Multiple sequence alignment - TraesCS2B01G533900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G533900 chr2B 100.000 6004 0 0 1 6004 730186679 730192682 0.000000e+00 11088.0
1 TraesCS2B01G533900 chr2B 92.958 71 4 1 810 879 730187340 730187410 1.060000e-17 102.0
2 TraesCS2B01G533900 chr2B 92.958 71 4 1 662 732 730187488 730187557 1.060000e-17 102.0
3 TraesCS2B01G533900 chr2B 92.683 41 2 1 2665 2704 722331595 722331555 2.340000e-04 58.4
4 TraesCS2B01G533900 chr2A 95.320 2222 85 15 2451 4662 733818545 733820757 0.000000e+00 3509.0
5 TraesCS2B01G533900 chr2A 92.656 1103 55 16 4711 5812 733821057 733822134 0.000000e+00 1565.0
6 TraesCS2B01G533900 chr2A 96.947 131 4 0 2307 2437 733818432 733818562 2.820000e-53 220.0
7 TraesCS2B01G533900 chr2A 85.870 92 9 3 5196 5286 142681726 142681814 1.780000e-15 95.3
8 TraesCS2B01G533900 chr2D 89.099 2275 169 38 2451 4663 600297078 600299335 0.000000e+00 2754.0
9 TraesCS2B01G533900 chr2D 94.516 1714 67 15 732 2437 600295401 600297095 0.000000e+00 2619.0
10 TraesCS2B01G533900 chr2D 93.980 897 47 4 4673 5566 600299638 600300530 0.000000e+00 1351.0
11 TraesCS2B01G533900 chr2D 87.703 431 40 7 5578 6004 600300698 600301119 1.940000e-134 490.0
12 TraesCS2B01G533900 chr2D 82.295 610 39 18 230 808 600294973 600295544 1.180000e-126 464.0
13 TraesCS2B01G533900 chr2D 95.964 223 7 2 15 236 600294694 600294915 1.590000e-95 361.0
14 TraesCS2B01G533900 chr2D 94.366 71 3 1 810 879 600295403 600295473 2.290000e-19 108.0
15 TraesCS2B01G533900 chr2D 90.141 71 6 1 662 732 600295475 600295544 2.300000e-14 91.6
16 TraesCS2B01G533900 chr5D 88.608 79 9 0 5203 5281 301126874 301126952 4.950000e-16 97.1
17 TraesCS2B01G533900 chr4D 97.143 35 1 0 5203 5237 138699418 138699452 6.500000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G533900 chr2B 730186679 730192682 6003 False 11088.000000 11088 100.000000 1 6004 1 chr2B.!!$F1 6003
1 TraesCS2B01G533900 chr2A 733818432 733822134 3702 False 1764.666667 3509 94.974333 2307 5812 3 chr2A.!!$F2 3505
2 TraesCS2B01G533900 chr2D 600294694 600301119 6425 False 1029.825000 2754 91.008000 15 6004 8 chr2D.!!$F1 5989

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
419 493 0.249031 AAAAGCTGCTTGTTGACCGC 60.249 50.000 16.73 0.0 0.00 5.68 F
1340 1436 0.467290 GAGATGAGGAGGAGGAGCGT 60.467 60.000 0.00 0.0 0.00 5.07 F
1668 1765 0.906066 AATGATGCATGCTGGCCAAA 59.094 45.000 20.33 0.0 0.00 3.28 F
1992 2089 1.468908 CGCGGCAAAAAGGCATATTGA 60.469 47.619 0.00 0.0 44.47 2.57 F
2197 2297 1.670967 GCAAGACAGCAAGGGAAATGC 60.671 52.381 0.00 0.0 44.15 3.56 F
2441 2541 3.360249 GCATGAGTCTGCTGTTTTGTT 57.640 42.857 0.00 0.0 39.12 2.83 F
4409 4574 1.480137 AGTATGCAGTCAGCCAGAGAC 59.520 52.381 0.00 0.0 44.83 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1460 1556 0.107945 ATTCTCTGTCCTGCTTCGGC 60.108 55.000 0.00 0.0 42.19 5.54 R
2141 2241 0.731417 CTGCAGCATAACAGAGTGGC 59.269 55.000 0.00 0.0 35.90 5.01 R
2693 2798 0.976641 CTCCCTCACCAGCACAAGTA 59.023 55.000 0.00 0.0 0.00 2.24 R
3310 3444 2.132762 CGACGTACTGAACTTGCCTTT 58.867 47.619 0.00 0.0 0.00 3.11 R
4176 4334 4.035558 TCAGTGCACTGTCTGTTCATTTTC 59.964 41.667 38.41 0.0 44.12 2.29 R
4416 4581 1.418637 GGAGGTAGTGGGTTGTTGACA 59.581 52.381 0.00 0.0 0.00 3.58 R
5937 6564 1.136363 CACGGATTTGTGTGCGTAGTG 60.136 52.381 0.00 0.0 44.43 2.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
98 99 2.865551 GTTCAGAGCAGAGCAGCTATTC 59.134 50.000 0.00 0.00 46.75 1.75
149 150 3.608008 GCTGCAGTTTTCTTCTTCCTTCG 60.608 47.826 16.64 0.00 0.00 3.79
191 192 7.337942 GGGTGGCCATCTCTAAATATATCTTTG 59.662 40.741 17.44 0.00 0.00 2.77
226 227 8.357402 ACAACATAGAATTTGTTTAGGTGGTTC 58.643 33.333 0.00 0.00 35.18 3.62
227 228 8.356657 CAACATAGAATTTGTTTAGGTGGTTCA 58.643 33.333 0.00 0.00 35.18 3.18
228 229 7.882179 ACATAGAATTTGTTTAGGTGGTTCAC 58.118 34.615 0.00 0.00 0.00 3.18
235 300 2.270352 TTAGGTGGTTCACTGGCAAG 57.730 50.000 0.00 0.00 34.40 4.01
245 310 3.290948 TCACTGGCAAGTTGTTTACCT 57.709 42.857 4.48 0.00 32.98 3.08
251 316 3.568007 TGGCAAGTTGTTTACCTCATCAC 59.432 43.478 4.48 0.00 0.00 3.06
253 318 4.037446 GGCAAGTTGTTTACCTCATCACAA 59.963 41.667 4.48 0.00 0.00 3.33
255 320 6.039616 GCAAGTTGTTTACCTCATCACAAAA 58.960 36.000 4.48 0.00 31.10 2.44
274 339 7.378461 TCACAAAAATTCAGTCGATTTTGCTAC 59.622 33.333 15.87 0.00 43.22 3.58
414 488 2.099592 TCTGGTCAAAAGCTGCTTGTTG 59.900 45.455 16.73 19.53 0.00 3.33
415 489 2.098614 TGGTCAAAAGCTGCTTGTTGA 58.901 42.857 23.51 23.51 0.00 3.18
416 490 2.159254 TGGTCAAAAGCTGCTTGTTGAC 60.159 45.455 33.19 33.19 45.86 3.18
417 491 2.463876 GTCAAAAGCTGCTTGTTGACC 58.536 47.619 32.25 23.51 42.53 4.02
418 492 1.065401 TCAAAAGCTGCTTGTTGACCG 59.935 47.619 23.51 7.78 0.00 4.79
419 493 0.249031 AAAAGCTGCTTGTTGACCGC 60.249 50.000 16.73 0.00 0.00 5.68
420 494 1.383456 AAAGCTGCTTGTTGACCGCA 61.383 50.000 16.73 0.00 0.00 5.69
422 496 2.253452 CTGCTTGTTGACCGCAGC 59.747 61.111 8.80 0.00 43.75 5.25
423 497 2.203195 TGCTTGTTGACCGCAGCT 60.203 55.556 0.00 0.00 0.00 4.24
424 498 2.180131 CTGCTTGTTGACCGCAGCTC 62.180 60.000 8.80 0.00 43.75 4.09
425 499 2.970974 GCTTGTTGACCGCAGCTCC 61.971 63.158 0.00 0.00 0.00 4.70
426 500 1.302033 CTTGTTGACCGCAGCTCCT 60.302 57.895 0.00 0.00 0.00 3.69
427 501 0.886490 CTTGTTGACCGCAGCTCCTT 60.886 55.000 0.00 0.00 0.00 3.36
428 502 0.884704 TTGTTGACCGCAGCTCCTTC 60.885 55.000 0.00 0.00 0.00 3.46
429 503 2.035442 GTTGACCGCAGCTCCTTCC 61.035 63.158 0.00 0.00 0.00 3.46
430 504 2.217038 TTGACCGCAGCTCCTTCCT 61.217 57.895 0.00 0.00 0.00 3.36
431 505 2.125350 GACCGCAGCTCCTTCCTG 60.125 66.667 0.00 0.00 0.00 3.86
432 506 2.925170 ACCGCAGCTCCTTCCTGT 60.925 61.111 0.00 0.00 32.93 4.00
