Multiple sequence alignment - TraesCS2B01G533200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G533200 chr2B 100.000 4620 0 0 1 4620 729524256 729528875 0.000000e+00 8532.0
1 TraesCS2B01G533200 chr2B 98.113 53 1 0 177 229 19847732 19847680 4.920000e-15 93.5
2 TraesCS2B01G533200 chr2B 96.226 53 2 0 177 229 666487429 666487377 2.290000e-13 87.9
3 TraesCS2B01G533200 chr2B 96.226 53 2 0 177 229 717039696 717039644 2.290000e-13 87.9
4 TraesCS2B01G533200 chr2B 92.453 53 4 0 177 229 69254108 69254160 4.960000e-10 76.8
5 TraesCS2B01G533200 chr2D 91.945 2930 147 34 1433 4313 599895097 599897986 0.000000e+00 4021.0
6 TraesCS2B01G533200 chr2D 86.413 552 43 19 819 1365 599894023 599894547 4.010000e-160 575.0
7 TraesCS2B01G533200 chr2D 88.822 331 12 6 4314 4620 599898014 599898343 2.610000e-102 383.0
8 TraesCS2B01G533200 chr2D 83.784 444 25 20 390 818 599893583 599893994 1.210000e-100 377.0
9 TraesCS2B01G533200 chr2D 90.526 95 9 0 55 149 599893248 599893342 4.850000e-25 126.0
10 TraesCS2B01G533200 chr2D 98.039 51 1 0 266 316 599893514 599893564 6.370000e-14 89.8
11 TraesCS2B01G533200 chr2A 95.108 879 37 5 2256 3134 733541474 733542346 0.000000e+00 1380.0
12 TraesCS2B01G533200 chr2A 94.689 885 44 3 3133 4015 733542586 733543469 0.000000e+00 1371.0
13 TraesCS2B01G533200 chr2A 88.032 869 56 14 1371 2224 733540647 733541482 0.000000e+00 985.0
14 TraesCS2B01G533200 chr2A 92.517 441 19 6 891 1331 733540216 733540642 1.830000e-173 619.0
15 TraesCS2B01G533200 chr2A 92.784 97 4 3 3665 3759 65084905 65084810 2.240000e-28 137.0
16 TraesCS2B01G533200 chr5D 89.908 109 9 2 3651 3757 310705247 310705355 6.230000e-29 139.0
17 TraesCS2B01G533200 chr5B 89.286 112 6 6 3661 3768 62940417 62940308 8.060000e-28 135.0
18 TraesCS2B01G533200 chr5B 94.340 53 3 0 177 229 492157541 492157489 1.070000e-11 82.4
19 TraesCS2B01G533200 chr6D 91.753 97 5 3 3665 3759 196357998 196357903 1.040000e-26 132.0
20 TraesCS2B01G533200 chr6A 91.753 97 5 3 3665 3759 508000951 508000856 1.040000e-26 132.0
21 TraesCS2B01G533200 chr5A 91.753 97 5 3 3665 3759 560883388 560883483 1.040000e-26 132.0
22 TraesCS2B01G533200 chr1A 91.753 97 5 3 3665 3759 527083926 527084021 1.040000e-26 132.0
23 TraesCS2B01G533200 chr7B 98.113 53 1 0 177 229 711079021 711079073 4.920000e-15 93.5
24 TraesCS2B01G533200 chr7B 94.340 53 3 0 177 229 570266287 570266339 1.070000e-11 82.4
25 TraesCS2B01G533200 chr3B 98.113 53 1 0 177 229 744372046 744372098 4.920000e-15 93.5
26 TraesCS2B01G533200 chr4A 94.118 51 2 1 179 229 722340102 722340053 4.960000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G533200 chr2B 729524256 729528875 4619 False 8532.000000 8532 100.0000 1 4620 1 chr2B.!!$F2 4619
1 TraesCS2B01G533200 chr2D 599893248 599898343 5095 False 928.633333 4021 89.9215 55 4620 6 chr2D.!!$F1 4565
2 TraesCS2B01G533200 chr2A 733540216 733543469 3253 False 1088.750000 1380 92.5865 891 4015 4 chr2A.!!$F1 3124

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
386 447 0.036483 TTGGCTGCTGCGTCTGATTA 60.036 50.0 9.65 0.0 40.82 1.75 F
1401 1906 0.036732 TGCGTGCTCCTCCTGATTTT 59.963 50.0 0.00 0.0 0.00 1.82 F
1511 2114 0.108709 CATTCACATGGTTTGGGCCG 60.109 55.0 0.00 0.0 0.00 6.13 F
3268 4165 0.322322 ACCGCCGGACATACAAGAAA 59.678 50.0 11.71 0.0 0.00 2.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1609 2212 1.092348 GAGTCCGCCAATAAACACCC 58.908 55.0 0.00 0.00 0.00 4.61 R
3268 4165 0.752009 TGACGCCTCCGAGCTCTATT 60.752 55.0 12.85 0.00 38.29 1.73 R
3398 4295 1.210204 TCCCTGCTTGCCTTGGAGAT 61.210 55.0 0.00 0.00 0.00 2.75 R
4152 5053 0.546122 TTTAGGGGCATGATGCGAGT 59.454 50.0 11.75 0.27 46.21 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 8.451748 AGTTTTTCAGTGTCACTTTCTAAAGTC 58.548 33.333 1.67 0.00 45.65 3.01
32 33 8.451748 GTTTTTCAGTGTCACTTTCTAAAGTCT 58.548 33.333 1.67 0.00 45.65 3.24
33 34 8.561738 TTTTCAGTGTCACTTTCTAAAGTCTT 57.438 30.769 1.67 0.00 45.65 3.01
34 35 8.561738 TTTCAGTGTCACTTTCTAAAGTCTTT 57.438 30.769 1.67 2.81 45.65 2.52
35 36 8.561738 TTCAGTGTCACTTTCTAAAGTCTTTT 57.438 30.769 1.67 0.00 45.65 2.27
36 37 8.561738 TCAGTGTCACTTTCTAAAGTCTTTTT 57.438 30.769 1.67 0.00 45.65 1.94
37 38 8.450964 TCAGTGTCACTTTCTAAAGTCTTTTTG 58.549 33.333 1.67 3.29 45.65 2.44
38 39 8.450964 CAGTGTCACTTTCTAAAGTCTTTTTGA 58.549 33.333 1.67 0.27 45.65 2.69
39 40 9.178758 AGTGTCACTTTCTAAAGTCTTTTTGAT 57.821 29.630 2.51 0.00 45.65 2.57
40 41 9.788960 GTGTCACTTTCTAAAGTCTTTTTGATT 57.211 29.630 2.51 0.00 45.65 2.57
62 63 9.844790 TGATTTGTCAATAGTCTTTTTGCATAG 57.155 29.630 0.00 0.00 0.00 2.23
79 80 3.069158 GCATAGCAAATCATTGGAGCCTT 59.931 43.478 0.00 0.00 37.02 4.35
84 85 3.841643 CAAATCATTGGAGCCTTGTGTC 58.158 45.455 0.00 0.00 32.69 3.67
96 97 3.898123 AGCCTTGTGTCTCTTCTTCAGTA 59.102 43.478 0.00 0.00 0.00 2.74
98 99 5.012561 AGCCTTGTGTCTCTTCTTCAGTAAT 59.987 40.000 0.00 0.00 0.00 1.89
140 141 2.620251 TTCCCTATGTCTCCATTGCG 57.380 50.000 0.00 0.00 32.29 4.85
155 216 2.177394 TTGCGTCTGCCTTGATACAA 57.823 45.000 0.00 0.00 41.78 2.41
176 237 9.775854 ATACAAATGAGATGAGGTTTGATCTAG 57.224 33.333 3.96 0.00 35.93 2.43
179 240 5.604758 TGAGATGAGGTTTGATCTAGGTG 57.395 43.478 0.00 0.00 0.00 4.00
182 243 3.616956 TGAGGTTTGATCTAGGTGCTG 57.383 47.619 0.00 0.00 0.00 4.41
183 244 2.906389 TGAGGTTTGATCTAGGTGCTGT 59.094 45.455 0.00 0.00 0.00 4.40
186 247 3.452627 AGGTTTGATCTAGGTGCTGTAGG 59.547 47.826 0.00 0.00 0.00 3.18
187 248 3.432326 GGTTTGATCTAGGTGCTGTAGGG 60.432 52.174 0.00 0.00 0.00 3.53
188 249 2.848678 TGATCTAGGTGCTGTAGGGT 57.151 50.000 0.00 0.00 0.00 4.34
190 251 2.024369 TGATCTAGGTGCTGTAGGGTCA 60.024 50.000 0.00 0.00 0.00 4.02
191 252 1.848652 TCTAGGTGCTGTAGGGTCAC 58.151 55.000 0.00 0.00 0.00 3.67
192 253 1.358103 TCTAGGTGCTGTAGGGTCACT 59.642 52.381 0.00 0.00 0.00 3.41
193 254 1.478510 CTAGGTGCTGTAGGGTCACTG 59.521 57.143 0.00 0.00 0.00 3.66
195 256 0.037232 GGTGCTGTAGGGTCACTGTC 60.037 60.000 0.00 0.00 0.00 3.51
198 259 1.276138 TGCTGTAGGGTCACTGTCATG 59.724 52.381 0.00 0.00 0.00 3.07
200 261 2.932622 GCTGTAGGGTCACTGTCATGTG 60.933 54.545 0.00 0.00 39.15 3.21
201 262 1.623311 TGTAGGGTCACTGTCATGTGG 59.377 52.381 0.00 0.00 38.40 4.17
