.51 3.34
1476 1737 1.516821 GTACGTGCCGTGGCGATTA 60.517 57.895 6.37 0.00 45.51 1.75
1477 1738 1.226745 TACGTGCCGTGGCGATTAG 60.227 57.895 6.37 0.00 45.51 1.73
1478 1739 3.925238 CGTGCCGTGGCGATTAGC 61.925 66.667 6.37 0.00 45.51 3.09
1518 1785 2.507769 GAAATTGCTGGGCTGCGC 60.508 61.111 10.06 10.06 35.36 6.09
1521 1791 4.728110 ATTGCTGGGCTGCGCTGA 62.728 61.111 23.95 7.47 35.36 4.26
1526 1796 3.060020 CTGGGCTGCGCTGATTTGG 62.060 63.158 19.32 0.00 0.00 3.28
1528 1798 2.342650 GGGCTGCGCTGATTTGGAA 61.343 57.895 19.32 0.00 0.00 3.53
1529 1799 1.669999 GGGCTGCGCTGATTTGGAAT 61.670 55.000 19.32 0.00 0.00 3.01
1530 1800 0.248784 GGCTGCGCTGATTTGGAATC 60.249 55.000 19.32 0.00 0.00 2.52
1531 1801 0.737219 GCTGCGCTGATTTGGAATCT 59.263 50.000 19.32 0.00 0.00 2.40
1532 1802 1.133790 GCTGCGCTGATTTGGAATCTT 59.866 47.619 19.32 0.00 0.00 2.40
1533 1803 2.793933 CTGCGCTGATTTGGAATCTTG 58.206 47.619 9.73 0.00 0.00 3.02
1535 1805 3.342719 TGCGCTGATTTGGAATCTTGTA 58.657 40.909 9.73 0.00 0.00 2.41
1536 1806 3.126858 TGCGCTGATTTGGAATCTTGTAC 59.873 43.478 9.73 0.00 0.00 2.90
1537 1807 3.126858 GCGCTGATTTGGAATCTTGTACA 59.873 43.478 0.00 0.00 0.00 2.90
1538 1808 4.201950 GCGCTGATTTGGAATCTTGTACAT 60.202 41.667 0.00 0.00 0.00 2.29
1539 1809 5.268544 CGCTGATTTGGAATCTTGTACATG 58.731 41.667 0.00 0.00 0.00 3.21
1541 1811 6.238566 CGCTGATTTGGAATCTTGTACATGAT 60.239 38.462 16.39 16.39 0.00 2.45
1543 1813 7.201758 GCTGATTTGGAATCTTGTACATGATCA 60.202 37.037 20.88 14.21 0.00 2.92
1544 1814 8.578448 TGATTTGGAATCTTGTACATGATCAA 57.422 30.769 20.88 18.10 0.00 2.57
1547 1817 8.812513 TTTGGAATCTTGTACATGATCAATCT 57.187 30.769 20.88 8.26 0.00 2.40
1548 1818 8.442632 TTGGAATCTTGTACATGATCAATCTC 57.557 34.615 20.88 14.94 0.00 2.75
1549 1819 6.703165 TGGAATCTTGTACATGATCAATCTCG 59.297 38.462 20.88 0.00 0.00 4.04
1550 1820 6.925718 GGAATCTTGTACATGATCAATCTCGA 59.074 38.462 20.88 0.00 0.00 4.04
1552 1822 8.531622 AATCTTGTACATGATCAATCTCGATC 57.468 34.615 20.88 0.00 41.88 3.69
1555 1825 2.681706 ACATGATCAATCTCGATCCGC 58.318 47.619 0.00 0.00 41.00 5.54
1560 1849 2.401017 TCAATCTCGATCCGCTAACG 57.599 50.000 0.00 0.00 39.67 3.18
1574 1863 0.032403 CTAACGACCCGTGACCAACA 59.968 55.000 0.00 0.00 39.99 3.33
1575 1864 0.463204 TAACGACCCGTGACCAACAA 59.537 50.000 0.00 0.00 39.99 2.83
1579 1880 1.067425 CGACCCGTGACCAACAATCTA 60.067 52.381 0.00 0.00 0.00 1.98
1601 1904 0.249447 GTTTGTGTTCTTGGCAGGGC 60.249 55.000 0.00 0.00 0.00 5.19
1613 1916 2.590007 CAGGGCATCAGCTACGCC 60.590 66.667 10.94 10.94 45.47 5.68
1654 1957 2.743938 GATCATAGGCCTGTGTACGTG 58.256 52.381 26.72 9.14 0.00 4.49
1657 1965 3.293337 TCATAGGCCTGTGTACGTGTAT 58.707 45.455 26.72 0.13 0.00 2.29
1690 2274 5.106987 GCTTTTCATTTCTACCGTCGGTAAA 60.107 40.000 23.80 18.31 37.76 2.01
1693 2277 8.721019 TTTTCATTTCTACCGTCGGTAAATAT 57.279 30.769 23.80 9.95 37.76 1.28
1694 2278 9.814899 TTTTCATTTCTACCGTCGGTAAATATA 57.185 29.630 23.80 12.34 37.76 0.86
1695 2279 8.801715 TTCATTTCTACCGTCGGTAAATATAC 57.198 34.615 23.80 0.00 37.76 1.47
1698 2282 9.897744 CATTTCTACCGTCGGTAAATATACTTA 57.102 33.333 23.80 0.86 37.76 2.24
1699 2283 9.899226 ATTTCTACCGTCGGTAAATATACTTAC 57.101 33.333 23.80 0.00 37.76 2.34
1700 2284 7.117241 TCTACCGTCGGTAAATATACTTACG 57.883 40.000 23.80 8.75 37.76 3.18
1701 2285 5.751243 ACCGTCGGTAAATATACTTACGT 57.249 39.130 17.19 0.00 37.89 3.57
1703 2287 5.147162 CCGTCGGTAAATATACTTACGTCC 58.853 45.833 2.08 0.00 37.89 4.79
1706 2290 6.303970 CGTCGGTAAATATACTTACGTCCATG 59.696 42.308 0.00 0.00 36.39 3.66
1707 2291 7.141363 GTCGGTAAATATACTTACGTCCATGT 58.859 38.462 0.00 0.00 33.36 3.21
1711 2295 7.170320 GGTAAATATACTTACGTCCATGTGTGG 59.830 40.741 0.00 0.00 38.40 4.17
1721 2348 1.211703 TCCATGTGTGGTTCTGTGTGT 59.788 47.619 0.00 0.00 46.16 3.72
1972 2617 1.515304 GCTCGCCACGTCTCTCTTC 60.515 63.158 0.00 0.00 0.00 2.87
1980 2628 2.223829 CCACGTCTCTCTTCAAGTGTGT 60.224 50.000 0.00 0.00 0.00 3.72
2011 2659 2.217038 ATGCACCGGGACTGACACT 61.217 57.895 6.32 0.00 0.00 3.55
2013 2661 1.215647 GCACCGGGACTGACACTAG 59.784 63.158 6.32 0.00 0.00 2.57
2032 2680 6.868864 ACACTAGACACGATAATAATGGATGC 59.131 38.462 0.00 0.00 0.00 3.91
2059 2728 0.109342 GGCTGGGGTTCATCATCGAT 59.891 55.000 0.00 0.00 0.00 3.59
2062 2731 2.689983 GCTGGGGTTCATCATCGATTTT 59.310 45.455 0.00 0.00 0.00 1.82
