Multiple sequence alignment - TraesCS2B01G535600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G535600 chr2B 100.000 2858 0 0 1 2858 731483489 731480632 0.000000e+00 5278.0
1 TraesCS2B01G535600 chr2B 81.527 1375 233 17 1082 2452 731536632 731535275 0.000000e+00 1112.0
2 TraesCS2B01G535600 chr2B 83.192 708 78 20 3 691 338693923 338694608 8.210000e-171 610.0
3 TraesCS2B01G535600 chr2B 82.615 696 115 5 1758 2452 731526317 731525627 8.210000e-171 610.0
4 TraesCS2B01G535600 chr2B 100.000 268 0 0 3191 3458 731480299 731480032 2.400000e-136 496.0
5 TraesCS2B01G535600 chr2D 94.638 1007 53 1 1496 2501 601255005 601253999 0.000000e+00 1559.0
6 TraesCS2B01G535600 chr2D 94.604 834 38 5 684 1511 601255896 601255064 0.000000e+00 1284.0
7 TraesCS2B01G535600 chr2D 82.735 1448 231 15 1044 2483 601263974 601262538 0.000000e+00 1271.0
8 TraesCS2B01G535600 chr2D 86.940 268 34 1 2569 2836 601262533 601262267 2.020000e-77 300.0
9 TraesCS2B01G535600 chr2A 82.081 1797 273 26 1044 2836 734654266 734652515 0.000000e+00 1489.0
10 TraesCS2B01G535600 chr7B 81.272 1431 250 13 1027 2448 3342492 3341071 0.000000e+00 1142.0
11 TraesCS2B01G535600 chr7B 80.092 1522 285 13 969 2478 3540082 3541597 0.000000e+00 1116.0
12 TraesCS2B01G535600 chr7B 87.637 639 62 13 55 684 108856832 108857462 0.000000e+00 726.0
13 TraesCS2B01G535600 chr7B 81.366 644 100 16 53 684 684755944 684755309 1.110000e-139 507.0
14 TraesCS2B01G535600 chr7B 99.149 235 2 0 3224 3458 718425393 718425627 1.150000e-114 424.0
15 TraesCS2B01G535600 chr7B 94.828 58 2 1 53 110 509365687 509365631 4.750000e-14 89.8
16 TraesCS2B01G535600 chr7D 80.013 1526 288 14 955 2469 60705596 60704077 0.000000e+00 1112.0
17 TraesCS2B01G535600 chr7D 81.633 1323 239 4 1139 2459 61228754 61227434 0.000000e+00 1094.0
18 TraesCS2B01G535600 chr7A 81.509 1325 237 6 1139 2459 65154666 65153346 0.000000e+00 1083.0
19 TraesCS2B01G535600 chr7A 83.732 627 91 8 63 682 11256602 11255980 1.790000e-162 582.0
20 TraesCS2B01G535600 chr7A 85.714 539 63 12 152 684 5174790 5174260 1.080000e-154 556.0
21 TraesCS2B01G535600 chr7A 82.808 634 95 12 63 688 5173758 5173131 3.900000e-154 555.0
22 TraesCS2B01G535600 chr5D 85.670 649 71 16 48 684 209651034 209651672 0.000000e+00 664.0
23 TraesCS2B01G535600 chr4A 86.240 625 62 12 87 689 693603125 693603747 0.000000e+00 656.0
24 TraesCS2B01G535600 chr4A 95.745 235 10 0 3224 3458 117095563 117095797 2.520000e-101 379.0
25 TraesCS2B01G535600 chr1A 85.266 638 75 14 55 684 33895805 33895179 1.050000e-179 640.0
26 TraesCS2B01G535600 chr3D 84.977 639 77 14 56 684 316804461 316803832 6.300000e-177 630.0
27 TraesCS2B01G535600 chr1B 82.399 642 95 13 54 684 457716 457082 8.440000e-151 544.0
28 TraesCS2B01G535600 chr5A 94.515 237 12 1 3222 3458 461060055 461060290 7.050000e-97 364.0
29 TraesCS2B01G535600 chr3B 82.960 223 14 4 3236 3458 818204441 818204243 2.740000e-41 180.0
30 TraesCS2B01G535600 chr3B 82.511 223 15 4 3236 3458 818239979 818239781 1.280000e-39 174.0
31 TraesCS2B01G535600 chr5B 94.444 54 3 0 3 56 523189659 523189712 2.210000e-12 84.2
32 TraesCS2B01G535600 chr6D 92.727 55 4 0 1 55 429846682 429846628 2.860000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G535600 chr2B 731480032 731483489 3457 True 2887.0 5278 100.0000 1 3458 2 chr2B.!!$R3 3457
1 TraesCS2B01G535600 chr2B 731535275 731536632 1357 True 1112.0 1112 81.5270 1082 2452 1 chr2B.!!$R2 1370
2 TraesCS2B01G535600 chr2B 338693923 338694608 685 False 610.0 610 83.1920 3 691 1 chr2B.!!$F1 688
3 TraesCS2B01G535600 chr2B 731525627 731526317 690 True 610.0 610 82.6150 1758 2452 1 chr2B.!!$R1 694
4 TraesCS2B01G535600 chr2D 601253999 601255896 1897 True 1421.5 1559 94.6210 684 2501 2 chr2D.!!$R1 1817
5 TraesCS2B01G535600 chr2D 601262267 601263974 1707 True 785.5 1271 84.8375 1044 2836 2 chr2D.!!$R2 1792
6 TraesCS2B01G535600 chr2A 734652515 734654266 1751 True 1489.0 1489 82.0810 1044 2836 1 chr2A.!!$R1 1792
7 TraesCS2B01G535600 chr7B 3341071 3342492 1421 True 1142.0 1142 81.2720 1027 2448 1 chr7B.!!$R1 1421
8 TraesCS2B01G535600 chr7B 3540082 3541597 1515 False 1116.0 1116 80.0920 969 2478 1 chr7B.!!$F1 1509
9 TraesCS2B01G535600 chr7B 108856832 108857462 630 False 726.0 726 87.6370 55 684 1 chr7B.!!$F2 629
10 TraesCS2B01G535600 chr7B 684755309 684755944 635 True 507.0 507 81.3660 53 684 1 chr7B.!!$R3 631
11 TraesCS2B01G535600 chr7D 60704077 60705596 1519 True 1112.0 1112 80.0130 955 2469 1 chr7D.!!$R1 1514
12 TraesCS2B01G535600 chr7D 61227434 61228754 1320 True 1094.0 1094 81.6330 1139 2459 1 chr7D.!!$R2 1320
13 TraesCS2B01G535600 chr7A 65153346 65154666 1320 True 1083.0 1083 81.5090 1139 2459 1 chr7A.!!$R2 1320
14 TraesCS2B01G535600 chr7A 11255980 11256602 622 True 582.0 582 83.7320 63 682 1 chr7A.!!$R1 619
15 TraesCS2B01G535600 chr7A 5173131 5174790 1659 True 555.5 556 84.2610 63 688 2 chr7A.!!$R3 625
16 TraesCS2B01G535600 chr5D 209651034 209651672 638 False 664.0 664 85.6700 48 684 1 chr5D.!!$F1 636
17 TraesCS2B01G535600 chr4A 693603125 693603747 622 False 656.0 656 86.2400 87 689 1 chr4A.!!$F2 602
18 TraesCS2B01G535600 chr1A 33895179 33895805 626 True 640.0 640 85.2660 55 684 1 chr1A.!!$R1 629
19 TraesCS2B01G535600 chr3D 316803832 316804461 629 True 630.0 630 84.9770 56 684 1 chr3D.!!$R1 628
20 TraesCS2B01G535600 chr1B 457082 457716 634 True 544.0 544 82.3990 54 684 1 chr1B.!!$R1 630

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
489 1660 0.030773 TCTCTGGCATACGATGACGC 59.969 55.0 0.0 0.0 42.8 5.19 F
610 1781 0.457681 GCACACACGGTTTTGCTTGT 60.458 50.0 0.0 0.0 32.0 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1566 2831 0.973632 TGTCAGCGTTGGATGGTACT 59.026 50.0 0.0 0.0 0.0 2.73 R
2518 3792 0.469144 GTAGGAGCAGGAGGAGGAGG 60.469 65.0 0.0 0.0 0.0 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
119 137 8.506140 TTTCGAAAAATGCTCTGTATTCAAAG 57.494 30.769 8.44 0.00 0.00 2.77
331 356 8.893563 AAGATGTTCCCTTCCATATTTTGTTA 57.106 30.769 0.00 0.00 0.00 2.41
415 1572 8.690203 TCATGTTTCCTAGAATGTTCAGAAAA 57.310 30.769 0.00 0.00 30.36 2.29
441 1607 3.820195 ACCTTAAAACCCCCTCGATTT 57.180 42.857 0.00 0.00 0.00 2.17
489 1660 0.030773 TCTCTGGCATACGATGACGC 59.969 55.000 0.00 0.00 42.80 5.19
