Multiple sequence alignment - TraesCS2B01G531800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G531800 chr2B 100.000 3349 0 0 1 3349 727239639 727242987 0.000000e+00 6185.0
1 TraesCS2B01G531800 chr2B 92.907 719 42 6 2634 3349 727316028 727316740 0.000000e+00 1037.0
2 TraesCS2B01G531800 chr2B 87.353 680 62 8 976 1650 727313336 727313996 0.000000e+00 758.0
3 TraesCS2B01G531800 chr2B 86.009 679 63 12 1 676 373317063 373317712 0.000000e+00 699.0
4 TraesCS2B01G531800 chr2B 95.620 274 9 3 2391 2664 526267222 526266952 1.430000e-118 436.0
5 TraesCS2B01G531800 chr2B 88.603 272 30 1 2096 2367 727314287 727314557 2.490000e-86 329.0
6 TraesCS2B01G531800 chr2B 90.535 243 21 2 1800 2041 727314033 727314274 1.500000e-83 320.0
7 TraesCS2B01G531800 chr2B 76.357 571 115 15 1699 2259 727653722 727653162 4.230000e-74 289.0
8 TraesCS2B01G531800 chr2D 94.490 1107 53 5 1292 2395 598732523 598733624 0.000000e+00 1700.0
9 TraesCS2B01G531800 chr2D 92.609 663 40 3 2691 3344 598733711 598734373 0.000000e+00 944.0
10 TraesCS2B01G531800 chr2D 88.619 659 49 7 4 662 648597659 648597027 0.000000e+00 778.0
11 TraesCS2B01G531800 chr2D 75.770 714 130 31 1344 2043 57258800 57258116 1.500000e-83 320.0
12 TraesCS2B01G531800 chr2D 76.481 574 109 20 1699 2259 598746307 598745747 4.230000e-74 289.0
13 TraesCS2B01G531800 chr2D 89.655 87 6 1 1502 1588 57192417 57192334 1.270000e-19 108.0
14 TraesCS2B01G531800 chr2A 93.327 1139 51 9 1263 2399 732987392 732988507 0.000000e+00 1659.0
15 TraesCS2B01G531800 chr2A 93.979 681 28 5 2682 3349 732988517 732989197 0.000000e+00 1018.0
16 TraesCS2B01G531800 chr2A 75.055 910 174 38 1354 2229 733040807 733039917 1.130000e-99 374.0
17 TraesCS2B01G531800 chr1B 89.333 675 61 6 1 672 650443930 650444596 0.000000e+00 837.0
18 TraesCS2B01G531800 chr1B 88.548 620 62 3 1 620 684978541 684979151 0.000000e+00 743.0
19 TraesCS2B01G531800 chr1B 86.628 688 62 13 2 685 95480575 95481236 0.000000e+00 734.0
20 TraesCS2B01G531800 chr1B 95.238 273 12 1 2386 2658 449389012 449389283 6.640000e-117 431.0
21 TraesCS2B01G531800 chr4B 89.329 656 60 4 24 670 37924963 37924309 0.000000e+00 815.0
22 TraesCS2B01G531800 chr4B 97.727 264 5 1 2393 2656 483338717 483338979 1.420000e-123 453.0
23 TraesCS2B01G531800 chr4B 96.642 268 8 1 2392 2659 277811522 277811256 8.530000e-121 444.0
24 TraesCS2B01G531800 chr3B 87.316 678 70 10 1 674 537495460 537496125 0.000000e+00 761.0
25 TraesCS2B01G531800 chr3B 87.021 678 72 10 1 674 537505360 537506025 0.000000e+00 750.0
26 TraesCS2B01G531800 chr3B 95.324 278 11 2 2384 2660 740805611 740805887 1.100000e-119 440.0
27 TraesCS2B01G531800 chr3B 95.273 275 12 1 2385 2659 19251357 19251084 5.130000e-118 435.0
28 TraesCS2B01G531800 chrUn 87.168 678 71 10 1 674 335315138 335315803 0.000000e+00 756.0
29 TraesCS2B01G531800 chrUn 96.591 264 8 1 2393 2656 124738214 124737952 1.430000e-118 436.0
30 TraesCS2B01G531800 chr5B 88.713 567 53 4 109 672 486272347 486272905 0.000000e+00 682.0
31 TraesCS2B01G531800 chr5B 72.421 504 104 25 1500 1978 682819402 682819895 9.750000e-26 128.0
32 TraesCS2B01G531800 chr7B 88.669 556 55 4 123 674 706462314 706461763 0.000000e+00 671.0
33 TraesCS2B01G531800 chr7B 84.480 683 78 8 1 674 83890991 83890328 0.000000e+00 649.0
34 TraesCS2B01G531800 chr6B 96.617 266 8 1 2391 2656 556846395 556846131 1.100000e-119 440.0
35 TraesCS2B01G531800 chr6B 95.588 272 10 2 2389 2659 684933135 684933405 5.130000e-118 435.0
36 TraesCS2B01G531800 chr6B 73.870 708 154 19 1344 2043 579887800 579887116 1.540000e-63 254.0
37 TraesCS2B01G531800 chr6D 73.712 951 192 37 1344 2274 388152597 388151685 5.390000e-83 318.0
38 TraesCS2B01G531800 chr6A 73.629 948 198 34 1344 2274 534798619 534797707 5.390000e-83 318.0
39 TraesCS2B01G531800 chr3D 78.862 123 22 4 1728 1848 19037745 19037865 2.770000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G531800 chr2B 727239639 727242987 3348 False 6185.0 6185 100.0000 1 3349 1 chr2B.!!$F2 3348
1 TraesCS2B01G531800 chr2B 373317063 373317712 649 False 699.0 699 86.0090 1 676 1 chr2B.!!$F1 675
2 TraesCS2B01G531800 chr2B 727313336 727316740 3404 False 611.0 1037 89.8495 976 3349 4 chr2B.!!$F3 2373
3 TraesCS2B01G531800 chr2B 727653162 727653722 560 True 289.0 289 76.3570 1699 2259 1 chr2B.!!$R2 560
4 TraesCS2B01G531800 chr2D 598732523 598734373 1850 False 1322.0 1700 93.5495 1292 3344 2 chr2D.!!$F1 2052
5 TraesCS2B01G531800 chr2D 648597027 648597659 632 True 778.0 778 88.6190 4 662 1 chr2D.!!$R4 658
6 TraesCS2B01G531800 chr2D 57258116 57258800 684 True 320.0 320 75.7700 1344 2043 1 chr2D.!!$R2 699
7 TraesCS2B01G531800 chr2D 598745747 598746307 560 True 289.0 289 76.4810 1699 2259 1 chr2D.!!$R3 560
8 TraesCS2B01G531800 chr2A 732987392 732989197 1805 False 1338.5 1659 93.6530 1263 3349 2 chr2A.!!$F1 2086
9 TraesCS2B01G531800 chr2A 733039917 733040807 890 True 374.0 374 75.0550 1354 2229 1 chr2A.!!$R1 875
10 TraesCS2B01G531800 chr1B 650443930 650444596 666 False 837.0 837 89.3330 1 672 1 chr1B.!!$F3 671
11 TraesCS2B01G531800 chr1B 684978541 684979151 610 False 743.0 743 88.5480 1 620 1 chr1B.!!$F4 619
12 TraesCS2B01G531800 chr1B 95480575 95481236 661 False 734.0 734 86.6280 2 685 1 chr1B.!!$F1 683
13 TraesCS2B01G531800 chr4B 37924309 37924963 654 True 815.0 815 89.3290 24 670 1 chr4B.!!$R1 646
14 TraesCS2B01G531800 chr3B 537495460 537496125 665 False 761.0 761 87.3160 1 674 1 chr3B.!!$F1 673
15 TraesCS2B01G531800 chr3B 537505360 537506025 665 False 750.0 750 87.0210 1 674 1 chr3B.!!$F2 673
16 TraesCS2B01G531800 chrUn 335315138 335315803 665 False 756.0 756 87.1680 1 674 1 chrUn.!!$F1 673
17 TraesCS2B01G531800 chr5B 486272347 486272905 558 False 682.0 682 88.7130 109 672 1 chr5B.!!$F1 563
18 TraesCS2B01G531800 chr7B 706461763 706462314 551 True 671.0 671 88.6690 123 674 1 chr7B.!!$R2 551
19 TraesCS2B01G531800 chr7B 83890328 83890991 663 True 649.0 649 84.4800 1 674 1 chr7B.!!$R1 673
20 TraesCS2B01G531800 chr6B 579887116 579887800 684 True 254.0 254 73.8700 1344 2043 1 chr6B.!!$R2 699
21 TraesCS2B01G531800 chr6D 388151685 388152597 912 True 318.0 318 73.7120 1344 2274 1 chr6D.!!$R1 930
22 TraesCS2B01G531800 chr6A 534797707 534798619 912 True 318.0 318 73.6290 1344 2274 1 chr6A.!!$R1 930

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
848 867 0.028902 CGTACGCGTCAGATCATCCA 59.971 55.0 18.63 0.0 0.0 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2637 3953 1.076677 AGTACTCCCTCCGTTTCCTCA 59.923 52.381 0.0 0.0 0.0 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
164 169 1.444212 CGGCGCATTTGGGAACTTG 60.444 57.895 10.83 0.00 0.00 3.16
677 696 3.583806 CGCCTGGAGATGCTCTAATAAG 58.416 50.000 0.00 0.00 0.00 1.73
678 697 3.006323 CGCCTGGAGATGCTCTAATAAGT 59.994 47.826 0.00 0.00 0.00 2.24
679 698 4.218635 CGCCTGGAGATGCTCTAATAAGTA 59.781 45.833 0.00 0.00 0.00 2.24
680 699 5.105554 CGCCTGGAGATGCTCTAATAAGTAT 60.106 44.000 0.00 0.00 0.00 2.12
707 726 5.413969 AAAAACGTAGTCAACTGGTTAGC 57.586 39.130 0.00 0.00 45.00 3.09
708 727 3.738830 AACGTAGTCAACTGGTTAGCA 57.261 42.857 0.00 0.00 45.00 3.49
709 728 3.738830 ACGTAGTCAACTGGTTAGCAA 57.261 42.857 0.00 0.00 29.74 3.91