2206 2875 1.367471 CTCCGTCTTCCAGCACACA 59.633 57.895 0.00 0.00 0.00 3.72
2240 2910 2.105528 CCGTCCGTTACCCATCCG 59.894 66.667 0.00 0.00 0.00 4.18
2244 2914 2.888534 CCGTTACCCATCCGCGTG 60.889 66.667 4.92 0.00 0.00 5.34
2259 2961 3.249999 GTGCATGCACGTACGGTT 58.750 55.556 33.20 0.00 37.19 4.44
2263 2965 0.446222 GCATGCACGTACGGTTCATT 59.554 50.000 21.06 0.00 29.62 2.57
2265 2967 1.062002 CATGCACGTACGGTTCATTCC 59.938 52.381 21.06 0.00 29.62 3.01
2280 2992 3.278574 TCATTCCTGGCTAATGGTTTCG 58.721 45.455 7.92 0.00 35.48 3.46
2287 2999 2.952978 TGGCTAATGGTTTCGTTTGTGT 59.047 40.909 0.00 0.00 0.00 3.72
2288 3000 3.243234 TGGCTAATGGTTTCGTTTGTGTG 60.243 43.478 0.00 0.00 0.00 3.82
2289 3001 3.243267 GGCTAATGGTTTCGTTTGTGTGT 60.243 43.478 0.00 0.00 0.00 3.72
2290 3002 3.728718 GCTAATGGTTTCGTTTGTGTGTG 59.271 43.478 0.00 0.00 0.00 3.82
2291 3003 3.859411 AATGGTTTCGTTTGTGTGTGT 57.141 38.095 0.00 0.00 0.00 3.72
2292 3004 2.620779 TGGTTTCGTTTGTGTGTGTG 57.379 45.000 0.00 0.00 0.00 3.82
2371 3083 2.045438 CGGCCAGGCATGTGGTAA 60.045 61.111 15.19 0.00 40.09 2.85
2373 3085 2.418083 GGCCAGGCATGTGGTAAGC 61.418 63.158 15.19 0.00 40.09 3.09
2644 3446 3.689309 TTATCGCGTTGTCCGTATACA 57.311 42.857 5.77 0.00 39.32 2.29
2673 3475 3.521560 GTTGTATGTGCAGCTAGCTGTA 58.478 45.455 37.91 33.70 45.24 2.74
2709 3511 3.458163 CGGTCGGCTGGGCTAGAA 61.458 66.667 0.43 0.00 0.00 2.10
2710 3512 2.797278 CGGTCGGCTGGGCTAGAAT 61.797 63.158 0.43 0.00 0.00 2.40
2711 3513 1.461091 CGGTCGGCTGGGCTAGAATA 61.461 60.000 0.43 0.00 0.00 1.75
2712 3514 0.318762 GGTCGGCTGGGCTAGAATAG 59.681 60.000 0.43 0.00 43.09 1.73
2713 3515 1.329256 GTCGGCTGGGCTAGAATAGA 58.671 55.000 0.43 0.00 42.77 1.98
2714 3516 1.896465 GTCGGCTGGGCTAGAATAGAT 59.104 52.381 0.43 0.00 42.77 1.98
2715 3517 3.090037 GTCGGCTGGGCTAGAATAGATA 58.910 50.000 0.43 0.00 42.77 1.98
2745 3547 3.259064 CGGCAGAAAATTCTAGGAACGA 58.741 45.455 0.00 0.00 35.34 3.85
2776 3578 1.543208 CGTGCCAGGCCACATATGTAT 60.543 52.381 9.64 0.00 35.47 2.29
2790 3593 7.161404 CCACATATGTATGTTGTATGTAGCCT 58.839 38.462 8.32 0.00 43.99 4.58
2860 3663 0.249398 AGGACGGTTGGTAGATGTGC 59.751 55.000 0.00 0.00 0.00 4.57
2867 3670 3.063452 CGGTTGGTAGATGTGCACAATAC 59.937 47.826 25.72 25.92 0.00 1.89
2927 3733 0.908910 AACGGATGGATGCACACCTA 59.091 50.000 12.09 1.23 0.00 3.08
2984 3823 6.139679 AGATTTTTGATAGTTGACAGGGGA 57.860 37.500 0.00 0.00 0.00 4.81
2985 3824 6.183347 AGATTTTTGATAGTTGACAGGGGAG 58.817 40.000 0.00 0.00 0.00 4.30
2993 3832 2.158608 AGTTGACAGGGGAGAAAGGTTG 60.159 50.000 0.00 0.00 0.00 3.77
3030 3869 3.454375 GTCGTGTTCAGAAAAGAGACCA 58.546 45.455 0.00 0.00 0.00 4.02
3081 3924 1.058903 GTTCGATTCGCAACGAGGC 59.941 57.895 0.00 0.00 39.59 4.70
3159 4002 1.886542 GACCATTGTTTCCACTCCCAC 59.113 52.381 0.00 0.00 0.00 4.61
3223 4074 2.005451 GCTACACAGCTGAATGACTGG 58.995 52.381 23.35 0.00 44.93 4.00
3235 4086 8.412456 CAGCTGAATGACTGGACCTATATATAG 58.588 40.741 8.42 12.18 0.00 1.31
3247 4098 5.283457 CCTATATATAGGTGCTGGCTTCC 57.717 47.826 25.28 0.00 43.95 3.46
3248 4099 4.716784 CCTATATATAGGTGCTGGCTTCCA 59.283 45.833 25.28 0.00 43.95 3.53
3249 4100 5.163364 CCTATATATAGGTGCTGGCTTCCAG 60.163 48.000 25.28 8.45 46.97 3.86
3259 4110 2.978156 TGGCTTCCAGAAATCAAGGT 57.022 45.000 0.00 0.00 0.00 3.50
3260 4111 2.795329 TGGCTTCCAGAAATCAAGGTC 58.205 47.619 0.00 0.00 0.00 3.85
3261 4112 2.376518 TGGCTTCCAGAAATCAAGGTCT 59.623 45.455 0.00 0.00 0.00 3.85
3262 4113 3.181429 TGGCTTCCAGAAATCAAGGTCTT 60.181 43.478 0.00 0.00 0.00 3.01
3263 4114 3.441922 GGCTTCCAGAAATCAAGGTCTTC 59.558 47.826 0.00 0.00 0.00 2.87
3264 4115 3.441922 GCTTCCAGAAATCAAGGTCTTCC 59.558 47.826 0.00 0.00 0.00 3.46
3279 4130 1.623811 TCTTCCTCTGGTGCAACTACC 59.376 52.381 2.04 0.00 41.24 3.18
3297 4148 8.144478 GCAACTACCACTGATCTATTCATCTAA 58.856 37.037 0.00 0.00 32.72 2.10
3298 4149 9.689976 CAACTACCACTGATCTATTCATCTAAG 57.310 37.037 0.00 0.00 32.72 2.18
3327 4183 3.515502 TGCTAGCAGAGGAATAGTGTTGT 59.484 43.478 14.93 0.00 0.00 3.32
3349 4205 3.853355 CCTCTCAAGGCCATACTGATT 57.147 47.619 5.01 0.00 35.37 2.57
3350 4206 4.162040 CCTCTCAAGGCCATACTGATTT 57.838 45.455 5.01 0.00 35.37 2.17
3351 4207 4.530875 CCTCTCAAGGCCATACTGATTTT 58.469 43.478 5.01 0.00 35.37 1.82