202 263 1.899814 GTAGGGTCACTGTCATGTGGA 59.100 52.381 0.00 0.00 38.40 4.02
204 265 0.321653 GGGTCACTGTCATGTGGACC 60.322 60.000 12.37 12.37 46.38 4.46
205 266 0.321653 GGTCACTGTCATGTGGACCC 60.322 60.000 0.00 0.00 46.38 4.46
206 267 0.670546 GTCACTGTCATGTGGACCCG 60.671 60.000 0.00 0.00 46.38 5.28
207 268 1.375908 CACTGTCATGTGGACCCGG 60.376 63.158 0.00 0.00 46.38 5.73
208 269 2.436646 CTGTCATGTGGACCCGGC 60.437 66.667 0.00 0.00 46.38 6.13
209 270 3.976701 CTGTCATGTGGACCCGGCC 62.977 68.421 0.00 0.00 46.38 6.13
210 271 4.796495 GTCATGTGGACCCGGCCC 62.796 72.222 0.00 0.00 40.83 5.80
220 281 4.127744 CCCGGCCCCACATGTCAT 62.128 66.667 0.00 0.00 0.00 3.06
221 282 2.516930 CCGGCCCCACATGTCATC 60.517 66.667 0.00 0.00 0.00 2.92
222 283 2.516930 CGGCCCCACATGTCATCC 60.517 66.667 0.00 0.00 0.00 3.51
223 284 2.516930 GGCCCCACATGTCATCCG 60.517 66.667 0.00 0.00 0.00 4.18
224 285 3.211963 GCCCCACATGTCATCCGC 61.212 66.667 0.00 0.00 0.00 5.54
225 286 2.271821 CCCCACATGTCATCCGCA 59.728 61.111 0.00 0.00 0.00 5.69
226 287 2.114670 CCCCACATGTCATCCGCAC 61.115 63.158 0.00 0.00 0.00 5.34
227 288 1.078214 CCCACATGTCATCCGCACT 60.078 57.895 0.00 0.00 0.00 4.40
228 289 0.177836 CCCACATGTCATCCGCACTA 59.822 55.000 0.00 0.00 0.00 2.74
229 290 1.575244 CCACATGTCATCCGCACTAG 58.425 55.000 0.00 0.00 0.00 2.57
232 293 0.179076 CATGTCATCCGCACTAGCCA 60.179 55.000 0.00 0.00 37.52 4.75
233 294 0.179073 ATGTCATCCGCACTAGCCAC 60.179 55.000 0.00 0.00 37.52 5.01
234 295 1.878522 GTCATCCGCACTAGCCACG 60.879 63.158 0.00 0.00 37.52 4.94
235 296 3.264897 CATCCGCACTAGCCACGC 61.265 66.667 0.00 0.00 37.52 5.34
254 315 3.174790 GGTCGTATCCGATCGTTGG 57.825 57.895 15.09 0.00 46.30 3.77
255 316 0.318445 GGTCGTATCCGATCGTTGGG 60.318 60.000 15.09 0.00 46.30 4.12
257 318 1.663702 CGTATCCGATCGTTGGGCC 60.664 63.158 15.09 0.00 35.63 5.80
259 320 3.509137 TATCCGATCGTTGGGCCGC 62.509 63.158 15.09 0.00 0.00 6.53
310 371 1.077089 GGCTTCTCGTACTGGTTCGC 61.077 60.000 0.00 0.00 0.00 4.70
315 376 1.073216 CTCGTACTGGTTCGCTGCTG 61.073 60.000 0.00 0.00 0.00 4.41
316 377 1.372997 CGTACTGGTTCGCTGCTGT 60.373 57.895 0.00 0.00 0.00 4.40
317 378 0.944311 CGTACTGGTTCGCTGCTGTT 60.944 55.000 0.00 0.00 0.00 3.16
318 379 1.226746 GTACTGGTTCGCTGCTGTTT 58.773 50.000 0.00 0.00 0.00 2.83
319 380 1.069906 GTACTGGTTCGCTGCTGTTTG 60.070 52.381 0.00 0.00 0.00 2.93
320 381 1.283793 CTGGTTCGCTGCTGTTTGG 59.716 57.895 0.00 0.00 0.00 3.28
321 382 2.050077 GGTTCGCTGCTGTTTGGC 60.050 61.111 0.00 0.00 0.00 4.52
322 383 2.555547 GGTTCGCTGCTGTTTGGCT 61.556 57.895 0.00 0.00 0.00 4.75
323 384 1.234615 GGTTCGCTGCTGTTTGGCTA 61.235 55.000 0.00 0.00 0.00 3.93
324 385 0.804989 GTTCGCTGCTGTTTGGCTAT 59.195 50.000 0.00 0.00 0.00 2.97
325 386 0.804364 TTCGCTGCTGTTTGGCTATG 59.196 50.000 0.00 0.00 0.00 2.23
326 387 1.026182 TCGCTGCTGTTTGGCTATGG 61.026 55.000 0.00 0.00 0.00 2.74
327 388 1.811860 GCTGCTGTTTGGCTATGGG 59.188 57.895 0.00 0.00 0.00 4.00
328 389 1.811860 CTGCTGTTTGGCTATGGGC 59.188 57.895 0.00 0.00 40.90 5.36
329 390 0.682209 CTGCTGTTTGGCTATGGGCT 60.682 55.000 3.83 0.00 41.46 5.19
330 391 0.251742 TGCTGTTTGGCTATGGGCTT 60.252 50.000 3.83 0.00 41.46 4.35
331 392 0.897621 GCTGTTTGGCTATGGGCTTT 59.102 50.000 3.83 0.00 41.46 3.51
332 393 2.099405 GCTGTTTGGCTATGGGCTTTA 58.901 47.619 3.83 0.00 41.46 1.85
333 394 2.159240 GCTGTTTGGCTATGGGCTTTAC 60.159 50.000 3.83 0.28 41.46 2.01
334 395 3.088532 CTGTTTGGCTATGGGCTTTACA 58.911 45.455 3.83 4.79 41.46 2.41
335 396 2.823154 TGTTTGGCTATGGGCTTTACAC 59.177 45.455 3.83 0.00 41.46 2.90
336 397 1.745232 TTGGCTATGGGCTTTACACG 58.255 50.000 3.83 0.00 41.46 4.49
337 398 0.906066 TGGCTATGGGCTTTACACGA 59.094 50.000 3.83 0.00 41.46 4.35
338 399 1.134521 TGGCTATGGGCTTTACACGAG 60.135 52.381 3.83 0.00 41.46 4.18
339 400 0.938008 GCTATGGGCTTTACACGAGC 59.062 55.000 0.00 0.00 39.41 5.03
340 401 1.209128 CTATGGGCTTTACACGAGCG 58.791 55.000 0.00 0.00 41.03 5.03
342 403 3.849953 GGGCTTTACACGAGCGCG 61.850 66.667 8.75 8.75 42.06 6.86
343 404 4.500568 GGCTTTACACGAGCGCGC 62.501 66.667 26.66 26.66 41.03 6.86
344 405 4.828341 GCTTTACACGAGCGCGCG 62.828 66.667 31.62 31.62 42.48 6.86
345 406 4.191485 CTTTACACGAGCGCGCGG 62.191 66.667 35.34 25.61 42.48 6.46
368 429 1.257750 GCCGGCCTTTCATTTCCCTT 61.258 55.000 18.11 0.00 0.00 3.95
369 430 0.532115 CCGGCCTTTCATTTCCCTTG 59.468 55.000 0.00 0.00 0.00 3.61
370 431 0.532115 CGGCCTTTCATTTCCCTTGG 59.468 55.000 0.00 0.00 0.00 3.61
371 432 0.250234 GGCCTTTCATTTCCCTTGGC 59.750 55.000 0.00 0.00 38.28 4.52
372 433 1.269958 GCCTTTCATTTCCCTTGGCT 58.730 50.000 0.00 0.00 36.32 4.75
373 434 1.066645 GCCTTTCATTTCCCTTGGCTG 60.067 52.381 0.00 0.00 36.32 4.85
374 435 1.066645 CCTTTCATTTCCCTTGGCTGC 60.067 52.381 0.00 0.00 0.00 5.25
375 436 1.897802 CTTTCATTTCCCTTGGCTGCT 59.102 47.619 0.00 0.00 0.00 4.24
376 437 1.259609 TTCATTTCCCTTGGCTGCTG 58.740 50.000 0.00 0.00 0.00 4.41
377 438 1.217244 CATTTCCCTTGGCTGCTGC 59.783 57.895 7.10 7.10 38.76 5.25
378 439 2.345760 ATTTCCCTTGGCTGCTGCG 61.346 57.895 9.65 0.00 40.82 5.18
379 440 3.790416 TTTCCCTTGGCTGCTGCGT 62.790 57.895 9.65 0.00 40.82 5.24
380 441 4.704833 TCCCTTGGCTGCTGCGTC 62.705 66.667 9.65 0.00 40.82 5.19
381 442 4.711949 CCCTTGGCTGCTGCGTCT 62.712 66.667 9.65 0.00 40.82 4.18
382 443 3.429141 CCTTGGCTGCTGCGTCTG 61.429 66.667 9.65 0.12 40.82 3.51
383 444 2.357881 CTTGGCTGCTGCGTCTGA 60.358 61.111 9.65 0.00 40.82 3.27
384 445 1.744368 CTTGGCTGCTGCGTCTGAT 60.744 57.895 9.65 0.00 40.82 2.90
385 446 1.302752 TTGGCTGCTGCGTCTGATT 60.303 52.632 9.65 0.00 40.82 2.57
386 447 0.036483 TTGGCTGCTGCGTCTGATTA 60.036 50.000 9.65 0.00 40.82 1.75
387 448 0.740868 TGGCTGCTGCGTCTGATTAC 60.741 55.000 9.65 0.00 40.82 1.89
388 449 0.740868 GGCTGCTGCGTCTGATTACA 60.741 55.000 9.65 0.00 40.82 2.41
389 450 0.371645 GCTGCTGCGTCTGATTACAC 59.628 55.000 0.00 0.00 0.00 2.90
390 451 2.001812 CTGCTGCGTCTGATTACACT 57.998 50.000 0.00 0.00 0.00 3.55
391 452 1.923204 CTGCTGCGTCTGATTACACTC 59.077 52.381 0.00 0.00 0.00 3.51
392 453 1.546029 TGCTGCGTCTGATTACACTCT 59.454 47.619 0.00 0.00 0.00 3.24
398 459 3.799420 GCGTCTGATTACACTCTGATTCC 59.201 47.826 0.00 0.00 0.00 3.01