486 560 0.605083 CTTTCTCCCCTTTGCAAGCC 59.395 55.000 0.00 0.00 0.00 4.35
496 570 3.127376 CCCTTTGCAAGCCATTTTTATGC 59.873 43.478 0.00 0.00 37.52 3.14
544 618 3.222173 AGTGCAACCTGTAACCATCAA 57.778 42.857 0.00 0.00 37.80 2.57
546 620 3.758554 AGTGCAACCTGTAACCATCAATC 59.241 43.478 0.00 0.00 37.80 2.67
551 625 4.402056 ACCTGTAACCATCAATCTACCG 57.598 45.455 0.00 0.00 0.00 4.02
567 641 0.682852 ACCGACCGATTCCTTTCACA 59.317 50.000 0.00 0.00 0.00 3.58
575 649 5.261216 ACCGATTCCTTTCACATTAATGGT 58.739 37.500 19.37 2.87 0.00 3.55
596 682 7.411486 TGGTGAAAGTTTCATTTTCCTGTTA 57.589 32.000 20.72 0.05 42.47 2.41
605 691 7.713942 AGTTTCATTTTCCTGTTAGTAACGTCT 59.286 33.333 8.47 0.00 0.00 4.18
609 695 6.833342 TTTTCCTGTTAGTAACGTCTGAAC 57.167 37.500 8.47 0.00 0.00 3.18
613 699 5.981315 TCCTGTTAGTAACGTCTGAACAAAG 59.019 40.000 8.47 0.00 30.14 2.77
615 701 4.508861 TGTTAGTAACGTCTGAACAAAGGC 59.491 41.667 8.47 0.00 0.00 4.35
616 702 3.188159 AGTAACGTCTGAACAAAGGCA 57.812 42.857 0.00 0.00 0.00 4.75
617 703 3.131396 AGTAACGTCTGAACAAAGGCAG 58.869 45.455 0.00 0.00 0.00 4.85
670 765 4.270245 CCAAAGAAGGCCTTTATGCAAA 57.730 40.909 21.54 0.00 42.88 3.68
675 770 5.806654 AGAAGGCCTTTATGCAAAGAAAA 57.193 34.783 21.54 0.00 43.32 2.29
719 814 7.778382 TGTACTCTAAAGTCTGACAGGCATATA 59.222 37.037 10.23 0.00 36.92 0.86
720 815 7.847711 ACTCTAAAGTCTGACAGGCATATAT 57.152 36.000 10.23 0.00 0.00 0.86
721 816 8.256356 ACTCTAAAGTCTGACAGGCATATATT 57.744 34.615 10.23 0.00 0.00 1.28
722 817 8.364142 ACTCTAAAGTCTGACAGGCATATATTC 58.636 37.037 10.23 0.00 0.00 1.75
723 818 8.484214 TCTAAAGTCTGACAGGCATATATTCT 57.516 34.615 10.23 0.00 0.00 2.40
724 819 8.580720 TCTAAAGTCTGACAGGCATATATTCTC 58.419 37.037 10.23 0.00 0.00 2.87
725 820 6.737720 AAGTCTGACAGGCATATATTCTCA 57.262 37.500 10.23 0.00 0.00 3.27
726 821 6.931790 AGTCTGACAGGCATATATTCTCAT 57.068 37.500 10.23 0.00 0.00 2.90
727 822 6.699366 AGTCTGACAGGCATATATTCTCATG 58.301 40.000 10.23 0.00 0.00 3.07
728 823 5.873712 GTCTGACAGGCATATATTCTCATGG 59.126 44.000 1.12 0.00 0.00 3.66
729 824 5.545335 TCTGACAGGCATATATTCTCATGGT 59.455 40.000 1.81 0.00 0.00 3.55
730 825 6.725834 TCTGACAGGCATATATTCTCATGGTA 59.274 38.462 1.81 0.00 0.00 3.25
731 826 6.701340 TGACAGGCATATATTCTCATGGTAC 58.299 40.000 0.00 0.00 0.00 3.34
732 827 6.054860 ACAGGCATATATTCTCATGGTACC 57.945 41.667 4.43 4.43 0.00 3.34
733 828 5.787494 ACAGGCATATATTCTCATGGTACCT 59.213 40.000 14.36 0.00 0.00 3.08
734 829 6.273260 ACAGGCATATATTCTCATGGTACCTT 59.727 38.462 14.36 3.50 0.00 3.50
735 830 7.170965 CAGGCATATATTCTCATGGTACCTTT 58.829 38.462 14.36 0.00 0.00 3.11
736 831 8.321353 CAGGCATATATTCTCATGGTACCTTTA 58.679 37.037 14.36 0.00 0.00 1.85
737 832 9.062367 AGGCATATATTCTCATGGTACCTTTAT 57.938 33.333 14.36 4.08 0.00 1.40
738 833 9.113838 GGCATATATTCTCATGGTACCTTTATG 57.886 37.037 14.36 8.89 0.00 1.90
739 834 8.616076 GCATATATTCTCATGGTACCTTTATGC 58.384 37.037 14.36 15.68 32.93 3.14
740 835 9.671279 CATATATTCTCATGGTACCTTTATGCA 57.329 33.333 14.36 0.00 0.00 3.96
742 837 8.995027 ATATTCTCATGGTACCTTTATGCAAA 57.005 30.769 14.36 6.73 0.00 3.68
743 838 6.757897 TTCTCATGGTACCTTTATGCAAAG 57.242 37.500 14.36 2.95 40.80 2.77
758 853 9.173939 CTTTATGCAAAGGAAATTTAGATAGCG 57.826 33.333 0.00 0.00 37.99 4.26
759 854 6.699575 ATGCAAAGGAAATTTAGATAGCGT 57.300 33.333 0.00 0.00 0.00 5.07
760 855 6.509418 TGCAAAGGAAATTTAGATAGCGTT 57.491 33.333 0.00 0.00 0.00 4.84
761 856 6.321717 TGCAAAGGAAATTTAGATAGCGTTG 58.678 36.000 0.00 0.00 0.00 4.10
762 857 6.072175 TGCAAAGGAAATTTAGATAGCGTTGT 60.072 34.615 0.00 0.00 0.00 3.32
763 858 6.806739 GCAAAGGAAATTTAGATAGCGTTGTT 59.193 34.615 0.00 0.00 0.00 2.83
764 859 7.201350 GCAAAGGAAATTTAGATAGCGTTGTTG 60.201 37.037 0.00 0.00 0.00 3.33
765 860 7.448748 AAGGAAATTTAGATAGCGTTGTTGT 57.551 32.000 0.00 0.00 0.00 3.32
766 861 6.842163 AGGAAATTTAGATAGCGTTGTTGTG 58.158 36.000 0.00 0.00 0.00 3.33
767 862 6.430000 AGGAAATTTAGATAGCGTTGTTGTGT 59.570 34.615 0.00 0.00 0.00 3.72
768 863 7.604927 AGGAAATTTAGATAGCGTTGTTGTGTA 59.395 33.333 0.00 0.00 0.00 2.90
769 864 7.691050 GGAAATTTAGATAGCGTTGTTGTGTAC 59.309 37.037 0.00 0.00 0.00 2.90
770 865 7.900782 AATTTAGATAGCGTTGTTGTGTACT 57.099 32.000 0.00 0.00 0.00 2.73
771 866 6.939551 TTTAGATAGCGTTGTTGTGTACTC 57.060 37.500 0.00 0.00 0.00 2.59
772 867 4.785511 AGATAGCGTTGTTGTGTACTCT 57.214 40.909 0.00 0.00 0.00 3.24
773 868 5.892160 AGATAGCGTTGTTGTGTACTCTA 57.108 39.130 0.00 0.00 0.00 2.43
774 869 6.263516 AGATAGCGTTGTTGTGTACTCTAA 57.736 37.500 0.00 0.00 0.00 2.10
775 870 6.684686 AGATAGCGTTGTTGTGTACTCTAAA 58.315 36.000 0.00 0.00 0.00 1.85
776 871 6.807230 AGATAGCGTTGTTGTGTACTCTAAAG 59.193 38.462 0.00 0.00 0.00 1.85
777 872 4.690122 AGCGTTGTTGTGTACTCTAAAGT 58.310 39.130 0.00 0.00 39.66 2.66
778 873 4.743644 AGCGTTGTTGTGTACTCTAAAGTC 59.256 41.667 0.00 0.00 36.92 3.01
779 874 4.743644 GCGTTGTTGTGTACTCTAAAGTCT 59.256 41.667 0.00 0.00 36.92 3.24
780 875 5.332355 GCGTTGTTGTGTACTCTAAAGTCTG 60.332 44.000 0.00 0.00 36.92 3.51
781 876 5.975344 CGTTGTTGTGTACTCTAAAGTCTGA 59.025 40.000 0.00 0.00 36.92 3.27
782 877 6.074994 CGTTGTTGTGTACTCTAAAGTCTGAC 60.075 42.308 0.00 0.00 36.92 3.51
783 878 6.459670 TGTTGTGTACTCTAAAGTCTGACA 57.540 37.500 10.88 0.00 36.92 3.58
784 879 6.869695 TGTTGTGTACTCTAAAGTCTGACAA 58.130 36.000 10.88 0.00 36.92 3.18
785 880 6.978659 TGTTGTGTACTCTAAAGTCTGACAAG 59.021 38.462 10.88 4.70 36.92 3.16
786 881 5.529791 TGTGTACTCTAAAGTCTGACAAGC 58.470 41.667 10.88 0.00 36.92 4.01
787 882 5.068591 TGTGTACTCTAAAGTCTGACAAGCA 59.931 40.000 10.88 0.00 36.92 3.91
788 883 5.402867 GTGTACTCTAAAGTCTGACAAGCAC 59.597 44.000 10.88 4.62 36.92 4.40
789 884 4.946478 ACTCTAAAGTCTGACAAGCACT 57.054 40.909 10.88 0.00 0.00 4.40