3352 4208 4.578105 CCTCTCAAGGCCATACTGATTTTC 59.422 45.833 5.01 0.00 35.37 2.29
3353 4209 4.526970 TCTCAAGGCCATACTGATTTTCC 58.473 43.478 5.01 0.00 0.00 3.13
3354 4210 4.228210 TCTCAAGGCCATACTGATTTTCCT 59.772 41.667 5.01 0.00 0.00 3.36
3355 4211 4.934356 TCAAGGCCATACTGATTTTCCTT 58.066 39.130 5.01 0.00 33.15 3.36
3356 4212 4.949856 TCAAGGCCATACTGATTTTCCTTC 59.050 41.667 5.01 0.00 30.75 3.46
3357 4213 4.870021 AGGCCATACTGATTTTCCTTCT 57.130 40.909 5.01 0.00 0.00 2.85
3358 4214 5.198602 AGGCCATACTGATTTTCCTTCTT 57.801 39.130 5.01 0.00 0.00 2.52
3359 4215 5.196695 AGGCCATACTGATTTTCCTTCTTC 58.803 41.667 5.01 0.00 0.00 2.87
3360 4216 4.339530 GGCCATACTGATTTTCCTTCTTCC 59.660 45.833 0.00 0.00 0.00 3.46
3361 4217 4.949856 GCCATACTGATTTTCCTTCTTCCA 59.050 41.667 0.00 0.00 0.00 3.53
3362 4218 5.067023 GCCATACTGATTTTCCTTCTTCCAG 59.933 44.000 0.00 0.00 0.00 3.86
3363 4219 6.418101 CCATACTGATTTTCCTTCTTCCAGA 58.582 40.000 0.00 0.00 0.00 3.86
3364 4220 6.886459 CCATACTGATTTTCCTTCTTCCAGAA 59.114 38.462 0.00 0.00 32.50 3.02
3365 4221 7.394359 CCATACTGATTTTCCTTCTTCCAGAAA 59.606 37.037 0.00 0.00 33.19 2.52
3366 4222 8.796475 CATACTGATTTTCCTTCTTCCAGAAAA 58.204 33.333 0.00 0.00 42.04 2.29
3367 4223 7.282332 ACTGATTTTCCTTCTTCCAGAAAAG 57.718 36.000 0.00 0.00 41.37 2.27
3368 4224 6.266330 ACTGATTTTCCTTCTTCCAGAAAAGG 59.734 38.462 11.82 11.82 41.37 3.11
3369 4225 6.136155 TGATTTTCCTTCTTCCAGAAAAGGT 58.864 36.000 15.09 3.50 41.37 3.50
3370 4226 6.265422 TGATTTTCCTTCTTCCAGAAAAGGTC 59.735 38.462 15.09 9.61 41.37 3.85
3371 4227 5.388599 TTTCCTTCTTCCAGAAAAGGTCT 57.611 39.130 15.09 0.00 40.40 3.85
3372 4228 5.388599 TTCCTTCTTCCAGAAAAGGTCTT 57.611 39.130 15.09 0.00 40.40 3.01
3373 4229 4.718961 TCCTTCTTCCAGAAAAGGTCTTG 58.281 43.478 15.09 0.00 40.40 3.02
3431 4287 3.006323 ACTTCTGCAACCTACAGAGTCTG 59.994 47.826 18.83 18.83 44.55 3.51
3441 4297 4.833380 ACCTACAGAGTCTGAACTTTGCTA 59.167 41.667 26.86 5.02 40.42 3.49
3443 4299 6.663953 ACCTACAGAGTCTGAACTTTGCTATA 59.336 38.462 26.86 3.61 40.42 1.31
3444 4300 7.178628 ACCTACAGAGTCTGAACTTTGCTATAA 59.821 37.037 26.86 0.00 40.42 0.98
3460 4352 7.979444 TTGCTATAAAAGTACTTCTGCAGTT 57.021 32.000 14.67 0.82 36.88 3.16
3567 6275 2.038557 GGCAACCCTGTCTAACTCTCAA 59.961 50.000 0.00 0.00 0.00 3.02
3634 6350 6.662616 ACTGACAGACGATTTTTCATTTCTG 58.337 36.000 10.08 0.00 37.17 3.02
3638 6354 7.040478 TGACAGACGATTTTTCATTTCTGGAAT 60.040 33.333 0.00 0.00 35.76 3.01
3820 6568 4.550076 ACTCATTTCTGTTCCTCAGGAG 57.450 45.455 0.00 0.00 43.76 3.69
3900 6680 4.748892 TCTGCACTTCTGTAGCTACATTC 58.251 43.478 26.22 7.41 35.36 2.67
4080 6965 8.915057 AGTAGTAGTAAAGTTATCGAGGCATA 57.085 34.615 0.00 0.00 0.00 3.14
4102 6992 1.797320 TACCTCCTTTGATACCCGGG 58.203 55.000 22.25 22.25 0.00 5.73
4163 7053 2.029110 GCTTTTGCTATGGGCTTTGTCA 60.029 45.455 0.00 0.00 43.35 3.58
4176 7066 2.473984 GCTTTGTCAATGCTGAAACTGC 59.526 45.455 14.51 0.00 31.88 4.40
4184 7074 6.183360 TGTCAATGCTGAAACTGCTAGAAAAA 60.183 34.615 0.00 0.00 31.88 1.94
4283 7178 5.836821 ACTTACTCGTCTGATATTCTGCA 57.163 39.130 0.00 0.00 0.00 4.41
4372 7267 0.750850 CCGTCATCGTATCCACCCTT 59.249 55.000 0.00 0.00 35.01 3.95
4414 7309 1.754803 CAGAACCATGGCATCAGCATT 59.245 47.619 13.04 0.00 44.61 3.56
4444 7339 6.211515 AGATCAACAAAGACTGAACAATTGC 58.788 36.000 5.05 0.00 0.00 3.56
4488 7385 3.189618 TGCAACATGATGGCAAACAAA 57.810 38.095 0.00 0.00 34.05 2.83
4603 7506 1.902508 GGACTCACCATGAAGACTGGA 59.097 52.381 0.00 0.00 37.22 3.86
4674 7585 5.009010 CACACTGCACTAAAAAGATTCACCT 59.991 40.000 0.00 0.00 0.00 4.00
4683 7594 8.817100 CACTAAAAAGATTCACCTTGGAAAAAC 58.183 33.333 0.00 0.00 0.00 2.43
4684 7595 8.536175 ACTAAAAAGATTCACCTTGGAAAAACA 58.464 29.630 0.00 0.00 0.00 2.83
4685 7596 9.377312 CTAAAAAGATTCACCTTGGAAAAACAA 57.623 29.630 0.00 0.00 0.00 2.83
4717 7628 5.905480 ACACGCTTCAAATTGGAAAATTC 57.095 34.783 0.00 0.00 0.00 2.17
4752 7665 5.879237 TCAAATTGGAATTAAGTAGCTGCG 58.121 37.500 0.00 0.00 0.00 5.18
4920 7833 0.889994 TGAACATTGTGGGCTCATGC 59.110 50.000 0.00 0.00 38.76 4.06
4978 7891 5.313712 TCTGGACTTGAAATAACCTCCAAC 58.686 41.667 0.00 0.00 0.00 3.77
5066 7982 5.841783 AGATAATAGAAGGACAAGTCTCCCC 59.158 44.000 0.00 0.00 0.00 4.81
5069 7985 1.152096 AAGGACAAGTCTCCCCGGT 60.152 57.895 0.00 0.00 0.00 5.28