399 460 4.363999 CGTCTGATTACACTCTGATTCCC 58.636 47.826 0.00 0.00 0.00 3.97
412 473 2.909457 GATTCCCCTGCCGCCATTGA 62.909 60.000 0.00 0.00 0.00 2.57
413 474 3.936772 TTCCCCTGCCGCCATTGAC 62.937 63.158 0.00 0.00 0.00 3.18
497 564 2.001361 ATACGAGGTACGCAAGCGCT 62.001 55.000 15.09 2.64 46.94 5.92
522 589 3.578716 CCTGATACTCCCCATGTCGTATT 59.421 47.826 0.00 0.00 0.00 1.89
589 656 2.668550 AAAGTCCTTGGCCGACGC 60.669 61.111 0.00 0.00 35.33 5.19
638 705 5.437060 AGTTAATCCATGGCTAATGACGTT 58.563 37.500 6.96 0.00 38.72 3.99
642 709 1.330521 CCATGGCTAATGACGTTTCCG 59.669 52.381 0.00 0.00 38.72 4.30
654 721 1.135575 ACGTTTCCGCCTCGTACTAAG 60.136 52.381 0.00 0.00 37.70 2.18
655 722 1.131126 CGTTTCCGCCTCGTACTAAGA 59.869 52.381 0.00 0.00 0.00 2.10
656 723 2.790468 CGTTTCCGCCTCGTACTAAGAG 60.790 54.545 0.00 0.00 35.60 2.85
673 740 2.978010 GTGGGTCTGCGGTTGGTG 60.978 66.667 0.00 0.00 0.00 4.17
674 741 3.164977 TGGGTCTGCGGTTGGTGA 61.165 61.111 0.00 0.00 0.00 4.02
677 744 3.050275 GTCTGCGGTTGGTGAGCC 61.050 66.667 0.00 0.00 0.00 4.70
678 745 3.241530 TCTGCGGTTGGTGAGCCT 61.242 61.111 0.00 0.00 35.27 4.58
679 746 1.911269 TCTGCGGTTGGTGAGCCTA 60.911 57.895 0.00 0.00 35.27 3.93
680 747 1.448540 CTGCGGTTGGTGAGCCTAG 60.449 63.158 0.00 0.00 35.27 3.02
682 749 1.741770 GCGGTTGGTGAGCCTAGTG 60.742 63.158 0.00 0.00 35.27 2.74
683 750 1.671742 CGGTTGGTGAGCCTAGTGT 59.328 57.895 0.00 0.00 35.27 3.55
685 752 1.809684 GGTTGGTGAGCCTAGTGTTC 58.190 55.000 0.00 0.00 35.27 3.18
686 753 1.348036 GGTTGGTGAGCCTAGTGTTCT 59.652 52.381 0.00 0.00 35.27 3.01
688 755 3.007614 GGTTGGTGAGCCTAGTGTTCTTA 59.992 47.826 0.00 0.00 35.27 2.10
690 757 2.230508 TGGTGAGCCTAGTGTTCTTACG 59.769 50.000 0.00 0.00 35.27 3.18
691 758 2.416972 GGTGAGCCTAGTGTTCTTACGG 60.417 54.545 0.00 0.00 0.00 4.02
692 759 2.490903 GTGAGCCTAGTGTTCTTACGGA 59.509 50.000 0.00 0.00 0.00 4.69
693 760 3.130693 GTGAGCCTAGTGTTCTTACGGAT 59.869 47.826 0.00 0.00 0.00 4.18
694 761 3.380637 TGAGCCTAGTGTTCTTACGGATC 59.619 47.826 0.00 0.00 0.00 3.36
695 762 3.362706 AGCCTAGTGTTCTTACGGATCA 58.637 45.455 0.00 0.00 0.00 2.92
696 763 3.381908 AGCCTAGTGTTCTTACGGATCAG 59.618 47.826 0.00 0.00 0.00 2.90
697 764 3.130693 GCCTAGTGTTCTTACGGATCAGT 59.869 47.826 3.43 3.43 33.43 3.41
698 765 4.381718 GCCTAGTGTTCTTACGGATCAGTT 60.382 45.833 3.18 0.00 31.84 3.16
699 766 5.721232 CCTAGTGTTCTTACGGATCAGTTT 58.279 41.667 3.18 0.00 31.84 2.66
700 767 6.626623 GCCTAGTGTTCTTACGGATCAGTTTA 60.627 42.308 3.18 0.00 31.84 2.01
701 768 7.490000 CCTAGTGTTCTTACGGATCAGTTTAT 58.510 38.462 3.18 0.00 31.84 1.40
702 769 7.980099 CCTAGTGTTCTTACGGATCAGTTTATT 59.020 37.037 3.18 0.00 31.84 1.40
703 770 9.367444 CTAGTGTTCTTACGGATCAGTTTATTT 57.633 33.333 3.18 0.00 31.84 1.40
704 771 8.617290 AGTGTTCTTACGGATCAGTTTATTTT 57.383 30.769 3.18 0.00 0.00 1.82
705 772 8.504005 AGTGTTCTTACGGATCAGTTTATTTTG 58.496 33.333 3.18 0.00 0.00 2.44
706 773 7.270579 GTGTTCTTACGGATCAGTTTATTTTGC 59.729 37.037 3.18 0.00 0.00 3.68
707 774 7.174253 TGTTCTTACGGATCAGTTTATTTTGCT 59.826 33.333 3.18 0.00 0.00 3.91
708 775 8.662141 GTTCTTACGGATCAGTTTATTTTGCTA 58.338 33.333 3.18 0.00 0.00 3.49
709 776 8.193250 TCTTACGGATCAGTTTATTTTGCTAC 57.807 34.615 3.18 0.00 0.00 3.58
710 777 5.813080 ACGGATCAGTTTATTTTGCTACC 57.187 39.130 0.00 0.00 0.00 3.18
711 778 5.497474 ACGGATCAGTTTATTTTGCTACCT 58.503 37.500 0.00 0.00 0.00 3.08
712 779 5.585047 ACGGATCAGTTTATTTTGCTACCTC 59.415 40.000 0.00 0.00 0.00 3.85
713 780 5.817816 CGGATCAGTTTATTTTGCTACCTCT 59.182 40.000 0.00 0.00 0.00 3.69
714 781 6.984474 CGGATCAGTTTATTTTGCTACCTCTA 59.016 38.462 0.00 0.00 0.00 2.43
715 782 7.042658 CGGATCAGTTTATTTTGCTACCTCTAC 60.043 40.741 0.00 0.00 0.00 2.59
718 785 7.328737 TCAGTTTATTTTGCTACCTCTACTCC 58.671 38.462 0.00 0.00 0.00 3.85
720 787 7.064728 CAGTTTATTTTGCTACCTCTACTCCAC 59.935 40.741 0.00 0.00 0.00 4.02
725 792 1.751924 GCTACCTCTACTCCACTGTGG 59.248 57.143 20.86 20.86 39.43 4.17
738 805 4.352893 TCCACTGTGGTGATCTTGAGATA 58.647 43.478 25.15 0.00 45.61 1.98
739 806 4.160439 TCCACTGTGGTGATCTTGAGATAC 59.840 45.833 25.15 0.00 45.61 2.24
741 808 3.131223 ACTGTGGTGATCTTGAGATACGG 59.869 47.826 0.00 0.00 34.37 4.02
745 812 4.806247 GTGGTGATCTTGAGATACGGAAAG 59.194 45.833 0.00 0.00 34.37 2.62
747 814 4.099573 GGTGATCTTGAGATACGGAAAGGA 59.900 45.833 0.00 0.00 34.37 3.36
748 815 5.221541 GGTGATCTTGAGATACGGAAAGGAT 60.222 44.000 0.00 0.00 34.37 3.24
749 816 5.923684 GTGATCTTGAGATACGGAAAGGATC 59.076 44.000 0.00 0.00 40.62 3.36
750 817 5.598417 TGATCTTGAGATACGGAAAGGATCA 59.402 40.000 0.00 0.00 42.83 2.92
751 818 5.263968 TCTTGAGATACGGAAAGGATCAC 57.736 43.478 0.00 0.00 42.83 3.06
752 819 4.956700 TCTTGAGATACGGAAAGGATCACT 59.043 41.667 0.00 0.00 42.83 3.41
754 821 6.605995 TCTTGAGATACGGAAAGGATCACTTA 59.394 38.462 0.00 0.00 42.83 2.24
755 822 6.978674 TGAGATACGGAAAGGATCACTTAT 57.021 37.500 0.00 0.00 42.83 1.73
756 823 8.473358 TTGAGATACGGAAAGGATCACTTATA 57.527 34.615 0.00 0.00 42.83 0.98
757 824 8.112016 TGAGATACGGAAAGGATCACTTATAG 57.888 38.462 0.00 0.00 42.83 1.31
761 837 9.760077 GATACGGAAAGGATCACTTATAGAAAA 57.240 33.333 0.00 0.00 40.04 2.29
787 863 1.749063 AGTGACTCGTTCGGATATGCA 59.251 47.619 0.00 0.00 0.00 3.96
788 864 2.362397 AGTGACTCGTTCGGATATGCAT 59.638 45.455 3.79 3.79 0.00 3.96
789 865 2.472861 GTGACTCGTTCGGATATGCATG 59.527 50.000 10.16 0.00 0.00 4.06
799 875 6.311200 CGTTCGGATATGCATGATGAAAGATA 59.689 38.462 10.16 0.00 0.00 1.98
887 991 8.682936 ATTTACTGCTCTATTTGATTACAGGG 57.317 34.615 0.00 0.00 0.00 4.45
888 992 5.700402 ACTGCTCTATTTGATTACAGGGT 57.300 39.130 0.00 0.00 0.00 4.34
953 1066 5.683509 GCCTGCATCTACAATCTACACTCTT 60.684 44.000 0.00 0.00 0.00 2.85
976 1089 4.876125 TGTCTTCAGTCTGACATTCACTC 58.124 43.478 10.88 0.00 38.15 3.51
978 1091 4.922692 GTCTTCAGTCTGACATTCACTCTG 59.077 45.833 10.88 0.00 33.75 3.35
991 1108 4.903355 CTCTGAGCGAGCGAGCGG 62.903 72.222 0.00 0.00 43.00 5.52
1090 1207 3.625897 CTCTGTGGTGGGCGGTCA 61.626 66.667 0.00 0.00 0.00 4.02
1091 1208 3.164977 TCTGTGGTGGGCGGTCAA 61.165 61.111 0.00 0.00 0.00 3.18
1193 1310 0.820226 TTCCTGAGAGGCGACATCAG 59.180 55.000 14.83 14.83 42.75 2.90