790 885 4.877282 ACTCTAAAGTCTGACAAGCACTC 58.123 43.478 10.88 0.00 0.00 3.51
791 886 4.342378 ACTCTAAAGTCTGACAAGCACTCA 59.658 41.667 10.88 0.00 0.00 3.41
792 887 5.011533 ACTCTAAAGTCTGACAAGCACTCAT 59.988 40.000 10.88 0.00 0.00 2.90
793 888 6.209589 ACTCTAAAGTCTGACAAGCACTCATA 59.790 38.462 10.88 0.00 0.00 2.15
794 889 7.093552 ACTCTAAAGTCTGACAAGCACTCATAT 60.094 37.037 10.88 0.00 0.00 1.78
866 961 7.778382 TGTACTCTAAAGTCTGACAGGCATATA 59.222 37.037 10.23 0.00 36.92 0.86
905 1000 3.885901 CTCGATGTCTACTCCATTCCAGA 59.114 47.826 0.00 0.00 0.00 3.86
928 1023 4.080687 TGCATTTGTGTGGATGAAGATGA 58.919 39.130 0.00 0.00 0.00 2.92
933 1028 7.629008 GCATTTGTGTGGATGAAGATGACAATA 60.629 37.037 0.00 0.00 0.00 1.90
934 1029 7.943079 TTTGTGTGGATGAAGATGACAATAT 57.057 32.000 0.00 0.00 0.00 1.28
935 1030 9.631257 ATTTGTGTGGATGAAGATGACAATATA 57.369 29.630 0.00 0.00 0.00 0.86
936 1031 9.460019 TTTGTGTGGATGAAGATGACAATATAA 57.540 29.630 0.00 0.00 0.00 0.98
937 1032 9.631257 TTGTGTGGATGAAGATGACAATATAAT 57.369 29.630 0.00 0.00 0.00 1.28
975 1070 1.611977 GAAGCCACCCAACCTGTAAAC 59.388 52.381 0.00 0.00 0.00 2.01
983 1078 4.039973 CACCCAACCTGTAAACTCAGTCTA 59.960 45.833 0.00 0.00 34.02 2.59
1065 1161 4.761227 TGTCTTGCATTGCTGATCTGTTTA 59.239 37.500 10.49 0.00 0.00 2.01
1085 1181 9.525007 CTGTTTACTAATTTGTAATGACGTGTC 57.475 33.333 12.27 0.00 33.16 3.67
1139 1235 3.068307 CGGAGGGTCTGTTCTTATTCGAT 59.932 47.826 0.00 0.00 0.00 3.59
1337 1433 2.586425 GTCAGAGATGAGGAGGAGGAG 58.414 57.143 0.00 0.00 0.00 3.69
1340 1436 0.467290 GAGATGAGGAGGAGGAGCGT 60.467 60.000 0.00 0.00 0.00 5.07
1349 1445 2.665185 GAGGAGCGTGCCGTGTTT 60.665 61.111 0.00 0.00 0.00 2.83
1388 1484 3.423539 TTGAGCAGGAACTTGCTATGT 57.576 42.857 11.13 0.00 41.40 2.29
1481 1578 2.418746 GCCGAAGCAGGACAGAGAATTA 60.419 50.000 0.00 0.00 39.53 1.40
1483 1580 3.190874 CGAAGCAGGACAGAGAATTACC 58.809 50.000 0.00 0.00 0.00 2.85
1486 1583 3.177228 AGCAGGACAGAGAATTACCTGT 58.823 45.455 10.84 10.84 46.55 4.00
1490 1587 5.938125 GCAGGACAGAGAATTACCTGTTTTA 59.062 40.000 11.94 0.00 46.55 1.52
1491 1588 6.430000 GCAGGACAGAGAATTACCTGTTTTAA 59.570 38.462 11.94 0.00 46.55 1.52
1493 1590 9.014297 CAGGACAGAGAATTACCTGTTTTAATT 57.986 33.333 11.94 0.00 43.02 1.40
1522 1619 5.147767 ACAAGTCTAAAATTTCCCTGCCTT 58.852 37.500 0.00 0.00 0.00 4.35
1654 1751 2.167281 CGAGGTGAGTGAGACCAATGAT 59.833 50.000 0.00 0.00 35.76 2.45
1666 1763 1.681486 CCAATGATGCATGCTGGCCA 61.681 55.000 20.33 4.71 0.00 5.36
1668 1765 0.906066 AATGATGCATGCTGGCCAAA 59.094 45.000 20.33 0.00 0.00 3.28
1673 1770 1.849977 TGCATGCTGGCCAAAAGATA 58.150 45.000 20.33 0.00 0.00 1.98
1732 1829 8.109634 ACCTCTTCTCAACAATATAACCAACAT 58.890 33.333 0.00 0.00 0.00 2.71
1801 1898 2.754002 AGACGAGGTGCTTTCCTACTAC 59.246 50.000 0.00 0.00 38.02 2.73
1870 1967 5.326200 TCGAGAGATTAGGGAAAGTTGAC 57.674 43.478 0.00 0.00 33.31 3.18
1894 1991 7.330262 ACCCAAATAAATTGATGAACATCACC 58.670 34.615 15.68 0.00 46.49 4.02
1897 1994 7.818446 CCAAATAAATTGATGAACATCACCACA 59.182 33.333 15.68 3.64 46.49 4.17
1918 2015 4.081642 ACAGTTGACCGCTACATCAAGTAT 60.082 41.667 0.00 0.00 36.55 2.12
1992 2089 1.468908 CGCGGCAAAAAGGCATATTGA 60.469 47.619 0.00 0.00 44.47 2.57
2041 2138 2.026262 AGGCGTGGTATGATGGTTCTTT 60.026 45.455 0.00 0.00 0.00 2.52
2061 2161 6.054941 TCTTTCCATATTCGCAGCATCTTAA 58.945 36.000 0.00 0.00 0.00 1.85
2067 2167 6.090088 CCATATTCGCAGCATCTTAACTCTAC 59.910 42.308 0.00 0.00 0.00 2.59
2085 2185 7.742556 ACTCTACGTAGAAGACTAACTTTGT 57.257 36.000 24.66 12.25 39.13 2.83
2089 2189 8.072567 TCTACGTAGAAGACTAACTTTGTCAAC 58.927 37.037 22.74 0.69 39.13 3.18
2125 2225 6.190954 ACCCAAAATAGTTCGCATAAAGAC 57.809 37.500 0.00 0.00 0.00 3.01
2126 2226 5.944007 ACCCAAAATAGTTCGCATAAAGACT 59.056 36.000 0.00 0.00 0.00 3.24
2127 2227 6.128007 ACCCAAAATAGTTCGCATAAAGACTG 60.128 38.462 0.00 0.00 0.00 3.51
2129 2229 6.314018 CAAAATAGTTCGCATAAAGACTGCA 58.686 36.000 0.00 0.00 39.64 4.41
2134 2234 3.177997 TCGCATAAAGACTGCATGCTA 57.822 42.857 20.33 1.47 42.28 3.49
2140 2240 5.684626 GCATAAAGACTGCATGCTAACATTC 59.315 40.000 20.33 2.05 41.44 2.67
2141 2241 4.346734 AAAGACTGCATGCTAACATTCG 57.653 40.909 20.33 0.00 32.87 3.34
2149 2249 1.725641 TGCTAACATTCGCCACTCTG 58.274 50.000 0.00 0.00 0.00 3.35
2181 2281 3.633986 AGGGTTTCAAGAACTTCAGCAAG 59.366 43.478 0.00 0.00 35.50 4.01
2197 2297 1.670967 GCAAGACAGCAAGGGAAATGC 60.671 52.381 0.00 0.00 44.15 3.56
2211 2311 5.128919 AGGGAAATGCTAACTAGAATGCAG 58.871 41.667 0.00 0.00 38.87 4.41
2242 2342 8.783660 AGACAGTGATTATTATCCTGAGGTAA 57.216 34.615 13.61 0.00 35.15 2.85
2243 2343 9.386122 AGACAGTGATTATTATCCTGAGGTAAT 57.614 33.333 13.61 5.12 35.15 1.89
2246 2346 9.877178 CAGTGATTATTATCCTGAGGTAATACC 57.123 37.037 0.07 0.07 38.99 2.73
2335 2435 3.750130 AGACACTGCATCAGATGTTTGTC 59.250 43.478 21.89 21.89 36.51 3.18
2422 2522 5.174395 ACAGTCTCAAAGATACATGTGAGC 58.826 41.667 9.11 2.45 37.90 4.26
2423 2523 5.173664 CAGTCTCAAAGATACATGTGAGCA 58.826 41.667 9.11 0.00 37.90 4.26
2424 2524 5.816258 CAGTCTCAAAGATACATGTGAGCAT 59.184 40.000 9.11 0.00 37.90 3.79
2441 2541 3.360249 GCATGAGTCTGCTGTTTTGTT 57.640 42.857 0.00 0.00 39.12 2.83
2442 2542 3.709987 GCATGAGTCTGCTGTTTTGTTT 58.290 40.909 0.00 0.00 39.12 2.83
2443 2543 4.114794 GCATGAGTCTGCTGTTTTGTTTT 58.885 39.130 0.00 0.00 39.12 2.43
2444 2544 4.567959 GCATGAGTCTGCTGTTTTGTTTTT 59.432 37.500 0.00 0.00 39.12 1.94
2589 2689 5.009010 AGGTGCACTTCTCATTTACAACAAG 59.991 40.000 17.98 0.00 0.00 3.16
2590 2690 4.676924 GTGCACTTCTCATTTACAACAAGC 59.323 41.667 10.32 0.00 0.00 4.01
2611 2713 9.407380 ACAAGCTGGTATAATGTTATTGATCAA 57.593 29.630 11.26 11.26 0.00 2.57
2693 2798 4.202346 CCTGAATTTTTGGGTGGAACATGT 60.202 41.667 0.00 0.00 44.52 3.21