5110 8026 5.062308 CACACAACTATAGGTCGAAAGCTTC 59.938 44.000 0.00 0.00 34.40 3.86
5116 8032 1.021390 AGGTCGAAAGCTTCATGGCG 61.021 55.000 0.00 0.00 37.29 5.69
5463 8403 9.750125 CTTATTTTTCTGTAAAGGAAGTTGCTT 57.250 29.630 3.44 3.44 0.00 3.91
5526 8472 7.764443 CAGGTTGGTATATCGATATTTAGGGTG 59.236 40.741 22.37 9.32 0.00 4.61
5607 8553 4.460948 TTACCGAAACCTCCATCAGTAC 57.539 45.455 0.00 0.00 0.00 2.73
5613 8559 4.562757 CGAAACCTCCATCAGTACAAGGAA 60.563 45.833 0.00 0.00 0.00 3.36
5647 8593 5.512942 TCCTGGGTTCTTGATATTGACAA 57.487 39.130 0.00 0.00 0.00 3.18
5724 8670 7.741554 AGAAACTCCTATTACTGGACAGAAT 57.258 36.000 6.29 4.65 0.00 2.40
5837 8783 2.684001 ACAAACTGAACTCCGTGTCA 57.316 45.000 0.00 0.00 0.00 3.58
5881 8830 4.270008 AGTGACCCCCGAGAATATTTTTG 58.730 43.478 0.00 0.00 0.00 2.44
5882 8831 3.380320 GTGACCCCCGAGAATATTTTTGG 59.620 47.826 5.42 5.42 0.00 3.28
5916 11379 9.950680 CACATTTTAGCATCCTTATTCGTATTT 57.049 29.630 0.00 0.00 0.00 1.40
5961 11424 2.472695 TGGATGCACCTCAGTGTTAC 57.527 50.000 0.00 0.00 46.35 2.50
5962 11425 1.977854 TGGATGCACCTCAGTGTTACT 59.022 47.619 0.00 0.00 46.35 2.24
5963 11426 3.169908 TGGATGCACCTCAGTGTTACTA 58.830 45.455 0.00 0.00 46.35 1.82
5964 11427 3.580895 TGGATGCACCTCAGTGTTACTAA 59.419 43.478 0.00 0.00 46.35 2.24
6026 11489 4.083590 GCTTTGTAAGAGCTCAGTTTCCTG 60.084 45.833 17.77 0.81 40.25 3.86
6032 11495 0.251077 AGCTCAGTTTCCTGCTTGGG 60.251 55.000 0.00 0.00 38.66 4.12
6037 11500 2.708861 TCAGTTTCCTGCTTGGGAGTTA 59.291 45.455 0.00 0.00 38.66 2.24
6115 11578 9.844790 TTGATAATGCTTGTCTGAAATTTAGTG 57.155 29.630 0.00 0.00 0.00 2.74
6122 11585 8.031864 TGCTTGTCTGAAATTTAGTGTTTTCAA 58.968 29.630 0.00 0.00 40.31 2.69
6215 11681 5.884792 AGCATTCCTCATTGACCTAAAGAAG 59.115 40.000 0.00 0.00 0.00 2.85
6295 11763 8.807667 ATCTCTAGTTCACATTTTGCAAAAAG 57.192 30.769 27.10 24.37 0.00 2.27
6554 12040 7.042725 CCATTTTGATCATCTGATTGCAATGTC 60.043 37.037 18.59 4.68 34.37 3.06
6576 12062 5.410439 GTCAAATTTGCATTGCCTTCTCATT 59.590 36.000 13.54 0.00 0.00 2.57
6584 12070 5.243507 TGCATTGCCTTCTCATTAGTGAAAA 59.756 36.000 6.12 0.00 33.05 2.29
6725 12212 4.955925 TCTCGCAAACTTTTGAACTTCA 57.044 36.364 5.87 0.00 40.55 3.02
6886 12376 6.317140 ACTTGATATGCAGTATGACACCAAAG 59.683 38.462 0.00 0.00 39.69 2.77
6910 12406 9.720769 AAGTAATAATAGTAACTGCAACACTGT 57.279 29.630 5.09 0.00 0.00 3.55
6942 12441 9.206870 GTAAGCAAAATCATCTTGGAATTTCAA 57.793 29.630 0.00 0.00 0.00 2.69
6950 12449 7.837202 TCATCTTGGAATTTCAAATGAATGC 57.163 32.000 15.92 0.00 33.54 3.56
7026 12525 9.778741 TTCCCTTGTATGACTGATCATTTATAC 57.221 33.333 16.51 16.51 43.40 1.47
7027 12526 8.933653 TCCCTTGTATGACTGATCATTTATACA 58.066 33.333 20.11 20.11 43.40 2.29
7077 12576 7.509546 AGAACTGAGATTGACCTTTAAGTTCA 58.490 34.615 13.01 0.00 35.70 3.18
7352 12851 6.072175 GGATAACACCAAAGCTGTAAACATCA 60.072 38.462 0.00 0.00 0.00 3.07
7406 12905 7.736893 AGTATTCAGGATCAAGGTAACCATAC 58.263 38.462 0.00 0.00 37.17 2.39
7441 12940 5.675538 GGCTGTAAGTATTCCTGTCTCATT 58.324 41.667 0.00 0.00 35.30 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.416401 ACGAGGCCAGTCTCTTCAAAA 59.584 47.619 5.01 0.00 0.00 2.44
1 2 1.048601 ACGAGGCCAGTCTCTTCAAA 58.951 50.000 5.01 0.00 0.00 2.69
5 6 1.478510 CACATACGAGGCCAGTCTCTT 59.521 52.381 5.01 0.00 0.00 2.85
163 164 4.383649 CACATGTAGCTCAATTGTTGTTGC 59.616 41.667 5.13 4.06 0.00 4.17
168 169 6.208644 GTTTGTCACATGTAGCTCAATTGTT 58.791 36.000 5.13 0.00 0.00 2.83
202 203 6.418946 ACAAGACCTTAAAATGAGGGATCTC 58.581 40.000 0.00 0.00 38.65 2.75
244 245 6.610075 ATGTTATCCTTTTGTTGATTGGCT 57.390 33.333 0.00 0.00 0.00 4.75
298 300 1.006832 GTTTCCGCATGATGCTACGT 58.993 50.000 16.17 0.00 42.25 3.57
299 301 1.006086 TGTTTCCGCATGATGCTACG 58.994 50.000 16.17 2.86 42.25 3.51
301 303 1.065491 AGGTGTTTCCGCATGATGCTA 60.065 47.619 16.17 0.19 42.25 3.49
302 304 0.322816 AGGTGTTTCCGCATGATGCT 60.323 50.000 16.17 0.00 42.25 3.79
303 305 0.527565 AAGGTGTTTCCGCATGATGC 59.472 50.000 7.49 7.49 41.99 3.91
307 309 0.038343 CCCAAAGGTGTTTCCGCATG 60.038 55.000 0.00 0.00 41.99 4.06
308 310 1.815817 GCCCAAAGGTGTTTCCGCAT 61.816 55.000 0.00 0.00 41.99 4.73
309 311 2.494530 GCCCAAAGGTGTTTCCGCA 61.495 57.895 0.00 0.00 41.99 5.69
310 312 2.338620 GCCCAAAGGTGTTTCCGC 59.661 61.111 0.00 0.00 41.99 5.54