710 729 4.267349 ACGTAGTCAACTGGTTAGCAAT 57.733 40.909 0.00 0.00 29.74 3.56
711 730 4.243270 ACGTAGTCAACTGGTTAGCAATC 58.757 43.478 0.00 0.00 29.74 2.67
712 731 3.303495 CGTAGTCAACTGGTTAGCAATCG 59.697 47.826 0.00 0.00 0.00 3.34
713 732 3.402628 AGTCAACTGGTTAGCAATCGT 57.597 42.857 0.00 0.00 0.00 3.73
714 733 3.326747 AGTCAACTGGTTAGCAATCGTC 58.673 45.455 0.00 0.00 0.00 4.20
715 734 2.092211 GTCAACTGGTTAGCAATCGTCG 59.908 50.000 0.00 0.00 0.00 5.12
716 735 2.066262 CAACTGGTTAGCAATCGTCGT 58.934 47.619 0.00 0.00 0.00 4.34
717 736 2.450609 ACTGGTTAGCAATCGTCGTT 57.549 45.000 0.00 0.00 0.00 3.85
718 737 2.334838 ACTGGTTAGCAATCGTCGTTC 58.665 47.619 0.00 0.00 0.00 3.95
719 738 2.029290 ACTGGTTAGCAATCGTCGTTCT 60.029 45.455 0.00 0.00 0.00 3.01
720 739 2.599082 CTGGTTAGCAATCGTCGTTCTC 59.401 50.000 0.00 0.00 0.00 2.87
721 740 2.029739 TGGTTAGCAATCGTCGTTCTCA 60.030 45.455 0.00 0.00 0.00 3.27
722 741 2.344741 GGTTAGCAATCGTCGTTCTCAC 59.655 50.000 0.00 0.00 0.00 3.51
723 742 2.273370 TAGCAATCGTCGTTCTCACC 57.727 50.000 0.00 0.00 0.00 4.02
724 743 0.317160 AGCAATCGTCGTTCTCACCA 59.683 50.000 0.00 0.00 0.00 4.17
725 744 0.438830 GCAATCGTCGTTCTCACCAC 59.561 55.000 0.00 0.00 0.00 4.16
726 745 1.068474 CAATCGTCGTTCTCACCACC 58.932 55.000 0.00 0.00 0.00 4.61
727 746 0.966920 AATCGTCGTTCTCACCACCT 59.033 50.000 0.00 0.00 0.00 4.00
728 747 0.243907 ATCGTCGTTCTCACCACCTG 59.756 55.000 0.00 0.00 0.00 4.00
729 748 0.820482 TCGTCGTTCTCACCACCTGA 60.820 55.000 0.00 0.00 0.00 3.86
730 749 0.031585 CGTCGTTCTCACCACCTGAA 59.968 55.000 0.00 0.00 0.00 3.02
731 750 1.336887 CGTCGTTCTCACCACCTGAAT 60.337 52.381 0.00 0.00 0.00 2.57
732 751 2.767505 GTCGTTCTCACCACCTGAATT 58.232 47.619 0.00 0.00 0.00 2.17
733 752 2.480419 GTCGTTCTCACCACCTGAATTG 59.520 50.000 0.00 0.00 0.00 2.32
734 753 2.367241 TCGTTCTCACCACCTGAATTGA 59.633 45.455 0.00 0.00 0.00 2.57
735 754 3.007940 TCGTTCTCACCACCTGAATTGAT 59.992 43.478 0.00 0.00 0.00 2.57
736 755 3.372206 CGTTCTCACCACCTGAATTGATC 59.628 47.826 0.00 0.00 0.00 2.92
737 756 3.634397 TCTCACCACCTGAATTGATCC 57.366 47.619 0.00 0.00 0.00 3.36
738 757 2.093500 TCTCACCACCTGAATTGATCCG 60.093 50.000 0.00 0.00 0.00 4.18
739 758 1.905894 TCACCACCTGAATTGATCCGA 59.094 47.619 0.00 0.00 0.00 4.55
740 759 2.304470 TCACCACCTGAATTGATCCGAA 59.696 45.455 0.00 0.00 0.00 4.30
741 760 3.054434 TCACCACCTGAATTGATCCGAAT 60.054 43.478 0.00 0.00 0.00 3.34
742 761 3.696051 CACCACCTGAATTGATCCGAATT 59.304 43.478 0.00 0.00 0.00 2.17
743 762 3.947834 ACCACCTGAATTGATCCGAATTC 59.052 43.478 10.24 10.24 41.07 2.17
744 763 4.202441 CCACCTGAATTGATCCGAATTCT 58.798 43.478 15.64 0.00 41.21 2.40
745 764 4.641989 CCACCTGAATTGATCCGAATTCTT 59.358 41.667 15.64 0.00 41.21 2.52
746 765 5.126061 CCACCTGAATTGATCCGAATTCTTT 59.874 40.000 15.64 2.59 41.21 2.52
747 766 6.032094 CACCTGAATTGATCCGAATTCTTTG 58.968 40.000 15.64 8.80 41.21 2.77
748 767 5.945784 ACCTGAATTGATCCGAATTCTTTGA 59.054 36.000 15.64 0.00 41.21 2.69
749 768 6.127897 ACCTGAATTGATCCGAATTCTTTGAC 60.128 38.462 15.64 0.00 41.21 3.18
750 769 6.194796 TGAATTGATCCGAATTCTTTGACC 57.805 37.500 15.64 0.00 41.21 4.02
751 770 5.709631 TGAATTGATCCGAATTCTTTGACCA 59.290 36.000 15.64 0.00 41.21 4.02
752 771 6.208402 TGAATTGATCCGAATTCTTTGACCAA 59.792 34.615 15.64 1.72 41.21 3.67
753 772 6.588719 ATTGATCCGAATTCTTTGACCAAA 57.411 33.333 3.52 0.00 0.00 3.28
754 773 5.371115 TGATCCGAATTCTTTGACCAAAC 57.629 39.130 3.52 0.00 0.00 2.93
755 774 4.217550 TGATCCGAATTCTTTGACCAAACC 59.782 41.667 3.52 0.00 0.00 3.27
756 775 3.556999 TCCGAATTCTTTGACCAAACCA 58.443 40.909 3.52 0.00 0.00 3.67
757 776 4.148838 TCCGAATTCTTTGACCAAACCAT 58.851 39.130 3.52 0.00 0.00 3.55
758 777 4.022416 TCCGAATTCTTTGACCAAACCATG 60.022 41.667 3.52 0.00 0.00 3.66
759 778 4.261994 CCGAATTCTTTGACCAAACCATGT 60.262 41.667 3.52 0.00 0.00 3.21
760 779 5.048364 CCGAATTCTTTGACCAAACCATGTA 60.048 40.000 3.52 0.00 0.00 2.29
761 780 6.086222 CGAATTCTTTGACCAAACCATGTAG 58.914 40.000 3.52 0.00 0.00 2.74
762 781 6.072728 CGAATTCTTTGACCAAACCATGTAGA 60.073 38.462 3.52 0.00 0.00 2.59
763 782 7.521423 CGAATTCTTTGACCAAACCATGTAGAA 60.521 37.037 3.52 0.00 0.00 2.10
764 783 6.385649 TTCTTTGACCAAACCATGTAGAAC 57.614 37.500 0.00 0.00 0.00 3.01
765 784 4.513692 TCTTTGACCAAACCATGTAGAACG 59.486 41.667 0.00 0.00 0.00 3.95
766 785 2.773487 TGACCAAACCATGTAGAACGG 58.227 47.619 0.00 0.00 0.00 4.44
767 786 2.369203 TGACCAAACCATGTAGAACGGA 59.631 45.455 0.00 0.00 0.00 4.69
768 787 3.008594 TGACCAAACCATGTAGAACGGAT 59.991 43.478 0.00 0.00 0.00 4.18
769 788 4.007659 GACCAAACCATGTAGAACGGATT 58.992 43.478 0.00 0.00 0.00 3.01
770 789 3.756434 ACCAAACCATGTAGAACGGATTG 59.244 43.478 0.00 0.00 33.62 2.67
771 790 3.128589 CCAAACCATGTAGAACGGATTGG 59.871 47.826 6.41 6.41 43.60 3.16
772 791 2.710096 ACCATGTAGAACGGATTGGG 57.290 50.000 0.00 0.00 0.00 4.12
773 792 1.308998 CCATGTAGAACGGATTGGGC 58.691 55.000 0.00 0.00 0.00 5.36
774 793 1.408127 CCATGTAGAACGGATTGGGCA 60.408 52.381 0.00 0.00 0.00 5.36
775 794 1.670811 CATGTAGAACGGATTGGGCAC 59.329 52.381 0.00 0.00 0.00 5.01
776 795 0.687920 TGTAGAACGGATTGGGCACA 59.312 50.000 0.00 0.00 0.00 4.57
777 796 1.338674 TGTAGAACGGATTGGGCACAG 60.339 52.381 0.00 0.00 0.00 3.66
778 797 1.066430 GTAGAACGGATTGGGCACAGA 60.066 52.381 0.00 0.00 0.00 3.41
779 798 0.321653 AGAACGGATTGGGCACAGAC 60.322 55.000 0.00 0.00 0.00 3.51
780 799 1.635663 GAACGGATTGGGCACAGACG 61.636 60.000 7.35 7.35 0.00 4.18
781 800 2.107041 AACGGATTGGGCACAGACGA 62.107 55.000 14.53 0.00 0.00 4.20
782 801 1.153369 CGGATTGGGCACAGACGAT 60.153 57.895 3.31 0.00 0.00 3.73
783 802 0.744414 CGGATTGGGCACAGACGATT 60.744 55.000 3.31 0.00 0.00 3.34
784 803 0.734889 GGATTGGGCACAGACGATTG 59.265 55.000 0.00 0.00 0.00 2.67
785 804 1.453155 GATTGGGCACAGACGATTGT 58.547 50.000 0.00 0.00 0.00 2.71
786 805 1.812571 GATTGGGCACAGACGATTGTT 59.187 47.619 0.00 0.00 0.00 2.83
787 806 1.686355 TTGGGCACAGACGATTGTTT 58.314 45.000 0.00 0.00 0.00 2.83
788 807 1.686355 TGGGCACAGACGATTGTTTT 58.314 45.000 0.00 0.00 0.00 2.43
789 808 2.852449 TGGGCACAGACGATTGTTTTA 58.148 42.857 0.00 0.00 0.00 1.52
790 809 3.417101 TGGGCACAGACGATTGTTTTAT 58.583 40.909 0.00 0.00 0.00 1.40
791 810 3.438781 TGGGCACAGACGATTGTTTTATC 59.561 43.478 0.00 0.00 0.00 1.75
792 811 3.181500 GGGCACAGACGATTGTTTTATCC 60.181 47.826 0.00 0.00 0.00 2.59
793 812 3.181500 GGCACAGACGATTGTTTTATCCC 60.181 47.826 0.00 0.00 0.00 3.85
794 813 3.181500 GCACAGACGATTGTTTTATCCCC 60.181 47.826 0.00 0.00 0.00 4.81
795 814 3.377172 CACAGACGATTGTTTTATCCCCC 59.623 47.826 0.00 0.00 0.00 5.40
796 815 3.009695 ACAGACGATTGTTTTATCCCCCA 59.990 43.478 0.00 0.00 0.00 4.96
797 816 3.627577 CAGACGATTGTTTTATCCCCCAG 59.372 47.826 0.00 0.00 0.00 4.45
798 817 3.265995 AGACGATTGTTTTATCCCCCAGT 59.734 43.478 0.00 0.00 0.00 4.00
799 818 3.352648 ACGATTGTTTTATCCCCCAGTG 58.647 45.455 0.00 0.00 0.00 3.66
800 819 2.687935 CGATTGTTTTATCCCCCAGTGG 59.312 50.000 0.63 0.63 0.00 4.00
801 820 1.931635 TTGTTTTATCCCCCAGTGGC 58.068 50.000 2.61 0.00 0.00 5.01
802 821 0.040499 TGTTTTATCCCCCAGTGGCC 59.960 55.000 2.61 0.00 0.00 5.36
803 822 0.335019 GTTTTATCCCCCAGTGGCCT 59.665 55.000 3.32 0.00 0.00 5.19