2804 2911 4.751600 TCTTGCATTATATGTGCTTCTCCG 59.248 41.667 13.79 0.00 42.92 4.63
2806 2913 5.208463 TGCATTATATGTGCTTCTCCGTA 57.792 39.130 13.79 0.00 42.92 4.02
2822 2929 5.120399 TCTCCGTAGTTGCTTTTCTGAAAA 58.880 37.500 14.31 14.31 0.00 2.29
2823 2930 5.763204 TCTCCGTAGTTGCTTTTCTGAAAAT 59.237 36.000 15.30 3.94 0.00 1.82
3051 3182 5.065914 AGGATATTACTGCACGCAATTCAT 58.934 37.500 0.00 0.00 0.00 2.57
3100 3232 9.699410 ACCACTAAATTTGAAATCCTGATATGA 57.301 29.630 0.00 0.00 0.00 2.15
3162 3296 4.186856 TCAGCATCACGTCTTTCATACA 57.813 40.909 0.00 0.00 0.00 2.29
3163 3297 4.758688 TCAGCATCACGTCTTTCATACAT 58.241 39.130 0.00 0.00 0.00 2.29
3164 3298 4.567959 TCAGCATCACGTCTTTCATACATG 59.432 41.667 0.00 0.00 0.00 3.21
3165 3299 4.567959 CAGCATCACGTCTTTCATACATGA 59.432 41.667 0.00 0.00 34.44 3.07
3310 3444 7.067008 GGTTCATTTGCTAGGCTACATCTTTTA 59.933 37.037 0.00 0.00 0.00 1.52
3327 3461 6.295039 TCTTTTAAAGGCAAGTTCAGTACG 57.705 37.500 4.77 0.00 0.00 3.67
3533 3668 8.032952 TCTTTGCAGTACTGATATTGAGTTTG 57.967 34.615 27.08 0.00 0.00 2.93
3624 3759 4.579340 CAGCAATGTTCATCTTAGCATCCT 59.421 41.667 0.00 0.00 0.00 3.24
3641 3776 5.934043 AGCATCCTTAACAATTTGCCTTTTC 59.066 36.000 0.00 0.00 0.00 2.29
3796 3932 3.392616 AGAAGTGAGCTTTCCTCCTGAAA 59.607 43.478 0.00 0.00 40.64 2.69
3856 4004 9.981460 ACTGAATCTCCTAAATTTTTACCTCAT 57.019 29.630 0.00 0.00 0.00 2.90
4196 4354 4.291540 TGAAAATGAACAGACAGTGCAC 57.708 40.909 9.40 9.40 39.05 4.57
4214 4376 6.634436 CAGTGCACTGAACTAAGAATTTTGAC 59.366 38.462 38.12 0.00 46.59 3.18
4409 4574 1.480137 AGTATGCAGTCAGCCAGAGAC 59.520 52.381 0.00 0.00 44.83 3.36
4416 4581 1.620819 AGTCAGCCAGAGACAACGATT 59.379 47.619 0.00 0.00 38.46 3.34
4468 4633 4.536090 AGTTTGAACCCATCTCTGGTGATA 59.464 41.667 0.00 0.00 41.37 2.15
4530 4695 1.806542 GTCATTGAGCGCCTTCAGAAA 59.193 47.619 2.29 0.00 0.00 2.52
4663 4828 5.365619 TCGAAAGGACAAAGAAAGTAAGCT 58.634 37.500 0.00 0.00 0.00 3.74
4666 4831 7.496591 TCGAAAGGACAAAGAAAGTAAGCTTTA 59.503 33.333 3.20 0.00 44.25 1.85
4667 4832 8.290325 CGAAAGGACAAAGAAAGTAAGCTTTAT 58.710 33.333 3.20 0.00 44.25 1.40
4668 4833 9.613957 GAAAGGACAAAGAAAGTAAGCTTTATC 57.386 33.333 3.20 0.00 44.25 1.75
4670 4835 8.926092 AGGACAAAGAAAGTAAGCTTTATCTT 57.074 30.769 3.20 7.06 44.25 2.40
4671 4836 9.355916 AGGACAAAGAAAGTAAGCTTTATCTTT 57.644 29.630 3.20 13.17 44.25 2.52
4776 5240 5.762179 ATATATCTTCCCGCCAATCTCAA 57.238 39.130 0.00 0.00 0.00 3.02
4944 5409 1.341285 TGGCTTATCACTGCATTGCCT 60.341 47.619 6.12 0.00 39.57 4.75
5103 5569 4.188462 CGGGACAAGTTATGCATAAGACA 58.812 43.478 19.41 0.00 0.00 3.41
5276 5743 9.887406 CAATAAAACGTCCTACATTTTGTTACT 57.113 29.630 0.00 0.00 29.12 2.24
5473 5940 3.356529 AGCCATTACAAGACCTTCCTG 57.643 47.619 0.00 0.00 0.00 3.86
5513 5980 4.161565 ACAAGCAAATCATTCTGCATCCAT 59.838 37.500 7.13 0.00 41.17 3.41
5537 6004 0.040067 GGCGCTTGTTGGAACTCAAG 60.040 55.000 7.64 0.00 41.12 3.02
5566 6033 3.056328 GCAGCGGTTGGGAAGTCC 61.056 66.667 0.00 0.00 0.00 3.85
5574 6200 1.559682 GGTTGGGAAGTCCTGCAGATA 59.440 52.381 17.39 0.00 36.20 1.98
5575 6201 2.026262 GGTTGGGAAGTCCTGCAGATAA 60.026 50.000 17.39 0.00 36.20 1.75
5576 6202 3.274288 GTTGGGAAGTCCTGCAGATAAG 58.726 50.000 17.39 0.00 36.20 1.73
5611 6237 3.245797 CAATGGTCTGTATAGATCGCCG 58.754 50.000 0.00 0.00 36.82 6.46
5617 6243 0.250424 TGTATAGATCGCCGTCCCGA 60.250 55.000 0.00 0.00 41.98 5.14
5649 6275 4.467769 CACATTGGAGGGCAAGAAGATAT 58.532 43.478 0.00 0.00 0.00 1.63
5651 6277 5.361857 CACATTGGAGGGCAAGAAGATATTT 59.638 40.000 0.00 0.00 0.00 1.40
5691 6317 4.137543 ACACAAATCTCACAAGTTCCCTC 58.862 43.478 0.00 0.00 0.00 4.30
5694 6320 4.136796 CAAATCTCACAAGTTCCCTCACA 58.863 43.478 0.00 0.00 0.00 3.58
5708 6334 1.138859 CCTCACAGAACCGCATATGGA 59.861 52.381 4.56 0.00 0.00 3.41
5723 6349 4.156190 GCATATGGATGAGCTTCATTGGAG 59.844 45.833 4.56 0.00 37.20 3.86
5724 6350 3.947612 ATGGATGAGCTTCATTGGAGT 57.052 42.857 0.00 0.00 37.20 3.85
5725 6351 3.726557 TGGATGAGCTTCATTGGAGTT 57.273 42.857 0.00 0.00 37.20 3.01
5726 6352 3.349927 TGGATGAGCTTCATTGGAGTTG 58.650 45.455 0.00 0.00 37.20 3.16
5729 6355 2.783135 TGAGCTTCATTGGAGTTGGAC 58.217 47.619 0.00 0.00 0.00 4.02
5730 6356 2.106338 TGAGCTTCATTGGAGTTGGACA 59.894 45.455 0.00 0.00 0.00 4.02
5731 6357 2.746362 GAGCTTCATTGGAGTTGGACAG 59.254 50.000 0.00 0.00 0.00 3.51
5733 6359 2.746362 GCTTCATTGGAGTTGGACAGAG 59.254 50.000 0.00 0.00 0.00 3.35
5734 6360 3.557898 GCTTCATTGGAGTTGGACAGAGA 60.558 47.826 0.00 0.00 0.00 3.10
5735 6361 3.969287 TCATTGGAGTTGGACAGAGAG 57.031 47.619 0.00 0.00 0.00 3.20
5736 6362 2.568956 TCATTGGAGTTGGACAGAGAGG 59.431 50.000 0.00 0.00 0.00 3.69
5737 6363 2.398754 TTGGAGTTGGACAGAGAGGA 57.601 50.000 0.00 0.00 0.00 3.71
5738 6364 2.398754 TGGAGTTGGACAGAGAGGAA 57.601 50.000 0.00 0.00 0.00 3.36
5739 6365 1.971357 TGGAGTTGGACAGAGAGGAAC 59.029 52.381 0.00 0.00 0.00 3.62
5741 6367 3.181422 TGGAGTTGGACAGAGAGGAACTA 60.181 47.826 0.00 0.00 41.55 2.24
5742 6368 3.445805 GGAGTTGGACAGAGAGGAACTAG 59.554 52.174 0.00 0.00 41.55 2.57
5759 6385 8.709272 AGGAACTAGTAGAGAACTAAAACACT 57.291 34.615 3.59 0.00 40.21 3.55
5815 6441 1.141019 CCCGACGATCGACACCATT 59.859 57.895 24.34 0.00 43.74 3.16
5825 6451 2.672714 TCGACACCATTCTTTGACTCG 58.327 47.619 0.00 0.00 0.00 4.18
5830 6456 4.389374 ACACCATTCTTTGACTCGTTGAT 58.611 39.130 0.00 0.00 0.00 2.57
5835 6461 5.122869 CCATTCTTTGACTCGTTGATGTCAT 59.877 40.000 0.00 0.00 41.93 3.06
5847 6473 4.621510 CGTTGATGTCATTGAGAGGAAGGA 60.622 45.833 0.00 0.00 0.00 3.36
5862 6488 0.541863 AAGGACATCGACATGGGGAC 59.458 55.000 0.00 0.00 33.82 4.46
5875 6501 2.224159 GGGGACAGCTGAGGAACCA 61.224 63.158 23.35 0.00 0.00 3.67