311 313 2.570284 GGGCCCAAAGGTGTTTCCG 61.570 63.158 19.95 0.00 41.99 4.30
312 314 2.570284 CGGGCCCAAAGGTGTTTCC 61.570 63.158 24.92 0.00 34.57 3.13
323 325 0.983905 TGGTCTATAAAGCGGGCCCA 60.984 55.000 24.92 0.53 0.00 5.36
354 356 0.462047 ACGCAATTAGCCGGAGAAGG 60.462 55.000 5.05 0.00 41.38 3.46
356 358 0.036765 ACACGCAATTAGCCGGAGAA 60.037 50.000 5.05 0.00 41.38 2.87
362 556 0.582005 GATCCGACACGCAATTAGCC 59.418 55.000 0.00 0.00 41.38 3.93
425 622 1.355971 TGAGTCGCGATACCAAAAGC 58.644 50.000 14.06 0.00 0.00 3.51
497 696 3.055458 TGTGCCACCCGACCATATATATG 60.055 47.826 14.78 14.78 0.00 1.78
504 703 1.558167 TACATGTGCCACCCGACCAT 61.558 55.000 9.11 0.00 0.00 3.55
505 704 1.769716 TTACATGTGCCACCCGACCA 61.770 55.000 9.11 0.00 0.00 4.02
507 706 1.459450 AATTACATGTGCCACCCGAC 58.541 50.000 9.11 0.00 0.00 4.79
508 707 2.208132 AAATTACATGTGCCACCCGA 57.792 45.000 9.11 0.00 0.00 5.14
509 708 2.230025 TGAAAATTACATGTGCCACCCG 59.770 45.455 9.11 0.00 0.00 5.28
511 710 5.132897 TCTTGAAAATTACATGTGCCACC 57.867 39.130 9.11 0.00 0.00 4.61
515 714 9.190858 TGTTATGTTCTTGAAAATTACATGTGC 57.809 29.630 9.11 0.00 33.56 4.57
813 1018 1.439644 GGAAGAGGCTGGTCGCTAG 59.560 63.158 0.00 0.00 39.13 3.42
874 1091 4.963318 ATATGTATATGATGAGGGGCGG 57.037 45.455 0.00 0.00 0.00 6.13
877 1094 6.549736 TGTCCGTATATGTATATGATGAGGGG 59.450 42.308 1.69 0.00 0.00 4.79
878 1095 7.426410 GTGTCCGTATATGTATATGATGAGGG 58.574 42.308 1.69 0.00 0.00 4.30
879 1096 7.132863 CGTGTCCGTATATGTATATGATGAGG 58.867 42.308 1.69 0.00 0.00 3.86
880 1097 6.633234 GCGTGTCCGTATATGTATATGATGAG 59.367 42.308 1.69 0.00 36.15 2.90
881 1098 6.492254 GCGTGTCCGTATATGTATATGATGA 58.508 40.000 1.69 0.00 36.15 2.92
882 1099 5.395486 CGCGTGTCCGTATATGTATATGATG 59.605 44.000 0.00 0.00 36.15 3.07
883 1100 5.505159 CCGCGTGTCCGTATATGTATATGAT 60.505 44.000 4.92 0.00 36.15 2.45
884 1101 4.201841 CCGCGTGTCCGTATATGTATATGA 60.202 45.833 4.92 0.00 36.15 2.15
885 1102 4.033019 CCGCGTGTCCGTATATGTATATG 58.967 47.826 4.92 0.00 36.15 1.78
886 1103 3.488047 GCCGCGTGTCCGTATATGTATAT 60.488 47.826 4.92 0.00 36.15 0.86
887 1104 2.159531 GCCGCGTGTCCGTATATGTATA 60.160 50.000 4.92 0.00 36.15 1.47
888 1105 1.401931 GCCGCGTGTCCGTATATGTAT 60.402 52.381 4.92 0.00 36.15 2.29
976 1198 0.179129 AATTATTGCGCTGTGGCTGC 60.179 50.000 9.73 0.00 38.04 5.25
996 1218 2.910360 CTCATCCCCACCATGCGA 59.090 61.111 0.00 0.00 0.00 5.10
1062 1284 1.513158 CCTGACTACCACTGCCTCG 59.487 63.158 0.00 0.00 0.00 4.63
1068 1290 3.391382 GGCGCCCTGACTACCACT 61.391 66.667 18.11 0.00 0.00 4.00
1117 1339 2.203082 CCGCCATCTCCATCTCCGA 61.203 63.158 0.00 0.00 0.00 4.55
1404 1635 3.130164 TGATTAGTGAGTGAGCAGAGAGC 59.870 47.826 0.00 0.00 46.19 4.09
1405 1636 4.398988 AGTGATTAGTGAGTGAGCAGAGAG 59.601 45.833 0.00 0.00 0.00 3.20
1410 1656 2.497675 GGGAGTGATTAGTGAGTGAGCA 59.502 50.000 0.00 0.00 0.00 4.26
1462 1723 3.925238 CGCTAATCGCCACGGCAC 61.925 66.667 9.11 0.00 42.06 5.01
1471 1732 2.344969 CGTACGGACGCGCTAATCG 61.345 63.158 7.51 5.78 43.21 3.34
1472 1733 3.507729 CGTACGGACGCGCTAATC 58.492 61.111 7.51 0.00 43.21 1.75
1493 1760 1.934849 GCCCAGCAATTTCGTTTGGAC 60.935 52.381 0.00 0.00 0.00 4.02
1500 1767 2.202518 CGCAGCCCAGCAATTTCG 60.203 61.111 0.00 0.00 0.00 3.46
1518 1785 8.217131 TGATCATGTACAAGATTCCAAATCAG 57.783 34.615 14.36 0.00 0.00 2.90
1521 1791 9.417561 AGATTGATCATGTACAAGATTCCAAAT 57.582 29.630 14.36 11.62 0.00 2.32
1526 1796 7.936950 TCGAGATTGATCATGTACAAGATTC 57.063 36.000 14.36 8.68 0.00 2.52
1528 1798 7.095910 GGATCGAGATTGATCATGTACAAGAT 58.904 38.462 13.18 13.18 45.31 2.40
1529 1799 6.450545 GGATCGAGATTGATCATGTACAAGA 58.549 40.000 2.84 2.84 45.31 3.02
1530 1800 5.344396 CGGATCGAGATTGATCATGTACAAG 59.656 44.000 0.00 0.00 45.31 3.16
1531 1801 5.222631 CGGATCGAGATTGATCATGTACAA 58.777 41.667 0.00 8.98 45.31 2.41
1532 1802 4.798574 CGGATCGAGATTGATCATGTACA 58.201 43.478 11.33 0.00 45.31 2.90
1533 1803 3.610242 GCGGATCGAGATTGATCATGTAC 59.390 47.826 11.33 0.00 45.31 2.90
1535 1805 2.298446 AGCGGATCGAGATTGATCATGT 59.702 45.455 11.33 0.00 45.31 3.21
1536 1806 2.956913 AGCGGATCGAGATTGATCATG 58.043 47.619 11.33 5.21 45.31 3.07
1537 1807 4.489810 GTTAGCGGATCGAGATTGATCAT 58.510 43.478 11.33 1.23 45.31 2.45
1538 1808 3.609409 CGTTAGCGGATCGAGATTGATCA 60.609 47.826 11.33 0.00 45.31 2.92