598 1769 3.435105 TCCTTTTTCATGTGCACACAC 57.565 42.857 24.37 0.00 45.05 3.82
610 1781 0.457681 GCACACACGGTTTTGCTTGT 60.458 50.000 0.00 0.00 32.00 3.16
717 1889 1.094785 GTGTTCCTGTTGTGCAGTGT 58.905 50.000 0.00 0.00 43.55 3.55
738 1910 4.707448 TGTGAAAAACATGGGTTACACACT 59.293 37.500 11.23 0.00 38.94 3.55
740 1912 6.038825 TGTGAAAAACATGGGTTACACACTAG 59.961 38.462 11.23 0.00 38.94 2.57
763 1935 4.620609 GTGTGCGACATGAAAAATATGCAA 59.379 37.500 0.00 0.00 32.29 4.08
767 1939 6.021468 GTGCGACATGAAAAATATGCAAGTAC 60.021 38.462 0.00 0.00 32.29 2.73
779 1951 9.515020 AAAATATGCAAGTACGAAATATGGTTG 57.485 29.630 0.00 0.00 0.00 3.77
782 1954 5.483811 TGCAAGTACGAAATATGGTTGAGA 58.516 37.500 0.00 0.00 0.00 3.27
797 1969 3.375699 GTTGAGAAGTAGGGATGGAGGA 58.624 50.000 0.00 0.00 0.00 3.71
804 1976 5.317262 AGAAGTAGGGATGGAGGATCTCATA 59.683 44.000 0.00 0.00 33.33 2.15
846 2018 9.912634 CAAGGACTGCTAGAAATTTATTTGAAA 57.087 29.630 0.00 0.00 0.00 2.69
962 2139 1.207089 CCTTGGTTGCTATCCTCGTCA 59.793 52.381 0.00 0.00 0.00 4.35
1015 2199 5.106396 CCCAACAACATGAGTTCTCATCTTC 60.106 44.000 11.75 0.00 35.28 2.87
1070 2254 0.749454 ACCCTCATCCTGCGAATTGC 60.749 55.000 0.00 0.00 46.70 3.56
1089 2273 1.442769 CCATTGCAACTACACTCGCT 58.557 50.000 0.00 0.00 0.00 4.93
1418 2609 8.088981 CCAGACATATGTACCACCTATACTTTC 58.911 40.741 8.71 0.00 0.00 2.62
1482 2673 1.667724 GCAGAGTTGATCATGTTCCCG 59.332 52.381 0.00 0.00 0.00 5.14
1545 2810 2.165641 TGCGATCCGTGTTCTTATCACT 59.834 45.455 0.00 0.00 34.14 3.41
1549 2814 5.337554 CGATCCGTGTTCTTATCACTAACA 58.662 41.667 0.00 0.00 34.14 2.41
1557 2822 4.471904 TCTTATCACTAACAGCAGTGGG 57.528 45.455 3.61 0.00 44.98 4.61
1612 2878 4.123506 TGTGAACAGATACAAGTTGCGAA 58.876 39.130 1.81 0.00 0.00 4.70
1674 2940 2.523168 TCAGTGACTGCGGTGGGA 60.523 61.111 7.93 0.00 0.00 4.37
1701 2967 1.097232 GCAACATGCTGCAGGTCATA 58.903 50.000 20.90 0.00 42.17 2.15
1746 3012 4.523173 GTGGTATCTACGGAGATCATTGGA 59.477 45.833 15.03 0.00 41.75 3.53
1810 3076 6.259167 GTCTAACATATTGTTTCGTATGGGCA 59.741 38.462 0.00 0.00 41.45 5.36
1995 3261 0.321346 TCGCTGGAGATGCACTGAAA 59.679 50.000 0.00 0.00 0.00 2.69
2105 3371 0.537188 TCAAGGAGGGCGAGACAATC 59.463 55.000 0.00 0.00 0.00 2.67
2202 3468 7.134362 ACAACATGGACTCAATCTATCAGAT 57.866 36.000 0.00 0.00 36.28 2.90
2206 3472 8.718158 ACATGGACTCAATCTATCAGATAAGA 57.282 34.615 0.00 0.00 32.89 2.10
2208 3474 9.421806 CATGGACTCAATCTATCAGATAAGAAC 57.578 37.037 0.00 0.00 32.89 3.01
2461 3727 6.918022 GGATGTCTCCAACAAAGTTTAAACTG 59.082 38.462 21.22 13.03 42.37 3.16
2495 3769 7.943413 TGACATCGACATCTACTACTACTAC 57.057 40.000 0.00 0.00 0.00 2.73
2501 3775 5.984323 CGACATCTACTACTACTACTGCTGA 59.016 44.000 0.00 0.00 0.00 4.26
2502 3776 6.647481 CGACATCTACTACTACTACTGCTGAT 59.353 42.308 0.00 0.00 0.00 2.90
2503 3777 7.359681 CGACATCTACTACTACTACTGCTGATG 60.360 44.444 0.00 0.00 35.23 3.07
2504 3778 6.205853 ACATCTACTACTACTACTGCTGATGC 59.794 42.308 0.00 0.00 40.20 3.91
2505 3779 5.931294 TCTACTACTACTACTGCTGATGCT 58.069 41.667 0.00 0.00 40.48 3.79
2506 3780 5.992829 TCTACTACTACTACTGCTGATGCTC 59.007 44.000 0.00 0.00 40.48 4.26
2507 3781 3.886505 ACTACTACTACTGCTGATGCTCC 59.113 47.826 0.00 0.00 40.48 4.70
2508 3782 3.025322 ACTACTACTGCTGATGCTCCT 57.975 47.619 0.00 0.00 40.48 3.69
2509 3783 2.955660 ACTACTACTGCTGATGCTCCTC 59.044 50.000 0.00 0.00 40.48 3.71
2510 3784 1.118838 ACTACTGCTGATGCTCCTCC 58.881 55.000 0.00 0.00 40.48 4.30
2511 3785 1.342874 ACTACTGCTGATGCTCCTCCT 60.343 52.381 0.00 0.00 40.48 3.69
2512 3786 1.340889 CTACTGCTGATGCTCCTCCTC 59.659 57.143 0.00 0.00 40.48 3.71
2513 3787 1.336632 ACTGCTGATGCTCCTCCTCC 61.337 60.000 0.00 0.00 40.48 4.30
2514 3788 1.002662 TGCTGATGCTCCTCCTCCT 59.997 57.895 0.00 0.00 40.48 3.69
2515 3789 1.047596 TGCTGATGCTCCTCCTCCTC 61.048 60.000 0.00 0.00 40.48 3.71
2516 3790 1.757423 GCTGATGCTCCTCCTCCTCC 61.757 65.000 0.00 0.00 36.03 4.30
2517 3791 0.105555 CTGATGCTCCTCCTCCTCCT 60.106 60.000 0.00 0.00 0.00 3.69
2518 3792 0.105760 TGATGCTCCTCCTCCTCCTC 60.106 60.000 0.00 0.00 0.00 3.71
2519 3793 0.831711 GATGCTCCTCCTCCTCCTCC 60.832 65.000 0.00 0.00 0.00 4.30
2520 3794 1.303423 ATGCTCCTCCTCCTCCTCCT 61.303 60.000 0.00 0.00 0.00 3.69
2521 3795 1.152546 GCTCCTCCTCCTCCTCCTC 60.153 68.421 0.00 0.00 0.00 3.71
2522 3796 1.541672 CTCCTCCTCCTCCTCCTCC 59.458 68.421 0.00 0.00 0.00 4.30
2523 3797 0.998945 CTCCTCCTCCTCCTCCTCCT 60.999 65.000 0.00 0.00 0.00 3.69
2524 3798 0.996762 TCCTCCTCCTCCTCCTCCTC 60.997 65.000 0.00 0.00 0.00 3.71
2525 3799 1.541672 CTCCTCCTCCTCCTCCTCC 59.458 68.421 0.00 0.00 0.00 4.30
2526 3800 0.998945 CTCCTCCTCCTCCTCCTCCT 60.999 65.000 0.00 0.00 0.00 3.69
2527 3801 0.996762 TCCTCCTCCTCCTCCTCCTC 60.997 65.000 0.00 0.00 0.00 3.71
2528 3802 1.541672 CTCCTCCTCCTCCTCCTCC 59.458 68.421 0.00 0.00 0.00 4.30
2529 3803 0.998945 CTCCTCCTCCTCCTCCTCCT 60.999 65.000 0.00 0.00 0.00 3.69
2530 3804 1.232792 CCTCCTCCTCCTCCTCCTG 59.767 68.421 0.00 0.00 0.00 3.86
2531 3805 1.457455 CTCCTCCTCCTCCTCCTGC 60.457 68.421 0.00 0.00 0.00 4.85
2532 3806 1.938596 TCCTCCTCCTCCTCCTGCT 60.939 63.158 0.00 0.00 0.00 4.24
2533 3807 1.457455 CCTCCTCCTCCTCCTGCTC 60.457 68.421 0.00 0.00 0.00 4.26
2608 3882 3.839293 ACGTCAACATCTAGAAGAGCAC 58.161 45.455 1.17 0.00 0.00 4.40
2619 3893 8.522003 ACATCTAGAAGAGCACATAGTATGATG 58.478 37.037 17.13 11.63 33.54 3.07
2623 3897 6.934056 AGAAGAGCACATAGTATGATGATCC 58.066 40.000 17.13 7.73 31.66 3.36
2624 3898 5.321959 AGAGCACATAGTATGATGATCCG 57.678 43.478 17.13 0.00 31.66 4.18
2626 3900 5.065704 AGCACATAGTATGATGATCCGAC 57.934 43.478 17.13 0.00 0.00 4.79
2631 3905 7.254761 GCACATAGTATGATGATCCGACAAAAA 60.255 37.037 17.13 0.00 0.00 1.94
2636 3910 7.050377 AGTATGATGATCCGACAAAAAGACAT 58.950 34.615 0.00 0.00 0.00 3.06
2637 3911 5.550232 TGATGATCCGACAAAAAGACATG 57.450 39.130 0.00 0.00 0.00 3.21
2641 3915 5.063204 TGATCCGACAAAAAGACATGACTT 58.937 37.500 4.51 4.51 0.00 3.01
2645 3919 4.511454 CCGACAAAAAGACATGACTTCTCA 59.489 41.667 10.83 0.00 0.00 3.27
2650 3924 6.825721 ACAAAAAGACATGACTTCTCAACTCT 59.174 34.615 10.83 0.00 0.00 3.24
2663 3937 4.985538 TCTCAACTCTATTGCCCAAAAGT 58.014 39.130 0.00 0.00 0.00 2.66
2665 3939 4.079253 TCAACTCTATTGCCCAAAAGTCC 58.921 43.478 0.00 0.00 0.00 3.85
2669 3943 4.019174 CTCTATTGCCCAAAAGTCCATGT 58.981 43.478 0.00 0.00 0.00 3.21