804 823 1.089123 TTTTATCCCCCAGTGGCCTT 58.911 50.000 3.32 0.00 0.00 4.35
805 824 0.334676 TTTATCCCCCAGTGGCCTTG 59.665 55.000 3.32 2.08 0.00 3.61
806 825 2.223464 TTATCCCCCAGTGGCCTTGC 62.223 60.000 3.32 0.00 0.00 4.01
808 827 3.338250 CCCCCAGTGGCCTTGCTA 61.338 66.667 3.32 0.00 0.00 3.49
809 828 2.693871 CCCCCAGTGGCCTTGCTAT 61.694 63.158 3.32 0.00 0.00 2.97
810 829 1.307647 CCCCAGTGGCCTTGCTATT 59.692 57.895 3.32 0.00 0.00 1.73
811 830 1.039233 CCCCAGTGGCCTTGCTATTG 61.039 60.000 3.32 0.00 0.00 1.90
812 831 1.039233 CCCAGTGGCCTTGCTATTGG 61.039 60.000 3.32 6.95 44.09 3.16
813 832 1.669999 CCAGTGGCCTTGCTATTGGC 61.670 60.000 3.32 0.00 39.58 4.52
817 836 3.607163 GCCTTGCTATTGGCTGCA 58.393 55.556 0.50 0.00 45.26 4.41
818 837 1.140375 GCCTTGCTATTGGCTGCAC 59.860 57.895 0.50 0.00 45.26 4.57
819 838 1.597797 GCCTTGCTATTGGCTGCACA 61.598 55.000 0.50 0.00 45.26 4.57
820 839 0.171903 CCTTGCTATTGGCTGCACAC 59.828 55.000 0.50 0.00 42.39 3.82
821 840 1.171308 CTTGCTATTGGCTGCACACT 58.829 50.000 0.50 0.00 42.39 3.55
822 841 1.542915 CTTGCTATTGGCTGCACACTT 59.457 47.619 0.50 0.00 42.39 3.16
823 842 1.619654 TGCTATTGGCTGCACACTTT 58.380 45.000 0.50 0.00 42.39 2.66
824 843 1.541147 TGCTATTGGCTGCACACTTTC 59.459 47.619 0.50 0.00 42.39 2.62
825 844 1.541147 GCTATTGGCTGCACACTTTCA 59.459 47.619 0.50 0.00 38.06 2.69
826 845 2.030007 GCTATTGGCTGCACACTTTCAA 60.030 45.455 0.50 0.00 38.06 2.69
827 846 2.806608 ATTGGCTGCACACTTTCAAG 57.193 45.000 0.50 0.00 0.00 3.02
828 847 1.761449 TTGGCTGCACACTTTCAAGA 58.239 45.000 0.50 0.00 0.00 3.02
829 848 1.024271 TGGCTGCACACTTTCAAGAC 58.976 50.000 0.50 0.00 0.00 3.01
830 849 0.040958 GGCTGCACACTTTCAAGACG 60.041 55.000 0.50 0.00 0.00 4.18
831 850 0.657840 GCTGCACACTTTCAAGACGT 59.342 50.000 0.00 0.00 0.00 4.34
832 851 1.864711 GCTGCACACTTTCAAGACGTA 59.135 47.619 0.00 0.00 0.00 3.57
833 852 2.348591 GCTGCACACTTTCAAGACGTAC 60.349 50.000 0.00 0.00 0.00 3.67
834 853 1.855978 TGCACACTTTCAAGACGTACG 59.144 47.619 15.01 15.01 0.00 3.67
835 854 1.396815 GCACACTTTCAAGACGTACGC 60.397 52.381 16.72 8.42 0.00 4.42
836 855 1.126079 ACACTTTCAAGACGTACGCG 58.874 50.000 16.72 3.53 44.93 6.01
847 866 2.784712 CGTACGCGTCAGATCATCC 58.215 57.895 18.63 0.00 0.00 3.51
848 867 0.028902 CGTACGCGTCAGATCATCCA 59.971 55.000 18.63 0.00 0.00 3.41
849 868 1.478137 GTACGCGTCAGATCATCCAC 58.522 55.000 18.63 0.00 0.00 4.02
850 869 1.099689 TACGCGTCAGATCATCCACA 58.900 50.000 18.63 0.00 0.00 4.17
851 870 0.246360 ACGCGTCAGATCATCCACAA 59.754 50.000 5.58 0.00 0.00 3.33
852 871 1.337728 ACGCGTCAGATCATCCACAAA 60.338 47.619 5.58 0.00 0.00 2.83
853 872 1.325640 CGCGTCAGATCATCCACAAAG 59.674 52.381 0.00 0.00 0.00 2.77
854 873 2.350522 GCGTCAGATCATCCACAAAGT 58.649 47.619 0.00 0.00 0.00 2.66
855 874 2.744202 GCGTCAGATCATCCACAAAGTT 59.256 45.455 0.00 0.00 0.00 2.66
856 875 3.425359 GCGTCAGATCATCCACAAAGTTG 60.425 47.826 0.00 0.00 0.00 3.16
857 876 3.996363 CGTCAGATCATCCACAAAGTTGA 59.004 43.478 0.00 0.00 0.00 3.18
858 877 4.143030 CGTCAGATCATCCACAAAGTTGAC 60.143 45.833 0.00 0.00 0.00 3.18
859 878 4.756642 GTCAGATCATCCACAAAGTTGACA 59.243 41.667 0.00 0.00 34.22 3.58
860 879 5.239306 GTCAGATCATCCACAAAGTTGACAA 59.761 40.000 0.00 0.00 34.22 3.18
861 880 6.005823 TCAGATCATCCACAAAGTTGACAAT 58.994 36.000 0.00 0.00 0.00 2.71
862 881 6.149973 TCAGATCATCCACAAAGTTGACAATC 59.850 38.462 0.00 0.00 0.00 2.67
863 882 4.747540 TCATCCACAAAGTTGACAATCG 57.252 40.909 0.00 0.00 0.00 3.34
864 883 4.384940 TCATCCACAAAGTTGACAATCGA 58.615 39.130 0.00 0.00 0.00 3.59
865 884 4.452114 TCATCCACAAAGTTGACAATCGAG 59.548 41.667 0.00 0.00 0.00 4.04
866 885 4.066646 TCCACAAAGTTGACAATCGAGA 57.933 40.909 0.00 0.00 0.00 4.04
867 886 4.641396 TCCACAAAGTTGACAATCGAGAT 58.359 39.130 0.00 0.00 0.00 2.75
868 887 5.789521 TCCACAAAGTTGACAATCGAGATA 58.210 37.500 0.00 0.00 0.00 1.98
869 888 6.406370 TCCACAAAGTTGACAATCGAGATAT 58.594 36.000 0.00 0.00 0.00 1.63
870 889 6.535150 TCCACAAAGTTGACAATCGAGATATC 59.465 38.462 0.00 0.00 0.00 1.63
871 890 6.313658 CCACAAAGTTGACAATCGAGATATCA 59.686 38.462 5.32 0.00 0.00 2.15
872 891 7.397194 CACAAAGTTGACAATCGAGATATCAG 58.603 38.462 5.32 0.00 0.00 2.90
873 892 7.276438 CACAAAGTTGACAATCGAGATATCAGA 59.724 37.037 5.32 4.47 0.00 3.27
874 893 7.819415 ACAAAGTTGACAATCGAGATATCAGAA 59.181 33.333 5.32 0.00 0.00 3.02
875 894 8.659491 CAAAGTTGACAATCGAGATATCAGAAA 58.341 33.333 5.32 0.00 0.00 2.52
876 895 8.954950 AAGTTGACAATCGAGATATCAGAAAT 57.045 30.769 5.32 0.00 0.00 2.17
877 896 8.362860 AGTTGACAATCGAGATATCAGAAATG 57.637 34.615 5.32 9.72 0.00 2.32
878 897 7.984050 AGTTGACAATCGAGATATCAGAAATGT 59.016 33.333 5.32 12.36 0.00 2.71
879 898 7.936950 TGACAATCGAGATATCAGAAATGTC 57.063 36.000 24.23 24.23 36.36 3.06
880 899 6.638468 TGACAATCGAGATATCAGAAATGTCG 59.362 38.462 24.65 16.83 40.40 4.35
885 904 6.970484 TCGAGATATCAGAAATGTCGAATGA 58.030 36.000 5.32 0.00 43.50 2.57
886 905 6.858478 TCGAGATATCAGAAATGTCGAATGAC 59.142 38.462 5.32 0.00 43.50 3.06
896 915 1.560923 GTCGAATGACGCATACAGCT 58.439 50.000 0.00 0.00 42.61 4.24
897 916 1.256376 GTCGAATGACGCATACAGCTG 59.744 52.381 13.48 13.48 42.61 4.24
898 917 0.042708 CGAATGACGCATACAGCTGC 60.043 55.000 15.27 0.00 42.61 5.25
899 918 1.009078 GAATGACGCATACAGCTGCA 58.991 50.000 15.27 0.00 42.40 4.41
900 919 1.004185 GAATGACGCATACAGCTGCAG 60.004 52.381 15.27 10.11 42.40 4.41
901 920 0.812811 ATGACGCATACAGCTGCAGG 60.813 55.000 17.12 3.28 42.40 4.85
902 921 2.817423 GACGCATACAGCTGCAGGC 61.817 63.158 17.12 14.33 42.40 4.85
903 922 2.820922 CGCATACAGCTGCAGGCA 60.821 61.111 22.30 0.00 42.40 4.75
904 923 2.400962 CGCATACAGCTGCAGGCAA 61.401 57.895 22.30 0.00 42.40 4.52
905 924 1.885157 GCATACAGCTGCAGGCAAA 59.115 52.632 18.33 0.00 44.79 3.68
906 925 0.179145 GCATACAGCTGCAGGCAAAG 60.179 55.000 18.33 5.03 44.79 2.77
907 926 0.454600 CATACAGCTGCAGGCAAAGG 59.545 55.000 17.12 2.39 44.79 3.11
908 927 0.329261 ATACAGCTGCAGGCAAAGGA 59.671 50.000 17.12 0.00 44.79 3.36
909 928 0.110295 TACAGCTGCAGGCAAAGGAA 59.890 50.000 17.12 0.00 44.79 3.36
910 929 1.177256 ACAGCTGCAGGCAAAGGAAG 61.177 55.000 17.12 0.00 44.79 3.46
911 930 2.260743 GCTGCAGGCAAAGGAAGC 59.739 61.111 17.12 0.00 41.35 3.86
912 931 2.567497 GCTGCAGGCAAAGGAAGCA 61.567 57.895 17.12 0.00 41.35 3.91
913 932 2.043625 CTGCAGGCAAAGGAAGCAA 58.956 52.632 5.57 0.00 34.45 3.91
914 933 0.319297 CTGCAGGCAAAGGAAGCAAC 60.319 55.000 5.57 0.00 34.45 4.17
915 934 1.042003 TGCAGGCAAAGGAAGCAACA 61.042 50.000 0.00 0.00 31.42 3.33
916 935 0.598419 GCAGGCAAAGGAAGCAACAC 60.598 55.000 0.00 0.00 0.00 3.32
917 936 0.746063 CAGGCAAAGGAAGCAACACA 59.254 50.000 0.00 0.00 0.00 3.72
918 937 1.342174 CAGGCAAAGGAAGCAACACAT 59.658 47.619 0.00 0.00 0.00 3.21
919 938 2.041701 AGGCAAAGGAAGCAACACATT 58.958 42.857 0.00 0.00 0.00 2.71
920 939 2.036346 AGGCAAAGGAAGCAACACATTC 59.964 45.455 0.00 0.00 0.00 2.67
921 940 2.224018 GGCAAAGGAAGCAACACATTCA 60.224 45.455 0.00 0.00 0.00 2.57
922 941 3.555586 GGCAAAGGAAGCAACACATTCAT 60.556 43.478 0.00 0.00 0.00 2.57
923 942 3.676646 GCAAAGGAAGCAACACATTCATC 59.323 43.478 0.00 0.00 0.00 2.92
924 943 4.240096 CAAAGGAAGCAACACATTCATCC 58.760 43.478 0.00 0.00 0.00 3.51
925 944 2.450476 AGGAAGCAACACATTCATCCC 58.550 47.619 0.00 0.00 0.00 3.85