1197 1314 0.614697 TGAGAGGCGACATCAGGGAA 60.615 55.000 0.00 0.00 0.00 3.97
1296 1413 3.374402 CTCCTCCACCGCGTCACT 61.374 66.667 4.92 0.00 0.00 3.41
1350 1468 2.216898 CCCGCTTTCTTCATCAGATCC 58.783 52.381 0.00 0.00 0.00 3.36
1354 1472 3.064545 CGCTTTCTTCATCAGATCCCAAC 59.935 47.826 0.00 0.00 0.00 3.77
1357 1475 5.526846 GCTTTCTTCATCAGATCCCAACTAG 59.473 44.000 0.00 0.00 0.00 2.57
1365 1483 7.126061 TCATCAGATCCCAACTAGAAGAACTA 58.874 38.462 0.00 0.00 0.00 2.24
1366 1484 6.777213 TCAGATCCCAACTAGAAGAACTAC 57.223 41.667 0.00 0.00 0.00 2.73
1367 1485 6.494952 TCAGATCCCAACTAGAAGAACTACT 58.505 40.000 0.00 0.00 0.00 2.57
1368 1486 6.378564 TCAGATCCCAACTAGAAGAACTACTG 59.621 42.308 0.00 0.00 0.00 2.74
1369 1487 6.153680 CAGATCCCAACTAGAAGAACTACTGT 59.846 42.308 0.00 0.00 0.00 3.55
1393 1898 0.246635 TTCCTAGTTGCGTGCTCCTC 59.753 55.000 0.00 0.00 0.00 3.71
1399 1904 0.674895 GTTGCGTGCTCCTCCTGATT 60.675 55.000 0.00 0.00 0.00 2.57
1401 1906 0.036732 TGCGTGCTCCTCCTGATTTT 59.963 50.000 0.00 0.00 0.00 1.82
1402 1907 1.168714 GCGTGCTCCTCCTGATTTTT 58.831 50.000 0.00 0.00 0.00 1.94
1444 2047 5.712217 TTACACTCTTTGTTTCAGTGTCG 57.288 39.130 7.20 0.00 46.24 4.35
1454 2057 0.669619 TTCAGTGTCGTGTTCGGCTA 59.330 50.000 0.00 0.00 42.59 3.93
1479 2082 7.750229 TTCTTATCATCTGTTGCTGAAAACT 57.250 32.000 0.00 0.00 0.00 2.66
1490 2093 2.155279 GCTGAAAACTCAGGGAAGGTC 58.845 52.381 4.42 0.00 38.14 3.85
1511 2114 0.108709 CATTCACATGGTTTGGGCCG 60.109 55.000 0.00 0.00 0.00 6.13
1559 2162 0.603975 AGCTGGTTCGGCAAGTTCTC 60.604 55.000 1.41 0.00 38.37 2.87
1571 2174 4.262976 CGGCAAGTTCTCGCAAATAAATTC 59.737 41.667 0.00 0.00 0.00 2.17
1609 2212 3.512516 GCTAGCCCGCCTTGCAAG 61.513 66.667 19.93 19.93 41.19 4.01
1713 2316 9.853177 ATGCAGAAAAGCTAAAGGTAATAGTAT 57.147 29.630 0.00 0.00 34.99 2.12
1798 2437 8.240883 ACTAGTATTTGCTAAAAGAACTCGTG 57.759 34.615 0.00 0.00 31.44 4.35
1816 2455 3.805422 TCGTGTTTACACAGTGTGATTCC 59.195 43.478 29.58 14.07 46.75 3.01
1948 2595 5.854010 TGCTCCCTATAAGGCTATAATCG 57.146 43.478 0.00 0.00 32.73 3.34
1970 2617 5.524646 TCGGTAATTTCGTATCCAATGGAAC 59.475 40.000 5.89 5.35 34.34 3.62
1974 2621 7.496591 GGTAATTTCGTATCCAATGGAACTGTA 59.503 37.037 5.89 0.00 34.34 2.74
1982 2629 5.798125 TCCAATGGAACTGTAAATTTGCA 57.202 34.783 8.73 8.73 0.00 4.08
2048 2696 7.745620 TCAAAAAGTCCTTTGGAGAAGATAC 57.254 36.000 0.00 0.00 37.00 2.24
2155 2808 5.882000 CCTTTGTGATGGATATGTCAGACAA 59.118 40.000 7.50 0.00 0.00 3.18
2181 2837 6.698766 CCGAGGCAAAATACTAGTACGTTTAT 59.301 38.462 4.31 0.00 0.00 1.40
2200 2856 8.559536 ACGTTTATTCAATACATCACATGATCC 58.440 33.333 0.00 0.00 31.21 3.36
2229 2885 8.308207 GGAAATTTAACTAACAGGGCACAATTA 58.692 33.333 0.00 0.00 0.00 1.40
2230 2886 9.353999 GAAATTTAACTAACAGGGCACAATTAG 57.646 33.333 7.51 7.51 0.00 1.73
2231 2887 5.890424 TTAACTAACAGGGCACAATTAGC 57.110 39.130 8.70 0.00 0.00 3.09
2232 2888 2.356135 ACTAACAGGGCACAATTAGCG 58.644 47.619 8.70 0.00 0.00 4.26
2233 2889 1.670811 CTAACAGGGCACAATTAGCGG 59.329 52.381 0.00 0.00 0.00 5.52
2235 2891 2.045708 CAGGGCACAATTAGCGGCA 61.046 57.895 1.45 0.00 0.00 5.69
2236 2892 1.304052 AGGGCACAATTAGCGGCAA 60.304 52.632 1.45 0.00 0.00 4.52
2237 2893 1.153842 GGGCACAATTAGCGGCAAC 60.154 57.895 1.45 0.00 0.00 4.17
2238 2894 1.153842 GGCACAATTAGCGGCAACC 60.154 57.895 1.45 0.00 0.00 3.77
2239 2895 1.595093 GGCACAATTAGCGGCAACCT 61.595 55.000 1.45 0.00 0.00 3.50
2240 2896 1.091537 GCACAATTAGCGGCAACCTA 58.908 50.000 1.45 0.00 0.00 3.08
2241 2897 1.676006 GCACAATTAGCGGCAACCTAT 59.324 47.619 1.45 0.00 0.00 2.57
2242 2898 2.099098 GCACAATTAGCGGCAACCTATT 59.901 45.455 1.45 0.00 0.00 1.73
2243 2899 3.314080 GCACAATTAGCGGCAACCTATTA 59.686 43.478 1.45 0.00 0.00 0.98
2244 2900 4.788521 GCACAATTAGCGGCAACCTATTAC 60.789 45.833 1.45 0.00 0.00 1.89
2245 2901 4.574828 CACAATTAGCGGCAACCTATTACT 59.425 41.667 1.45 0.00 0.00 2.24
2246 2902 5.756347 CACAATTAGCGGCAACCTATTACTA 59.244 40.000 1.45 0.00 0.00 1.82
2370 3026 6.118170 CAGTGAACTAATTGACAGATGGGAT 58.882 40.000 0.00 0.00 0.00 3.85
2388 3044 6.126863 TGGGATAATTCAGTCACTGTTTCT 57.873 37.500 4.28 0.00 32.61 2.52
2442 3098 5.899547 GGAGTTCCAAAATTTATCAGGGGAT 59.100 40.000 0.00 0.00 35.23 3.85
2568 3224 1.067582 CATCCCGGGCTTCTCGTAC 59.932 63.158 18.49 0.00 0.00 3.67
2614 3270 6.485830 TGGTTCCCAACAAACAAATATCAA 57.514 33.333 0.00 0.00 0.00 2.57
2615 3271 7.072263 TGGTTCCCAACAAACAAATATCAAT 57.928 32.000 0.00 0.00 0.00 2.57
2616 3272 7.512992 TGGTTCCCAACAAACAAATATCAATT 58.487 30.769 0.00 0.00 0.00 2.32
2732 3388 2.750166 TGCCGACAGAAAACAACAGAAA 59.250 40.909 0.00 0.00 0.00 2.52
2762 3418 6.831976 AGGCTATAAATACAGAGGTCAAAGG 58.168 40.000 0.00 0.00 0.00 3.11
2835 3491 1.067283 ACTGACAAGGACGATCTGCTG 60.067 52.381 0.00 0.00 0.00 4.41
2867 3523 7.764443 GCTACTAGAGTCAAACATGGATTACAA 59.236 37.037 0.00 0.00 0.00 2.41
2868 3524 9.307121 CTACTAGAGTCAAACATGGATTACAAG 57.693 37.037 0.00 0.00 0.00 3.16
2875 3531 3.668141 ACATGGATTACAAGGATGCCA 57.332 42.857 0.00 0.00 0.00 4.92
2919 3575 4.250464 TGACCGTGGAAGATGTAATTGAC 58.750 43.478 0.00 0.00 0.00 3.18
2986 3642 1.580845 GCTCACATGGACAGTGGTGC 61.581 60.000 0.00 0.00 37.58 5.01
3072 3728 6.368791 GGAAGAACAAACCAGATTTAAATGGC 59.631 38.462 5.17 0.00 40.45 4.40
3110 3766 2.688507 TGTGAGTACTTGCTAGCTTGC 58.311 47.619 17.23 13.56 0.00 4.01
3112 3768 1.902508 TGAGTACTTGCTAGCTTGCCT 59.097 47.619 17.57 6.63 0.00 4.75
3115 3771 1.734465 GTACTTGCTAGCTTGCCTGTG 59.266 52.381 17.57 7.34 0.00 3.66
3166 4063 6.571150 GCAAGGTTCATAGCTTTTGATTCTGT 60.571 38.462 0.00 0.00 39.98 3.41
3268 4165 0.322322 ACCGCCGGACATACAAGAAA 59.678 50.000 11.71 0.00 0.00 2.52
3329 4226 1.510623 GCGCTGCAACTCATGTTCG 60.511 57.895 0.00 0.00 33.52 3.95
3345 4242 4.373116 CGTCCACCGTGACCCTGG 62.373 72.222 0.00 0.00 31.35 4.45
3542 4439 1.630244 CTCTTTTGAGCTGTCGCCGG 61.630 60.000 0.00 0.00 39.99 6.13
3633 4530 2.216898 GCTCTGAATCGGGGATCAAAG 58.783 52.381 0.00 0.00 0.00 2.77
3680 4577 5.844004 TGTCAAAGAAAGTACTCCTCTGTC 58.156 41.667 7.93 0.35 0.00 3.51
3751 4652 6.325545 TCTTATATTTCTTTACGGAGGGAGCA 59.674 38.462 0.00 0.00 0.00 4.26