2674 3948 3.838565 TGCCCAAAAGTCCATGTTCTTA 58.161 40.909 0.00 0.00 0.00 2.10
2686 3960 6.674419 AGTCCATGTTCTTATTTAGAGAGGGT 59.326 38.462 0.00 0.00 33.51 4.34
2740 4014 3.536158 TCCAAGCGAATGTTTTTCTCG 57.464 42.857 0.00 0.00 35.70 4.04
2767 4041 5.522460 GTCATTGTATCGGCTTTGCTAGTTA 59.478 40.000 0.00 0.00 0.00 2.24
2771 4045 7.473027 TTGTATCGGCTTTGCTAGTTATAAC 57.527 36.000 7.57 7.57 0.00 1.89
2772 4046 6.812998 TGTATCGGCTTTGCTAGTTATAACT 58.187 36.000 21.35 21.35 42.91 2.24
2774 4048 6.604735 ATCGGCTTTGCTAGTTATAACTTG 57.395 37.500 22.66 20.65 40.37 3.16
2792 4066 4.781934 ACTTGTAAGTTGCTTGAGGACTT 58.218 39.130 0.00 0.00 35.21 3.01
2811 4085 6.881602 AGGACTTCCTGTGTCTAATTTGATTC 59.118 38.462 0.00 0.00 46.55 2.52
2814 4088 5.512942 TCCTGTGTCTAATTTGATTCCCA 57.487 39.130 0.00 0.00 0.00 4.37
2857 4131 9.834628 AAAAACACATTACTCCGTGTATATTTG 57.165 29.630 0.00 0.00 45.37 2.32
3212 4486 4.966249 CATGCATGAAGTTGTGTAGACAG 58.034 43.478 22.59 0.00 32.26 3.51
3213 4487 3.402110 TGCATGAAGTTGTGTAGACAGG 58.598 45.455 0.00 0.00 32.26 4.00
3214 4488 2.744202 GCATGAAGTTGTGTAGACAGGG 59.256 50.000 0.00 0.00 32.26 4.45
3215 4489 3.807209 GCATGAAGTTGTGTAGACAGGGT 60.807 47.826 0.00 0.00 32.26 4.34
3216 4490 3.746045 TGAAGTTGTGTAGACAGGGTC 57.254 47.619 0.00 0.00 32.26 4.46
3217 4491 3.035363 TGAAGTTGTGTAGACAGGGTCA 58.965 45.455 0.00 0.00 34.60 4.02
3218 4492 3.452990 TGAAGTTGTGTAGACAGGGTCAA 59.547 43.478 0.00 0.00 34.60 3.18
3219 4493 3.470645 AGTTGTGTAGACAGGGTCAAC 57.529 47.619 5.99 5.99 34.60 3.18
3220 4494 3.039011 AGTTGTGTAGACAGGGTCAACT 58.961 45.455 9.41 9.41 39.98 3.16
3221 4495 3.131396 GTTGTGTAGACAGGGTCAACTG 58.869 50.000 0.00 0.00 44.03 3.16
3222 4496 1.691976 TGTGTAGACAGGGTCAACTGG 59.308 52.381 0.00 0.00 42.75 4.00
3225 4499 2.741092 GACAGGGTCAACTGGCGA 59.259 61.111 0.00 0.00 42.75 5.54
3226 4500 1.070786 GACAGGGTCAACTGGCGAA 59.929 57.895 0.00 0.00 42.75 4.70
3227 4501 0.534203 GACAGGGTCAACTGGCGAAA 60.534 55.000 0.00 0.00 42.75 3.46
3228 4502 0.535102 ACAGGGTCAACTGGCGAAAG 60.535 55.000 0.00 0.00 42.75 2.62
3229 4503 0.535102 CAGGGTCAACTGGCGAAAGT 60.535 55.000 0.00 0.00 34.84 2.66
3230 4504 0.535102 AGGGTCAACTGGCGAAAGTG 60.535 55.000 0.00 0.00 0.00 3.16
3231 4505 1.282875 GGTCAACTGGCGAAAGTGC 59.717 57.895 0.00 0.00 0.00 4.40
3232 4506 1.166531 GGTCAACTGGCGAAAGTGCT 61.167 55.000 0.00 0.00 34.52 4.40
3233 4507 0.663153 GTCAACTGGCGAAAGTGCTT 59.337 50.000 0.00 0.00 34.52 3.91
3234 4508 1.065551 GTCAACTGGCGAAAGTGCTTT 59.934 47.619 0.00 0.00 35.14 3.51
3235 4509 1.748493 TCAACTGGCGAAAGTGCTTTT 59.252 42.857 0.00 0.00 32.11 2.27
3236 4510 1.854126 CAACTGGCGAAAGTGCTTTTG 59.146 47.619 7.39 7.39 37.09 2.44
3237 4511 1.102978 ACTGGCGAAAGTGCTTTTGT 58.897 45.000 12.06 0.46 36.55 2.83
3238 4512 1.202290 ACTGGCGAAAGTGCTTTTGTG 60.202 47.619 12.06 6.85 36.55 3.33
3239 4513 1.065401 CTGGCGAAAGTGCTTTTGTGA 59.935 47.619 12.06 1.23 36.55 3.58
3240 4514 1.065401 TGGCGAAAGTGCTTTTGTGAG 59.935 47.619 12.06 0.00 36.55 3.51
3241 4515 1.123655 GCGAAAGTGCTTTTGTGAGC 58.876 50.000 12.06 0.00 43.00 4.26
3242 4516 1.758783 CGAAAGTGCTTTTGTGAGCC 58.241 50.000 0.00 0.00 42.01 4.70
3243 4517 1.334869 CGAAAGTGCTTTTGTGAGCCT 59.665 47.619 0.00 0.00 42.01 4.58
3244 4518 2.735823 GAAAGTGCTTTTGTGAGCCTG 58.264 47.619 0.00 0.00 42.01 4.85
3245 4519 2.057137 AAGTGCTTTTGTGAGCCTGA 57.943 45.000 0.00 0.00 42.01 3.86
3246 4520 1.602311 AGTGCTTTTGTGAGCCTGAG 58.398 50.000 0.00 0.00 42.01 3.35
3247 4521 0.039708 GTGCTTTTGTGAGCCTGAGC 60.040 55.000 0.00 0.00 42.01 4.26
3257 4531 3.810812 GCCTGAGCTGCAGTGATC 58.189 61.111 16.64 11.72 43.33 2.92
3258 4532 1.818785 GCCTGAGCTGCAGTGATCC 60.819 63.158 16.64 0.00 43.33 3.36
3259 4533 1.153208 CCTGAGCTGCAGTGATCCC 60.153 63.158 16.64 0.00 43.33 3.85
3260 4534 1.521010 CTGAGCTGCAGTGATCCCG 60.521 63.158 16.64 2.33 39.85 5.14
3261 4535 1.953231 CTGAGCTGCAGTGATCCCGA 61.953 60.000 16.64 0.00 39.85 5.14
3262 4536 1.219124 GAGCTGCAGTGATCCCGAA 59.781 57.895 16.64 0.00 0.00 4.30
3263 4537 0.391661 GAGCTGCAGTGATCCCGAAA 60.392 55.000 16.64 0.00 0.00 3.46
3264 4538 0.254178 AGCTGCAGTGATCCCGAAAT 59.746 50.000 16.64 0.00 0.00 2.17
3265 4539 0.659957 GCTGCAGTGATCCCGAAATC 59.340 55.000 16.64 0.00 0.00 2.17
3266 4540 1.745141 GCTGCAGTGATCCCGAAATCT 60.745 52.381 16.64 0.00 0.00 2.40
3267 4541 1.938577 CTGCAGTGATCCCGAAATCTG 59.061 52.381 5.25 0.00 0.00 2.90
3268 4542 1.278985 TGCAGTGATCCCGAAATCTGT 59.721 47.619 0.00 0.00 0.00 3.41
3269 4543 2.499693 TGCAGTGATCCCGAAATCTGTA 59.500 45.455 0.00 0.00 0.00 2.74
3270 4544 2.866762 GCAGTGATCCCGAAATCTGTAC 59.133 50.000 0.00 0.00 0.00 2.90
3271 4545 3.458189 CAGTGATCCCGAAATCTGTACC 58.542 50.000 0.00 0.00 0.00 3.34
3272 4546 3.104512 AGTGATCCCGAAATCTGTACCA 58.895 45.455 0.00 0.00 0.00 3.25
3273 4547 3.118738 AGTGATCCCGAAATCTGTACCAC 60.119 47.826 0.00 0.00 0.00 4.16
3274 4548 3.104512 TGATCCCGAAATCTGTACCACT 58.895 45.455 0.00 0.00 0.00 4.00
3275 4549 4.098960 GTGATCCCGAAATCTGTACCACTA 59.901 45.833 0.00 0.00 0.00 2.74
3276 4550 4.098960 TGATCCCGAAATCTGTACCACTAC 59.901 45.833 0.00 0.00 0.00 2.73
3277 4551 3.705051 TCCCGAAATCTGTACCACTACT 58.295 45.455 0.00 0.00 0.00 2.57
3278 4552 4.091549 TCCCGAAATCTGTACCACTACTT 58.908 43.478 0.00 0.00 0.00 2.24
3279 4553 4.159135 TCCCGAAATCTGTACCACTACTTC 59.841 45.833 0.00 0.00 0.00 3.01
3280 4554 4.081862 CCCGAAATCTGTACCACTACTTCA 60.082 45.833 0.00 0.00 0.00 3.02
3281 4555 5.395324 CCCGAAATCTGTACCACTACTTCAT 60.395 44.000 0.00 0.00 0.00 2.57
3282 4556 5.749109 CCGAAATCTGTACCACTACTTCATC 59.251 44.000 0.00 0.00 0.00 2.92
3283 4557 6.405953 CCGAAATCTGTACCACTACTTCATCT 60.406 42.308 0.00 0.00 0.00 2.90
3284 4558 7.036220 CGAAATCTGTACCACTACTTCATCTT 58.964 38.462 0.00 0.00 0.00 2.40
3285 4559 8.188799 CGAAATCTGTACCACTACTTCATCTTA 58.811 37.037 0.00 0.00 0.00 2.10
3286 4560 9.303537 GAAATCTGTACCACTACTTCATCTTAC 57.696 37.037 0.00 0.00 0.00 2.34
3287 4561 6.432607 TCTGTACCACTACTTCATCTTACG 57.567 41.667 0.00 0.00 0.00 3.18
3288 4562 6.175471 TCTGTACCACTACTTCATCTTACGA 58.825 40.000 0.00 0.00 0.00 3.43
3289 4563 6.827251 TCTGTACCACTACTTCATCTTACGAT 59.173 38.462 0.00 0.00 0.00 3.73
3290 4564 7.012138 TCTGTACCACTACTTCATCTTACGATC 59.988 40.741 0.00 0.00 0.00 3.69
3291 4565 5.171147 ACCACTACTTCATCTTACGATCG 57.829 43.478 14.88 14.88 0.00 3.69