926 945 1.478105 GGAAGCAACACATTCATCCCC 59.522 52.381 0.00 0.00 0.00 4.81
927 946 1.133025 GAAGCAACACATTCATCCCCG 59.867 52.381 0.00 0.00 0.00 5.73
928 947 0.680921 AGCAACACATTCATCCCCGG 60.681 55.000 0.00 0.00 0.00 5.73
929 948 0.679640 GCAACACATTCATCCCCGGA 60.680 55.000 0.73 0.00 0.00 5.14
930 949 1.094785 CAACACATTCATCCCCGGAC 58.905 55.000 0.73 0.00 0.00 4.79
931 950 0.695924 AACACATTCATCCCCGGACA 59.304 50.000 0.73 0.00 0.00 4.02
932 951 0.035439 ACACATTCATCCCCGGACAC 60.035 55.000 0.73 0.00 0.00 3.67
933 952 0.253044 CACATTCATCCCCGGACACT 59.747 55.000 0.73 0.00 0.00 3.55
934 953 0.541863 ACATTCATCCCCGGACACTC 59.458 55.000 0.73 0.00 0.00 3.51
935 954 0.530650 CATTCATCCCCGGACACTCG 60.531 60.000 0.73 0.00 0.00 4.18
936 955 0.686441 ATTCATCCCCGGACACTCGA 60.686 55.000 0.73 0.00 0.00 4.04
937 956 0.901114 TTCATCCCCGGACACTCGAA 60.901 55.000 0.73 0.00 0.00 3.71
938 957 0.901114 TCATCCCCGGACACTCGAAA 60.901 55.000 0.73 0.00 0.00 3.46
939 958 0.460284 CATCCCCGGACACTCGAAAG 60.460 60.000 0.73 0.00 0.00 2.62
940 959 1.614241 ATCCCCGGACACTCGAAAGG 61.614 60.000 0.73 0.00 0.00 3.11
941 960 2.280552 CCCCGGACACTCGAAAGGA 61.281 63.158 0.73 0.00 0.00 3.36
942 961 1.080025 CCCGGACACTCGAAAGGAC 60.080 63.158 0.73 0.00 0.00 3.85
943 962 1.443872 CCGGACACTCGAAAGGACG 60.444 63.158 0.00 0.00 0.00 4.79
944 963 2.087009 CGGACACTCGAAAGGACGC 61.087 63.158 0.00 0.00 0.00 5.19
945 964 1.289380 GGACACTCGAAAGGACGCT 59.711 57.895 0.00 0.00 0.00 5.07
946 965 0.733223 GGACACTCGAAAGGACGCTC 60.733 60.000 0.00 0.00 0.00 5.03
947 966 0.733223 GACACTCGAAAGGACGCTCC 60.733 60.000 0.00 0.00 36.58 4.70
948 967 1.289066 CACTCGAAAGGACGCTCCA 59.711 57.895 6.78 0.00 39.61 3.86
949 968 0.319555 CACTCGAAAGGACGCTCCAA 60.320 55.000 6.78 0.00 39.61 3.53
950 969 0.038159 ACTCGAAAGGACGCTCCAAG 60.038 55.000 6.78 0.00 39.61 3.61
951 970 0.038159 CTCGAAAGGACGCTCCAAGT 60.038 55.000 6.78 0.00 39.61 3.16
952 971 0.038526 TCGAAAGGACGCTCCAAGTC 60.039 55.000 6.78 0.00 39.61 3.01
957 976 4.285851 GACGCTCCAAGTCCAAGG 57.714 61.111 0.00 0.00 32.78 3.61
958 977 1.671742 GACGCTCCAAGTCCAAGGA 59.328 57.895 0.00 0.00 32.78 3.36
962 981 2.069776 CTCCAAGTCCAAGGAGGCA 58.930 57.895 0.00 0.00 46.11 4.75
963 982 0.401738 CTCCAAGTCCAAGGAGGCAA 59.598 55.000 0.00 0.00 46.11 4.52
964 983 0.110486 TCCAAGTCCAAGGAGGCAAC 59.890 55.000 0.00 0.00 37.29 4.17
965 984 0.178992 CCAAGTCCAAGGAGGCAACA 60.179 55.000 0.00 0.00 41.41 3.33
966 985 1.548582 CCAAGTCCAAGGAGGCAACAT 60.549 52.381 0.00 0.00 41.41 2.71
967 986 1.815003 CAAGTCCAAGGAGGCAACATC 59.185 52.381 0.00 0.00 41.41 3.06
968 987 1.366319 AGTCCAAGGAGGCAACATCT 58.634 50.000 0.00 0.00 41.41 2.90
969 988 1.280421 AGTCCAAGGAGGCAACATCTC 59.720 52.381 0.00 0.00 41.41 2.75
980 999 0.107456 CAACATCTCCTGATCCCCCG 59.893 60.000 0.00 0.00 0.00 5.73
984 1003 0.266152 ATCTCCTGATCCCCCGAAGT 59.734 55.000 0.00 0.00 0.00 3.01
989 1008 0.745845 CTGATCCCCCGAAGTTGCTG 60.746 60.000 0.00 0.00 0.00 4.41
997 1016 0.095935 CCGAAGTTGCTGCTTGATCG 59.904 55.000 0.00 6.37 0.00 3.69
1036 1055 2.013563 GCATCCTCGCCTTGTCAATCA 61.014 52.381 0.00 0.00 0.00 2.57
1043 1062 4.381612 CCTCGCCTTGTCAATCAGTAAGTA 60.382 45.833 0.00 0.00 0.00 2.24
1044 1063 4.491676 TCGCCTTGTCAATCAGTAAGTAC 58.508 43.478 0.00 0.00 0.00 2.73
1049 1068 6.924060 GCCTTGTCAATCAGTAAGTACGATAT 59.076 38.462 0.00 0.00 0.00 1.63
1054 1073 7.139392 GTCAATCAGTAAGTACGATATGCTCA 58.861 38.462 0.00 0.00 0.00 4.26
1056 1075 5.109662 TCAGTAAGTACGATATGCTCAGC 57.890 43.478 0.00 0.00 0.00 4.26
1059 1078 4.580995 AGTAAGTACGATATGCTCAGCTGT 59.419 41.667 14.67 0.00 0.00 4.40
1065 1084 3.136763 CGATATGCTCAGCTGTTGGATT 58.863 45.455 14.67 6.11 0.00 3.01
1067 1086 4.751600 CGATATGCTCAGCTGTTGGATTAA 59.248 41.667 14.67 1.78 0.00 1.40
1070 1089 4.970662 TGCTCAGCTGTTGGATTAATTC 57.029 40.909 14.67 0.00 0.00 2.17
1071 1090 3.374988 TGCTCAGCTGTTGGATTAATTCG 59.625 43.478 14.67 0.00 0.00 3.34
1072 1091 3.790123 GCTCAGCTGTTGGATTAATTCGC 60.790 47.826 14.67 0.00 0.00 4.70
1073 1092 3.609853 TCAGCTGTTGGATTAATTCGCT 58.390 40.909 14.67 0.00 0.00 4.93
1076 1095 3.375299 AGCTGTTGGATTAATTCGCTGTC 59.625 43.478 0.00 0.00 0.00 3.51
1083 1102 4.745125 TGGATTAATTCGCTGTCGATTCTC 59.255 41.667 0.00 0.00 45.04 2.87
1085 1104 5.107683 GGATTAATTCGCTGTCGATTCTCAG 60.108 44.000 0.00 0.00 45.04 3.35
1099 1123 3.799281 TTCTCAGCTGTTTTTGGGTTG 57.201 42.857 14.67 0.00 0.00 3.77
1104 1128 3.068024 TCAGCTGTTTTTGGGTTGACATC 59.932 43.478 14.67 0.00 0.00 3.06
1105 1129 3.068590 CAGCTGTTTTTGGGTTGACATCT 59.931 43.478 5.25 0.00 0.00 2.90
1110 1134 3.731652 TTTTGGGTTGACATCTTGCAG 57.268 42.857 0.00 0.00 0.00 4.41
1119 1143 1.198637 GACATCTTGCAGTTGGAGTGC 59.801 52.381 0.90 0.90 44.57 4.40
1124 1148 0.819259 TTGCAGTTGGAGTGCTGGTC 60.819 55.000 8.97 0.00 44.61 4.02
1128 1152 2.031012 TTGGAGTGCTGGTCGCTG 59.969 61.111 0.00 0.00 40.11 5.18
1130 1154 4.008933 GGAGTGCTGGTCGCTGGT 62.009 66.667 0.00 0.00 40.11 4.00
1144 1168 1.476891 CGCTGGTATAGTGACAGTGGT 59.523 52.381 0.00 0.00 39.30 4.16
1165 1189 2.041976 CCACGATCGCCATCTACCT 58.958 57.895 16.60 0.00 0.00 3.08
1174 1198 0.250295 GCCATCTACCTATGCGCCAA 60.250 55.000 4.18 0.00 0.00 4.52
1175 1199 1.800805 CCATCTACCTATGCGCCAAG 58.199 55.000 4.18 1.26 0.00 3.61
1216 1240 1.271054 GCAGAAGGAAGACAAGCAGGA 60.271 52.381 0.00 0.00 0.00 3.86
1220 1244 2.035442 GGAAGACAAGCAGGACGGC 61.035 63.158 0.00 0.00 0.00 5.68
1276 1300 4.129737 TAGCACGCCGAGAGCCAC 62.130 66.667 0.00 0.00 38.78 5.01
1328 1352 1.561643 TGAGCTTCTTCATCGAGGGT 58.438 50.000 0.00 0.00 0.00 4.34
1403 1427 3.118454 GGCTTCGCGCACAAGCTA 61.118 61.111 29.88 0.00 44.87 3.32
1631 1658 1.448540 CATGGAGAACGGCTCGCTT 60.449 57.895 2.12 0.00 44.91 4.68
1973 2021 1.026718 GCTACGGGATGCTGCTGTTT 61.027 55.000 0.00 0.00 0.00 2.83
2241 2341 4.292178 GGGAGGAGCAGATCGCCG 62.292 72.222 6.02 0.00 44.04 6.46
2315 2415 3.137484 CGATGACACCACAACGGAT 57.863 52.632 0.00 0.00 38.63 4.18
2319 2419 0.762418 TGACACCACAACGGATTCCT 59.238 50.000 0.30 0.00 38.63 3.36
2403 3719 6.381498 TTGTGTTGAAATATACTCCCTCCA 57.619 37.500 0.00 0.00 0.00 3.86
2418 3734 7.575499 ACTCCCTCCATTCCTAAATATAAGG 57.425 40.000 0.00 0.00 35.26 2.69
2419 3735 7.089566 ACTCCCTCCATTCCTAAATATAAGGT 58.910 38.462 4.41 0.00 35.48 3.50
2420 3736 7.017651 ACTCCCTCCATTCCTAAATATAAGGTG 59.982 40.741 4.41 0.00 35.48 4.00
2422 3738 8.020253 TCCCTCCATTCCTAAATATAAGGTGTA 58.980 37.037 4.41 0.00 35.48 2.90
2423 3739 8.836735 CCCTCCATTCCTAAATATAAGGTGTAT 58.163 37.037 4.41 0.00 35.48 2.29
2453 3769 9.921637 TTTTTCAAAAAGTCAACTGTTGTCTAT 57.078 25.926 18.10 9.54 0.00 1.98
2460 3776 6.604735 AGTCAACTGTTGTCTATGTTTGAC 57.395 37.500 19.12 7.06 35.21 3.18
2461 3777 5.527582 AGTCAACTGTTGTCTATGTTTGACC 59.472 40.000 19.12 0.00 33.83 4.02
2464 3780 5.751243 ACTGTTGTCTATGTTTGACCAAC 57.249 39.130 0.00 0.00 33.83 3.77
2465 3781 5.437060 ACTGTTGTCTATGTTTGACCAACT 58.563 37.500 0.00 0.00 36.21 3.16
2466 3782 5.885912 ACTGTTGTCTATGTTTGACCAACTT 59.114 36.000 0.00 0.00 36.21 2.66
2469 3785 7.699566 TGTTGTCTATGTTTGACCAACTTTAC 58.300 34.615 0.00 0.00 36.21 2.01
2470 3786 7.337184 TGTTGTCTATGTTTGACCAACTTTACA 59.663 33.333 0.00 0.00 36.21 2.41