3802 4703 6.073003 GGATAGTGTTTTCAGACAGTCCTTTG 60.073 42.308 0.00 0.00 35.03 2.77
3848 4749 3.755378 AGTTGAATCCTGAATCACAGCAC 59.245 43.478 0.00 0.00 44.52 4.40
3995 4896 6.588719 TTGGCTTAATTTGAGCATAGTGTT 57.411 33.333 14.29 0.00 41.89 3.32
3996 4897 6.588719 TGGCTTAATTTGAGCATAGTGTTT 57.411 33.333 14.29 0.00 41.89 2.83
4039 4940 2.238144 AGAGCCATCTTAGCTTCAAGCA 59.762 45.455 13.10 0.00 41.75 3.91
4045 4946 4.352039 CATCTTAGCTTCAAGCAATGCAG 58.648 43.478 13.10 0.00 45.56 4.41
4065 4966 4.118410 CAGAGTTCTGACCTATGCATGTC 58.882 47.826 10.16 9.85 46.59 3.06
4128 5029 0.546122 ATGCGTTGGAGATGCCCTTA 59.454 50.000 0.00 0.00 39.64 2.69
4140 5041 5.654209 GGAGATGCCCTTAGAAAACATTTCT 59.346 40.000 9.97 9.97 0.00 2.52
4152 5053 7.123355 AGAAAACATTTCTGGGTTGAATTCA 57.877 32.000 3.38 3.38 0.00 2.57
4163 5064 3.488047 GGGTTGAATTCACTCGCATCATG 60.488 47.826 7.89 0.00 0.00 3.07
4166 5067 1.002033 GAATTCACTCGCATCATGCCC 60.002 52.381 3.38 0.00 41.12 5.36
4168 5069 1.913951 TTCACTCGCATCATGCCCCT 61.914 55.000 3.38 0.00 41.12 4.79
4173 5074 2.371841 ACTCGCATCATGCCCCTAAATA 59.628 45.455 3.38 0.00 41.12 1.40
4174 5075 3.009473 ACTCGCATCATGCCCCTAAATAT 59.991 43.478 3.38 0.00 41.12 1.28
4205 5106 1.539388 GTGAATGAACATCGTGGGCAA 59.461 47.619 0.00 0.00 0.00 4.52
4211 5112 3.006940 TGAACATCGTGGGCAATAGAAC 58.993 45.455 0.00 0.00 0.00 3.01
4216 5117 1.295357 CGTGGGCAATAGAACGTGCA 61.295 55.000 0.00 0.00 42.74 4.57
4222 5123 1.394917 GCAATAGAACGTGCACTCCTG 59.605 52.381 16.19 1.10 40.58 3.86
4232 5133 1.889573 GCACTCCTGCCGGATAAGC 60.890 63.158 5.05 0.00 39.01 3.09
4233 5134 1.826024 CACTCCTGCCGGATAAGCT 59.174 57.895 5.05 0.00 39.01 3.74
4240 5141 1.377333 GCCGGATAAGCTATGCCCC 60.377 63.158 5.05 0.00 0.00 5.80
4245 5146 1.425448 GGATAAGCTATGCCCCCAAGT 59.575 52.381 0.00 0.00 0.00 3.16
4251 5152 1.754803 GCTATGCCCCCAAGTTTTACC 59.245 52.381 0.00 0.00 0.00 2.85
4261 5162 5.044698 CCCCCAAGTTTTACCTCCTTGTATA 60.045 44.000 0.00 0.00 35.02 1.47
4262 5163 6.486941 CCCCAAGTTTTACCTCCTTGTATAA 58.513 40.000 0.00 0.00 35.02 0.98
4264 5165 7.068226 CCCCAAGTTTTACCTCCTTGTATAATG 59.932 40.741 0.00 0.00 35.02 1.90
4265 5166 7.068226 CCCAAGTTTTACCTCCTTGTATAATGG 59.932 40.741 0.00 0.00 35.02 3.16
4266 5167 7.614192 CCAAGTTTTACCTCCTTGTATAATGGT 59.386 37.037 0.00 0.00 35.02 3.55
4267 5168 9.675464 CAAGTTTTACCTCCTTGTATAATGGTA 57.325 33.333 0.00 0.00 32.76 3.25
4270 5171 9.676861 GTTTTACCTCCTTGTATAATGGTAAGT 57.323 33.333 0.00 0.00 39.95 2.24
4274 5175 8.562949 ACCTCCTTGTATAATGGTAAGTATGT 57.437 34.615 0.00 0.00 0.00 2.29
4275 5176 8.429641 ACCTCCTTGTATAATGGTAAGTATGTG 58.570 37.037 0.00 0.00 0.00 3.21
4329 5262 1.068474 CACGCAACCTAAGAACCTCG 58.932 55.000 0.00 0.00 0.00 4.63
4334 5267 4.201990 ACGCAACCTAAGAACCTCGTATAG 60.202 45.833 0.00 0.00 0.00 1.31
4340 5273 7.893124 ACCTAAGAACCTCGTATAGAATCAA 57.107 36.000 0.00 0.00 0.00 2.57
4379 5312 5.691754 CAGGAACAAAAACCTCAACATTAGC 59.308 40.000 0.00 0.00 33.91 3.09
4381 5314 6.041979 AGGAACAAAAACCTCAACATTAGCAT 59.958 34.615 0.00 0.00 0.00 3.79
4388 5321 7.524717 AAACCTCAACATTAGCATAACACTT 57.475 32.000 0.00 0.00 0.00 3.16
4445 5378 4.339814 TCACCAACCCAAATCACTGTTTAC 59.660 41.667 0.00 0.00 0.00 2.01
4519 5453 6.968904 GCATAAAAATGTGTACATGGTCTCAG 59.031 38.462 0.00 0.00 36.56 3.35
4597 5554 7.639113 ACAACATAAAGAAAGTTGACCTCAA 57.361 32.000 11.02 0.00 43.93 3.02
4609 5566 8.747538 AAAGTTGACCTCAAGTTATTGTTACT 57.252 30.769 8.25 0.00 45.71 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 9.444600 ACTTTAGAAAGTGACACTGAAAAACTA 57.555 29.630 9.33 4.61 46.80 2.24
5 6 8.336801 ACTTTAGAAAGTGACACTGAAAAACT 57.663 30.769 9.33 5.49 46.80 2.66
36 37 9.844790 CTATGCAAAAAGACTATTGACAAATCA 57.155 29.630 0.00 0.00 0.00 2.57
37 38 8.801913 GCTATGCAAAAAGACTATTGACAAATC 58.198 33.333 0.00 0.00 0.00 2.17
38 39 8.306038 TGCTATGCAAAAAGACTATTGACAAAT 58.694 29.630 0.00 0.00 34.76 2.32
39 40 7.656412 TGCTATGCAAAAAGACTATTGACAAA 58.344 30.769 0.00 0.00 34.76 2.83
40 41 7.213216 TGCTATGCAAAAAGACTATTGACAA 57.787 32.000 0.00 0.00 34.76 3.18
41 42 6.816134 TGCTATGCAAAAAGACTATTGACA 57.184 33.333 0.00 3.88 34.76 3.58
62 63 2.028748 ACACAAGGCTCCAATGATTTGC 60.029 45.455 0.00 0.00 0.00 3.68
70 71 2.050144 AGAAGAGACACAAGGCTCCAA 58.950 47.619 0.00 0.00 0.00 3.53
71 72 1.722034 AGAAGAGACACAAGGCTCCA 58.278 50.000 0.00 0.00 0.00 3.86
79 80 7.670364 TGAATGATTACTGAAGAAGAGACACA 58.330 34.615 0.00 0.00 0.00 3.72
84 85 8.819015 CACTGATGAATGATTACTGAAGAAGAG 58.181 37.037 0.00 0.00 0.00 2.85
96 97 7.698506 AATGACTGAACACTGATGAATGATT 57.301 32.000 0.00 0.00 0.00 2.57
98 99 7.308770 GGAAAATGACTGAACACTGATGAATGA 60.309 37.037 0.00 0.00 0.00 2.57
140 141 5.819379 TCATCTCATTTGTATCAAGGCAGAC 59.181 40.000 0.00 0.00 0.00 3.51
155 216 6.590068 CACCTAGATCAAACCTCATCTCATT 58.410 40.000 0.00 0.00 31.57 2.57
176 237 0.037232 GACAGTGACCCTACAGCACC 60.037 60.000 0.00 0.00 33.14 5.01
179 240 1.276421 ACATGACAGTGACCCTACAGC 59.724 52.381 0.00 0.00 0.00 4.40
182 243 1.899814 TCCACATGACAGTGACCCTAC 59.100 52.381 0.00 0.00 42.05 3.18
183 244 1.899814 GTCCACATGACAGTGACCCTA 59.100 52.381 0.00 0.00 43.85 3.53
186 247 0.321653 GGGTCCACATGACAGTGACC 60.322 60.000 0.00 7.45 46.38 4.02
187 248 0.670546 CGGGTCCACATGACAGTGAC 60.671 60.000 0.00 0.00 46.38 3.67
188 249 1.671166 CGGGTCCACATGACAGTGA 59.329 57.895 0.00 0.00 46.38 3.41
190 251 3.068881 CCGGGTCCACATGACAGT 58.931 61.111 0.00 0.00 46.38 3.55
191 252 2.436646 GCCGGGTCCACATGACAG 60.437 66.667 2.18 0.00 46.38 3.51
192 253 4.028490 GGCCGGGTCCACATGACA 62.028 66.667 2.18 0.00 46.38 3.58
193 254 4.796495 GGGCCGGGTCCACATGAC 62.796 72.222 14.16 0.00 43.67 3.06
201 262 4.796495 GACATGTGGGGCCGGGTC 62.796 72.222 1.15 0.00 0.00 4.46
203 264 4.127744 ATGACATGTGGGGCCGGG 62.128 66.667 1.15 0.00 0.00 5.73
204 265 2.516930 GATGACATGTGGGGCCGG 60.517 66.667 1.15 0.00 0.00 6.13
205 266 2.516930 GGATGACATGTGGGGCCG 60.517 66.667 1.15 0.00 0.00 6.13
206 267 2.516930 CGGATGACATGTGGGGCC 60.517 66.667 1.15 0.00 0.00 5.80
207 268 3.211963 GCGGATGACATGTGGGGC 61.212 66.667 1.15 0.00 0.00 5.80
208 269 2.114670 GTGCGGATGACATGTGGGG 61.115 63.158 1.15 0.00 0.00 4.96
209 270 0.177836 TAGTGCGGATGACATGTGGG 59.822 55.000 1.15 0.00 0.00 4.61