1539 1809 2.911723 CGTTAGCGGATCGAGATTGATC 59.088 50.000 1.93 1.93 43.26 2.92
1541 1811 1.944709 TCGTTAGCGGATCGAGATTGA 59.055 47.619 0.00 0.00 38.89 2.57
1543 1813 1.001597 GGTCGTTAGCGGATCGAGATT 60.002 52.381 0.00 0.00 38.89 2.40
1544 1814 0.592148 GGTCGTTAGCGGATCGAGAT 59.408 55.000 0.00 0.00 38.89 2.75
1547 1817 2.827051 CGGGTCGTTAGCGGATCGA 61.827 63.158 0.00 0.00 38.89 3.59
1548 1818 2.353145 CGGGTCGTTAGCGGATCG 60.353 66.667 0.00 0.00 38.89 3.69
1549 1819 1.588139 CACGGGTCGTTAGCGGATC 60.588 63.158 0.00 0.00 38.32 3.36
1550 1820 2.048023 TCACGGGTCGTTAGCGGAT 61.048 57.895 0.00 0.00 38.32 4.18
1552 1822 2.505557 GTCACGGGTCGTTAGCGG 60.506 66.667 0.00 0.00 38.32 5.52
1555 1825 0.032403 TGTTGGTCACGGGTCGTTAG 59.968 55.000 0.00 0.00 38.32 2.34
1560 1849 2.028385 AGTAGATTGTTGGTCACGGGTC 60.028 50.000 0.00 0.00 0.00 4.46
1574 1863 4.887071 TGCCAAGAACACAAACAGTAGATT 59.113 37.500 0.00 0.00 0.00 2.40
1575 1864 4.460263 TGCCAAGAACACAAACAGTAGAT 58.540 39.130 0.00 0.00 0.00 1.98
1579 1880 1.750778 CCTGCCAAGAACACAAACAGT 59.249 47.619 0.00 0.00 0.00 3.55
1613 1916 2.256461 GGCAGGTTCGCAAGCTTG 59.744 61.111 22.44 22.44 37.06 4.01
1657 1965 7.551262 ACGGTAGAAATGAAAAGCATGTATGTA 59.449 33.333 0.00 0.00 37.28 2.29
1703 2287 3.727726 TCTACACACAGAACCACACATG 58.272 45.455 0.00 0.00 0.00 3.21
1706 2290 3.428870 CGAATCTACACACAGAACCACAC 59.571 47.826 0.00 0.00 0.00 3.82
1707 2291 3.319689 TCGAATCTACACACAGAACCACA 59.680 43.478 0.00 0.00 0.00 4.17
1711 2295 3.839293 AGCTCGAATCTACACACAGAAC 58.161 45.455 0.00 0.00 0.00 3.01
1721 2348 3.642901 GGCACGAAGCTCGAATCTA 57.357 52.632 11.64 0.00 43.74 1.98
1972 2617 0.451383 CACACACCCACACACACTTG 59.549 55.000 0.00 0.00 0.00 3.16
1980 2628 2.123982 TGCATGCACACACCCACA 60.124 55.556 18.46 0.00 0.00 4.17
2011 2659 5.407502 CCGCATCCATTATTATCGTGTCTA 58.592 41.667 0.00 0.00 0.00 2.59
2013 2661 3.181520 GCCGCATCCATTATTATCGTGTC 60.182 47.826 0.00 0.00 0.00 3.67
2032 2680 3.682292 GAACCCCAGCCTACAGCCG 62.682 68.421 0.00 0.00 45.47 5.52
2059 2728 1.503818 GCGTCGCCTTGGACAGAAAA 61.504 55.000 5.75 0.00 36.73 2.29
2062 2731 3.303135 AGCGTCGCCTTGGACAGA 61.303 61.111 14.86 0.00 36.73 3.41
2218 2887 3.061848 GGGTAACGGACGGACGGA 61.062 66.667 6.00 0.00 38.39 4.69
2221 2890 1.142531 GGATGGGTAACGGACGGAC 59.857 63.158 0.00 0.00 37.60 4.79
2228 2897 3.560278 GCACGCGGATGGGTAACG 61.560 66.667 12.47 0.00 39.58 3.18
2229 2898 1.817941 ATGCACGCGGATGGGTAAC 60.818 57.895 12.47 0.00 39.58 2.50
2230 2899 1.817520 CATGCACGCGGATGGGTAA 60.818 57.895 12.47 0.00 39.58 2.85
2244 2914 0.446222 AATGAACCGTACGTGCATGC 59.554 50.000 11.82 11.82 40.16 4.06
2259 2961 3.278574 CGAAACCATTAGCCAGGAATGA 58.721 45.455 2.91 0.00 36.57 2.57
2263 2965 2.817258 CAAACGAAACCATTAGCCAGGA 59.183 45.455 0.00 0.00 0.00 3.86
2265 2967 3.004315 ACACAAACGAAACCATTAGCCAG 59.996 43.478 0.00 0.00 0.00 4.85
2280 2992 1.128878 TGCACGTACACACACACAAAC 59.871 47.619 0.00 0.00 0.00 2.93
2287 2999 0.528901 GACCACTGCACGTACACACA 60.529 55.000 0.00 0.00 0.00 3.72
2288 3000 1.545614 CGACCACTGCACGTACACAC 61.546 60.000 0.00 0.00 0.00 3.82
2289 3001 1.299544 CGACCACTGCACGTACACA 60.300 57.895 0.00 0.00 0.00 3.72
2290 3002 1.299620 ACGACCACTGCACGTACAC 60.300 57.895 0.00 0.00 38.47 2.90
2291 3003 1.299544 CACGACCACTGCACGTACA 60.300 57.895 0.00 0.00 38.47 2.90
2292 3004 2.019951 CCACGACCACTGCACGTAC 61.020 63.158 0.00 0.00 38.47 3.67
2371 3083 2.360350 CCACAGTGGCGGAATGCT 60.360 61.111 6.67 0.00 45.43 3.79
2373 3085 2.981560 GCACCACAGTGGCGGAATG 61.982 63.158 20.48 10.99 42.67 2.67
2535 3320 2.377310 TTTTCGCGCGTAGGACAGC 61.377 57.895 30.98 0.00 0.00 4.40
2644 3446 4.755411 AGCTGCACATACAACGTATACTT 58.245 39.130 1.02 0.00 0.00 2.24
2706 3508 2.530701 CCGTGGGAGGCTATCTATTCT 58.469 52.381 0.00 0.00 0.00 2.40
2776 3578 7.011763 CGACTACTACTAAGGCTACATACAACA 59.988 40.741 0.00 0.00 0.00 3.33
2790 3593 5.295045 TCGCATCATCAACGACTACTACTAA 59.705 40.000 0.00 0.00 0.00 2.24
2795 3598 2.683362 TCTCGCATCATCAACGACTACT 59.317 45.455 0.00 0.00 0.00 2.57
2821 3624 0.462581 CCCATGGACGGTGTGAGATG 60.463 60.000 15.22 0.00 0.00 2.90
2847 3650 3.682858 ACGTATTGTGCACATCTACCAAC 59.317 43.478 22.39 9.94 0.00 3.77
2849 3652 3.603158 ACGTATTGTGCACATCTACCA 57.397 42.857 22.39 4.46 0.00 3.25