2471 3787 7.490962 TGTCTATGTTTGACCAACTTTACAG 57.509 36.000 0.00 0.00 36.21 2.74
2474 3790 5.590530 ATGTTTGACCAACTTTACAGCAA 57.409 34.783 0.00 0.00 36.21 3.91
2475 3791 5.392767 TGTTTGACCAACTTTACAGCAAA 57.607 34.783 0.00 0.00 36.21 3.68
2476 3792 5.784177 TGTTTGACCAACTTTACAGCAAAA 58.216 33.333 0.00 0.00 36.21 2.44
2477 3793 6.402222 TGTTTGACCAACTTTACAGCAAAAT 58.598 32.000 0.00 0.00 36.21 1.82
2478 3794 7.548097 TGTTTGACCAACTTTACAGCAAAATA 58.452 30.769 0.00 0.00 36.21 1.40
2479 3795 8.200792 TGTTTGACCAACTTTACAGCAAAATAT 58.799 29.630 0.00 0.00 36.21 1.28
2480 3796 9.685828 GTTTGACCAACTTTACAGCAAAATATA 57.314 29.630 0.00 0.00 31.92 0.86
2591 3907 9.249053 TGATATTTTTGTCTATAAACTTGGCCA 57.751 29.630 0.00 0.00 0.00 5.36
2594 3910 8.601845 ATTTTTGTCTATAAACTTGGCCAAAC 57.398 30.769 20.91 12.48 0.00 2.93
2595 3911 6.969993 TTTGTCTATAAACTTGGCCAAACT 57.030 33.333 20.91 6.38 0.00 2.66
2596 3912 6.969993 TTGTCTATAAACTTGGCCAAACTT 57.030 33.333 20.91 17.05 0.00 2.66
2597 3913 8.466617 TTTGTCTATAAACTTGGCCAAACTTA 57.533 30.769 20.91 18.60 0.00 2.24
2598 3914 7.681939 TGTCTATAAACTTGGCCAAACTTAG 57.318 36.000 20.91 9.94 0.00 2.18
2599 3915 7.455058 TGTCTATAAACTTGGCCAAACTTAGA 58.545 34.615 20.91 16.82 0.00 2.10
2600 3916 7.606456 TGTCTATAAACTTGGCCAAACTTAGAG 59.394 37.037 20.91 22.32 0.00 2.43
2601 3917 7.822822 GTCTATAAACTTGGCCAAACTTAGAGA 59.177 37.037 25.50 25.50 0.00 3.10
2602 3918 8.380099 TCTATAAACTTGGCCAAACTTAGAGAA 58.620 33.333 26.33 16.84 0.00 2.87
2603 3919 5.774498 AAACTTGGCCAAACTTAGAGAAG 57.226 39.130 20.91 5.88 38.76 2.85
2647 3963 9.720769 ATAATACACCTTATATTGAGGAAACGG 57.279 33.333 10.81 0.00 37.72 4.44
2656 3972 1.553706 TGAGGAAACGGAGGGAGTAC 58.446 55.000 0.00 0.00 0.00 2.73
2679 4104 4.553330 AGTACACAGGACGAATTTCCAT 57.447 40.909 0.00 0.00 38.25 3.41
2721 4150 7.309770 ACATCTTAAGAAAGAGTTCAGGTCT 57.690 36.000 9.71 0.00 44.79 3.85
3267 4706 3.067091 CCTGCAGGCTGAGTGTCT 58.933 61.111 22.33 0.00 0.00 3.41
3284 4726 2.291996 TGTCTAGCCAAGCCCAGTAGTA 60.292 50.000 0.00 0.00 0.00 1.82
3304 4746 0.521659 CTCGTCTCGCGGTTCTTCTC 60.522 60.000 6.13 0.00 41.72 2.87
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 54 1.671054 GAAGCTTGCAGGGCGTGTA 60.671 57.895 2.10 0.73 34.52 2.90
164 169 4.131088 GACGACTCCGGCACCTCC 62.131 72.222 0.00 0.00 44.91 4.30
247 255 4.115199 GCCCCCTCTTCATGCCGT 62.115 66.667 0.00 0.00 0.00 5.68
537 552 1.080093 GAGTTGGACGTGCGATCCA 60.080 57.895 0.00 10.28 44.74 3.41
576 591 1.067364 TGTCTTCAGCGGACGTGTAAA 59.933 47.619 0.00 0.00 36.58 2.01
579 594 0.179094 TTTGTCTTCAGCGGACGTGT 60.179 50.000 0.00 0.00 36.58 4.49
584 599 2.080286 GCTAGTTTGTCTTCAGCGGA 57.920 50.000 0.00 0.00 0.00 5.54
685 704 4.877251 TGCTAACCAGTTGACTACGTTTTT 59.123 37.500 0.00 0.00 0.00 1.94
686 705 4.444536 TGCTAACCAGTTGACTACGTTTT 58.555 39.130 0.00 0.00 0.00 2.43
687 706 4.062677 TGCTAACCAGTTGACTACGTTT 57.937 40.909 0.00 0.00 0.00 3.60
688 707 3.738830 TGCTAACCAGTTGACTACGTT 57.261 42.857 0.00 2.57 0.00 3.99
689 708 3.738830 TTGCTAACCAGTTGACTACGT 57.261 42.857 0.00 0.00 0.00 3.57
690 709 3.303495 CGATTGCTAACCAGTTGACTACG 59.697 47.826 0.00 0.00 0.00 3.51
691 710 4.243270 ACGATTGCTAACCAGTTGACTAC 58.757 43.478 0.00 0.00 0.00 2.73
692 711 4.491676 GACGATTGCTAACCAGTTGACTA 58.508 43.478 0.00 0.00 0.00 2.59
693 712 3.326747 GACGATTGCTAACCAGTTGACT 58.673 45.455 0.00 0.00 0.00 3.41
694 713 2.092211 CGACGATTGCTAACCAGTTGAC 59.908 50.000 0.00 0.00 0.00 3.18
695 714 2.288579 ACGACGATTGCTAACCAGTTGA 60.289 45.455 0.00 0.00 0.00 3.18
696 715 2.066262 ACGACGATTGCTAACCAGTTG 58.934 47.619 0.00 0.00 0.00 3.16
697 716 2.450609 ACGACGATTGCTAACCAGTT 57.549 45.000 0.00 0.00 0.00 3.16
698 717 2.029290 AGAACGACGATTGCTAACCAGT 60.029 45.455 0.00 0.00 0.00 4.00
699 718 2.599082 GAGAACGACGATTGCTAACCAG 59.401 50.000 0.00 0.00 0.00 4.00
700 719 2.029739 TGAGAACGACGATTGCTAACCA 60.030 45.455 0.00 0.00 0.00 3.67
701 720 2.344741 GTGAGAACGACGATTGCTAACC 59.655 50.000 0.00 0.00 0.00 2.85
702 721 2.344741 GGTGAGAACGACGATTGCTAAC 59.655 50.000 0.00 0.00 0.00 2.34
703 722 2.029739 TGGTGAGAACGACGATTGCTAA 60.030 45.455 0.00 0.00 0.00 3.09
704 723 1.542472 TGGTGAGAACGACGATTGCTA 59.458 47.619 0.00 0.00 0.00 3.49
705 724 0.317160 TGGTGAGAACGACGATTGCT 59.683 50.000 0.00 0.00 0.00 3.91
706 725 0.438830 GTGGTGAGAACGACGATTGC 59.561 55.000 0.00 0.00 0.00 3.56
707 726 1.068474 GGTGGTGAGAACGACGATTG 58.932 55.000 0.00 0.00 0.00 2.67
708 727 0.966920 AGGTGGTGAGAACGACGATT 59.033 50.000 0.00 0.00 0.00 3.34
709 728 0.243907 CAGGTGGTGAGAACGACGAT 59.756 55.000 0.00 0.00 0.00 3.73
710 729 0.820482 TCAGGTGGTGAGAACGACGA 60.820 55.000 0.00 0.00 0.00 4.20
711 730 0.031585 TTCAGGTGGTGAGAACGACG 59.968 55.000 0.00 0.00 36.21 5.12
712 731 2.457366 ATTCAGGTGGTGAGAACGAC 57.543 50.000 0.00 0.00 36.21 4.34
713 732 2.367241 TCAATTCAGGTGGTGAGAACGA 59.633 45.455 0.00 0.00 36.21 3.85
714 733 2.766313 TCAATTCAGGTGGTGAGAACG 58.234 47.619 0.00 0.00 36.21 3.95
715 734 3.691609 GGATCAATTCAGGTGGTGAGAAC 59.308 47.826 0.00 0.00 36.21 3.01
716 735 3.619733 CGGATCAATTCAGGTGGTGAGAA 60.620 47.826 0.00 0.00 36.21 2.87
717 736 2.093500 CGGATCAATTCAGGTGGTGAGA 60.093 50.000 0.00 0.00 36.21 3.27
718 737 2.093500 TCGGATCAATTCAGGTGGTGAG 60.093 50.000 0.00 0.00 36.21 3.51
719 738 1.905894 TCGGATCAATTCAGGTGGTGA 59.094 47.619 0.00 0.00 0.00 4.02
720 739 2.401583 TCGGATCAATTCAGGTGGTG 57.598 50.000 0.00 0.00 0.00 4.17
721 740 3.652057 ATTCGGATCAATTCAGGTGGT 57.348 42.857 0.00 0.00 0.00 4.16
722 741 4.202441 AGAATTCGGATCAATTCAGGTGG 58.798 43.478 16.58 0.00 42.86 4.61
723 742 5.824904 AAGAATTCGGATCAATTCAGGTG 57.175 39.130 16.58 0.00 42.86 4.00
724 743 5.945784 TCAAAGAATTCGGATCAATTCAGGT 59.054 36.000 16.58 3.72 42.86 4.00
725 744 6.261118 GTCAAAGAATTCGGATCAATTCAGG 58.739 40.000 16.58 8.48 42.86 3.86
726 745 6.127925 TGGTCAAAGAATTCGGATCAATTCAG 60.128 38.462 16.58 8.97 42.86 3.02
727 746 5.709631 TGGTCAAAGAATTCGGATCAATTCA 59.290 36.000 16.58 0.00 42.86 2.57
728 747 6.194796 TGGTCAAAGAATTCGGATCAATTC 57.805 37.500 9.46 9.46 41.37 2.17
729 748 6.588719 TTGGTCAAAGAATTCGGATCAATT 57.411 33.333 15.13 0.00 30.58 2.32
730 749 6.389906 GTTTGGTCAAAGAATTCGGATCAAT 58.610 36.000 17.99 0.00 34.04 2.57
731 750 5.278758 GGTTTGGTCAAAGAATTCGGATCAA 60.279 40.000 15.13 15.13 32.73 2.57
732 751 4.217550 GGTTTGGTCAAAGAATTCGGATCA 59.782 41.667 0.00 3.45 0.00 2.92
733 752 4.217550 TGGTTTGGTCAAAGAATTCGGATC 59.782 41.667 0.00 0.79 0.00 3.36
734 753 4.148838 TGGTTTGGTCAAAGAATTCGGAT 58.851 39.130 0.00 0.00 0.00 4.18
735 754 3.556999 TGGTTTGGTCAAAGAATTCGGA 58.443 40.909 0.00 0.00 0.00 4.55
736 755 4.236935 CATGGTTTGGTCAAAGAATTCGG 58.763 43.478 0.00 0.00 0.00 4.30
737 756 4.870363 ACATGGTTTGGTCAAAGAATTCG 58.130 39.130 0.00 0.00 0.00 3.34
738 757 7.214467 TCTACATGGTTTGGTCAAAGAATTC 57.786 36.000 0.00 0.00 0.00 2.17
739 758 7.433680 GTTCTACATGGTTTGGTCAAAGAATT 58.566 34.615 0.00 0.00 0.00 2.17
740 759 6.293955 CGTTCTACATGGTTTGGTCAAAGAAT 60.294 38.462 0.00 0.00 0.00 2.40
741 760 5.008217 CGTTCTACATGGTTTGGTCAAAGAA 59.992 40.000 0.00 0.00 0.00 2.52
742 761 4.513692 CGTTCTACATGGTTTGGTCAAAGA 59.486 41.667 0.00 0.00 0.00 2.52
743 762 4.320202 CCGTTCTACATGGTTTGGTCAAAG 60.320 45.833 0.00 0.00 0.00 2.77