210 271 1.575244 CTAGTGCGGATGACATGTGG 58.425 55.000 1.15 0.00 0.00 4.17
211 272 0.933097 GCTAGTGCGGATGACATGTG 59.067 55.000 1.15 0.00 0.00 3.21
212 273 0.179073 GGCTAGTGCGGATGACATGT 60.179 55.000 0.00 0.00 40.82 3.21
213 274 0.179076 TGGCTAGTGCGGATGACATG 60.179 55.000 0.00 0.00 40.82 3.21
214 275 0.179073 GTGGCTAGTGCGGATGACAT 60.179 55.000 0.00 0.00 40.82 3.06
215 276 1.218047 GTGGCTAGTGCGGATGACA 59.782 57.895 0.00 0.00 40.82 3.58
216 277 1.878522 CGTGGCTAGTGCGGATGAC 60.879 63.158 0.00 0.00 40.82 3.06
240 301 1.663702 CGGCCCAACGATCGGATAC 60.664 63.158 20.98 4.50 35.47 2.24
241 302 2.732016 CGGCCCAACGATCGGATA 59.268 61.111 20.98 0.00 35.47 2.59
242 303 4.910585 GCGGCCCAACGATCGGAT 62.911 66.667 20.98 4.82 35.47 4.18
262 323 0.679640 TCACCAAATCCATGGGCGAC 60.680 55.000 13.02 0.00 45.18 5.19
263 324 0.394216 CTCACCAAATCCATGGGCGA 60.394 55.000 13.02 0.00 45.18 5.54
264 325 0.394216 TCTCACCAAATCCATGGGCG 60.394 55.000 13.02 0.00 45.18 6.13
310 371 0.682209 AGCCCATAGCCAAACAGCAG 60.682 55.000 0.00 0.00 45.47 4.24
315 376 2.159435 CGTGTAAAGCCCATAGCCAAAC 60.159 50.000 0.00 0.00 45.47 2.93
316 377 2.088423 CGTGTAAAGCCCATAGCCAAA 58.912 47.619 0.00 0.00 45.47 3.28
317 378 1.279558 TCGTGTAAAGCCCATAGCCAA 59.720 47.619 0.00 0.00 45.47 4.52
318 379 0.906066 TCGTGTAAAGCCCATAGCCA 59.094 50.000 0.00 0.00 45.47 4.75
319 380 1.583054 CTCGTGTAAAGCCCATAGCC 58.417 55.000 0.00 0.00 45.47 3.93
320 381 0.938008 GCTCGTGTAAAGCCCATAGC 59.062 55.000 0.00 0.00 44.25 2.97
321 382 1.209128 CGCTCGTGTAAAGCCCATAG 58.791 55.000 0.00 0.00 36.36 2.23
322 383 0.808453 GCGCTCGTGTAAAGCCCATA 60.808 55.000 0.00 0.00 36.36 2.74
323 384 2.106683 GCGCTCGTGTAAAGCCCAT 61.107 57.895 0.00 0.00 36.36 4.00
324 385 2.740826 GCGCTCGTGTAAAGCCCA 60.741 61.111 0.00 0.00 36.36 5.36
325 386 3.849953 CGCGCTCGTGTAAAGCCC 61.850 66.667 5.56 0.00 36.36 5.19
326 387 4.500568 GCGCGCTCGTGTAAAGCC 62.501 66.667 26.67 0.00 36.36 4.35
327 388 4.828341 CGCGCGCTCGTGTAAAGC 62.828 66.667 30.48 0.00 40.97 3.51
328 389 4.191485 CCGCGCGCTCGTGTAAAG 62.191 66.667 30.48 9.83 44.08 1.85
360 421 2.345760 CGCAGCAGCCAAGGGAAAT 61.346 57.895 0.00 0.00 37.52 2.17
368 429 0.740868 GTAATCAGACGCAGCAGCCA 60.741 55.000 0.00 0.00 37.52 4.75
369 430 0.740868 TGTAATCAGACGCAGCAGCC 60.741 55.000 0.00 0.00 37.52 4.85
370 431 0.371645 GTGTAATCAGACGCAGCAGC 59.628 55.000 0.00 0.00 37.42 5.25
371 432 1.923204 GAGTGTAATCAGACGCAGCAG 59.077 52.381 0.00 0.00 32.03 4.24
372 433 1.546029 AGAGTGTAATCAGACGCAGCA 59.454 47.619 0.00 0.00 32.03 4.41
373 434 1.923204 CAGAGTGTAATCAGACGCAGC 59.077 52.381 0.00 0.00 32.03 5.25
374 435 3.494045 TCAGAGTGTAATCAGACGCAG 57.506 47.619 0.00 0.00 32.03 5.18
375 436 4.424626 GAATCAGAGTGTAATCAGACGCA 58.575 43.478 0.00 0.00 32.03 5.24
376 437 3.799420 GGAATCAGAGTGTAATCAGACGC 59.201 47.826 0.00 0.00 0.00 5.19
377 438 4.363999 GGGAATCAGAGTGTAATCAGACG 58.636 47.826 0.00 0.00 0.00 4.18
378 439 4.407296 AGGGGAATCAGAGTGTAATCAGAC 59.593 45.833 0.00 0.00 0.00 3.51
379 440 4.406972 CAGGGGAATCAGAGTGTAATCAGA 59.593 45.833 0.00 0.00 0.00 3.27
380 441 4.701765 CAGGGGAATCAGAGTGTAATCAG 58.298 47.826 0.00 0.00 0.00 2.90
381 442 3.118261 GCAGGGGAATCAGAGTGTAATCA 60.118 47.826 0.00 0.00 0.00 2.57
382 443 3.471680 GCAGGGGAATCAGAGTGTAATC 58.528 50.000 0.00 0.00 0.00 1.75
383 444 2.173569 GGCAGGGGAATCAGAGTGTAAT 59.826 50.000 0.00 0.00 0.00 1.89
384 445 1.559682 GGCAGGGGAATCAGAGTGTAA 59.440 52.381 0.00 0.00 0.00 2.41
385 446 1.204146 GGCAGGGGAATCAGAGTGTA 58.796 55.000 0.00 0.00 0.00 2.90
386 447 1.903877 CGGCAGGGGAATCAGAGTGT 61.904 60.000 0.00 0.00 0.00 3.55
387 448 1.153289 CGGCAGGGGAATCAGAGTG 60.153 63.158 0.00 0.00 0.00 3.51
388 449 3.036429 GCGGCAGGGGAATCAGAGT 62.036 63.158 0.00 0.00 0.00 3.24
389 450 2.203126 GCGGCAGGGGAATCAGAG 60.203 66.667 0.00 0.00 0.00 3.35
390 451 3.797353 GGCGGCAGGGGAATCAGA 61.797 66.667 3.07 0.00 0.00 3.27
391 452 2.916527 AATGGCGGCAGGGGAATCAG 62.917 60.000 19.29 0.00 0.00 2.90
392 453 2.995077 AATGGCGGCAGGGGAATCA 61.995 57.895 19.29 0.00 0.00 2.57
413 474 4.767255 GAGTGCAGACCTGGCCGG 62.767 72.222 3.88 3.88 39.35 6.13
414 475 3.699894 AGAGTGCAGACCTGGCCG 61.700 66.667 0.00 0.00 0.00 6.13
415 476 2.046507 CAGAGTGCAGACCTGGCC 60.047 66.667 0.00 0.00 0.00 5.36
497 564 2.408565 GACATGGGGAGTATCAGGGAA 58.591 52.381 0.00 0.00 36.25 3.97
603 670 5.696724 CCATGGATTAACTAGTGAACGATCC 59.303 44.000 5.56 0.00 33.78 3.36
613 680 6.223852 ACGTCATTAGCCATGGATTAACTAG 58.776 40.000 18.40 3.21 33.07 2.57
638 705 1.741706 CACTCTTAGTACGAGGCGGAA 59.258 52.381 8.40 0.00 32.83 4.30
642 709 1.404748 GACCCACTCTTAGTACGAGGC 59.595 57.143 8.40 0.00 32.83 4.70
654 721 2.358737 CCAACCGCAGACCCACTC 60.359 66.667 0.00 0.00 0.00 3.51
655 722 3.168528 ACCAACCGCAGACCCACT 61.169 61.111 0.00 0.00 0.00 4.00
656 723 2.978010 CACCAACCGCAGACCCAC 60.978 66.667 0.00 0.00 0.00 4.61
673 740 3.380637 TGATCCGTAAGAACACTAGGCTC 59.619 47.826 0.00 0.00 43.02 4.70
674 741 3.362706 TGATCCGTAAGAACACTAGGCT 58.637 45.455 0.00 0.00 43.02 4.58
677 744 8.928270 AATAAACTGATCCGTAAGAACACTAG 57.072 34.615 0.00 0.00 43.02 2.57
678 745 9.715121 AAAATAAACTGATCCGTAAGAACACTA 57.285 29.630 0.00 0.00 43.02 2.74
679 746 8.504005 CAAAATAAACTGATCCGTAAGAACACT 58.496 33.333 0.00 0.00 43.02 3.55
680 747 7.270579 GCAAAATAAACTGATCCGTAAGAACAC 59.729 37.037 0.00 0.00 43.02 3.32
682 749 7.527457 AGCAAAATAAACTGATCCGTAAGAAC 58.473 34.615 0.00 0.00 43.02 3.01
683 750 7.681939 AGCAAAATAAACTGATCCGTAAGAA 57.318 32.000 0.00 0.00 43.02 2.52
685 752 7.280205 AGGTAGCAAAATAAACTGATCCGTAAG 59.720 37.037 0.00 0.00 0.00 2.34
686 753 7.107542 AGGTAGCAAAATAAACTGATCCGTAA 58.892 34.615 0.00 0.00 0.00 3.18
688 755 5.497474 AGGTAGCAAAATAAACTGATCCGT 58.503 37.500 0.00 0.00 0.00 4.69
690 757 7.988028 AGTAGAGGTAGCAAAATAAACTGATCC 59.012 37.037 0.00 0.00 0.00 3.36
691 758 8.950208 AGTAGAGGTAGCAAAATAAACTGATC 57.050 34.615 0.00 0.00 0.00 2.92
692 759 7.988028 GGAGTAGAGGTAGCAAAATAAACTGAT 59.012 37.037 0.00 0.00 0.00 2.90
693 760 7.038587 TGGAGTAGAGGTAGCAAAATAAACTGA 60.039 37.037 0.00 0.00 0.00 3.41
694 761 7.064728 GTGGAGTAGAGGTAGCAAAATAAACTG 59.935 40.741 0.00 0.00 0.00 3.16