3292 4566 4.880120 ACCACTACTTCATCTTACGATCGA 59.120 41.667 24.34 2.23 0.00 3.59
3293 4567 5.531659 ACCACTACTTCATCTTACGATCGAT 59.468 40.000 24.34 8.79 0.00 3.59
3294 4568 5.853810 CCACTACTTCATCTTACGATCGATG 59.146 44.000 24.34 14.84 38.64 3.84
3295 4569 5.340932 CACTACTTCATCTTACGATCGATGC 59.659 44.000 24.34 0.00 37.52 3.91
3296 4570 4.307443 ACTTCATCTTACGATCGATGCA 57.693 40.909 24.34 4.39 37.52 3.96
3297 4571 4.682787 ACTTCATCTTACGATCGATGCAA 58.317 39.130 24.34 8.86 37.52 4.08
3298 4572 4.504461 ACTTCATCTTACGATCGATGCAAC 59.496 41.667 24.34 0.00 37.52 4.17
3299 4573 3.381045 TCATCTTACGATCGATGCAACC 58.619 45.455 24.34 0.00 37.52 3.77
3300 4574 2.951457 TCTTACGATCGATGCAACCA 57.049 45.000 24.34 0.00 0.00 3.67
3301 4575 2.809446 TCTTACGATCGATGCAACCAG 58.191 47.619 24.34 5.35 0.00 4.00
3302 4576 2.425668 TCTTACGATCGATGCAACCAGA 59.574 45.455 24.34 7.54 0.00 3.86
3303 4577 2.492019 TACGATCGATGCAACCAGAG 57.508 50.000 24.34 0.00 0.00 3.35
3304 4578 0.179100 ACGATCGATGCAACCAGAGG 60.179 55.000 24.34 0.00 0.00 3.69
3305 4579 0.179100 CGATCGATGCAACCAGAGGT 60.179 55.000 10.26 0.00 37.65 3.85
3306 4580 1.067060 CGATCGATGCAACCAGAGGTA 59.933 52.381 10.26 0.00 33.12 3.08
3307 4581 2.474816 GATCGATGCAACCAGAGGTAC 58.525 52.381 0.54 0.00 33.12 3.34
3309 4583 1.204704 TCGATGCAACCAGAGGTACTG 59.795 52.381 0.00 0.00 41.55 2.74
3334 4608 3.264574 GCATAAGGCCCACAAGTCA 57.735 52.632 0.00 0.00 36.11 3.41
3335 4609 1.544724 GCATAAGGCCCACAAGTCAA 58.455 50.000 0.00 0.00 36.11 3.18
3336 4610 1.892474 GCATAAGGCCCACAAGTCAAA 59.108 47.619 0.00 0.00 36.11 2.69
3337 4611 2.497273 GCATAAGGCCCACAAGTCAAAT 59.503 45.455 0.00 0.00 36.11 2.32
3338 4612 3.676873 GCATAAGGCCCACAAGTCAAATG 60.677 47.826 0.00 0.00 36.11 2.32
3339 4613 0.681175 AAGGCCCACAAGTCAAATGC 59.319 50.000 0.00 0.00 0.00 3.56
3340 4614 1.187567 AGGCCCACAAGTCAAATGCC 61.188 55.000 0.00 0.00 37.68 4.40
3341 4615 1.080569 GCCCACAAGTCAAATGCCG 60.081 57.895 0.00 0.00 0.00 5.69
3342 4616 1.805428 GCCCACAAGTCAAATGCCGT 61.805 55.000 0.00 0.00 0.00 5.68
3343 4617 0.673437 CCCACAAGTCAAATGCCGTT 59.327 50.000 0.00 0.00 0.00 4.44
3344 4618 1.335872 CCCACAAGTCAAATGCCGTTC 60.336 52.381 0.00 0.00 0.00 3.95
3345 4619 1.336440 CCACAAGTCAAATGCCGTTCA 59.664 47.619 0.00 0.00 0.00 3.18
3346 4620 2.223688 CCACAAGTCAAATGCCGTTCAA 60.224 45.455 0.00 0.00 0.00 2.69
3347 4621 3.552684 CCACAAGTCAAATGCCGTTCAAT 60.553 43.478 0.00 0.00 0.00 2.57
3348 4622 4.050553 CACAAGTCAAATGCCGTTCAATT 58.949 39.130 0.00 0.00 0.00 2.32
3349 4623 5.218885 CACAAGTCAAATGCCGTTCAATTA 58.781 37.500 0.00 0.00 0.00 1.40
3350 4624 5.689514 CACAAGTCAAATGCCGTTCAATTAA 59.310 36.000 0.00 0.00 0.00 1.40
3351 4625 5.689961 ACAAGTCAAATGCCGTTCAATTAAC 59.310 36.000 0.00 0.00 34.52 2.01
3352 4626 4.805219 AGTCAAATGCCGTTCAATTAACC 58.195 39.130 0.00 0.00 34.33 2.85
3353 4627 3.924073 GTCAAATGCCGTTCAATTAACCC 59.076 43.478 0.00 0.00 34.33 4.11
3354 4628 3.056465 TCAAATGCCGTTCAATTAACCCC 60.056 43.478 0.00 0.00 34.33 4.95
3355 4629 1.099689 ATGCCGTTCAATTAACCCCG 58.900 50.000 0.00 0.00 34.33 5.73
3356 4630 0.250814 TGCCGTTCAATTAACCCCGT 60.251 50.000 0.00 0.00 34.33 5.28
3357 4631 0.448990 GCCGTTCAATTAACCCCGTC 59.551 55.000 0.00 0.00 34.33 4.79
3358 4632 1.810959 CCGTTCAATTAACCCCGTCA 58.189 50.000 0.00 0.00 34.33 4.35
3359 4633 1.465777 CCGTTCAATTAACCCCGTCAC 59.534 52.381 0.00 0.00 34.33 3.67
3360 4634 1.127213 CGTTCAATTAACCCCGTCACG 59.873 52.381 0.00 0.00 34.33 4.35
3361 4635 2.145536 GTTCAATTAACCCCGTCACGT 58.854 47.619 0.00 0.00 31.38 4.49
3362 4636 3.324993 GTTCAATTAACCCCGTCACGTA 58.675 45.455 0.00 0.00 31.38 3.57
3363 4637 3.891422 TCAATTAACCCCGTCACGTAT 57.109 42.857 0.00 0.00 0.00 3.06
3364 4638 3.784338 TCAATTAACCCCGTCACGTATC 58.216 45.455 0.00 0.00 0.00 2.24
3365 4639 2.497107 ATTAACCCCGTCACGTATCG 57.503 50.000 0.00 0.00 0.00 2.92
3366 4640 0.179140 TTAACCCCGTCACGTATCGC 60.179 55.000 0.00 0.00 0.00 4.58
3367 4641 1.031571 TAACCCCGTCACGTATCGCT 61.032 55.000 0.00 0.00 0.00 4.93
3368 4642 1.031571 AACCCCGTCACGTATCGCTA 61.032 55.000 0.00 0.00 0.00 4.26
3369 4643 0.820891 ACCCCGTCACGTATCGCTAT 60.821 55.000 0.00 0.00 0.00 2.97
3370 4644 0.386858 CCCCGTCACGTATCGCTATG 60.387 60.000 0.00 0.00 0.00 2.23
3371 4645 0.589708 CCCGTCACGTATCGCTATGA 59.410 55.000 0.00 0.00 0.00 2.15
3372 4646 1.662309 CCCGTCACGTATCGCTATGAC 60.662 57.143 0.00 0.00 38.46 3.06
3374 4648 1.671469 GTCACGTATCGCTATGACGG 58.329 55.000 0.00 0.00 40.84 4.79
3375 4649 0.589708 TCACGTATCGCTATGACGGG 59.410 55.000 0.00 0.00 41.33 5.28
3376 4650 0.589708 CACGTATCGCTATGACGGGA 59.410 55.000 0.00 0.00 42.58 5.14
3377 4651 0.590195 ACGTATCGCTATGACGGGAC 59.410 55.000 0.00 0.00 40.84 4.46
3378 4652 0.589708 CGTATCGCTATGACGGGACA 59.410 55.000 0.00 0.00 33.01 4.02
3379 4653 1.399855 CGTATCGCTATGACGGGACAG 60.400 57.143 0.00 0.00 33.01 3.51
3380 4654 1.878088 GTATCGCTATGACGGGACAGA 59.122 52.381 0.00 0.00 0.00 3.41
3381 4655 1.399714 ATCGCTATGACGGGACAGAA 58.600 50.000 0.00 0.00 0.00 3.02
3382 4656 0.738975 TCGCTATGACGGGACAGAAG 59.261 55.000 0.00 0.00 0.00 2.85
3383 4657 0.249073 CGCTATGACGGGACAGAAGG 60.249 60.000 0.00 0.00 0.00 3.46
3384 4658 1.112113 GCTATGACGGGACAGAAGGA 58.888 55.000 0.00 0.00 0.00 3.36
3385 4659 1.067821 GCTATGACGGGACAGAAGGAG 59.932 57.143 0.00 0.00 0.00 3.69
3386 4660 2.656002 CTATGACGGGACAGAAGGAGA 58.344 52.381 0.00 0.00 0.00 3.71
3387 4661 2.166907 ATGACGGGACAGAAGGAGAT 57.833 50.000 0.00 0.00 0.00 2.75
3388 4662 2.820728 TGACGGGACAGAAGGAGATA 57.179 50.000 0.00 0.00 0.00 1.98
3389 4663 2.376109 TGACGGGACAGAAGGAGATAC 58.624 52.381 0.00 0.00 0.00 2.24
3390 4664 2.291346 TGACGGGACAGAAGGAGATACA 60.291 50.000 0.00 0.00 0.00 2.29
3391 4665 2.099427 GACGGGACAGAAGGAGATACAC 59.901 54.545 0.00 0.00 0.00 2.90
3392 4666 1.065701 CGGGACAGAAGGAGATACACG 59.934 57.143 0.00 0.00 0.00 4.49
3393 4667 2.376109 GGGACAGAAGGAGATACACGA 58.624 52.381 0.00 0.00 0.00 4.35
3394 4668 2.959707 GGGACAGAAGGAGATACACGAT 59.040 50.000 0.00 0.00 0.00 3.73
3395 4669 3.243569 GGGACAGAAGGAGATACACGATG 60.244 52.174 0.00 0.00 0.00 3.84
3396 4670 3.381908 GGACAGAAGGAGATACACGATGT 59.618 47.826 0.00 0.00 0.00 3.06
3397 4671 4.355437 GACAGAAGGAGATACACGATGTG 58.645 47.826 0.00 0.00 39.75 3.21