5890 6516 4.352009 AGGAACCATTATTCACATTGCCA 58.648 39.130 0.00 0.00 0.00 4.92
5896 6522 4.426416 CATTATTCACATTGCCACCACTG 58.574 43.478 0.00 0.00 0.00 3.66
5898 6524 0.467844 TTCACATTGCCACCACTGCT 60.468 50.000 0.00 0.00 0.00 4.24
5909 6535 3.214328 CCACCACTGCTTAAACTTCACT 58.786 45.455 0.00 0.00 0.00 3.41
5910 6536 4.385825 CCACCACTGCTTAAACTTCACTA 58.614 43.478 0.00 0.00 0.00 2.74
5923 6550 0.669619 TTCACTACGACAAGCCGACA 59.330 50.000 0.00 0.00 0.00 4.35
5925 6552 1.271379 TCACTACGACAAGCCGACAAT 59.729 47.619 0.00 0.00 0.00 2.71
5929 6556 1.148310 ACGACAAGCCGACAATGAAG 58.852 50.000 0.00 0.00 0.00 3.02
5937 6564 1.464997 GCCGACAATGAAGTTGGAGAC 59.535 52.381 4.58 0.00 44.46 3.36
5966 6596 0.037734 ACAAATCCGTGGTTCCCCTC 59.962 55.000 0.00 0.00 0.00 4.30
5974 6604 3.015753 GGTTCCCCTCCCCTCACC 61.016 72.222 0.00 0.00 0.00 4.02
5975 6605 3.015753 GTTCCCCTCCCCTCACCC 61.016 72.222 0.00 0.00 0.00 4.61
5987 6617 0.682852 CCTCACCCCGTTGTAGAACA 59.317 55.000 3.42 0.00 31.78 3.18
5993 6623 3.756434 CACCCCGTTGTAGAACATCATTT 59.244 43.478 3.42 0.00 31.78 2.32
5995 6625 4.939439 ACCCCGTTGTAGAACATCATTTAC 59.061 41.667 3.42 0.00 31.78 2.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.153645 TCGACGTCTAAAGGTAGCACA 58.846 47.619 14.70 0.00 0.00 4.57
1 2 2.907910 TCGACGTCTAAAGGTAGCAC 57.092 50.000 14.70 0.00 0.00 4.40
2 3 3.192001 ACAATCGACGTCTAAAGGTAGCA 59.808 43.478 14.70 0.00 0.00 3.49
3 4 3.767278 ACAATCGACGTCTAAAGGTAGC 58.233 45.455 14.70 0.00 0.00 3.58
4 5 5.396484 TGAACAATCGACGTCTAAAGGTAG 58.604 41.667 14.70 0.00 0.00 3.18
5 6 5.048504 ACTGAACAATCGACGTCTAAAGGTA 60.049 40.000 14.70 0.00 0.00 3.08
6 7 4.235360 CTGAACAATCGACGTCTAAAGGT 58.765 43.478 14.70 2.57 0.00 3.50
7 8 4.235360 ACTGAACAATCGACGTCTAAAGG 58.765 43.478 14.70 1.92 0.00 3.11
8 9 4.323868 GGACTGAACAATCGACGTCTAAAG 59.676 45.833 14.70 3.77 0.00 1.85
9 10 4.232221 GGACTGAACAATCGACGTCTAAA 58.768 43.478 14.70 0.00 0.00 1.85
10 11 3.668757 CGGACTGAACAATCGACGTCTAA 60.669 47.826 14.70 1.61 0.00 2.10
11 12 2.159612 CGGACTGAACAATCGACGTCTA 60.160 50.000 14.70 2.39 0.00 2.59
12 13 1.401148 CGGACTGAACAATCGACGTCT 60.401 52.381 14.70 0.00 0.00 4.18
13 14 0.982673 CGGACTGAACAATCGACGTC 59.017 55.000 5.18 5.18 0.00 4.34
98 99 2.119886 TGGAAGCCCCAACAAAACG 58.880 52.632 0.00 0.00 43.29 3.60
169 170 7.391554 TGCACAAAGATATATTTAGAGATGGCC 59.608 37.037 0.00 0.00 0.00 5.36
203 204 7.724061 AGTGAACCACCTAAACAAATTCTATGT 59.276 33.333 0.00 0.00 34.49 2.29
220 221 1.102978 ACAACTTGCCAGTGAACCAC 58.897 50.000 0.00 0.00 31.60 4.16
226 227 2.948979 TGAGGTAAACAACTTGCCAGTG 59.051 45.455 0.00 0.00 42.06 3.66
227 228 3.290948 TGAGGTAAACAACTTGCCAGT 57.709 42.857 0.00 0.00 42.06 4.00
228 229 3.820467 TGATGAGGTAAACAACTTGCCAG 59.180 43.478 0.00 0.00 42.06 4.85
235 300 8.641499 TGAATTTTTGTGATGAGGTAAACAAC 57.359 30.769 0.00 0.00 32.54 3.32
245 310 7.096106 GCAAAATCGACTGAATTTTTGTGATGA 60.096 33.333 16.67 0.00 36.84 2.92
251 316 6.183359 CCGTAGCAAAATCGACTGAATTTTTG 60.183 38.462 12.94 12.94 37.24 2.44
253 318 5.180492 TCCGTAGCAAAATCGACTGAATTTT 59.820 36.000 0.00 0.00 0.00 1.82
255 320 4.250464 TCCGTAGCAAAATCGACTGAATT 58.750 39.130 0.00 0.00 0.00 2.17
299 364 9.887406 CCATTGACTACGTTTTTAACAAGTAAT 57.113 29.630 0.00 0.00 30.15 1.89
300 365 9.107177 TCCATTGACTACGTTTTTAACAAGTAA 57.893 29.630 0.00 0.00 30.15 2.24
301 366 8.659925 TCCATTGACTACGTTTTTAACAAGTA 57.340 30.769 0.00 0.00 30.15 2.24
378 452 8.463930 TTTTGACCAGAGTTAATCACTGAAAT 57.536 30.769 0.00 0.00 37.00 2.17
383 457 5.471456 CAGCTTTTGACCAGAGTTAATCACT 59.529 40.000 0.00 0.00 39.07 3.41
414 488 1.605058 TACAGGAAGGAGCTGCGGTC 61.605 60.000 0.00 1.18 0.00 4.79
415 489 1.192146 TTACAGGAAGGAGCTGCGGT 61.192 55.000 0.00 0.00 0.00 5.68
416 490 0.741221 GTTACAGGAAGGAGCTGCGG 60.741 60.000 0.00 0.00 0.00 5.69
417 491 0.741221 GGTTACAGGAAGGAGCTGCG 60.741 60.000 0.00 0.00 0.00 5.18
418 492 0.615850 AGGTTACAGGAAGGAGCTGC 59.384 55.000 0.00 0.00 0.00 5.25
419 493 1.902508 TCAGGTTACAGGAAGGAGCTG 59.097 52.381 0.00 0.00 38.58 4.24
420 494 1.903183 GTCAGGTTACAGGAAGGAGCT 59.097 52.381 0.00 0.00 0.00 4.09
421 495 1.623811 TGTCAGGTTACAGGAAGGAGC 59.376 52.381 0.00 0.00 0.00 4.70
422 496 3.056465 GTCTGTCAGGTTACAGGAAGGAG 60.056 52.174 0.00 0.00 45.69 3.69
423 497 2.897969 GTCTGTCAGGTTACAGGAAGGA 59.102 50.000 0.00 0.00 45.69 3.36
424 498 2.632996 TGTCTGTCAGGTTACAGGAAGG 59.367 50.000 0.00 0.00 45.69 3.46
425 499 4.248859 CATGTCTGTCAGGTTACAGGAAG 58.751 47.826 0.00 0.00 45.69 3.46
426 500 3.646162 ACATGTCTGTCAGGTTACAGGAA 59.354 43.478 10.68 0.00 45.69 3.36
427 501 3.006859 CACATGTCTGTCAGGTTACAGGA 59.993 47.826 10.68 0.00 45.69 3.86
428 502 3.329386 CACATGTCTGTCAGGTTACAGG 58.671 50.000 0.00 1.80 45.69 4.00
429 503 2.738846 GCACATGTCTGTCAGGTTACAG 59.261 50.000 0.00 0.00 46.78 2.74
430 504 2.103941 TGCACATGTCTGTCAGGTTACA 59.896 45.455 0.00 0.00 39.11 2.41
431 505 2.480419 GTGCACATGTCTGTCAGGTTAC 59.520 50.000 13.17 0.00 39.11 2.50
432 506 2.103941 TGTGCACATGTCTGTCAGGTTA 59.896 45.455 17.42 0.00 39.11 2.85
511 585 6.715280 ACAGGTTGCACTACTAGTACTACTA 58.285 40.000 0.00 0.00 0.00 1.82
512 586 5.568392 ACAGGTTGCACTACTAGTACTACT 58.432 41.667 0.00 0.00 0.00 2.57
513 587 5.893897 ACAGGTTGCACTACTAGTACTAC 57.106 43.478 0.00 0.00 0.00 2.73
514 588 6.375455 GGTTACAGGTTGCACTACTAGTACTA 59.625 42.308 1.89 1.89 0.00 1.82
515 589 5.184671 GGTTACAGGTTGCACTACTAGTACT 59.815 44.000 0.00 0.00 0.00 2.73
516 590 5.047802 TGGTTACAGGTTGCACTACTAGTAC 60.048 44.000 0.00 0.00 0.00 2.73
517 591 5.078949 TGGTTACAGGTTGCACTACTAGTA 58.921 41.667 1.89 1.89 0.00 1.82
518 592 3.899360 TGGTTACAGGTTGCACTACTAGT 59.101 43.478 0.00 0.00 0.00 2.57
519 593 4.530710 TGGTTACAGGTTGCACTACTAG 57.469 45.455 0.00 0.00 0.00 2.57