2860 3663 5.685511 CCAACCTGAAGAAAAACGTATTGTG 59.314 40.000 0.00 0.00 0.00 3.33
2867 3670 3.488553 GGTCACCAACCTGAAGAAAAACG 60.489 47.826 0.00 0.00 45.45 3.60
2927 3733 4.571984 GTGGGTAAAGTAAAACACTGTCGT 59.428 41.667 0.00 0.00 37.63 4.34
2984 3823 2.564504 GACCCGTACTACCAACCTTTCT 59.435 50.000 0.00 0.00 0.00 2.52
2985 3824 2.672195 CGACCCGTACTACCAACCTTTC 60.672 54.545 0.00 0.00 0.00 2.62
2993 3832 1.716172 GACGTCGACCCGTACTACC 59.284 63.158 10.58 0.00 41.98 3.18
3030 3869 2.657237 CCGCTCACTTTCTCCCGT 59.343 61.111 0.00 0.00 0.00 5.28
3118 3961 4.027755 CGTTGCAGTGAACGTCCT 57.972 55.556 15.34 0.00 42.99 3.85
3159 4002 1.205893 GAAGGTCACACTAGCTGGGAG 59.794 57.143 0.85 0.00 30.65 4.30
3240 4091 2.376518 AGACCTTGATTTCTGGAAGCCA 59.623 45.455 0.00 0.00 0.00 4.75
3242 4093 3.441922 GGAAGACCTTGATTTCTGGAAGC 59.558 47.826 0.00 0.00 0.00 3.86
3244 4095 8.438661 CCAGAGGAAGACCTTGATTTCTGGAA 62.439 46.154 10.83 0.00 45.79 3.53
3245 4096 7.040049 CCAGAGGAAGACCTTGATTTCTGGA 62.040 48.000 10.83 0.00 45.79 3.86
3257 4108 0.398318 AGTTGCACCAGAGGAAGACC 59.602 55.000 0.00 0.00 0.00 3.85
3258 4109 2.613223 GGTAGTTGCACCAGAGGAAGAC 60.613 54.545 0.00 0.00 38.55 3.01
3259 4110 1.623811 GGTAGTTGCACCAGAGGAAGA 59.376 52.381 0.00 0.00 38.55 2.87
3260 4111 1.347707 TGGTAGTTGCACCAGAGGAAG 59.652 52.381 0.00 0.00 43.76 3.46
3261 4112 1.429930 TGGTAGTTGCACCAGAGGAA 58.570 50.000 0.00 0.00 43.76 3.36
3262 4113 3.157518 TGGTAGTTGCACCAGAGGA 57.842 52.632 0.00 0.00 43.76 3.71
3297 4148 6.951198 ACTATTCCTCTGCTAGCATACATACT 59.049 38.462 19.72 3.57 0.00 2.12
3298 4149 7.032580 CACTATTCCTCTGCTAGCATACATAC 58.967 42.308 19.72 0.00 0.00 2.39
3302 4153 5.461032 ACACTATTCCTCTGCTAGCATAC 57.539 43.478 19.72 0.00 0.00 2.39
3304 4155 4.163078 ACAACACTATTCCTCTGCTAGCAT 59.837 41.667 19.72 4.49 0.00 3.79
3305 4156 3.515502 ACAACACTATTCCTCTGCTAGCA 59.484 43.478 18.22 18.22 0.00 3.49
3306 4157 3.868077 CACAACACTATTCCTCTGCTAGC 59.132 47.826 8.10 8.10 0.00 3.42
3307 4158 3.868077 GCACAACACTATTCCTCTGCTAG 59.132 47.826 0.00 0.00 0.00 3.42
3308 4159 3.369471 GGCACAACACTATTCCTCTGCTA 60.369 47.826 0.00 0.00 0.00 3.49
3309 4160 2.616510 GGCACAACACTATTCCTCTGCT 60.617 50.000 0.00 0.00 0.00 4.24
3310 4161 1.740025 GGCACAACACTATTCCTCTGC 59.260 52.381 0.00 0.00 0.00 4.26
3311 4162 3.055530 AGAGGCACAACACTATTCCTCTG 60.056 47.826 7.71 0.00 46.09 3.35
3353 4209 7.680588 CTTTGTCAAGACCTTTTCTGGAAGAAG 60.681 40.741 0.00 0.00 42.79 2.85
3354 4210 6.095440 CTTTGTCAAGACCTTTTCTGGAAGAA 59.905 38.462 0.00 0.00 41.21 2.52
3355 4211 4.771114 TGTCAAGACCTTTTCTGGAAGA 57.229 40.909 0.00 0.00 44.68 2.87
3356 4212 5.358160 ACTTTGTCAAGACCTTTTCTGGAAG 59.642 40.000 0.00 0.00 35.90 3.46
3357 4213 5.261216 ACTTTGTCAAGACCTTTTCTGGAA 58.739 37.500 0.00 0.00 35.90 3.53
3358 4214 4.855340 ACTTTGTCAAGACCTTTTCTGGA 58.145 39.130 0.00 0.00 33.46 3.86
3359 4215 6.693315 TTACTTTGTCAAGACCTTTTCTGG 57.307 37.500 0.00 0.00 33.46 3.86
3360 4216 9.586435 AATTTTACTTTGTCAAGACCTTTTCTG 57.414 29.630 0.00 0.00 33.46 3.02
3370 4226 9.810545 TGGGTTTCTTAATTTTACTTTGTCAAG 57.189 29.630 0.00 0.00 35.92 3.02
3371 4227 9.589111 GTGGGTTTCTTAATTTTACTTTGTCAA 57.411 29.630 0.00 0.00 0.00 3.18
3372 4228 8.750298 TGTGGGTTTCTTAATTTTACTTTGTCA 58.250 29.630 0.00 0.00 0.00 3.58
3373 4229 9.027129 GTGTGGGTTTCTTAATTTTACTTTGTC 57.973 33.333 0.00 0.00 0.00 3.18
3431 4287 8.504005 TGCAGAAGTACTTTTATAGCAAAGTTC 58.496 33.333 10.02 3.97 43.17 3.01
3441 4297 7.801716 TGTGAAACTGCAGAAGTACTTTTAT 57.198 32.000 23.35 0.00 38.56 1.40
3443 4299 6.699575 ATGTGAAACTGCAGAAGTACTTTT 57.300 33.333 23.35 8.41 38.56 2.27
3444 4300 6.699575 AATGTGAAACTGCAGAAGTACTTT 57.300 33.333 23.35 9.22 38.56 2.66
3460 4352 3.554934 AGGTCAGTGCTGAAAATGTGAA 58.445 40.909 3.19 0.00 41.85 3.18
3567 6275 8.031277 CCTAAGCAAAAGCAGTTAAGAATGAAT 58.969 33.333 0.00 0.00 0.00 2.57
3634 6350 7.994194 AGAATGCAGACTTGATTTTAGATTCC 58.006 34.615 0.00 0.00 0.00 3.01
3774 6522 2.693069 CCTTGAGAGGCACAACACTAG 58.307 52.381 0.00 0.00 35.94 2.57
3865 6640 3.475566 AGTGCAGAGCAAAGTTCAGTA 57.524 42.857 0.00 0.00 41.47 2.74
3900 6680 3.399440 AAGAGGTCAGTGCTGAAAGAG 57.601 47.619 3.19 0.00 41.85 2.85
4080 6965 2.770232 CCGGGTATCAAAGGAGGTAAGT 59.230 50.000 0.00 0.00 0.00 2.24
4088 6978 1.152963 CAGCCCCGGGTATCAAAGG 60.153 63.158 21.85 1.58 0.00 3.11