3398 4672 3.131223 ACAGAAGGAGATACACGATGTGG 59.869 47.826 1.64 0.00 37.94 4.17
3399 4673 2.695666 AGAAGGAGATACACGATGTGGG 59.304 50.000 1.64 0.00 37.94 4.61
3400 4674 0.753262 AGGAGATACACGATGTGGGC 59.247 55.000 1.64 0.00 37.94 5.36
3401 4675 0.249911 GGAGATACACGATGTGGGCC 60.250 60.000 0.00 0.00 37.94 5.80
3402 4676 0.597637 GAGATACACGATGTGGGCCG 60.598 60.000 0.00 0.00 37.94 6.13
3403 4677 1.143183 GATACACGATGTGGGCCGT 59.857 57.895 0.00 0.00 37.94 5.68
3404 4678 0.874607 GATACACGATGTGGGCCGTC 60.875 60.000 0.00 0.00 37.94 4.79
3405 4679 1.327690 ATACACGATGTGGGCCGTCT 61.328 55.000 0.00 0.00 37.94 4.18
3406 4680 1.940883 TACACGATGTGGGCCGTCTC 61.941 60.000 0.00 0.00 37.94 3.36
3407 4681 2.994995 ACGATGTGGGCCGTCTCA 60.995 61.111 0.00 0.00 33.23 3.27
3408 4682 2.202797 CGATGTGGGCCGTCTCAG 60.203 66.667 0.00 0.00 0.00 3.35
3409 4683 2.512515 GATGTGGGCCGTCTCAGC 60.513 66.667 0.00 0.00 0.00 4.26
3416 4690 4.625800 GCCGTCTCAGCCAAGATT 57.374 55.556 0.00 0.00 0.00 2.40
3417 4691 2.388347 GCCGTCTCAGCCAAGATTC 58.612 57.895 0.00 0.00 0.00 2.52
3418 4692 0.107945 GCCGTCTCAGCCAAGATTCT 60.108 55.000 0.00 0.00 0.00 2.40
3419 4693 1.649664 CCGTCTCAGCCAAGATTCTG 58.350 55.000 0.00 0.00 0.00 3.02
3420 4694 1.649664 CGTCTCAGCCAAGATTCTGG 58.350 55.000 0.00 0.00 39.71 3.86
3421 4695 1.066573 CGTCTCAGCCAAGATTCTGGT 60.067 52.381 0.00 0.00 38.86 4.00
3422 4696 2.626840 GTCTCAGCCAAGATTCTGGTC 58.373 52.381 0.00 0.00 38.86 4.02
3423 4697 2.235898 GTCTCAGCCAAGATTCTGGTCT 59.764 50.000 0.00 0.00 38.86 3.85
3424 4698 3.449018 GTCTCAGCCAAGATTCTGGTCTA 59.551 47.826 0.00 0.00 38.86 2.59
3425 4699 4.081420 GTCTCAGCCAAGATTCTGGTCTAA 60.081 45.833 0.00 0.00 38.86 2.10
3426 4700 4.718774 TCTCAGCCAAGATTCTGGTCTAAT 59.281 41.667 0.00 0.00 38.86 1.73
3427 4701 4.774124 TCAGCCAAGATTCTGGTCTAATG 58.226 43.478 0.00 0.00 38.86 1.90
3428 4702 4.225942 TCAGCCAAGATTCTGGTCTAATGT 59.774 41.667 0.00 0.00 38.86 2.71
3429 4703 4.334759 CAGCCAAGATTCTGGTCTAATGTG 59.665 45.833 0.00 0.00 38.86 3.21
3430 4704 3.629398 GCCAAGATTCTGGTCTAATGTGG 59.371 47.826 0.00 0.00 38.86 4.17
3431 4705 4.626287 GCCAAGATTCTGGTCTAATGTGGA 60.626 45.833 0.00 0.00 38.86 4.02
3432 4706 4.878397 CCAAGATTCTGGTCTAATGTGGAC 59.122 45.833 0.00 0.00 0.00 4.02
3436 4710 4.534401 GGTCTAATGTGGACCGGC 57.466 61.111 0.00 0.00 42.84 6.13
3437 4711 1.600107 GGTCTAATGTGGACCGGCA 59.400 57.895 0.00 0.00 42.84 5.69
3438 4712 0.035820 GGTCTAATGTGGACCGGCAA 60.036 55.000 0.00 0.00 42.84 4.52
3439 4713 1.612199 GGTCTAATGTGGACCGGCAAA 60.612 52.381 0.00 0.00 42.84 3.68
3440 4714 1.467342 GTCTAATGTGGACCGGCAAAC 59.533 52.381 0.00 0.00 0.00 2.93
3441 4715 0.808755 CTAATGTGGACCGGCAAACC 59.191 55.000 0.00 0.25 0.00 3.27
3442 4716 0.609681 TAATGTGGACCGGCAAACCC 60.610 55.000 0.00 0.00 0.00 4.11
3443 4717 2.648613 AATGTGGACCGGCAAACCCA 62.649 55.000 0.00 0.00 0.00 4.51
3444 4718 2.282887 GTGGACCGGCAAACCCAT 60.283 61.111 0.00 0.00 0.00 4.00
3445 4719 1.906333 GTGGACCGGCAAACCCATT 60.906 57.895 0.00 0.00 0.00 3.16
3446 4720 1.152440 TGGACCGGCAAACCCATTT 60.152 52.632 0.00 0.00 0.00 2.32
3447 4721 0.112606 TGGACCGGCAAACCCATTTA 59.887 50.000 0.00 0.00 0.00 1.40
3448 4722 0.528924 GGACCGGCAAACCCATTTAC 59.471 55.000 0.00 0.00 0.00 2.01
3449 4723 1.541379 GACCGGCAAACCCATTTACT 58.459 50.000 0.00 0.00 0.00 2.24
3450 4724 2.618559 GGACCGGCAAACCCATTTACTA 60.619 50.000 0.00 0.00 0.00 1.82
3451 4725 2.421073 GACCGGCAAACCCATTTACTAC 59.579 50.000 0.00 0.00 0.00 2.73
3452 4726 2.224818 ACCGGCAAACCCATTTACTACA 60.225 45.455 0.00 0.00 0.00 2.74
3453 4727 2.820787 CCGGCAAACCCATTTACTACAA 59.179 45.455 0.00 0.00 0.00 2.41
3454 4728 3.256136 CCGGCAAACCCATTTACTACAAA 59.744 43.478 0.00 0.00 0.00 2.83
3455 4729 4.231439 CGGCAAACCCATTTACTACAAAC 58.769 43.478 0.00 0.00 0.00 2.93
3456 4730 4.562082 GGCAAACCCATTTACTACAAACC 58.438 43.478 0.00 0.00 0.00 3.27
3457 4731 4.039366 GGCAAACCCATTTACTACAAACCA 59.961 41.667 0.00 0.00 0.00 3.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
119 137 9.912634 TGAGAATTTCACAAAACAGGATTATTC 57.087 29.630 0.00 0.00 0.00 1.75
415 1572 4.475747 TCGAGGGGGTTTTAAGGTATGAAT 59.524 41.667 0.00 0.00 0.00 2.57
430 1587 3.857157 TCATCCTTTAAATCGAGGGGG 57.143 47.619 0.00 0.00 33.73 5.40
489 1660 4.917415 CGAGGGCATTTAAGAGTTTTGTTG 59.083 41.667 0.00 0.00 0.00 3.33
717 1889 6.038825 CACTAGTGTGTAACCCATGTTTTTCA 59.961 38.462 15.06 0.00 39.24 2.69
738 1910 5.123027 TGCATATTTTTCATGTCGCACACTA 59.877 36.000 0.00 0.00 0.00 2.74
740 1912 4.165036 TGCATATTTTTCATGTCGCACAC 58.835 39.130 0.00 0.00 0.00 3.82
746 1918 8.667987 TTTCGTACTTGCATATTTTTCATGTC 57.332 30.769 0.00 0.00 0.00 3.06
763 1935 7.417570 CCCTACTTCTCAACCATATTTCGTACT 60.418 40.741 0.00 0.00 0.00 2.73
767 1939 5.914033 TCCCTACTTCTCAACCATATTTCG 58.086 41.667 0.00 0.00 0.00 3.46
779 1951 4.086457 GAGATCCTCCATCCCTACTTCTC 58.914 52.174 0.00 0.00 30.71 2.87
782 1954 4.500389 ATGAGATCCTCCATCCCTACTT 57.500 45.455 0.00 0.00 30.71 2.24
797 1969 6.928520 TGAGCAATGATCGTACATATGAGAT 58.071 36.000 10.38 10.76 0.00 2.75
804 1976 4.122776 GTCCTTGAGCAATGATCGTACAT 58.877 43.478 0.00 0.00 0.00 2.29
846 2018 8.088981 GGGAGAAATACGTAACATCACATCTAT 58.911 37.037 0.00 0.00 0.00 1.98
962 2139 0.918619 GTACGTCGCGTGCATATGTT 59.081 50.000 5.77 0.00 41.70 2.71
1015 2199 7.224753 ACGATGGTATAGCAATCTTAAGTGTTG 59.775 37.037 8.98 14.77 0.00 3.33
1070 2254 1.129251 CAGCGAGTGTAGTTGCAATGG 59.871 52.381 0.59 0.00 0.00 3.16
1089 2273 0.817634 CCTTTGTGAGAACGGCACCA 60.818 55.000 0.00 0.00 35.43 4.17
1482 2673 4.630111 TGGCAAAAAGTTCATCAATGACC 58.370 39.130 0.00 0.00 36.36 4.02
1545 2810 2.194201 GGCTAAACCCACTGCTGTTA 57.806 50.000 0.00 0.00 0.00 2.41
1557 2822 3.014623 GTTGGATGGTACTGGGCTAAAC 58.985 50.000 0.00 0.00 0.00 2.01
1566 2831 0.973632 TGTCAGCGTTGGATGGTACT 59.026 50.000 0.00 0.00 0.00 2.73
1612 2878 2.037772 GGTTCATGAGGCGGATATCACT 59.962 50.000 4.83 0.00 0.00 3.41
1746 3012 7.280876 CGCATATTTCCTGCATAGTATAATGGT 59.719 37.037 0.00 0.00 39.64 3.55
1810 3076 2.670934 CAAGAGCTTGGCGGCACT 60.671 61.111 12.92 6.46 36.95 4.40
1995 3261 2.168936 TCCGGTTACCGTGATATTTGCT 59.831 45.455 22.78 0.00 46.80 3.91
2080 3346 3.854669 CGCCCTCCTTGAGCCGAT 61.855 66.667 0.00 0.00 0.00 4.18
2083 3349 3.077556 TCTCGCCCTCCTTGAGCC 61.078 66.667 0.00 0.00 0.00 4.70