744 763 3.566322 CCGTTCTACATGGTTTGGTCAAA 59.434 43.478 0.00 0.00 0.00 2.69
745 764 3.142951 CCGTTCTACATGGTTTGGTCAA 58.857 45.455 0.00 0.00 0.00 3.18
746 765 2.369203 TCCGTTCTACATGGTTTGGTCA 59.631 45.455 0.00 0.00 32.49 4.02
747 766 3.048337 TCCGTTCTACATGGTTTGGTC 57.952 47.619 0.00 0.00 32.49 4.02
748 767 3.713826 ATCCGTTCTACATGGTTTGGT 57.286 42.857 0.00 0.00 32.49 3.67
749 768 4.355543 CAATCCGTTCTACATGGTTTGG 57.644 45.455 0.00 0.00 37.51 3.28
750 769 3.128589 CCCAATCCGTTCTACATGGTTTG 59.871 47.826 0.00 0.00 39.58 2.93
751 770 3.352648 CCCAATCCGTTCTACATGGTTT 58.647 45.455 0.00 0.00 32.49 3.27
752 771 2.944094 GCCCAATCCGTTCTACATGGTT 60.944 50.000 0.00 0.00 32.49 3.67
753 772 1.408266 GCCCAATCCGTTCTACATGGT 60.408 52.381 0.00 0.00 32.49 3.55
754 773 1.308998 GCCCAATCCGTTCTACATGG 58.691 55.000 0.00 0.00 0.00 3.66
755 774 1.670811 GTGCCCAATCCGTTCTACATG 59.329 52.381 0.00 0.00 0.00 3.21
756 775 1.280710 TGTGCCCAATCCGTTCTACAT 59.719 47.619 0.00 0.00 0.00 2.29
757 776 0.687920 TGTGCCCAATCCGTTCTACA 59.312 50.000 0.00 0.00 0.00 2.74
758 777 1.066430 TCTGTGCCCAATCCGTTCTAC 60.066 52.381 0.00 0.00 0.00 2.59
759 778 1.066430 GTCTGTGCCCAATCCGTTCTA 60.066 52.381 0.00 0.00 0.00 2.10
760 779 0.321653 GTCTGTGCCCAATCCGTTCT 60.322 55.000 0.00 0.00 0.00 3.01
761 780 1.635663 CGTCTGTGCCCAATCCGTTC 61.636 60.000 0.00 0.00 0.00 3.95
762 781 1.671054 CGTCTGTGCCCAATCCGTT 60.671 57.895 0.00 0.00 0.00 4.44
763 782 1.899437 ATCGTCTGTGCCCAATCCGT 61.899 55.000 0.00 0.00 0.00 4.69
764 783 0.744414 AATCGTCTGTGCCCAATCCG 60.744 55.000 0.00 0.00 0.00 4.18
765 784 0.734889 CAATCGTCTGTGCCCAATCC 59.265 55.000 0.00 0.00 0.00 3.01
766 785 1.453155 ACAATCGTCTGTGCCCAATC 58.547 50.000 0.00 0.00 0.00 2.67
767 786 1.909700 AACAATCGTCTGTGCCCAAT 58.090 45.000 0.00 0.00 0.00 3.16
768 787 1.686355 AAACAATCGTCTGTGCCCAA 58.314 45.000 0.00 0.00 0.00 4.12
769 788 1.686355 AAAACAATCGTCTGTGCCCA 58.314 45.000 0.00 0.00 0.00 5.36
770 789 3.181500 GGATAAAACAATCGTCTGTGCCC 60.181 47.826 0.00 0.00 0.00 5.36
771 790 3.181500 GGGATAAAACAATCGTCTGTGCC 60.181 47.826 0.00 0.00 0.00 5.01
772 791 3.181500 GGGGATAAAACAATCGTCTGTGC 60.181 47.826 0.00 0.00 0.00 4.57
773 792 3.377172 GGGGGATAAAACAATCGTCTGTG 59.623 47.826 0.00 0.00 0.00 3.66
774 793 3.009695 TGGGGGATAAAACAATCGTCTGT 59.990 43.478 0.00 0.00 0.00 3.41
775 794 3.616219 TGGGGGATAAAACAATCGTCTG 58.384 45.455 0.00 0.00 0.00 3.51
776 795 3.265995 ACTGGGGGATAAAACAATCGTCT 59.734 43.478 0.00 0.00 0.00 4.18
777 796 3.377172 CACTGGGGGATAAAACAATCGTC 59.623 47.826 0.00 0.00 0.00 4.20
778 797 3.352648 CACTGGGGGATAAAACAATCGT 58.647 45.455 0.00 0.00 0.00 3.73
779 798 2.687935 CCACTGGGGGATAAAACAATCG 59.312 50.000 0.00 0.00 0.00 3.34
780 799 2.430694 GCCACTGGGGGATAAAACAATC 59.569 50.000 0.00 0.00 37.04 2.67
781 800 2.466846 GCCACTGGGGGATAAAACAAT 58.533 47.619 0.00 0.00 37.04 2.71
782 801 1.551329 GGCCACTGGGGGATAAAACAA 60.551 52.381 0.00 0.00 37.04 2.83
783 802 0.040499 GGCCACTGGGGGATAAAACA 59.960 55.000 0.00 0.00 37.04 2.83
784 803 0.335019 AGGCCACTGGGGGATAAAAC 59.665 55.000 5.01 0.00 37.04 2.43
785 804 1.089123 AAGGCCACTGGGGGATAAAA 58.911 50.000 5.01 0.00 37.04 1.52
786 805 0.334676 CAAGGCCACTGGGGGATAAA 59.665 55.000 5.01 0.00 37.04 1.40
787 806 2.006748 CAAGGCCACTGGGGGATAA 58.993 57.895 5.01 0.00 37.04 1.75
788 807 2.689691 GCAAGGCCACTGGGGGATA 61.690 63.158 5.01 0.00 37.04 2.59
789 808 4.066139 GCAAGGCCACTGGGGGAT 62.066 66.667 5.01 0.00 37.04 3.85
790 809 3.881926 TAGCAAGGCCACTGGGGGA 62.882 63.158 5.01 0.00 37.04 4.81
791 810 2.228841 AATAGCAAGGCCACTGGGGG 62.229 60.000 5.01 0.00 37.04 5.40
792 811 1.039233 CAATAGCAAGGCCACTGGGG 61.039 60.000 5.01 0.00 40.85 4.96
793 812 1.039233 CCAATAGCAAGGCCACTGGG 61.039 60.000 5.01 0.00 37.18 4.45
794 813 1.669999 GCCAATAGCAAGGCCACTGG 61.670 60.000 5.01 0.00 45.18 4.00
795 814 1.811860 GCCAATAGCAAGGCCACTG 59.188 57.895 5.01 2.32 45.18 3.66
796 815 4.344237 GCCAATAGCAAGGCCACT 57.656 55.556 5.01 1.03 45.18 4.00
805 824 1.541147 TGAAAGTGTGCAGCCAATAGC 59.459 47.619 0.00 0.00 44.25 2.97
806 825 3.503363 TCTTGAAAGTGTGCAGCCAATAG 59.497 43.478 0.00 0.00 0.00 1.73
807 826 3.253188 GTCTTGAAAGTGTGCAGCCAATA 59.747 43.478 0.00 0.00 0.00 1.90
808 827 2.035066 GTCTTGAAAGTGTGCAGCCAAT 59.965 45.455 0.00 0.00 0.00 3.16
809 828 1.405105 GTCTTGAAAGTGTGCAGCCAA 59.595 47.619 0.00 0.00 0.00 4.52
810 829 1.024271 GTCTTGAAAGTGTGCAGCCA 58.976 50.000 0.00 0.00 0.00 4.75
811 830 0.040958 CGTCTTGAAAGTGTGCAGCC 60.041 55.000 0.00 0.00 0.00 4.85
812 831 0.657840 ACGTCTTGAAAGTGTGCAGC 59.342 50.000 0.00 0.00 0.00 5.25
813 832 2.097396 CGTACGTCTTGAAAGTGTGCAG 60.097 50.000 7.22 0.00 0.00 4.41
814 833 1.855978 CGTACGTCTTGAAAGTGTGCA 59.144 47.619 7.22 0.00 0.00 4.57
815 834 1.396815 GCGTACGTCTTGAAAGTGTGC 60.397 52.381 17.90 0.00 0.00 4.57
816 835 1.136992 CGCGTACGTCTTGAAAGTGTG 60.137 52.381 17.90 0.00 33.53 3.82
817 836 1.126079 CGCGTACGTCTTGAAAGTGT 58.874 50.000 17.90 0.00 33.53 3.55
818 837 3.901225 CGCGTACGTCTTGAAAGTG 57.099 52.632 17.90 0.00 33.53 3.16
830 849 1.202256 TGTGGATGATCTGACGCGTAC 60.202 52.381 13.97 6.75 0.00 3.67
831 850 1.099689 TGTGGATGATCTGACGCGTA 58.900 50.000 13.97 0.00 0.00 4.42
832 851 0.246360 TTGTGGATGATCTGACGCGT 59.754 50.000 13.85 13.85 0.00 6.01
833 852 1.325640 CTTTGTGGATGATCTGACGCG 59.674 52.381 3.53 3.53 0.00 6.01
834 853 2.350522 ACTTTGTGGATGATCTGACGC 58.649 47.619 0.00 0.00 0.00 5.19
835 854 3.996363 TCAACTTTGTGGATGATCTGACG 59.004 43.478 0.00 0.00 0.00 4.35
836 855 4.756642 TGTCAACTTTGTGGATGATCTGAC 59.243 41.667 0.00 0.00 33.05 3.51
837 856 4.971939 TGTCAACTTTGTGGATGATCTGA 58.028 39.130 0.00 0.00 0.00 3.27
838 857 5.694231 TTGTCAACTTTGTGGATGATCTG 57.306 39.130 0.00 0.00 0.00 2.90
839 858 5.122869 CGATTGTCAACTTTGTGGATGATCT 59.877 40.000 0.00 0.00 0.00 2.75
840 859 5.122239 TCGATTGTCAACTTTGTGGATGATC 59.878 40.000 0.00 0.00 0.00 2.92
841 860 5.003160 TCGATTGTCAACTTTGTGGATGAT 58.997 37.500 0.00 0.00 0.00 2.45
842 861 4.384940 TCGATTGTCAACTTTGTGGATGA 58.615 39.130 0.00 0.00 0.00 2.92
843 862 4.452114 TCTCGATTGTCAACTTTGTGGATG 59.548 41.667 0.00 0.00 0.00 3.51
844 863 4.641396 TCTCGATTGTCAACTTTGTGGAT 58.359 39.130 0.00 0.00 0.00 3.41
845 864 4.066646 TCTCGATTGTCAACTTTGTGGA 57.933 40.909 0.00 0.00 0.00 4.02
846 865 6.313658 TGATATCTCGATTGTCAACTTTGTGG 59.686 38.462 3.98 0.00 0.00 4.17
847 866 7.276438 TCTGATATCTCGATTGTCAACTTTGTG 59.724 37.037 3.98 0.00 0.00 3.33
848 867 7.323420 TCTGATATCTCGATTGTCAACTTTGT 58.677 34.615 3.98 0.00 0.00 2.83
849 868 7.761651 TCTGATATCTCGATTGTCAACTTTG 57.238 36.000 3.98 0.00 0.00 2.77
850 869 8.777865 TTTCTGATATCTCGATTGTCAACTTT 57.222 30.769 3.98 0.00 0.00 2.66
851 870 8.824781 CATTTCTGATATCTCGATTGTCAACTT 58.175 33.333 3.98 0.00 0.00 2.66
852 871 7.984050 ACATTTCTGATATCTCGATTGTCAACT 59.016 33.333 3.98 0.00 0.00 3.16
853 872 8.136057 ACATTTCTGATATCTCGATTGTCAAC 57.864 34.615 3.98 0.00 0.00 3.18
854 873 7.168135 CGACATTTCTGATATCTCGATTGTCAA 59.832 37.037 21.72 0.00 32.22 3.18
855 874 6.638468 CGACATTTCTGATATCTCGATTGTCA 59.362 38.462 21.72 0.00 32.22 3.58
856 875 6.858478 TCGACATTTCTGATATCTCGATTGTC 59.142 38.462 3.98 13.43 0.00 3.18