695 762 7.038231 AGTGGAGTAGAGGTAGCAAAATAAACT 60.038 37.037 0.00 0.00 0.00 2.66
696 763 7.064728 CAGTGGAGTAGAGGTAGCAAAATAAAC 59.935 40.741 0.00 0.00 0.00 2.01
697 764 7.103641 CAGTGGAGTAGAGGTAGCAAAATAAA 58.896 38.462 0.00 0.00 0.00 1.40
698 765 6.212791 ACAGTGGAGTAGAGGTAGCAAAATAA 59.787 38.462 0.00 0.00 0.00 1.40
699 766 5.720041 ACAGTGGAGTAGAGGTAGCAAAATA 59.280 40.000 0.00 0.00 0.00 1.40
700 767 4.532521 ACAGTGGAGTAGAGGTAGCAAAAT 59.467 41.667 0.00 0.00 0.00 1.82
701 768 3.901844 ACAGTGGAGTAGAGGTAGCAAAA 59.098 43.478 0.00 0.00 0.00 2.44
702 769 3.258372 CACAGTGGAGTAGAGGTAGCAAA 59.742 47.826 0.00 0.00 0.00 3.68
703 770 2.826128 CACAGTGGAGTAGAGGTAGCAA 59.174 50.000 0.00 0.00 0.00 3.91
704 771 2.447443 CACAGTGGAGTAGAGGTAGCA 58.553 52.381 0.00 0.00 0.00 3.49
705 772 1.751924 CCACAGTGGAGTAGAGGTAGC 59.248 57.143 15.35 0.00 40.96 3.58
706 773 2.755655 CACCACAGTGGAGTAGAGGTAG 59.244 54.545 27.39 0.00 40.96 3.18
707 774 2.377531 TCACCACAGTGGAGTAGAGGTA 59.622 50.000 27.39 0.00 44.64 3.08
708 775 1.147191 TCACCACAGTGGAGTAGAGGT 59.853 52.381 27.39 0.00 44.64 3.85
709 776 1.924731 TCACCACAGTGGAGTAGAGG 58.075 55.000 27.39 6.33 44.64 3.69
710 777 3.360867 AGATCACCACAGTGGAGTAGAG 58.639 50.000 27.39 8.33 44.64 2.43
711 778 3.458044 AGATCACCACAGTGGAGTAGA 57.542 47.619 27.39 17.02 44.64 2.59
712 779 3.511540 TCAAGATCACCACAGTGGAGTAG 59.488 47.826 27.39 12.43 44.64 2.57
713 780 3.506398 TCAAGATCACCACAGTGGAGTA 58.494 45.455 27.39 10.91 44.64 2.59
714 781 2.301296 CTCAAGATCACCACAGTGGAGT 59.699 50.000 27.39 11.01 44.64 3.85
715 782 2.564504 TCTCAAGATCACCACAGTGGAG 59.435 50.000 27.39 18.87 44.64 3.86
718 785 4.108336 CGTATCTCAAGATCACCACAGTG 58.892 47.826 0.00 0.00 46.00 3.66
720 787 3.381590 TCCGTATCTCAAGATCACCACAG 59.618 47.826 0.00 0.00 36.05 3.66
725 792 5.263968 TCCTTTCCGTATCTCAAGATCAC 57.736 43.478 0.00 0.00 36.05 3.06
754 821 9.245962 CCGAACGAGTCACTATTATTTTTCTAT 57.754 33.333 0.00 0.00 0.00 1.98
755 822 8.461222 TCCGAACGAGTCACTATTATTTTTCTA 58.539 33.333 0.00 0.00 0.00 2.10
756 823 7.318141 TCCGAACGAGTCACTATTATTTTTCT 58.682 34.615 0.00 0.00 0.00 2.52
757 824 7.515957 TCCGAACGAGTCACTATTATTTTTC 57.484 36.000 0.00 0.00 0.00 2.29
761 837 6.807230 GCATATCCGAACGAGTCACTATTATT 59.193 38.462 0.00 0.00 0.00 1.40
763 839 5.239963 TGCATATCCGAACGAGTCACTATTA 59.760 40.000 0.00 0.00 0.00 0.98
766 842 2.946990 TGCATATCCGAACGAGTCACTA 59.053 45.455 0.00 0.00 0.00 2.74
799 875 1.251251 GTTGCAGGCACAGAAAGGAT 58.749 50.000 0.00 0.00 0.00 3.24
867 971 7.173907 CCATAACCCTGTAATCAAATAGAGCAG 59.826 40.741 0.00 0.00 0.00 4.24
868 972 6.998074 CCATAACCCTGTAATCAAATAGAGCA 59.002 38.462 0.00 0.00 0.00 4.26
872 976 8.924511 ATGACCATAACCCTGTAATCAAATAG 57.075 34.615 0.00 0.00 0.00 1.73
881 985 5.290493 GTCATGATGACCATAACCCTGTA 57.710 43.478 14.48 0.00 41.37 2.74
935 1048 8.807118 TGAAGACAAAGAGTGTAGATTGTAGAT 58.193 33.333 0.00 0.00 41.96 1.98
936 1049 8.178313 TGAAGACAAAGAGTGTAGATTGTAGA 57.822 34.615 0.00 0.00 41.96 2.59
937 1050 8.085296 ACTGAAGACAAAGAGTGTAGATTGTAG 58.915 37.037 0.00 0.00 41.96 2.74
938 1051 7.952671 ACTGAAGACAAAGAGTGTAGATTGTA 58.047 34.615 0.00 0.00 41.96 2.41
939 1052 6.821388 ACTGAAGACAAAGAGTGTAGATTGT 58.179 36.000 0.00 0.00 41.96 2.71
940 1053 7.116090 CAGACTGAAGACAAAGAGTGTAGATTG 59.884 40.741 0.00 0.00 41.96 2.67
941 1054 7.014711 TCAGACTGAAGACAAAGAGTGTAGATT 59.985 37.037 1.64 0.00 41.96 2.40
953 1066 5.069648 AGAGTGAATGTCAGACTGAAGACAA 59.930 40.000 6.76 0.00 46.62 3.18
991 1108 1.147153 CTTCCTCCATTCCTCCGCC 59.853 63.158 0.00 0.00 0.00 6.13
1090 1207 0.534412 CAGACCCACTCGAGCATCTT 59.466 55.000 13.61 0.00 0.00 2.40
1091 1208 1.326213 CCAGACCCACTCGAGCATCT 61.326 60.000 13.61 7.41 0.00 2.90
1167 1284 1.817209 GCCTCTCAGGAACCGGTAG 59.183 63.158 8.00 0.00 37.67 3.18
1174 1291 0.820226 CTGATGTCGCCTCTCAGGAA 59.180 55.000 0.00 0.00 37.67 3.36
1296 1413 1.140161 GTACATACCGTGCTCCGCA 59.860 57.895 0.00 0.00 35.60 5.69
1298 1415 4.724022 GGTACATACCGTGCTCCG 57.276 61.111 0.00 0.00 36.50 4.63
1332 1449 2.910199 TGGGATCTGATGAAGAAAGCG 58.090 47.619 0.00 0.00 38.79 4.68
1335 1452 6.874278 TCTAGTTGGGATCTGATGAAGAAA 57.126 37.500 0.00 0.00 38.79 2.52
1337 1454 6.197903 TCTTCTAGTTGGGATCTGATGAAGA 58.802 40.000 0.00 2.06 39.94 2.87
1338 1455 6.477053 TCTTCTAGTTGGGATCTGATGAAG 57.523 41.667 0.00 0.00 0.00 3.02
1342 1460 7.069331 CAGTAGTTCTTCTAGTTGGGATCTGAT 59.931 40.741 0.00 0.00 30.60 2.90
1350 1468 9.575783 GAAAGATACAGTAGTTCTTCTAGTTGG 57.424 37.037 0.00 0.00 30.60 3.77
1357 1475 9.575783 CAACTAGGAAAGATACAGTAGTTCTTC 57.424 37.037 0.00 0.00 30.18 2.87
1365 1483 4.495422 CACGCAACTAGGAAAGATACAGT 58.505 43.478 0.00 0.00 0.00 3.55
1366 1484 3.307242 GCACGCAACTAGGAAAGATACAG 59.693 47.826 0.00 0.00 0.00 2.74
1367 1485 3.056107 AGCACGCAACTAGGAAAGATACA 60.056 43.478 0.00 0.00 0.00 2.29
1368 1486 3.522553 AGCACGCAACTAGGAAAGATAC 58.477 45.455 0.00 0.00 0.00 2.24
1369 1487 3.430374 GGAGCACGCAACTAGGAAAGATA 60.430 47.826 0.00 0.00 0.00 1.98
1402 1907 9.860650 AGTGTAATAACCTAATGGCATATCAAA 57.139 29.630 0.00 0.00 36.63 2.69
1403 1908 9.502091 GAGTGTAATAACCTAATGGCATATCAA 57.498 33.333 0.00 0.00 36.63 2.57
1404 1909 8.880244 AGAGTGTAATAACCTAATGGCATATCA 58.120 33.333 0.00 0.00 36.63 2.15
1407 1912 9.337396 CAAAGAGTGTAATAACCTAATGGCATA 57.663 33.333 0.00 0.00 36.63 3.14
1426 1931 3.596214 ACACGACACTGAAACAAAGAGT 58.404 40.909 0.00 0.00 0.00 3.24
1444 2047 5.986135 ACAGATGATAAGAATAGCCGAACAC 59.014 40.000 0.00 0.00 0.00 3.32
1454 2057 8.345724 AGTTTTCAGCAACAGATGATAAGAAT 57.654 30.769 0.00 0.00 0.00 2.40
1479 2082 2.619931 TGTGAATGAGACCTTCCCTGA 58.380 47.619 0.00 0.00 0.00 3.86
1490 2093 1.205417 GGCCCAAACCATGTGAATGAG 59.795 52.381 0.00 0.00 0.00 2.90
1559 2162 2.559998 AGTGGCCGAATTTATTTGCG 57.440 45.000 0.00 0.00 0.00 4.85
1571 2174 1.352114 TCGTTTTATCGAAGTGGCCG 58.648 50.000 0.00 0.00 36.89 6.13
1609 2212 1.092348 GAGTCCGCCAATAAACACCC 58.908 55.000 0.00 0.00 0.00 4.61
1631 2234 2.076863 CATTCTTCACCGTCAAGGACC 58.923 52.381 0.00 0.00 45.00 4.46
1798 2437 6.170506 TGGATAGGAATCACACTGTGTAAAC 58.829 40.000 13.89 5.70 34.79 2.01