2105 3371 2.289010 GCAAGACAAAAGTTGGGGATGG 60.289 50.000 0.00 0.00 34.12 3.51
2202 3468 1.355971 GCGATGCCTCAACGTTCTTA 58.644 50.000 0.00 0.00 32.42 2.10
2206 3472 1.019278 ATTCGCGATGCCTCAACGTT 61.019 50.000 10.88 0.00 32.42 3.99
2208 3474 1.011904 CATTCGCGATGCCTCAACG 60.012 57.895 10.88 0.00 32.96 4.10
2398 3664 2.074948 AGCTAGCCCAGGGTCCATG 61.075 63.158 12.13 0.00 0.00 3.66
2461 3727 6.266168 AGATGTCGATGTCATTATCCTCTC 57.734 41.667 0.00 0.00 0.00 3.20
2494 3768 1.336632 GGAGGAGGAGCATCAGCAGT 61.337 60.000 0.00 0.00 45.49 4.40
2495 3769 1.049855 AGGAGGAGGAGCATCAGCAG 61.050 60.000 0.00 0.00 45.49 4.24
2501 3775 1.235696 GGAGGAGGAGGAGGAGCAT 59.764 63.158 0.00 0.00 0.00 3.79
2502 3776 1.938596 AGGAGGAGGAGGAGGAGCA 60.939 63.158 0.00 0.00 0.00 4.26
2503 3777 1.152546 GAGGAGGAGGAGGAGGAGC 60.153 68.421 0.00 0.00 0.00 4.70
2504 3778 0.998945 AGGAGGAGGAGGAGGAGGAG 60.999 65.000 0.00 0.00 0.00 3.69
2505 3779 0.996762 GAGGAGGAGGAGGAGGAGGA 60.997 65.000 0.00 0.00 0.00 3.71
2506 3780 1.541672 GAGGAGGAGGAGGAGGAGG 59.458 68.421 0.00 0.00 0.00 4.30
2507 3781 0.998945 AGGAGGAGGAGGAGGAGGAG 60.999 65.000 0.00 0.00 0.00 3.69
2508 3782 0.996762 GAGGAGGAGGAGGAGGAGGA 60.997 65.000 0.00 0.00 0.00 3.71
2509 3783 1.541672 GAGGAGGAGGAGGAGGAGG 59.458 68.421 0.00 0.00 0.00 4.30
2510 3784 0.998945 AGGAGGAGGAGGAGGAGGAG 60.999 65.000 0.00 0.00 0.00 3.69
2511 3785 1.087725 AGGAGGAGGAGGAGGAGGA 59.912 63.158 0.00 0.00 0.00 3.71
2512 3786 1.232792 CAGGAGGAGGAGGAGGAGG 59.767 68.421 0.00 0.00 0.00 4.30
2513 3787 1.457455 GCAGGAGGAGGAGGAGGAG 60.457 68.421 0.00 0.00 0.00 3.69
2514 3788 1.938596 AGCAGGAGGAGGAGGAGGA 60.939 63.158 0.00 0.00 0.00 3.71
2515 3789 1.457455 GAGCAGGAGGAGGAGGAGG 60.457 68.421 0.00 0.00 0.00 4.30
2516 3790 1.457455 GGAGCAGGAGGAGGAGGAG 60.457 68.421 0.00 0.00 0.00 3.69
2517 3791 0.627768 TAGGAGCAGGAGGAGGAGGA 60.628 60.000 0.00 0.00 0.00 3.71
2518 3792 0.469144 GTAGGAGCAGGAGGAGGAGG 60.469 65.000 0.00 0.00 0.00 4.30
2519 3793 0.555769 AGTAGGAGCAGGAGGAGGAG 59.444 60.000 0.00 0.00 0.00 3.69
2520 3794 1.495574 GTAGTAGGAGCAGGAGGAGGA 59.504 57.143 0.00 0.00 0.00 3.71
2521 3795 1.497286 AGTAGTAGGAGCAGGAGGAGG 59.503 57.143 0.00 0.00 0.00 4.30
2522 3796 3.393278 AGTAGTAGTAGGAGCAGGAGGAG 59.607 52.174 0.00 0.00 0.00 3.69
2523 3797 3.395604 AGTAGTAGTAGGAGCAGGAGGA 58.604 50.000 0.00 0.00 0.00 3.71
2524 3798 3.868619 AGTAGTAGTAGGAGCAGGAGG 57.131 52.381 0.00 0.00 0.00 4.30
2525 3799 5.556006 AGTAGTAGTAGTAGGAGCAGGAG 57.444 47.826 0.00 0.00 0.00 3.69
2526 3800 6.142498 AGTAGTAGTAGTAGTAGGAGCAGGA 58.858 44.000 0.00 0.00 0.00 3.86
2527 3801 6.423776 AGTAGTAGTAGTAGTAGGAGCAGG 57.576 45.833 0.00 0.00 0.00 4.85
2528 3802 8.181904 AGTAGTAGTAGTAGTAGTAGGAGCAG 57.818 42.308 0.49 0.00 0.00 4.24
2529 3803 9.073475 GTAGTAGTAGTAGTAGTAGTAGGAGCA 57.927 40.741 7.10 0.00 0.00 4.26
2530 3804 9.297037 AGTAGTAGTAGTAGTAGTAGTAGGAGC 57.703 40.741 7.10 0.00 0.00 4.70
2589 3863 6.568869 ACTATGTGCTCTTCTAGATGTTGAC 58.431 40.000 5.60 2.39 0.00 3.18
2608 3882 8.491152 GTCTTTTTGTCGGATCATCATACTATG 58.509 37.037 0.00 0.00 0.00 2.23
2619 3893 5.409826 AGAAGTCATGTCTTTTTGTCGGATC 59.590 40.000 6.65 0.00 0.00 3.36
2623 3897 5.657470 TGAGAAGTCATGTCTTTTTGTCG 57.343 39.130 6.65 0.00 0.00 4.35
2624 3898 7.011857 AGAGTTGAGAAGTCATGTCTTTTTGTC 59.988 37.037 6.65 3.40 33.17 3.18
2626 3900 7.256756 AGAGTTGAGAAGTCATGTCTTTTTG 57.743 36.000 6.65 0.00 33.17 2.44
2631 3905 6.105333 GCAATAGAGTTGAGAAGTCATGTCT 58.895 40.000 0.00 0.00 33.17 3.41
2636 3910 3.582647 TGGGCAATAGAGTTGAGAAGTCA 59.417 43.478 0.00 0.00 33.17 3.41
2637 3911 4.207891 TGGGCAATAGAGTTGAGAAGTC 57.792 45.455 0.00 0.00 0.00 3.01
2641 3915 4.985538 ACTTTTGGGCAATAGAGTTGAGA 58.014 39.130 0.00 0.00 0.00 3.27
2645 3919 4.112634 TGGACTTTTGGGCAATAGAGTT 57.887 40.909 0.00 0.00 0.00 3.01
2650 3924 4.415596 AGAACATGGACTTTTGGGCAATA 58.584 39.130 0.00 0.00 0.00 1.90
2663 3937 8.065627 TCTACCCTCTCTAAATAAGAACATGGA 58.934 37.037 0.00 0.00 32.46 3.41
2686 3960 6.747414 AGTGCCCAACATATGACTATTCTA 57.253 37.500 10.38 0.00 0.00 2.10
2740 4014 3.375299 AGCAAAGCCGATACAATGACTTC 59.625 43.478 0.00 0.00 0.00 3.01
2767 4041 6.534634 AGTCCTCAAGCAACTTACAAGTTAT 58.465 36.000 7.02 0.00 46.89 1.89
2771 4045 4.214332 GGAAGTCCTCAAGCAACTTACAAG 59.786 45.833 0.00 0.00 34.58 3.16
2772 4046 4.134563 GGAAGTCCTCAAGCAACTTACAA 58.865 43.478 0.00 0.00 34.58 2.41
2774 4048 3.748568 CAGGAAGTCCTCAAGCAACTTAC 59.251 47.826 0.00 0.00 46.65 2.34
2788 4062 6.094186 GGGAATCAAATTAGACACAGGAAGTC 59.906 42.308 0.00 0.00 36.26 3.01
2792 4066 5.512942 TGGGAATCAAATTAGACACAGGA 57.487 39.130 0.00 0.00 0.00 3.86
2831 4105 9.834628 CAAATATACACGGAGTAATGTGTTTTT 57.165 29.630 3.12 0.49 46.61 1.94
3190 4464 4.142752 CCTGTCTACACAACTTCATGCATG 60.143 45.833 21.07 21.07 29.82 4.06
3191 4465 4.005650 CCTGTCTACACAACTTCATGCAT 58.994 43.478 0.00 0.00 29.82 3.96
3192 4466 3.402110 CCTGTCTACACAACTTCATGCA 58.598 45.455 0.00 0.00 29.82 3.96
3193 4467 2.744202 CCCTGTCTACACAACTTCATGC 59.256 50.000 0.00 0.00 29.82 4.06
3194 4468 3.997021 GACCCTGTCTACACAACTTCATG 59.003 47.826 0.00 0.00 29.82 3.07
3195 4469 3.646162 TGACCCTGTCTACACAACTTCAT 59.354 43.478 0.00 0.00 33.15 2.57
3196 4470 3.035363 TGACCCTGTCTACACAACTTCA 58.965 45.455 0.00 0.00 33.15 3.02
3197 4471 3.746045 TGACCCTGTCTACACAACTTC 57.254 47.619 0.00 0.00 33.15 3.01
3198 4472 3.454812 AGTTGACCCTGTCTACACAACTT 59.545 43.478 9.70 0.00 43.02 2.66
3199 4473 3.039011 AGTTGACCCTGTCTACACAACT 58.961 45.455 9.70 9.70 39.86 3.16
3200 4474 3.131396 CAGTTGACCCTGTCTACACAAC 58.869 50.000 10.53 0.00 39.86 3.32
3201 4475 2.104111 CCAGTTGACCCTGTCTACACAA 59.896 50.000 10.53 0.00 39.86 3.33
3202 4476 1.691976 CCAGTTGACCCTGTCTACACA 59.308 52.381 10.53 0.00 39.86 3.72
3203 4477 1.608283 GCCAGTTGACCCTGTCTACAC 60.608 57.143 10.53 0.00 39.86 2.90
3204 4478 0.685097 GCCAGTTGACCCTGTCTACA 59.315 55.000 10.53 0.00 39.86 2.74
3205 4479 0.389948 CGCCAGTTGACCCTGTCTAC 60.390 60.000 1.38 1.38 38.25 2.59
3206 4480 0.541063 TCGCCAGTTGACCCTGTCTA 60.541 55.000 0.00 0.00 33.15 2.59
3207 4481 1.407656 TTCGCCAGTTGACCCTGTCT 61.408 55.000 0.00 0.00 33.15 3.41
3208 4482 0.534203 TTTCGCCAGTTGACCCTGTC 60.534 55.000 0.00 0.00 0.00 3.51
3209 4483 0.535102 CTTTCGCCAGTTGACCCTGT 60.535 55.000 0.00 0.00 0.00 4.00