520 594 4.528987 TGATGGTTACAGGTTGCACTACTA 59.471 41.667 0.00 0.00 0.00 1.82
521 595 3.326588 TGATGGTTACAGGTTGCACTACT 59.673 43.478 0.00 0.00 0.00 2.57
522 596 3.670625 TGATGGTTACAGGTTGCACTAC 58.329 45.455 0.00 0.00 0.00 2.73
523 597 4.359434 TTGATGGTTACAGGTTGCACTA 57.641 40.909 0.00 0.00 0.00 2.74
524 598 2.949177 TGATGGTTACAGGTTGCACT 57.051 45.000 0.00 0.00 0.00 4.40
525 599 3.758554 AGATTGATGGTTACAGGTTGCAC 59.241 43.478 0.00 0.00 0.00 4.57
526 600 4.032960 AGATTGATGGTTACAGGTTGCA 57.967 40.909 0.00 0.00 0.00 4.08
527 601 4.335594 GGTAGATTGATGGTTACAGGTTGC 59.664 45.833 0.00 0.00 0.00 4.17
544 618 3.028850 TGAAAGGAATCGGTCGGTAGAT 58.971 45.455 0.00 0.00 0.00 1.98
546 620 2.094390 TGTGAAAGGAATCGGTCGGTAG 60.094 50.000 0.00 0.00 0.00 3.18
551 625 5.357032 ACCATTAATGTGAAAGGAATCGGTC 59.643 40.000 14.25 0.00 0.00 4.79
567 641 9.492973 CAGGAAAATGAAACTTTCACCATTAAT 57.507 29.630 6.35 0.00 43.48 1.40
578 652 8.217131 ACGTTACTAACAGGAAAATGAAACTT 57.783 30.769 0.00 0.00 0.00 2.66
579 653 7.713942 AGACGTTACTAACAGGAAAATGAAACT 59.286 33.333 0.00 0.00 0.00 2.66
585 659 6.987992 TGTTCAGACGTTACTAACAGGAAAAT 59.012 34.615 0.00 0.00 0.00 1.82
596 682 3.131396 CTGCCTTTGTTCAGACGTTACT 58.869 45.455 0.00 0.00 32.26 2.24
600 686 1.940613 GAACTGCCTTTGTTCAGACGT 59.059 47.619 0.00 0.00 42.22 4.34
609 695 3.820467 TGGTAGAACATGAACTGCCTTTG 59.180 43.478 22.11 0.00 39.13 2.77
613 699 3.674997 TCTTGGTAGAACATGAACTGCC 58.325 45.455 17.89 17.89 38.91 4.85
626 721 7.546358 TGGCATGAAATTAATGTTCTTGGTAG 58.454 34.615 17.63 0.00 33.16 3.18
685 780 7.438160 TGTCAGACTTTAGAGTACACAACAATG 59.562 37.037 1.31 0.00 35.88 2.82
686 781 7.497595 TGTCAGACTTTAGAGTACACAACAAT 58.502 34.615 1.31 0.00 35.88 2.71
719 814 7.338800 CTTTGCATAAAGGTACCATGAGAAT 57.661 36.000 15.94 0.00 39.67 2.40
720 815 6.757897 CTTTGCATAAAGGTACCATGAGAA 57.242 37.500 15.94 6.80 39.67 2.87
732 827 9.173939 CGCTATCTAAATTTCCTTTGCATAAAG 57.826 33.333 0.00 0.00 42.34 1.85
733 828 8.682710 ACGCTATCTAAATTTCCTTTGCATAAA 58.317 29.630 0.00 0.00 0.00 1.40
734 829 8.220755 ACGCTATCTAAATTTCCTTTGCATAA 57.779 30.769 0.00 0.00 0.00 1.90
735 830 7.801716 ACGCTATCTAAATTTCCTTTGCATA 57.198 32.000 0.00 0.00 0.00 3.14
736 831 6.699575 ACGCTATCTAAATTTCCTTTGCAT 57.300 33.333 0.00 0.00 0.00 3.96
737 832 6.072175 ACAACGCTATCTAAATTTCCTTTGCA 60.072 34.615 0.00 0.00 0.00 4.08
738 833 6.322491 ACAACGCTATCTAAATTTCCTTTGC 58.678 36.000 0.00 0.00 0.00 3.68
739 834 7.807907 ACAACAACGCTATCTAAATTTCCTTTG 59.192 33.333 0.00 0.00 0.00 2.77
740 835 7.807907 CACAACAACGCTATCTAAATTTCCTTT 59.192 33.333 0.00 0.00 0.00 3.11
741 836 7.040686 ACACAACAACGCTATCTAAATTTCCTT 60.041 33.333 0.00 0.00 0.00 3.36
742 837 6.430000 ACACAACAACGCTATCTAAATTTCCT 59.570 34.615 0.00 0.00 0.00 3.36
743 838 6.608610 ACACAACAACGCTATCTAAATTTCC 58.391 36.000 0.00 0.00 0.00 3.13
744 839 8.440833 AGTACACAACAACGCTATCTAAATTTC 58.559 33.333 0.00 0.00 0.00 2.17
745 840 8.319143 AGTACACAACAACGCTATCTAAATTT 57.681 30.769 0.00 0.00 0.00 1.82
746 841 7.817962 AGAGTACACAACAACGCTATCTAAATT 59.182 33.333 0.00 0.00 0.00 1.82
747 842 7.321153 AGAGTACACAACAACGCTATCTAAAT 58.679 34.615 0.00 0.00 0.00 1.40
748 843 6.684686 AGAGTACACAACAACGCTATCTAAA 58.315 36.000 0.00 0.00 0.00 1.85
749 844 6.263516 AGAGTACACAACAACGCTATCTAA 57.736 37.500 0.00 0.00 0.00 2.10
750 845 5.892160 AGAGTACACAACAACGCTATCTA 57.108 39.130 0.00 0.00 0.00 1.98
751 846 4.785511 AGAGTACACAACAACGCTATCT 57.214 40.909 0.00 0.00 0.00 1.98
752 847 6.585322 ACTTTAGAGTACACAACAACGCTATC 59.415 38.462 0.00 0.00 33.32 2.08
753 848 6.453092 ACTTTAGAGTACACAACAACGCTAT 58.547 36.000 0.00 0.00 33.32 2.97
754 849 5.835257 ACTTTAGAGTACACAACAACGCTA 58.165 37.500 0.00 0.00 33.32 4.26
755 850 4.690122 ACTTTAGAGTACACAACAACGCT 58.310 39.130 0.00 0.00 33.32 5.07
756 851 4.743644 AGACTTTAGAGTACACAACAACGC 59.256 41.667 0.00 0.00 35.88 4.84
757 852 5.975344 TCAGACTTTAGAGTACACAACAACG 59.025 40.000 0.00 0.00 35.88 4.10
758 853 6.755141 TGTCAGACTTTAGAGTACACAACAAC 59.245 38.462 1.31 0.00 35.88 3.32
759 854 6.869695 TGTCAGACTTTAGAGTACACAACAA 58.130 36.000 1.31 0.00 35.88 2.83
760 855 6.459670 TGTCAGACTTTAGAGTACACAACA 57.540 37.500 1.31 0.00 35.88 3.33
761 856 6.074249 GCTTGTCAGACTTTAGAGTACACAAC 60.074 42.308 1.31 0.00 35.88 3.32
762 857 5.983720 GCTTGTCAGACTTTAGAGTACACAA 59.016 40.000 1.31 0.00 35.88 3.33
763 858 5.068591 TGCTTGTCAGACTTTAGAGTACACA 59.931 40.000 1.31 0.00 35.88 3.72
764 859 5.402867 GTGCTTGTCAGACTTTAGAGTACAC 59.597 44.000 1.31 0.00 35.88 2.90
765 860 5.302059 AGTGCTTGTCAGACTTTAGAGTACA 59.698 40.000 1.31 0.00 35.88 2.90
766 861 5.774630 AGTGCTTGTCAGACTTTAGAGTAC 58.225 41.667 1.31 2.69 35.88 2.73
767 862 5.535030 TGAGTGCTTGTCAGACTTTAGAGTA 59.465 40.000 1.31 0.00 35.88 2.59
768 863 4.342378 TGAGTGCTTGTCAGACTTTAGAGT 59.658 41.667 1.31 0.00 39.32 3.24
769 864 4.876125 TGAGTGCTTGTCAGACTTTAGAG 58.124 43.478 1.31 0.00 0.00 2.43
770 865 4.937201 TGAGTGCTTGTCAGACTTTAGA 57.063 40.909 1.31 0.00 0.00 2.10
771 866 6.815641 ACATATGAGTGCTTGTCAGACTTTAG 59.184 38.462 10.38 0.00 0.00 1.85
772 867 6.701340 ACATATGAGTGCTTGTCAGACTTTA 58.299 36.000 10.38 0.00 0.00 1.85
773 868 5.555017 ACATATGAGTGCTTGTCAGACTTT 58.445 37.500 10.38 0.00 0.00 2.66
774 869 5.157940 ACATATGAGTGCTTGTCAGACTT 57.842 39.130 10.38 0.00 0.00 3.01
775 870 4.815533 ACATATGAGTGCTTGTCAGACT 57.184 40.909 10.38 0.00 0.00 3.24
776 871 5.174395 AGAACATATGAGTGCTTGTCAGAC 58.826 41.667 10.38 0.00 0.00 3.51
777 872 5.047092 TGAGAACATATGAGTGCTTGTCAGA 60.047 40.000 10.38 0.00 0.00 3.27
778 873 5.173664 TGAGAACATATGAGTGCTTGTCAG 58.826 41.667 10.38 0.00 0.00 3.51
779 874 5.151297 TGAGAACATATGAGTGCTTGTCA 57.849 39.130 10.38 4.34 0.00 3.58