1879 2520 4.156556 ACCTGATTTGACACCGAATTCATG 59.843 41.667 6.22 5.74 0.00 3.07
1882 2523 3.119849 CCACCTGATTTGACACCGAATTC 60.120 47.826 0.00 0.00 0.00 2.17
1948 2595 6.317893 ACAGTTCCATTGGATACGAAATTACC 59.682 38.462 6.15 0.00 42.51 2.85
1970 2617 5.858581 GTGGTAGCTTCTTGCAAATTTACAG 59.141 40.000 0.00 0.00 45.94 2.74
1974 2621 4.874970 CTGTGGTAGCTTCTTGCAAATTT 58.125 39.130 0.00 0.00 45.94 1.82
2103 2756 6.867519 TCCAACCAGTTGATAGAACTCATA 57.132 37.500 12.06 0.00 42.93 2.15
2107 2760 6.434340 GGAAATTCCAACCAGTTGATAGAACT 59.566 38.462 12.06 0.00 42.93 3.01
2111 2764 6.840780 AAGGAAATTCCAACCAGTTGATAG 57.159 37.500 15.21 0.00 42.93 2.08
2155 2808 3.445096 ACGTACTAGTATTTTGCCTCGGT 59.555 43.478 5.75 0.00 0.00 4.69
2181 2837 7.616528 TCCTAGGATCATGTGATGTATTGAA 57.383 36.000 7.62 0.00 34.37 2.69
2200 2856 6.657541 TGTGCCCTGTTAGTTAAATTTCCTAG 59.342 38.462 0.00 0.00 0.00 3.02
2219 2875 1.153842 GTTGCCGCTAATTGTGCCC 60.154 57.895 0.00 0.00 0.00 5.36
2229 2885 5.995565 TCATATAGTAATAGGTTGCCGCT 57.004 39.130 0.00 0.00 0.00 5.52
2230 2886 6.338146 TGATCATATAGTAATAGGTTGCCGC 58.662 40.000 0.00 0.00 0.00 6.53
2231 2887 8.656849 GTTTGATCATATAGTAATAGGTTGCCG 58.343 37.037 0.00 0.00 0.00 5.69
2232 2888 9.502091 TGTTTGATCATATAGTAATAGGTTGCC 57.498 33.333 0.00 0.00 0.00 4.52
2261 2917 9.411801 GAGAAATGGTTTGGTCTTTTTATCTTC 57.588 33.333 0.00 0.00 0.00 2.87
2272 2928 2.820197 GTCAGGGAGAAATGGTTTGGTC 59.180 50.000 0.00 0.00 0.00 4.02
2370 3026 6.353323 TCCAACAGAAACAGTGACTGAATTA 58.647 36.000 20.97 0.00 35.18 1.40
2388 3044 3.701205 TCAAGCTCTATTGCTCCAACA 57.299 42.857 0.00 0.00 43.24 3.33
2442 3098 3.120095 CGAATGCAGCTCTTGAAATGACA 60.120 43.478 0.00 0.00 0.00 3.58
2568 3224 8.850156 ACCAAATAATAAGGAAAATGAGGATCG 58.150 33.333 0.00 0.00 38.61 3.69
2592 3248 8.389779 AAATTGATATTTGTTTGTTGGGAACC 57.610 30.769 0.00 0.00 40.02 3.62
2614 3270 6.891361 TCTGGAACACATGAATCCACATAAAT 59.109 34.615 12.65 0.00 38.30 1.40
2615 3271 6.244654 TCTGGAACACATGAATCCACATAAA 58.755 36.000 12.65 0.00 38.30 1.40
2616 3272 5.814481 TCTGGAACACATGAATCCACATAA 58.186 37.500 12.65 0.86 38.30 1.90
2628 3284 6.713762 TTGAGAAAACATTCTGGAACACAT 57.286 33.333 0.00 0.00 0.00 3.21
2732 3388 7.510685 TGACCTCTGTATTTATAGCCTTCATCT 59.489 37.037 0.00 0.00 0.00 2.90
2762 3418 7.901861 TCTTCTCTATTATCCCCCTTAGAATCC 59.098 40.741 0.00 0.00 0.00 3.01
2835 3491 1.486211 TTGACTCTAGTAGCAGGCCC 58.514 55.000 0.00 0.00 0.00 5.80
2875 3531 1.202794 CCCCTTGCTTGTTTTGCCATT 60.203 47.619 0.00 0.00 0.00 3.16
2888 3544 2.438434 CCACGGTCATCCCCTTGC 60.438 66.667 0.00 0.00 0.00 4.01
2919 3575 4.386230 CGAAGTAGAACAACTTGCATTCG 58.614 43.478 0.00 0.00 39.78 3.34
2971 3627 1.352083 AGTAGCACCACTGTCCATGT 58.648 50.000 0.00 0.00 0.00 3.21
2986 3642 2.036475 ACTCCGGATGCATGCTTAGTAG 59.964 50.000 20.33 11.45 0.00 2.57
3072 3728 2.161609 CACAACTTTTAGGCGGCTAAGG 59.838 50.000 27.58 24.67 0.00 2.69
3110 3766 2.027745 AGTGCCTAACTCATGTCACAGG 60.028 50.000 0.00 0.00 31.64 4.00
3112 3768 3.769739 AAGTGCCTAACTCATGTCACA 57.230 42.857 0.00 0.00 38.56 3.58
3115 3771 8.768955 CAATTATCTAAGTGCCTAACTCATGTC 58.231 37.037 0.00 0.00 38.56 3.06
3166 4063 8.791675 TGTCATACACAATTAGCAGAAAAATGA 58.208 29.630 0.00 0.00 29.30 2.57
3268 4165 0.752009 TGACGCCTCCGAGCTCTATT 60.752 55.000 12.85 0.00 38.29 1.73
3329 4226 4.699522 GCCAGGGTCACGGTGGAC 62.700 72.222 8.50 5.35 37.06 4.02
3394 4291 2.768492 GCTTGCCTTGGAGATGCCG 61.768 63.158 0.00 0.00 40.66 5.69
3398 4295 1.210204 TCCCTGCTTGCCTTGGAGAT 61.210 55.000 0.00 0.00 0.00 2.75
3625 4522 4.341520 ACGGGTCTAGATACACTTTGATCC 59.658 45.833 0.00 0.00 32.10 3.36
3633 4530 5.657474 TCAAAATGACGGGTCTAGATACAC 58.343 41.667 0.00 0.00 0.00 2.90
3751 4652 1.432514 CTGCGTGCAGACAATGTAGT 58.567 50.000 16.69 0.00 46.30 2.73
3820 4721 5.819379 TGTGATTCAGGATTCAACTAGATGC 59.181 40.000 0.00 0.00 0.00 3.91
3848 4749 8.589335 ACTGAAGTAAAGTATATACGCATTGG 57.411 34.615 7.23 0.00 0.00 3.16
3933 4834 1.421268 ACACATTCTCTGGGCAGTGAA 59.579 47.619 0.00 0.00 42.70 3.18
3995 4896 4.757594 AGCAAACATTCTTCAGCACAAAA 58.242 34.783 0.00 0.00 0.00 2.44
3996 4897 4.389890 AGCAAACATTCTTCAGCACAAA 57.610 36.364 0.00 0.00 0.00 2.83
4039 4940 3.054875 TGCATAGGTCAGAACTCTGCATT 60.055 43.478 21.55 0.00 43.46 3.56
4045 4946 3.462021 GGACATGCATAGGTCAGAACTC 58.538 50.000 16.47 0.00 39.29 3.01
4128 5029 6.986231 GTGAATTCAACCCAGAAATGTTTTCT 59.014 34.615 10.35 0.00 0.00 2.52
4140 5041 2.083774 GATGCGAGTGAATTCAACCCA 58.916 47.619 10.35 6.70 0.00 4.51
4152 5053 0.546122 TTTAGGGGCATGATGCGAGT 59.454 50.000 11.75 0.27 46.21 4.18
4163 5064 4.026052 CCATGATCCCAATATTTAGGGGC 58.974 47.826 10.27 4.92 45.51 5.80
4166 5067 7.670979 TCATTCACCATGATCCCAATATTTAGG 59.329 37.037 0.00 0.00 36.94 2.69
4168 5069 8.859090 GTTCATTCACCATGATCCCAATATTTA 58.141 33.333 0.00 0.00 41.82 1.40
4173 5074 4.612401 TGTTCATTCACCATGATCCCAAT 58.388 39.130 0.00 0.00 41.82 3.16
4174 5075 4.044946 TGTTCATTCACCATGATCCCAA 57.955 40.909 0.00 0.00 41.82 4.12
4194 5095 1.327460 CACGTTCTATTGCCCACGATG 59.673 52.381 0.00 0.00 36.48 3.84
4222 5123 1.377333 GGGGCATAGCTTATCCGGC 60.377 63.158 0.00 0.00 0.00 6.13
4232 5133 3.288092 GAGGTAAAACTTGGGGGCATAG 58.712 50.000 0.00 0.00 0.00 2.23
4233 5134 2.024751 GGAGGTAAAACTTGGGGGCATA 60.025 50.000 0.00 0.00 0.00 3.14
4240 5141 7.614192 ACCATTATACAAGGAGGTAAAACTTGG 59.386 37.037 8.30 0.00 44.35 3.61
4251 5152 9.832445 AACACATACTTACCATTATACAAGGAG 57.168 33.333 0.00 0.00 0.00 3.69
4329 5262 9.503427 GTTTTGCAGGTAACATTGATTCTATAC 57.497 33.333 0.00 0.00 41.41 1.47
4334 5267 6.695292 CTGTTTTGCAGGTAACATTGATTC 57.305 37.500 10.34 0.00 41.42 2.52
4359 5292 8.200792 TGTTATGCTAATGTTGAGGTTTTTGTT 58.799 29.630 0.00 0.00 0.00 2.83
4455 5388 5.700832 TCATTACGTGCTCATCTTTGTTTCT 59.299 36.000 0.00 0.00 0.00 2.52
4519 5453 3.625938 CACTGCACTTCTTTTGCTCTTC 58.374 45.455 0.00 0.00 40.86 2.87
4526 5460 1.202336 GCACTGCACTGCACTTCTTTT 60.202 47.619 12.77 0.00 37.11 2.27
4580 5537 8.293699 ACAATAACTTGAGGTCAACTTTCTTT 57.706 30.769 0.00 0.00 36.20 2.52
4583 5540 8.837389 AGTAACAATAACTTGAGGTCAACTTTC 58.163 33.333 0.00 0.00 36.20 2.62


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.