3210 4484 0.535102 ACTTTCGCCAGTTGACCCTG 60.535 55.000 0.00 0.00 0.00 4.45
3211 4485 0.535102 CACTTTCGCCAGTTGACCCT 60.535 55.000 0.00 0.00 0.00 4.34
3212 4486 1.949257 CACTTTCGCCAGTTGACCC 59.051 57.895 0.00 0.00 0.00 4.46
3213 4487 1.166531 AGCACTTTCGCCAGTTGACC 61.167 55.000 0.00 0.00 0.00 4.02
3214 4488 0.663153 AAGCACTTTCGCCAGTTGAC 59.337 50.000 0.00 0.00 0.00 3.18
3215 4489 1.388547 AAAGCACTTTCGCCAGTTGA 58.611 45.000 0.00 0.00 0.00 3.18
3216 4490 1.854126 CAAAAGCACTTTCGCCAGTTG 59.146 47.619 0.00 0.00 31.45 3.16
3217 4491 1.476488 ACAAAAGCACTTTCGCCAGTT 59.524 42.857 0.00 0.00 31.45 3.16
3218 4492 1.102978 ACAAAAGCACTTTCGCCAGT 58.897 45.000 0.00 0.00 31.45 4.00
3219 4493 1.065401 TCACAAAAGCACTTTCGCCAG 59.935 47.619 0.00 0.00 31.45 4.85
3220 4494 1.065401 CTCACAAAAGCACTTTCGCCA 59.935 47.619 0.00 0.00 31.45 5.69
3221 4495 1.758783 CTCACAAAAGCACTTTCGCC 58.241 50.000 0.00 0.00 31.45 5.54
3222 4496 1.123655 GCTCACAAAAGCACTTTCGC 58.876 50.000 0.00 0.00 42.05 4.70
3223 4497 1.334869 AGGCTCACAAAAGCACTTTCG 59.665 47.619 0.00 0.00 44.35 3.46
3224 4498 2.358898 TCAGGCTCACAAAAGCACTTTC 59.641 45.455 0.00 0.00 44.35 2.62
3225 4499 2.360165 CTCAGGCTCACAAAAGCACTTT 59.640 45.455 0.00 0.00 44.35 2.66
3226 4500 1.952296 CTCAGGCTCACAAAAGCACTT 59.048 47.619 0.00 0.00 44.35 3.16
3227 4501 1.602311 CTCAGGCTCACAAAAGCACT 58.398 50.000 0.00 0.00 44.35 4.40
3228 4502 0.039708 GCTCAGGCTCACAAAAGCAC 60.040 55.000 0.00 0.00 44.35 4.40
3229 4503 2.334307 GCTCAGGCTCACAAAAGCA 58.666 52.632 0.00 0.00 44.35 3.91
3243 4517 1.543944 TTCGGGATCACTGCAGCTCA 61.544 55.000 15.27 0.00 0.00 4.26
3244 4518 0.391661 TTTCGGGATCACTGCAGCTC 60.392 55.000 15.27 8.31 0.00 4.09
3245 4519 0.254178 ATTTCGGGATCACTGCAGCT 59.746 50.000 15.27 0.00 0.00 4.24
3246 4520 0.659957 GATTTCGGGATCACTGCAGC 59.340 55.000 15.27 0.00 0.00 5.25
3247 4521 1.938577 CAGATTTCGGGATCACTGCAG 59.061 52.381 13.48 13.48 0.00 4.41
3248 4522 1.278985 ACAGATTTCGGGATCACTGCA 59.721 47.619 0.00 0.00 0.00 4.41
3249 4523 2.029838 ACAGATTTCGGGATCACTGC 57.970 50.000 0.00 0.00 0.00 4.40
3250 4524 3.118775 TGGTACAGATTTCGGGATCACTG 60.119 47.826 0.00 0.00 0.00 3.66
3251 4525 3.104512 TGGTACAGATTTCGGGATCACT 58.895 45.455 0.00 0.00 0.00 3.41
3252 4526 3.118738 AGTGGTACAGATTTCGGGATCAC 60.119 47.826 0.00 0.00 41.80 3.06
3253 4527 3.104512 AGTGGTACAGATTTCGGGATCA 58.895 45.455 0.00 0.00 41.80 2.92
3254 4528 3.821421 AGTGGTACAGATTTCGGGATC 57.179 47.619 0.00 0.00 41.80 3.36
3255 4529 4.287552 AGTAGTGGTACAGATTTCGGGAT 58.712 43.478 0.00 0.00 41.80 3.85
3256 4530 3.705051 AGTAGTGGTACAGATTTCGGGA 58.295 45.455 0.00 0.00 41.80 5.14
3257 4531 4.081862 TGAAGTAGTGGTACAGATTTCGGG 60.082 45.833 0.00 0.00 41.80 5.14
3258 4532 5.068234 TGAAGTAGTGGTACAGATTTCGG 57.932 43.478 0.00 0.00 41.80 4.30
3259 4533 6.565234 AGATGAAGTAGTGGTACAGATTTCG 58.435 40.000 0.00 0.00 41.80 3.46
3260 4534 9.303537 GTAAGATGAAGTAGTGGTACAGATTTC 57.696 37.037 0.00 0.00 41.80 2.17
3261 4535 7.974501 CGTAAGATGAAGTAGTGGTACAGATTT 59.025 37.037 0.00 0.00 38.99 2.17
3262 4536 7.338703 TCGTAAGATGAAGTAGTGGTACAGATT 59.661 37.037 0.00 0.00 45.01 2.40
3263 4537 6.827251 TCGTAAGATGAAGTAGTGGTACAGAT 59.173 38.462 0.00 0.00 45.01 2.90
3264 4538 6.175471 TCGTAAGATGAAGTAGTGGTACAGA 58.825 40.000 0.00 0.00 45.01 3.41
3265 4539 6.432607 TCGTAAGATGAAGTAGTGGTACAG 57.567 41.667 0.00 0.00 45.01 2.74
3282 4556 2.791560 CTCTGGTTGCATCGATCGTAAG 59.208 50.000 15.94 7.38 0.00 2.34
3283 4557 2.481276 CCTCTGGTTGCATCGATCGTAA 60.481 50.000 15.94 4.06 0.00 3.18
3284 4558 1.067060 CCTCTGGTTGCATCGATCGTA 59.933 52.381 15.94 2.15 0.00 3.43
3285 4559 0.179100 CCTCTGGTTGCATCGATCGT 60.179 55.000 15.94 0.00 0.00 3.73
3286 4560 0.179100 ACCTCTGGTTGCATCGATCG 60.179 55.000 9.36 9.36 27.29 3.69
3287 4561 2.101582 AGTACCTCTGGTTGCATCGATC 59.898 50.000 0.00 0.00 37.09 3.69
3288 4562 2.111384 AGTACCTCTGGTTGCATCGAT 58.889 47.619 0.00 0.00 37.09 3.59
3289 4563 1.204704 CAGTACCTCTGGTTGCATCGA 59.795 52.381 0.00 0.00 40.23 3.59
3290 4564 1.645034 CAGTACCTCTGGTTGCATCG 58.355 55.000 0.00 0.00 40.23 3.84
3299 4573 1.557099 TGCCTGTACCAGTACCTCTG 58.443 55.000 5.53 0.00 43.27 3.35
3300 4574 2.552093 ATGCCTGTACCAGTACCTCT 57.448 50.000 5.53 0.00 35.26 3.69
3301 4575 3.069729 CCTTATGCCTGTACCAGTACCTC 59.930 52.174 5.53 0.00 35.26 3.85
3302 4576 3.039011 CCTTATGCCTGTACCAGTACCT 58.961 50.000 5.53 0.00 35.26 3.08
3303 4577 2.484947 GCCTTATGCCTGTACCAGTACC 60.485 54.545 5.53 0.00 35.26 3.34
3304 4578 2.835027 GCCTTATGCCTGTACCAGTAC 58.165 52.381 0.86 0.86 36.63 2.73
3316 4590 1.544724 TTGACTTGTGGGCCTTATGC 58.455 50.000 4.53 0.00 40.16 3.14
3317 4591 3.676873 GCATTTGACTTGTGGGCCTTATG 60.677 47.826 4.53 0.00 0.00 1.90
3318 4592 2.497273 GCATTTGACTTGTGGGCCTTAT 59.503 45.455 4.53 0.00 0.00 1.73
3319 4593 1.892474 GCATTTGACTTGTGGGCCTTA 59.108 47.619 4.53 0.00 0.00 2.69
3320 4594 0.681175 GCATTTGACTTGTGGGCCTT 59.319 50.000 4.53 0.00 0.00 4.35
3321 4595 1.187567 GGCATTTGACTTGTGGGCCT 61.188 55.000 4.53 0.00 37.00 5.19
3322 4596 1.293179 GGCATTTGACTTGTGGGCC 59.707 57.895 0.00 0.00 0.00 5.80
3323 4597 1.080569 CGGCATTTGACTTGTGGGC 60.081 57.895 0.00 0.00 0.00 5.36
3324 4598 0.673437 AACGGCATTTGACTTGTGGG 59.327 50.000 0.00 0.00 0.00 4.61
3325 4599 1.336440 TGAACGGCATTTGACTTGTGG 59.664 47.619 0.00 0.00 0.00 4.17
3326 4600 2.772568 TGAACGGCATTTGACTTGTG 57.227 45.000 0.00 0.00 0.00 3.33
3327 4601 4.320608 AATTGAACGGCATTTGACTTGT 57.679 36.364 0.00 0.00 0.00 3.16
3328 4602 5.118510 GGTTAATTGAACGGCATTTGACTTG 59.881 40.000 0.00 0.00 39.12 3.16
3329 4603 5.227152 GGTTAATTGAACGGCATTTGACTT 58.773 37.500 0.00 0.00 39.12 3.01
3330 4604 4.321675 GGGTTAATTGAACGGCATTTGACT 60.322 41.667 0.00 0.00 39.12 3.41
3331 4605 3.924073 GGGTTAATTGAACGGCATTTGAC 59.076 43.478 0.00 0.00 39.12 3.18
3332 4606 3.056465 GGGGTTAATTGAACGGCATTTGA 60.056 43.478 0.00 0.00 39.12 2.69
3333 4607 3.258228 GGGGTTAATTGAACGGCATTTG 58.742 45.455 0.00 0.00 39.12 2.32
3334 4608 2.094442 CGGGGTTAATTGAACGGCATTT 60.094 45.455 0.00 0.00 39.12 2.32
3335 4609 1.474879 CGGGGTTAATTGAACGGCATT 59.525 47.619 0.00 0.00 39.12 3.56
3336 4610 1.099689 CGGGGTTAATTGAACGGCAT 58.900 50.000 0.00 0.00 39.12 4.40
3337 4611 0.250814 ACGGGGTTAATTGAACGGCA 60.251 50.000 0.00 0.00 39.12 5.69
3338 4612 0.448990 GACGGGGTTAATTGAACGGC 59.551 55.000 0.00 0.00 39.12 5.68