780 875 5.814188 TCATGAGAACATATGAGTGCTTGTC 59.186 40.000 10.38 1.63 35.09 3.18
781 876 5.737860 TCATGAGAACATATGAGTGCTTGT 58.262 37.500 10.38 0.00 35.09 3.16
782 877 6.862711 ATCATGAGAACATATGAGTGCTTG 57.137 37.500 10.38 5.14 36.81 4.01
783 878 7.503549 TGTATCATGAGAACATATGAGTGCTT 58.496 34.615 10.38 0.00 36.81 3.91
784 879 7.059202 TGTATCATGAGAACATATGAGTGCT 57.941 36.000 10.38 0.52 36.81 4.40
785 880 7.902387 ATGTATCATGAGAACATATGAGTGC 57.098 36.000 19.68 0.00 36.81 4.40
793 888 9.961265 CTTTGCATAAATGTATCATGAGAACAT 57.039 29.630 16.81 16.81 35.40 2.71
794 889 9.176460 TCTTTGCATAAATGTATCATGAGAACA 57.824 29.630 14.16 14.16 0.00 3.18
836 931 6.153067 CCTGTCAGACTTTAGAGTACACAAG 58.847 44.000 0.00 0.00 35.88 3.16
866 961 5.243507 ACATCGAGCAGAGTATCATGAGAAT 59.756 40.000 0.09 0.00 37.82 2.40
905 1000 4.707934 TCATCTTCATCCACACAAATGCAT 59.292 37.500 0.00 0.00 0.00 3.96
935 1030 9.586732 TGGCTTCTGTTAGGCAATTATTATATT 57.413 29.630 0.00 0.00 46.29 1.28
975 1070 3.781079 CTGGAAGCAGAGTAGACTGAG 57.219 52.381 0.00 0.00 39.94 3.35
1042 1138 2.786777 ACAGATCAGCAATGCAAGACA 58.213 42.857 8.35 0.00 0.00 3.41
1065 1161 6.203915 TGCAAGACACGTCATTACAAATTAGT 59.796 34.615 0.00 0.00 0.00 2.24
1139 1235 1.292223 CCTCCGGTCTTTTCGCTCA 59.708 57.895 0.00 0.00 0.00 4.26
1340 1436 1.950216 TGCTGAAATGTAAACACGGCA 59.050 42.857 0.00 0.00 39.91 5.69
1388 1484 6.207221 ACATGTGATAGTCATTTTGCTTGTCA 59.793 34.615 0.00 0.00 0.00 3.58
1460 1556 0.107945 ATTCTCTGTCCTGCTTCGGC 60.108 55.000 0.00 0.00 42.19 5.54
1481 1578 8.863872 AGACTTGTAGCATAATTAAAACAGGT 57.136 30.769 7.08 7.08 30.96 4.00
1491 1588 9.700831 AGGGAAATTTTAGACTTGTAGCATAAT 57.299 29.630 0.00 0.00 0.00 1.28
1493 1590 7.067008 GCAGGGAAATTTTAGACTTGTAGCATA 59.933 37.037 0.00 0.00 0.00 3.14
1494 1591 6.127619 GCAGGGAAATTTTAGACTTGTAGCAT 60.128 38.462 0.00 0.00 0.00 3.79
1495 1592 5.183140 GCAGGGAAATTTTAGACTTGTAGCA 59.817 40.000 0.00 0.00 0.00 3.49
1496 1593 5.393135 GGCAGGGAAATTTTAGACTTGTAGC 60.393 44.000 0.00 0.00 0.00 3.58
1497 1594 5.946377 AGGCAGGGAAATTTTAGACTTGTAG 59.054 40.000 0.00 0.00 0.00 2.74
1511 1608 8.822805 CCTACAGTATATATAAAGGCAGGGAAA 58.177 37.037 0.00 0.00 0.00 3.13
1615 1712 2.025898 TCGAGTATTGTATCCGCACCA 58.974 47.619 0.00 0.00 0.00 4.17
1648 1745 0.176910 TTGGCCAGCATGCATCATTG 59.823 50.000 21.98 8.77 31.97 2.82
1654 1751 1.752498 CTATCTTTTGGCCAGCATGCA 59.248 47.619 21.98 0.00 31.97 3.96
1870 1967 7.278424 GTGGTGATGTTCATCAATTTATTTGGG 59.722 37.037 15.65 0.00 39.52 4.12
1880 1977 4.275689 GTCAACTGTGGTGATGTTCATCAA 59.724 41.667 15.65 0.78 39.52 2.57
1894 1991 2.078849 TGATGTAGCGGTCAACTGTG 57.921 50.000 0.00 0.00 0.00 3.66
1897 1994 4.159693 TGATACTTGATGTAGCGGTCAACT 59.840 41.667 0.00 0.00 40.16 3.16
1918 2015 4.313282 CTCTCTCAAACTCTTGCACATGA 58.687 43.478 0.00 0.00 32.14 3.07
2041 2138 4.960938 AGTTAAGATGCTGCGAATATGGA 58.039 39.130 0.00 0.00 0.00 3.41
2061 2161 7.443575 TGACAAAGTTAGTCTTCTACGTAGAGT 59.556 37.037 23.51 13.98 36.94 3.24
2067 2167 7.695869 AAGTTGACAAAGTTAGTCTTCTACG 57.304 36.000 0.00 0.00 36.94 3.51
2125 2225 0.734309 TGGCGAATGTTAGCATGCAG 59.266 50.000 21.98 1.56 35.15 4.41
2126 2226 0.451383 GTGGCGAATGTTAGCATGCA 59.549 50.000 21.98 2.77 35.15 3.96
2127 2227 0.734889 AGTGGCGAATGTTAGCATGC 59.265 50.000 10.51 10.51 35.15 4.06
2129 2229 2.283298 CAGAGTGGCGAATGTTAGCAT 58.717 47.619 0.54 0.00 36.80 3.79
2134 2234 2.420022 GCATAACAGAGTGGCGAATGTT 59.580 45.455 0.00 0.00 39.16 2.71
2140 2240 1.020861 TGCAGCATAACAGAGTGGCG 61.021 55.000 0.00 0.00 0.00 5.69
2141 2241 0.731417 CTGCAGCATAACAGAGTGGC 59.269 55.000 0.00 0.00 35.90 5.01
2149 2249 2.819608 TCTTGAAACCCTGCAGCATAAC 59.180 45.455 8.66 0.00 0.00 1.89
2197 2297 8.629158 ACTGTCTATCTTCTGCATTCTAGTTAG 58.371 37.037 0.00 0.00 0.00 2.34
2264 2364 4.655963 AGTGGCATCAAGTATTTGTCAGT 58.344 39.130 0.00 0.00 35.73 3.41
2265 2365 5.633830 AAGTGGCATCAAGTATTTGTCAG 57.366 39.130 0.00 0.00 35.73 3.51
2269 2369 8.487176 GTTAAACAAAGTGGCATCAAGTATTTG 58.513 33.333 0.00 0.00 35.57 2.32
2270 2370 8.200792 TGTTAAACAAAGTGGCATCAAGTATTT 58.799 29.630 0.00 0.00 0.00 1.40
2279 2379 8.825745 CATTTAAAGTGTTAAACAAAGTGGCAT 58.174 29.630 0.00 0.00 40.98 4.40
2335 2435 1.582610 AACCACCGCCAGCATTTACG 61.583 55.000 0.00 0.00 0.00 3.18
2441 2541 3.498397 GCAGACTCATGTTCCTCGAAAAA 59.502 43.478 0.00 0.00 0.00 1.94
2442 2542 3.067106 GCAGACTCATGTTCCTCGAAAA 58.933 45.455 0.00 0.00 0.00 2.29
2443 2543 2.300152 AGCAGACTCATGTTCCTCGAAA 59.700 45.455 0.00 0.00 0.00 3.46
2444 2544 1.895798 AGCAGACTCATGTTCCTCGAA 59.104 47.619 0.00 0.00 0.00 3.71
2445 2545 1.203287 CAGCAGACTCATGTTCCTCGA 59.797 52.381 0.00 0.00 0.00 4.04
2446 2546 1.067283 ACAGCAGACTCATGTTCCTCG 60.067 52.381 0.00 0.00 0.00 4.63
2447 2547 2.758736 ACAGCAGACTCATGTTCCTC 57.241 50.000 0.00 0.00 0.00 3.71
2448 2548 4.833478 ATAACAGCAGACTCATGTTCCT 57.167 40.909 5.32 0.00 38.14 3.36
2449 2549 5.886960 AAATAACAGCAGACTCATGTTCC 57.113 39.130 5.32 0.00 38.14 3.62
2450 2550 6.150140 AGGAAAATAACAGCAGACTCATGTTC 59.850 38.462 5.32 0.00 38.14 3.18
2451 2551 6.006449 AGGAAAATAACAGCAGACTCATGTT 58.994 36.000 6.94 6.94 40.17 2.71
2452 2552 5.564550 AGGAAAATAACAGCAGACTCATGT 58.435 37.500 0.00 0.00 0.00 3.21
2534 2634 6.639632 ATTACTTCAAGAAGCTTGCTTTGA 57.360 33.333 2.10 8.57 41.99 2.69
2543 2643 7.011857 CACCTTCCATCTATTACTTCAAGAAGC 59.988 40.741 9.62 0.00 41.99 3.86
2611 2713 3.797559 AGGTAGCAGGAGAAAGCTTTT 57.202 42.857 14.05 3.35 42.05 2.27
2660 2765 4.283212 CCCAAAAATTCAGGAAGTTGGCTA 59.717 41.667 12.81 0.00 0.00 3.93
2693 2798 0.976641 CTCCCTCACCAGCACAAGTA 59.023 55.000 0.00 0.00 0.00 2.24
2932 3039 6.544038 ACAAAGCTATTTTTGGCATTTCAC 57.456 33.333 1.22 0.00 41.29 3.18