4159 7049 4.006780 TCTAGCAGTTTCAGCATTGACA 57.993 40.909 0.00 0.00 31.71 3.58
4283 7178 1.362768 CTCTGCATACACACACGCAT 58.637 50.000 0.00 0.00 33.15 4.73
4372 7267 2.102420 TGCTTTGAACAGGAAGACGAGA 59.898 45.455 0.00 0.00 0.00 4.04
4414 7309 7.272244 TGTTCAGTCTTTGTTGATCTCTTACA 58.728 34.615 0.00 0.00 0.00 2.41
4488 7385 8.196771 TCTGCGGCAAAAAGATTCATATATTTT 58.803 29.630 3.44 0.00 36.90 1.82
4685 7596 6.475402 CCAATTTGAAGCGTGTTAGAGTTTTT 59.525 34.615 0.00 0.00 0.00 1.94
4752 7665 5.067674 TGGCACTGGCTATGAAAAATACATC 59.932 40.000 3.97 0.00 40.87 3.06
4978 7891 4.774124 TCTACAAGGAATGCAAGAGGATG 58.226 43.478 0.00 0.00 0.00 3.51
5060 7976 0.982852 ATGATGCAGAACCGGGGAGA 60.983 55.000 6.32 0.00 0.00 3.71
5110 8026 4.811024 TGTTAGAAATAAGAGAGCGCCATG 59.189 41.667 2.29 0.00 0.00 3.66
5116 8032 5.665459 TGCTCCTGTTAGAAATAAGAGAGC 58.335 41.667 0.00 0.00 31.21 4.09
5451 8391 6.410942 AGCAATTAAAGAAGCAACTTCCTT 57.589 33.333 3.77 0.57 40.98 3.36
5499 8445 7.676893 ACCCTAAATATCGATATACCAACCTGA 59.323 37.037 18.04 0.00 0.00 3.86
5526 8472 2.288948 TGGCCTTGTGATTTGCATCAAC 60.289 45.455 3.32 0.00 41.30 3.18
5607 8553 3.501445 CAGGAACTCTTTGAGCTTCCTTG 59.499 47.826 19.15 14.21 42.06 3.61
5613 8559 1.439543 ACCCAGGAACTCTTTGAGCT 58.560 50.000 0.00 0.00 34.60 4.09
5647 8593 3.106827 CAAAGTTTATGGGGGCCTCAAT 58.893 45.455 11.82 0.00 0.00 2.57
5724 8670 2.360844 TCCGCAGTTTGACTTCAACAA 58.639 42.857 0.00 0.00 35.28 2.83
5837 8783 9.607333 TCACTAACCTGATAGATCCAAGATTAT 57.393 33.333 0.00 0.00 0.00 1.28
5881 8830 3.552604 TGCTAAAATGTGAAGCGAACC 57.447 42.857 0.00 0.00 39.14 3.62
5882 8831 4.098416 GGATGCTAAAATGTGAAGCGAAC 58.902 43.478 0.00 0.00 39.14 3.95
5961 11424 7.385205 TGCTTTCAGCTACTTGTAGAAAGTTAG 59.615 37.037 17.01 3.08 44.18 2.34
5962 11425 7.214381 TGCTTTCAGCTACTTGTAGAAAGTTA 58.786 34.615 17.01 8.09 44.18 2.24
5963 11426 6.055588 TGCTTTCAGCTACTTGTAGAAAGTT 58.944 36.000 17.01 0.00 44.18 2.66
5964 11427 5.611374 TGCTTTCAGCTACTTGTAGAAAGT 58.389 37.500 17.01 0.00 44.18 2.66
6026 11489 4.820894 TCCTTAGTTCTAACTCCCAAGC 57.179 45.455 0.00 0.00 40.37 4.01
6032 11495 9.791820 GATCTAACACTTCCTTAGTTCTAACTC 57.208 37.037 0.00 0.00 40.37 3.01
6037 11500 6.351456 GCCTGATCTAACACTTCCTTAGTTCT 60.351 42.308 0.00 0.00 33.85 3.01
6094 11557 8.947055 AAAACACTAAATTTCAGACAAGCATT 57.053 26.923 0.00 0.00 0.00 3.56
6115 11578 6.984740 TGCGTCAGTGAAAATATTGAAAAC 57.015 33.333 0.00 0.00 0.00 2.43
6122 11585 7.734924 ATGTATGATGCGTCAGTGAAAATAT 57.265 32.000 15.04 0.00 37.87 1.28
6215 11681 5.918608 TCTAGGCCATGTTTCTCTATTGAC 58.081 41.667 5.01 0.00 0.00 3.18
6220 11686 3.995636 ACCTCTAGGCCATGTTTCTCTA 58.004 45.455 5.01 0.00 39.32 2.43
6326 11805 6.038714 GGAGAGAAAAAGGTATTGCCACATAG 59.961 42.308 0.00 0.00 40.61 2.23
6419 11905 0.179129 CCGGCCTGAAATGATTGTGC 60.179 55.000 0.00 0.00 0.00 4.57
6554 12040 5.873179 AATGAGAAGGCAATGCAAATTTG 57.127 34.783 14.03 14.03 0.00 2.32
6576 12062 4.619973 CTTTGTTGCAGGCATTTTCACTA 58.380 39.130 0.00 0.00 0.00 2.74
6584 12070 2.224329 TGAAATGCTTTGTTGCAGGCAT 60.224 40.909 0.00 0.00 46.71 4.40
6909 12405 6.974622 CCAAGATGATTTTGCTTACATGGTAC 59.025 38.462 0.00 0.00 0.00 3.34
6910 12406 6.889177 TCCAAGATGATTTTGCTTACATGGTA 59.111 34.615 0.00 0.00 0.00 3.25
6942 12441 6.761312 TGGAAAAAGAGTTCATGCATTCATT 58.239 32.000 0.00 0.00 0.00 2.57
6950 12449 5.192327 ACAGCTTGGAAAAAGAGTTCATG 57.808 39.130 0.00 0.00 0.00 3.07
7026 12525 5.704515 AGATCACAAGACTGAACCAGAATTG 59.295 40.000 0.45 7.44 36.92 2.32
7027 12526 5.704515 CAGATCACAAGACTGAACCAGAATT 59.295 40.000 0.45 0.00 35.18 2.17
7039 12538 5.384063 TCTCAGTTCTCAGATCACAAGAC 57.616 43.478 0.00 0.00 0.00 3.01
7077 12576 3.812053 GAGACAACACTTGAAGATGTGCT 59.188 43.478 0.00 1.77 37.68 4.40
7249 12748 4.508861 GCACAAGTCTTGCATCACATTTTT 59.491 37.500 12.66 0.00 39.93 1.94
7265 12764 3.466836 TCATTCGTCAGAAAGCACAAGT 58.533 40.909 0.00 0.00 40.15 3.16
7303 12802 1.686355 AGAGCTACTGACGAGGATGG 58.314 55.000 0.00 0.00 0.00 3.51
7352 12851 1.158434 GTCGACTCACGGAGAAGAGT 58.842 55.000 8.70 0.00 45.35 3.24
7406 12905 0.320073 TTACAGCCGTCCAAGGAACG 60.320 55.000 0.00 0.00 0.00 3.95
7441 12940 5.336690 GGAGCTTCAAGGTCAATTGCAATAA 60.337 40.000 18.19 0.95 44.10 1.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.