857 876 6.739112 TCGACATTTCTGATATCTCGATTGT 58.261 36.000 3.98 7.55 0.00 2.71
858 877 7.629027 TTCGACATTTCTGATATCTCGATTG 57.371 36.000 10.57 7.63 28.84 2.67
859 878 8.084684 TCATTCGACATTTCTGATATCTCGATT 58.915 33.333 10.57 6.04 28.84 3.34
860 879 7.540400 GTCATTCGACATTTCTGATATCTCGAT 59.460 37.037 10.57 1.70 42.13 3.59
861 880 6.858478 GTCATTCGACATTTCTGATATCTCGA 59.142 38.462 3.98 5.65 42.13 4.04
862 881 6.183359 CGTCATTCGACATTTCTGATATCTCG 60.183 42.308 3.98 3.27 42.74 4.04
863 882 6.399459 GCGTCATTCGACATTTCTGATATCTC 60.399 42.308 3.98 0.00 42.74 2.75
864 883 5.403766 GCGTCATTCGACATTTCTGATATCT 59.596 40.000 3.98 0.00 42.74 1.98
865 884 5.175673 TGCGTCATTCGACATTTCTGATATC 59.824 40.000 0.00 0.00 42.74 1.63
866 885 5.049828 TGCGTCATTCGACATTTCTGATAT 58.950 37.500 0.00 0.00 42.74 1.63
867 886 4.429108 TGCGTCATTCGACATTTCTGATA 58.571 39.130 0.00 0.00 42.74 2.15
868 887 3.261580 TGCGTCATTCGACATTTCTGAT 58.738 40.909 0.00 0.00 42.74 2.90
869 888 2.682836 TGCGTCATTCGACATTTCTGA 58.317 42.857 0.00 0.00 42.74 3.27
870 889 3.663464 ATGCGTCATTCGACATTTCTG 57.337 42.857 0.00 0.00 42.74 3.02
871 890 4.180817 TGTATGCGTCATTCGACATTTCT 58.819 39.130 0.00 0.00 42.74 2.52
872 891 4.508971 CTGTATGCGTCATTCGACATTTC 58.491 43.478 0.00 0.00 42.74 2.17
873 892 3.242413 GCTGTATGCGTCATTCGACATTT 60.242 43.478 0.00 0.00 42.74 2.32
874 893 2.285220 GCTGTATGCGTCATTCGACATT 59.715 45.455 0.00 0.00 42.74 2.71
875 894 1.860950 GCTGTATGCGTCATTCGACAT 59.139 47.619 0.00 0.00 42.74 3.06
876 895 1.277326 GCTGTATGCGTCATTCGACA 58.723 50.000 0.00 0.00 42.74 4.35
887 906 0.179145 CTTTGCCTGCAGCTGTATGC 60.179 55.000 21.85 21.85 46.68 3.14
888 907 0.454600 CCTTTGCCTGCAGCTGTATG 59.545 55.000 16.64 9.29 44.23 2.39
889 908 0.329261 TCCTTTGCCTGCAGCTGTAT 59.671 50.000 16.64 0.00 44.23 2.29
890 909 0.110295 TTCCTTTGCCTGCAGCTGTA 59.890 50.000 16.64 10.46 44.23 2.74
891 910 1.152694 TTCCTTTGCCTGCAGCTGT 60.153 52.632 16.64 0.00 44.23 4.40
892 911 1.585006 CTTCCTTTGCCTGCAGCTG 59.415 57.895 10.11 10.11 44.23 4.24
893 912 2.273912 GCTTCCTTTGCCTGCAGCT 61.274 57.895 8.66 0.00 44.23 4.24
894 913 2.091102 TTGCTTCCTTTGCCTGCAGC 62.091 55.000 8.66 4.57 44.14 5.25
895 914 0.319297 GTTGCTTCCTTTGCCTGCAG 60.319 55.000 6.78 6.78 35.02 4.41
896 915 1.042003 TGTTGCTTCCTTTGCCTGCA 61.042 50.000 0.00 0.00 0.00 4.41
897 916 0.598419 GTGTTGCTTCCTTTGCCTGC 60.598 55.000 0.00 0.00 0.00 4.85
898 917 0.746063 TGTGTTGCTTCCTTTGCCTG 59.254 50.000 0.00 0.00 0.00 4.85
899 918 1.708341 ATGTGTTGCTTCCTTTGCCT 58.292 45.000 0.00 0.00 0.00 4.75
900 919 2.224018 TGAATGTGTTGCTTCCTTTGCC 60.224 45.455 0.00 0.00 0.00 4.52
901 920 3.096489 TGAATGTGTTGCTTCCTTTGC 57.904 42.857 0.00 0.00 0.00 3.68
902 921 4.240096 GGATGAATGTGTTGCTTCCTTTG 58.760 43.478 0.00 0.00 0.00 2.77
903 922 3.259123 GGGATGAATGTGTTGCTTCCTTT 59.741 43.478 0.00 0.00 0.00 3.11
904 923 2.827921 GGGATGAATGTGTTGCTTCCTT 59.172 45.455 0.00 0.00 0.00 3.36
905 924 2.450476 GGGATGAATGTGTTGCTTCCT 58.550 47.619 0.00 0.00 0.00 3.36
906 925 1.478105 GGGGATGAATGTGTTGCTTCC 59.522 52.381 0.00 0.00 0.00 3.46
907 926 1.133025 CGGGGATGAATGTGTTGCTTC 59.867 52.381 0.00 0.00 0.00 3.86
908 927 1.176527 CGGGGATGAATGTGTTGCTT 58.823 50.000 0.00 0.00 0.00 3.91
909 928 0.680921 CCGGGGATGAATGTGTTGCT 60.681 55.000 0.00 0.00 0.00 3.91
910 929 0.679640 TCCGGGGATGAATGTGTTGC 60.680 55.000 0.00 0.00 0.00 4.17
911 930 1.094785 GTCCGGGGATGAATGTGTTG 58.905 55.000 0.00 0.00 0.00 3.33
912 931 0.695924 TGTCCGGGGATGAATGTGTT 59.304 50.000 0.00 0.00 0.00 3.32
913 932 0.035439 GTGTCCGGGGATGAATGTGT 60.035 55.000 0.00 0.00 0.00 3.72
914 933 0.253044 AGTGTCCGGGGATGAATGTG 59.747 55.000 0.00 0.00 0.00 3.21
915 934 0.541863 GAGTGTCCGGGGATGAATGT 59.458 55.000 0.00 0.00 0.00 2.71
916 935 0.530650 CGAGTGTCCGGGGATGAATG 60.531 60.000 0.00 0.00 0.00 2.67
917 936 0.686441 TCGAGTGTCCGGGGATGAAT 60.686 55.000 0.00 0.00 0.00 2.57
918 937 0.901114 TTCGAGTGTCCGGGGATGAA 60.901 55.000 0.00 0.00 0.00 2.57
919 938 0.901114 TTTCGAGTGTCCGGGGATGA 60.901 55.000 0.00 0.00 0.00 2.92
920 939 0.460284 CTTTCGAGTGTCCGGGGATG 60.460 60.000 0.00 0.00 0.00 3.51
921 940 1.614241 CCTTTCGAGTGTCCGGGGAT 61.614 60.000 0.00 0.00 0.00 3.85
922 941 2.280552 CCTTTCGAGTGTCCGGGGA 61.281 63.158 0.00 0.00 0.00 4.81
923 942 2.264794 CCTTTCGAGTGTCCGGGG 59.735 66.667 0.00 0.00 0.00 5.73
924 943 1.080025 GTCCTTTCGAGTGTCCGGG 60.080 63.158 0.00 0.00 0.00 5.73
925 944 1.443872 CGTCCTTTCGAGTGTCCGG 60.444 63.158 0.00 0.00 0.00 5.14
926 945 2.087009 GCGTCCTTTCGAGTGTCCG 61.087 63.158 0.00 0.00 0.00 4.79
927 946 0.733223 GAGCGTCCTTTCGAGTGTCC 60.733 60.000 0.00 0.00 0.00 4.02
928 947 0.733223 GGAGCGTCCTTTCGAGTGTC 60.733 60.000 0.00 0.00 32.53 3.67
929 948 1.289380 GGAGCGTCCTTTCGAGTGT 59.711 57.895 0.00 0.00 32.53 3.55
930 949 0.319555 TTGGAGCGTCCTTTCGAGTG 60.320 55.000 5.77 0.00 37.46 3.51
931 950 0.038159 CTTGGAGCGTCCTTTCGAGT 60.038 55.000 5.77 0.00 37.46 4.18
932 951 0.038159 ACTTGGAGCGTCCTTTCGAG 60.038 55.000 5.77 0.00 37.46 4.04
933 952 0.038526 GACTTGGAGCGTCCTTTCGA 60.039 55.000 5.77 0.00 37.46 3.71
934 953 1.014564 GGACTTGGAGCGTCCTTTCG 61.015 60.000 2.11 0.00 45.87 3.46
935 954 2.842320 GGACTTGGAGCGTCCTTTC 58.158 57.895 2.11 0.76 45.87 2.62
940 959 0.390472 CTCCTTGGACTTGGAGCGTC 60.390 60.000 0.00 0.00 42.62 5.19
941 960 1.674057 CTCCTTGGACTTGGAGCGT 59.326 57.895 0.00 0.00 42.62 5.07
942 961 1.078848 CCTCCTTGGACTTGGAGCG 60.079 63.158 3.68 0.00 46.23 5.03
943 962 1.377856 GCCTCCTTGGACTTGGAGC 60.378 63.158 3.68 0.00 46.23 4.70
944 963 0.401738 TTGCCTCCTTGGACTTGGAG 59.598 55.000 0.00 0.00 46.91 3.86
945 964 0.110486 GTTGCCTCCTTGGACTTGGA 59.890 55.000 0.00 0.00 38.35 3.53
946 965 0.178992 TGTTGCCTCCTTGGACTTGG 60.179 55.000 0.00 0.00 38.35 3.61
947 966 1.815003 GATGTTGCCTCCTTGGACTTG 59.185 52.381 0.00 0.00 38.35 3.16
948 967 1.707427 AGATGTTGCCTCCTTGGACTT 59.293 47.619 0.00 0.00 38.35 3.01
949 968 1.280421 GAGATGTTGCCTCCTTGGACT 59.720 52.381 0.00 0.00 38.35 3.85
950 969 1.680249 GGAGATGTTGCCTCCTTGGAC 60.680 57.143 0.00 0.00 45.18 4.02
951 970 0.620556 GGAGATGTTGCCTCCTTGGA 59.379 55.000 0.00 0.00 45.18 3.53
952 971 3.181526 GGAGATGTTGCCTCCTTGG 57.818 57.895 0.00 0.00 45.18 3.61
957 976 1.202746 GGGATCAGGAGATGTTGCCTC 60.203 57.143 0.00 0.00 36.45 4.70
958 977 0.842635 GGGATCAGGAGATGTTGCCT 59.157 55.000 0.00 0.00 36.45 4.75
959 978 0.179006 GGGGATCAGGAGATGTTGCC 60.179 60.000 0.00 0.00 38.15 4.52
960 979 0.179006 GGGGGATCAGGAGATGTTGC 60.179 60.000 0.00 0.00 33.72 4.17
961 980 0.107456 CGGGGGATCAGGAGATGTTG 59.893 60.000 0.00 0.00 33.72 3.33
962 981 0.031111 TCGGGGGATCAGGAGATGTT 60.031 55.000 0.00 0.00 33.72 2.71
963 982 0.031111 TTCGGGGGATCAGGAGATGT 60.031 55.000 0.00 0.00 33.72 3.06
964 983 0.683973 CTTCGGGGGATCAGGAGATG 59.316 60.000 0.00 0.00 33.72 2.90
965 984 0.266152 ACTTCGGGGGATCAGGAGAT 59.734 55.000 0.00 0.00 37.13 2.75
966 985 0.042731 AACTTCGGGGGATCAGGAGA 59.957 55.000 0.00 0.00 0.00 3.71
967 986 0.179000 CAACTTCGGGGGATCAGGAG 59.821 60.000 0.00 0.00 0.00 3.69
968 987 1.910580 GCAACTTCGGGGGATCAGGA 61.911 60.000 0.00 0.00 0.00 3.86
969 988 1.452108 GCAACTTCGGGGGATCAGG 60.452 63.158 0.00 0.00 0.00 3.86
970 989 0.745845 CAGCAACTTCGGGGGATCAG 60.746 60.000 0.00 0.00 0.00 2.90