3051 3182 3.625897 CAGCTGGACCGGACACCA 61.626 66.667 9.46 13.88 34.81 4.17
3162 3296 8.913487 TGAGAATGCTGTTGTATATCATTCAT 57.087 30.769 13.51 2.16 43.08 2.57
3163 3297 8.615211 GTTGAGAATGCTGTTGTATATCATTCA 58.385 33.333 13.51 0.00 43.08 2.57
3164 3298 8.834465 AGTTGAGAATGCTGTTGTATATCATTC 58.166 33.333 0.00 0.00 41.77 2.67
3165 3299 8.618677 CAGTTGAGAATGCTGTTGTATATCATT 58.381 33.333 0.00 0.00 0.00 2.57
3310 3444 2.132762 CGACGTACTGAACTTGCCTTT 58.867 47.619 0.00 0.00 0.00 3.11
3425 3559 4.698304 CCTACAATCGGCTTCTTAAAACCA 59.302 41.667 0.00 0.00 0.00 3.67
3468 3602 8.554490 AGTTAACTGTGAGGATAGGTAATCAT 57.446 34.615 7.48 0.00 36.20 2.45
3624 3759 8.474025 TGAGAGAAAGAAAAGGCAAATTGTTAA 58.526 29.630 0.00 0.00 0.00 2.01
3641 3776 5.220739 CCCTGTTATTCGCAATGAGAGAAAG 60.221 44.000 0.00 0.00 39.51 2.62
3819 3967 5.537300 AGGAGATTCAGTATACGCACATT 57.463 39.130 0.00 0.00 0.00 2.71
4176 4334 4.035558 TCAGTGCACTGTCTGTTCATTTTC 59.964 41.667 38.41 0.00 44.12 2.29
4189 4347 6.634436 GTCAAAATTCTTAGTTCAGTGCACTG 59.366 38.462 36.07 36.07 45.08 3.66
4409 4574 2.357637 AGTGGGTTGTTGACAATCGTTG 59.642 45.455 0.00 0.00 37.83 4.10
4416 4581 1.418637 GGAGGTAGTGGGTTGTTGACA 59.581 52.381 0.00 0.00 0.00 3.58
4468 4633 1.537202 GAACGCTTCAACTGCTGGATT 59.463 47.619 0.00 0.00 0.00 3.01
4530 4695 1.305046 ATCAACCCGACCCTCGAGT 60.305 57.895 12.31 0.00 43.74 4.18
4763 5227 5.473162 TCATATTACATTTGAGATTGGCGGG 59.527 40.000 0.00 0.00 0.00 6.13
4765 5229 8.854979 TTTTCATATTACATTTGAGATTGGCG 57.145 30.769 0.00 0.00 0.00 5.69
4944 5409 2.584835 AGCAGTAAAATGGTGAGGCA 57.415 45.000 0.00 0.00 0.00 4.75
5042 5507 9.757227 CCCAAATGTTGTCTCAAGTTTAATTAA 57.243 29.630 0.00 0.00 0.00 1.40
5103 5569 2.146342 CATTTGACACTCGTTGGCTCT 58.854 47.619 0.00 0.00 32.31 4.09
5276 5743 4.993705 ATTCTTGGGAGTTACAACCTCA 57.006 40.909 0.00 0.00 0.00 3.86
5416 5883 2.045340 CCTTGGGCCTTACCGTGG 60.045 66.667 4.53 0.00 40.62 4.94
5427 5894 7.791029 AGTTTTATTTAACATATGGCCTTGGG 58.209 34.615 3.32 0.00 0.00 4.12
5501 5968 1.529948 CCGCCCATGGATGCAGAAT 60.530 57.895 15.22 0.00 0.00 2.40
5566 6033 7.656412 TGTATCTAGCTTCTTCTTATCTGCAG 58.344 38.462 7.63 7.63 0.00 4.41
5574 6200 7.093112 ACAGACCATTGTATCTAGCTTCTTCTT 60.093 37.037 0.00 0.00 0.00 2.52
5575 6201 6.382570 ACAGACCATTGTATCTAGCTTCTTCT 59.617 38.462 0.00 0.00 0.00 2.85
5576 6202 6.578023 ACAGACCATTGTATCTAGCTTCTTC 58.422 40.000 0.00 0.00 0.00 2.87
5611 6237 2.035442 GTGCCAGCTTCTTCGGGAC 61.035 63.158 0.00 0.00 33.81 4.46
5617 6243 1.542492 CTCCAATGTGCCAGCTTCTT 58.458 50.000 0.00 0.00 0.00 2.52
5649 6275 3.971305 TGTCACCCTCCTTTGTCTAGAAA 59.029 43.478 0.00 0.00 0.00 2.52
5651 6277 2.897969 GTGTCACCCTCCTTTGTCTAGA 59.102 50.000 0.00 0.00 0.00 2.43
5691 6317 2.804527 CTCATCCATATGCGGTTCTGTG 59.195 50.000 0.00 0.00 32.76 3.66
5694 6320 1.696336 AGCTCATCCATATGCGGTTCT 59.304 47.619 0.00 0.00 32.76 3.01
5708 6334 3.245016 TGTCCAACTCCAATGAAGCTCAT 60.245 43.478 0.00 0.00 39.09 2.90
5723 6349 5.254901 TCTACTAGTTCCTCTCTGTCCAAC 58.745 45.833 0.00 0.00 0.00 3.77
5724 6350 5.251005 TCTCTACTAGTTCCTCTCTGTCCAA 59.749 44.000 0.00 0.00 0.00 3.53
5725 6351 4.783763 TCTCTACTAGTTCCTCTCTGTCCA 59.216 45.833 0.00 0.00 0.00 4.02
5726 6352 5.362105 TCTCTACTAGTTCCTCTCTGTCC 57.638 47.826 0.00 0.00 0.00 4.02
5729 6355 8.795842 TTTAGTTCTCTACTAGTTCCTCTCTG 57.204 38.462 0.00 0.00 40.35 3.35
5730 6356 9.234827 GTTTTAGTTCTCTACTAGTTCCTCTCT 57.765 37.037 0.00 0.00 40.35 3.10
5731 6357 9.012161 TGTTTTAGTTCTCTACTAGTTCCTCTC 57.988 37.037 0.00 0.00 40.35 3.20
5733 6359 8.795513 AGTGTTTTAGTTCTCTACTAGTTCCTC 58.204 37.037 0.00 0.00 40.35 3.71
5734 6360 8.709272 AGTGTTTTAGTTCTCTACTAGTTCCT 57.291 34.615 0.00 0.00 40.35 3.36
5735 6361 9.409312 GAAGTGTTTTAGTTCTCTACTAGTTCC 57.591 37.037 0.00 0.00 40.35 3.62
5736 6362 9.962783 TGAAGTGTTTTAGTTCTCTACTAGTTC 57.037 33.333 0.00 0.00 40.35 3.01
5737 6363 9.968870 CTGAAGTGTTTTAGTTCTCTACTAGTT 57.031 33.333 0.00 0.00 40.35 2.24
5738 6364 9.352191 TCTGAAGTGTTTTAGTTCTCTACTAGT 57.648 33.333 0.00 0.00 40.35 2.57
5759 6385 6.457663 CGTGGTTAGTGTTTGTGAATTCTGAA 60.458 38.462 7.05 0.00 0.00 3.02
5815 6441 5.296748 TCAATGACATCAACGAGTCAAAGA 58.703 37.500 0.00 0.00 46.62 2.52
5825 6451 4.633565 GTCCTTCCTCTCAATGACATCAAC 59.366 45.833 0.00 0.00 0.00 3.18
5830 6456 3.118992 CGATGTCCTTCCTCTCAATGACA 60.119 47.826 0.00 0.00 35.97 3.58
5835 6461 2.525368 TGTCGATGTCCTTCCTCTCAA 58.475 47.619 0.00 0.00 0.00 3.02
5847 6473 1.221840 GCTGTCCCCATGTCGATGT 59.778 57.895 0.00 0.00 0.00 3.06
5862 6488 4.264253 TGTGAATAATGGTTCCTCAGCTG 58.736 43.478 7.63 7.63 0.00 4.24
5867 6493 4.402155 TGGCAATGTGAATAATGGTTCCTC 59.598 41.667 0.00 0.00 0.00 3.71
5875 6501 3.119029 GCAGTGGTGGCAATGTGAATAAT 60.119 43.478 0.00 0.00 0.00 1.28
5890 6516 4.056050 CGTAGTGAAGTTTAAGCAGTGGT 58.944 43.478 0.00 0.00 0.00 4.16
5896 6522 4.377124 GGCTTGTCGTAGTGAAGTTTAAGC 60.377 45.833 0.00 0.00 37.77 3.09
5898 6524 3.737266 CGGCTTGTCGTAGTGAAGTTTAA 59.263 43.478 0.00 0.00 0.00 1.52
5909 6535 2.288579 ACTTCATTGTCGGCTTGTCGTA 60.289 45.455 0.00 0.00 0.00 3.43
5910 6536 1.148310 CTTCATTGTCGGCTTGTCGT 58.852 50.000 0.00 0.00 0.00 4.34
5923 6550 3.244078 TGCGTAGTGTCTCCAACTTCATT 60.244 43.478 0.00 0.00 0.00 2.57
5925 6552 1.684450 TGCGTAGTGTCTCCAACTTCA 59.316 47.619 0.00 0.00 0.00 3.02
5929 6556 1.137513 GTGTGCGTAGTGTCTCCAAC 58.862 55.000 0.00 0.00 0.00 3.77
5937 6564 1.136363 CACGGATTTGTGTGCGTAGTG 60.136 52.381 0.00 0.00 44.43 2.74
5966 6596 1.196104 TTCTACAACGGGGTGAGGGG 61.196 60.000 0.00 0.00 0.00 4.79
5974 6604 4.628333 ACGTAAATGATGTTCTACAACGGG 59.372 41.667 0.00 0.00 34.95 5.28
5975 6605 5.119588 ACACGTAAATGATGTTCTACAACGG 59.880 40.000 0.00 0.00 34.95 4.44


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.