3339 4613 1.465777 GTGACGGGGTTAATTGAACGG 59.534 52.381 0.00 0.00 39.12 4.44
3340 4614 1.127213 CGTGACGGGGTTAATTGAACG 59.873 52.381 0.00 0.00 39.12 3.95
3341 4615 2.145536 ACGTGACGGGGTTAATTGAAC 58.854 47.619 10.66 0.00 37.31 3.18
3342 4616 2.547299 ACGTGACGGGGTTAATTGAA 57.453 45.000 10.66 0.00 0.00 2.69
3343 4617 3.734597 CGATACGTGACGGGGTTAATTGA 60.735 47.826 10.66 0.00 0.00 2.57
3344 4618 2.536803 CGATACGTGACGGGGTTAATTG 59.463 50.000 10.66 0.00 0.00 2.32
3345 4619 2.813061 CGATACGTGACGGGGTTAATT 58.187 47.619 10.66 0.00 0.00 1.40
3346 4620 1.536709 GCGATACGTGACGGGGTTAAT 60.537 52.381 10.66 0.00 0.00 1.40
3347 4621 0.179140 GCGATACGTGACGGGGTTAA 60.179 55.000 10.66 0.00 0.00 2.01
3348 4622 1.031571 AGCGATACGTGACGGGGTTA 61.032 55.000 10.66 0.00 0.00 2.85
3349 4623 1.031571 TAGCGATACGTGACGGGGTT 61.032 55.000 10.66 0.00 0.00 4.11
3350 4624 0.820891 ATAGCGATACGTGACGGGGT 60.821 55.000 10.66 3.81 0.00 4.95
3351 4625 0.386858 CATAGCGATACGTGACGGGG 60.387 60.000 10.66 0.00 0.00 5.73
3352 4626 0.589708 TCATAGCGATACGTGACGGG 59.410 55.000 10.66 0.00 0.00 5.28
3353 4627 1.671469 GTCATAGCGATACGTGACGG 58.329 55.000 10.66 0.00 32.64 4.79
3355 4629 1.662309 CCCGTCATAGCGATACGTGAC 60.662 57.143 0.00 4.69 38.03 3.67
3356 4630 0.589708 CCCGTCATAGCGATACGTGA 59.410 55.000 0.00 0.00 34.90 4.35
3357 4631 0.589708 TCCCGTCATAGCGATACGTG 59.410 55.000 0.00 0.00 34.90 4.49
3358 4632 0.590195 GTCCCGTCATAGCGATACGT 59.410 55.000 0.00 0.00 34.90 3.57
3359 4633 0.589708 TGTCCCGTCATAGCGATACG 59.410 55.000 0.00 0.00 36.42 3.06
3360 4634 1.878088 TCTGTCCCGTCATAGCGATAC 59.122 52.381 0.00 0.00 0.00 2.24
3361 4635 2.265589 TCTGTCCCGTCATAGCGATA 57.734 50.000 0.00 0.00 0.00 2.92
3362 4636 1.338337 CTTCTGTCCCGTCATAGCGAT 59.662 52.381 0.00 0.00 0.00 4.58
3363 4637 0.738975 CTTCTGTCCCGTCATAGCGA 59.261 55.000 0.00 0.00 0.00 4.93
3364 4638 0.249073 CCTTCTGTCCCGTCATAGCG 60.249 60.000 0.00 0.00 0.00 4.26
3365 4639 1.067821 CTCCTTCTGTCCCGTCATAGC 59.932 57.143 0.00 0.00 0.00 2.97
3366 4640 2.656002 TCTCCTTCTGTCCCGTCATAG 58.344 52.381 0.00 0.00 0.00 2.23
3367 4641 2.820728 TCTCCTTCTGTCCCGTCATA 57.179 50.000 0.00 0.00 0.00 2.15
3368 4642 2.166907 ATCTCCTTCTGTCCCGTCAT 57.833 50.000 0.00 0.00 0.00 3.06
3369 4643 2.291346 TGTATCTCCTTCTGTCCCGTCA 60.291 50.000 0.00 0.00 0.00 4.35
3370 4644 2.099427 GTGTATCTCCTTCTGTCCCGTC 59.901 54.545 0.00 0.00 0.00 4.79
3371 4645 2.100989 GTGTATCTCCTTCTGTCCCGT 58.899 52.381 0.00 0.00 0.00 5.28
3372 4646 1.065701 CGTGTATCTCCTTCTGTCCCG 59.934 57.143 0.00 0.00 0.00 5.14
3373 4647 2.376109 TCGTGTATCTCCTTCTGTCCC 58.624 52.381 0.00 0.00 0.00 4.46
3374 4648 3.381908 ACATCGTGTATCTCCTTCTGTCC 59.618 47.826 0.00 0.00 0.00 4.02
3375 4649 4.355437 CACATCGTGTATCTCCTTCTGTC 58.645 47.826 0.00 0.00 0.00 3.51
3376 4650 3.131223 CCACATCGTGTATCTCCTTCTGT 59.869 47.826 0.00 0.00 0.00 3.41
3377 4651 3.491619 CCCACATCGTGTATCTCCTTCTG 60.492 52.174 0.00 0.00 0.00 3.02
3378 4652 2.695666 CCCACATCGTGTATCTCCTTCT 59.304 50.000 0.00 0.00 0.00 2.85
3379 4653 2.803492 GCCCACATCGTGTATCTCCTTC 60.803 54.545 0.00 0.00 0.00 3.46
3380 4654 1.139058 GCCCACATCGTGTATCTCCTT 59.861 52.381 0.00 0.00 0.00 3.36
3381 4655 0.753262 GCCCACATCGTGTATCTCCT 59.247 55.000 0.00 0.00 0.00 3.69
3382 4656 0.249911 GGCCCACATCGTGTATCTCC 60.250 60.000 0.00 0.00 0.00 3.71
3383 4657 0.597637 CGGCCCACATCGTGTATCTC 60.598 60.000 0.00 0.00 0.00 2.75
3384 4658 1.327690 ACGGCCCACATCGTGTATCT 61.328 55.000 0.00 0.00 38.25 1.98
3385 4659 0.874607 GACGGCCCACATCGTGTATC 60.875 60.000 0.00 0.00 39.88 2.24
3386 4660 1.143183 GACGGCCCACATCGTGTAT 59.857 57.895 0.00 0.00 39.88 2.29
3387 4661 1.940883 GAGACGGCCCACATCGTGTA 61.941 60.000 0.00 0.00 39.88 2.90
3388 4662 3.296709 GAGACGGCCCACATCGTGT 62.297 63.158 0.00 0.00 39.88 4.49
3389 4663 2.509336 GAGACGGCCCACATCGTG 60.509 66.667 0.00 0.00 39.88 4.35
3390 4664 2.994995 TGAGACGGCCCACATCGT 60.995 61.111 0.00 0.00 42.67 3.73
3391 4665 2.202797 CTGAGACGGCCCACATCG 60.203 66.667 0.00 0.00 0.00 3.84
3392 4666 2.512515 GCTGAGACGGCCCACATC 60.513 66.667 0.00 0.00 0.00 3.06
3399 4673 0.107945 AGAATCTTGGCTGAGACGGC 60.108 55.000 0.00 0.00 34.56 5.68
3400 4674 1.649664 CAGAATCTTGGCTGAGACGG 58.350 55.000 0.00 0.00 34.06 4.79
3401 4675 1.066573 ACCAGAATCTTGGCTGAGACG 60.067 52.381 0.00 0.00 42.18 4.18
3402 4676 2.235898 AGACCAGAATCTTGGCTGAGAC 59.764 50.000 0.00 0.00 42.18 3.36
3403 4677 2.544721 AGACCAGAATCTTGGCTGAGA 58.455 47.619 0.00 0.00 42.18 3.27
3404 4678 4.478206 TTAGACCAGAATCTTGGCTGAG 57.522 45.455 0.00 0.00 42.18 3.35
3405 4679 4.225942 ACATTAGACCAGAATCTTGGCTGA 59.774 41.667 0.00 0.00 42.18 4.26
3406 4680 4.334759 CACATTAGACCAGAATCTTGGCTG 59.665 45.833 0.00 0.00 42.18 4.85
3407 4681 4.521146 CACATTAGACCAGAATCTTGGCT 58.479 43.478 0.00 0.00 42.18 4.75
3408 4682 3.629398 CCACATTAGACCAGAATCTTGGC 59.371 47.826 0.00 0.00 42.18 4.52
3409 4683 4.878397 GTCCACATTAGACCAGAATCTTGG 59.122 45.833 0.00 0.00 44.09 3.61
3420 4694 1.467342 GTTTGCCGGTCCACATTAGAC 59.533 52.381 1.90 0.00 0.00 2.59
3421 4695 1.612199 GGTTTGCCGGTCCACATTAGA 60.612 52.381 1.90 0.00 0.00 2.10
3422 4696 0.808755 GGTTTGCCGGTCCACATTAG 59.191 55.000 1.90 0.00 0.00 1.73
3423 4697 0.609681 GGGTTTGCCGGTCCACATTA 60.610 55.000 1.90 0.00 34.97 1.90
3424 4698 1.906333 GGGTTTGCCGGTCCACATT 60.906 57.895 1.90 0.00 34.97 2.71
3425 4699 2.282887 GGGTTTGCCGGTCCACAT 60.283 61.111 1.90 0.00 34.97 3.21
3426 4700 2.648613 AATGGGTTTGCCGGTCCACA 62.649 55.000 1.90 0.00 34.97 4.17
3427 4701 1.468506 AAATGGGTTTGCCGGTCCAC 61.469 55.000 1.90 0.00 34.97 4.02
3428 4702 0.112606 TAAATGGGTTTGCCGGTCCA 59.887 50.000 1.90 4.17 34.97 4.02
3429 4703 0.528924 GTAAATGGGTTTGCCGGTCC 59.471 55.000 1.90 0.62 34.97 4.46
3430 4704 1.541379 AGTAAATGGGTTTGCCGGTC 58.459 50.000 1.90 0.00 34.97 4.79
3431 4705 2.224818 TGTAGTAAATGGGTTTGCCGGT 60.225 45.455 1.90 0.00 34.97 5.28
3432 4706 2.438411 TGTAGTAAATGGGTTTGCCGG 58.562 47.619 0.00 0.00 34.97 6.13
3433 4707 4.231439 GTTTGTAGTAAATGGGTTTGCCG 58.769 43.478 0.00 0.00 34.97 5.69
3434 4708 4.039366 TGGTTTGTAGTAAATGGGTTTGCC 59.961 41.667 0.00 0.00 31.18 4.52
3435 4709 5.203060 TGGTTTGTAGTAAATGGGTTTGC 57.797 39.130 0.00 0.00 0.00 3.68


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.