971 990 1.299648 CAGCAACTTCGGGGGATCA 59.700 57.895 0.00 0.00 0.00 2.92
972 991 2.115291 GCAGCAACTTCGGGGGATC 61.115 63.158 0.00 0.00 0.00 3.36
973 992 2.044946 GCAGCAACTTCGGGGGAT 60.045 61.111 0.00 0.00 0.00 3.85
974 993 2.829384 AAGCAGCAACTTCGGGGGA 61.829 57.895 0.00 0.00 0.00 4.81
980 999 0.179179 GGCGATCAAGCAGCAACTTC 60.179 55.000 0.00 0.00 39.27 3.01
984 1003 1.659622 CCATGGCGATCAAGCAGCAA 61.660 55.000 0.00 0.00 39.27 3.91
997 1016 4.261781 GCTGCTAAGCGCCATGGC 62.262 66.667 27.67 27.67 40.27 4.40
1005 1024 2.203126 AGGATGCCGCTGCTAAGC 60.203 61.111 0.70 0.00 46.66 3.09
1032 1051 6.015856 AGCTGAGCATATCGTACTTACTGATT 60.016 38.462 7.39 0.00 0.00 2.57
1036 1055 4.580995 ACAGCTGAGCATATCGTACTTACT 59.419 41.667 23.35 0.00 0.00 2.24
1043 1062 1.482182 TCCAACAGCTGAGCATATCGT 59.518 47.619 23.35 0.00 0.00 3.73
1044 1063 2.229675 TCCAACAGCTGAGCATATCG 57.770 50.000 23.35 0.00 0.00 2.92
1049 1068 3.374988 CGAATTAATCCAACAGCTGAGCA 59.625 43.478 23.35 0.00 0.00 4.26
1054 1073 3.347216 ACAGCGAATTAATCCAACAGCT 58.653 40.909 0.00 0.00 0.00 4.24
1056 1075 3.616821 TCGACAGCGAATTAATCCAACAG 59.383 43.478 0.00 0.00 44.78 3.16
1072 1091 4.461405 CAAAAACAGCTGAGAATCGACAG 58.539 43.478 23.35 6.24 38.61 3.51
1073 1092 3.250762 CCAAAAACAGCTGAGAATCGACA 59.749 43.478 23.35 0.00 38.61 4.35
1076 1095 2.554032 ACCCAAAAACAGCTGAGAATCG 59.446 45.455 23.35 3.78 38.61 3.34
1083 1102 2.957491 TGTCAACCCAAAAACAGCTG 57.043 45.000 13.48 13.48 0.00 4.24
1085 1104 3.733443 AGATGTCAACCCAAAAACAGC 57.267 42.857 0.00 0.00 0.00 4.40
1099 1123 1.198637 GCACTCCAACTGCAAGATGTC 59.801 52.381 0.00 0.00 34.53 3.06
1104 1128 0.820891 ACCAGCACTCCAACTGCAAG 60.821 55.000 0.00 0.00 37.08 4.01
1105 1129 0.819259 GACCAGCACTCCAACTGCAA 60.819 55.000 0.00 0.00 37.08 4.08
1119 1143 1.749063 TGTCACTATACCAGCGACCAG 59.251 52.381 0.00 0.00 35.78 4.00
1124 1148 1.476891 ACCACTGTCACTATACCAGCG 59.523 52.381 0.00 0.00 0.00 5.18
1128 1152 1.202382 GGCGACCACTGTCACTATACC 60.202 57.143 0.00 0.00 41.85 2.73
1130 1154 1.842052 TGGCGACCACTGTCACTATA 58.158 50.000 0.00 0.00 41.85 1.31
1144 1168 2.190841 TAGATGGCGATCGTGGCGA 61.191 57.895 17.81 0.00 41.13 5.54
1174 1198 1.676678 ATACATCTGCACGGCGACCT 61.677 55.000 16.62 0.00 0.00 3.85
1175 1199 1.215655 GATACATCTGCACGGCGACC 61.216 60.000 16.62 3.96 0.00 4.79
1258 1282 4.129737 TGGCTCTCGGCGTGCTAC 62.130 66.667 6.85 0.00 42.94 3.58
1259 1283 4.129737 GTGGCTCTCGGCGTGCTA 62.130 66.667 6.85 5.51 42.94 3.49
1276 1300 2.278206 CGTCCTCTGCGTCATCCG 60.278 66.667 0.00 0.00 40.40 4.18
1283 1307 1.297967 CATCTCGACGTCCTCTGCG 60.298 63.158 10.58 0.00 0.00 5.18
1286 1310 1.454111 CCCCATCTCGACGTCCTCT 60.454 63.158 10.58 0.00 0.00 3.69
1328 1352 4.373116 GGCCGCTCGTTCTGGACA 62.373 66.667 0.00 0.00 0.00 4.02
1589 1616 2.092882 GTACACGAGCGCCTTCACC 61.093 63.158 2.29 0.00 0.00 4.02
1631 1658 4.308458 CCGAACAGGTGCCGGTCA 62.308 66.667 1.90 0.00 38.55 4.02
1973 2021 4.147449 CGCCGACCCAGCATCTCA 62.147 66.667 0.00 0.00 0.00 3.27
2285 2385 3.491581 GTCATCGGACAACGTCACT 57.508 52.632 0.00 0.00 43.73 3.41
2319 2419 2.762745 GGTGAAAGCTGAAGAACCGTA 58.237 47.619 0.00 0.00 0.00 4.02
2384 3698 6.842676 AGGAATGGAGGGAGTATATTTCAAC 58.157 40.000 0.00 0.00 0.00 3.18
2423 3739 9.535878 ACAACAGTTGACTTTTTGAAAAACTAA 57.464 25.926 20.56 0.00 0.00 2.24
2427 3743 9.921637 ATAGACAACAGTTGACTTTTTGAAAAA 57.078 25.926 20.98 2.83 36.98 1.94
2428 3744 9.352784 CATAGACAACAGTTGACTTTTTGAAAA 57.647 29.630 20.98 3.80 36.98 2.29
2429 3745 8.519526 ACATAGACAACAGTTGACTTTTTGAAA 58.480 29.630 20.98 4.46 36.98 2.69
2438 3754 5.295787 TGGTCAAACATAGACAACAGTTGAC 59.704 40.000 20.56 13.83 37.74 3.18
2441 3757 5.885912 AGTTGGTCAAACATAGACAACAGTT 59.114 36.000 0.00 0.00 41.61 3.16
2445 3761 7.699566 TGTAAAGTTGGTCAAACATAGACAAC 58.300 34.615 0.00 0.00 41.61 3.32
2448 3764 6.017440 TGCTGTAAAGTTGGTCAAACATAGAC 60.017 38.462 0.00 0.00 41.61 2.59
2453 3769 5.392767 TTTGCTGTAAAGTTGGTCAAACA 57.607 34.783 0.00 0.00 41.61 2.83
2568 3884 9.699703 GTTTGGCCAAGTTTATAGACAAAAATA 57.300 29.630 19.48 0.00 0.00 1.40
2570 3886 7.787028 AGTTTGGCCAAGTTTATAGACAAAAA 58.213 30.769 19.48 0.00 0.00 1.94
2571 3887 7.354751 AGTTTGGCCAAGTTTATAGACAAAA 57.645 32.000 19.48 0.00 0.00 2.44
2574 3890 7.455058 TCTAAGTTTGGCCAAGTTTATAGACA 58.545 34.615 19.48 0.00 30.16 3.41
2575 3891 7.822822 TCTCTAAGTTTGGCCAAGTTTATAGAC 59.177 37.037 19.48 11.34 30.16 2.59
2576 3892 7.913789 TCTCTAAGTTTGGCCAAGTTTATAGA 58.086 34.615 19.48 21.15 30.16 1.98
2577 3893 8.561738 TTCTCTAAGTTTGGCCAAGTTTATAG 57.438 34.615 19.48 19.56 30.16 1.31
2578 3894 8.161425 ACTTCTCTAAGTTTGGCCAAGTTTATA 58.839 33.333 19.48 12.24 43.60 0.98
2581 3897 5.201243 ACTTCTCTAAGTTTGGCCAAGTTT 58.799 37.500 19.48 18.22 43.60 2.66
2582 3898 4.793201 ACTTCTCTAAGTTTGGCCAAGTT 58.207 39.130 19.48 17.90 43.60 2.66
2621 3937 9.720769 CCGTTTCCTCAATATAAGGTGTATTAT 57.279 33.333 4.45 0.00 35.29 1.28
2622 3938 8.926374 TCCGTTTCCTCAATATAAGGTGTATTA 58.074 33.333 4.45 0.00 35.29 0.98
2623 3939 7.798071 TCCGTTTCCTCAATATAAGGTGTATT 58.202 34.615 4.45 0.00 35.29 1.89
2624 3940 7.369551 TCCGTTTCCTCAATATAAGGTGTAT 57.630 36.000 4.45 0.00 35.29 2.29
2625 3941 6.183360 CCTCCGTTTCCTCAATATAAGGTGTA 60.183 42.308 4.45 0.00 35.29 2.90
2626 3942 5.396436 CCTCCGTTTCCTCAATATAAGGTGT 60.396 44.000 4.45 0.00 35.29 4.16
2627 3943 5.057149 CCTCCGTTTCCTCAATATAAGGTG 58.943 45.833 4.45 0.00 35.29 4.00
2628 3944 4.102681 CCCTCCGTTTCCTCAATATAAGGT 59.897 45.833 4.45 0.00 35.29 3.50
2629 3945 4.347000 TCCCTCCGTTTCCTCAATATAAGG 59.653 45.833 0.00 0.00 35.05 2.69
2630 3946 5.070580 ACTCCCTCCGTTTCCTCAATATAAG 59.929 44.000 0.00 0.00 0.00 1.73
2631 3947 4.966805 ACTCCCTCCGTTTCCTCAATATAA 59.033 41.667 0.00 0.00 0.00 0.98
2632 3948 4.553678 ACTCCCTCCGTTTCCTCAATATA 58.446 43.478 0.00 0.00 0.00 0.86
2633 3949 3.385115 ACTCCCTCCGTTTCCTCAATAT 58.615 45.455 0.00 0.00 0.00 1.28
2634 3950 2.829023 ACTCCCTCCGTTTCCTCAATA 58.171 47.619 0.00 0.00 0.00 1.90
2635 3951 1.657804 ACTCCCTCCGTTTCCTCAAT 58.342 50.000 0.00 0.00 0.00 2.57
2636 3952 1.897802 GTACTCCCTCCGTTTCCTCAA 59.102 52.381 0.00 0.00 0.00 3.02
2637 3953 1.076677 AGTACTCCCTCCGTTTCCTCA 59.923 52.381 0.00 0.00 0.00 3.86
2638 3954 1.849977 AGTACTCCCTCCGTTTCCTC 58.150 55.000 0.00 0.00 0.00 3.71
2639 3955 2.311243 ACTAGTACTCCCTCCGTTTCCT 59.689 50.000 0.00 0.00 0.00 3.36
2640 3956 2.732763 ACTAGTACTCCCTCCGTTTCC 58.267 52.381 0.00 0.00 0.00 3.13
2641 3957 4.095632 GTGTACTAGTACTCCCTCCGTTTC 59.904 50.000 28.56 3.45 37.00 2.78
2642 3958 4.013050 GTGTACTAGTACTCCCTCCGTTT 58.987 47.826 28.56 0.00 37.00 3.60
2647 3963 4.198530 GTCCTGTGTACTAGTACTCCCTC 58.801 52.174 28.56 15.97 37.00 4.30
2656 3972 5.068234 TGGAAATTCGTCCTGTGTACTAG 57.932 43.478 0.00 0.00 38.62 2.57
2844 4273 4.514577 ACGAGGGAGGCGATTGCG 62.515 66.667 0.00 0.00 44.10 4.85
3261 4700 0.838122 ACTGGGCTTGGCTAGACACT 60.838 55.000 13.87 0.00 31.29 3.55
3267 4706 2.385803 GAGTACTACTGGGCTTGGCTA 58.614 52.381 0.00 0.00 0.00 3.93
3304 4746 0.902531 ATCCCTTACACCACACTCGG 59.097 55.000 0.00 0.00 0.00 4.63
3306 4748 1.003118 TGCATCCCTTACACCACACTC 59.997 52.381 0.00 0.00 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.