Multiple sequence alignment - TraesCS2B01G531700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G531700 chr2B 100.000 2471 0 0 1 2471 727240610 727238140 0.000000e+00 4564.0
1 TraesCS2B01G531700 chr2B 89.457 2210 173 18 298 2471 221370646 221372831 0.000000e+00 2736.0
2 TraesCS2B01G531700 chr2B 89.512 2193 180 22 301 2471 608481442 608479278 0.000000e+00 2730.0
3 TraesCS2B01G531700 chr2B 91.074 1815 127 15 297 2108 373317712 373315930 0.000000e+00 2422.0
4 TraesCS2B01G531700 chr2B 90.654 214 13 2 2234 2446 141698757 141698550 6.730000e-71 278.0
5 TraesCS2B01G531700 chr1B 91.197 2181 149 14 299 2471 618300453 618298308 0.000000e+00 2924.0
6 TraesCS2B01G531700 chr1B 90.399 2156 158 15 353 2471 684979151 684977008 0.000000e+00 2789.0
7 TraesCS2B01G531700 chr1B 90.568 2131 150 22 299 2412 675310634 675308538 0.000000e+00 2774.0
8 TraesCS2B01G531700 chr1B 92.437 238 17 1 2234 2470 377912807 377912570 3.040000e-89 339.0
9 TraesCS2B01G531700 chr6D 91.118 2128 138 20 328 2440 465952136 465950045 0.000000e+00 2835.0
10 TraesCS2B01G531700 chr3B 91.040 2076 140 22 411 2471 229457866 229459910 0.000000e+00 2761.0
11 TraesCS2B01G531700 chr3B 89.008 837 73 13 299 1131 537496125 537495304 0.000000e+00 1018.0
12 TraesCS2B01G531700 chr3B 88.769 837 75 13 299 1131 537506025 537505204 0.000000e+00 1007.0
13 TraesCS2B01G531700 chr6B 90.777 2071 147 20 311 2378 148852737 148850708 0.000000e+00 2726.0
14 TraesCS2B01G531700 chr7B 90.026 1955 163 23 535 2471 392647503 392645563 0.000000e+00 2501.0
15 TraesCS2B01G531700 chr7B 89.208 1983 145 36 506 2471 608197058 608198988 0.000000e+00 2412.0
16 TraesCS2B01G531700 chr7B 88.669 556 55 4 299 850 706461763 706462314 0.000000e+00 671.0
17 TraesCS2B01G531700 chr2D 92.166 1634 97 11 311 1941 648597027 648598632 0.000000e+00 2279.0
18 TraesCS2B01G531700 chr5B 91.480 1608 116 17 804 2401 653004350 653002754 0.000000e+00 2191.0
19 TraesCS2B01G531700 chr5B 88.713 567 53 4 301 864 486272905 486272347 0.000000e+00 682.0
20 TraesCS2B01G531700 chr5B 86.066 488 59 2 301 785 687882982 687882501 1.310000e-142 516.0
21 TraesCS2B01G531700 chrUn 88.889 837 74 13 299 1131 335315803 335314982 0.000000e+00 1013.0
22 TraesCS2B01G531700 chrUn 93.182 44 3 0 768 811 34756411 34756368 5.700000e-07 65.8
23 TraesCS2B01G531700 chr4B 89.329 656 60 4 303 949 37924309 37924963 0.000000e+00 815.0
24 TraesCS2B01G531700 chr1A 93.182 44 3 0 768 811 290625878 290625921 5.700000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G531700 chr2B 727238140 727240610 2470 True 4564 4564 100.000 1 2471 1 chr2B.!!$R4 2470
1 TraesCS2B01G531700 chr2B 221370646 221372831 2185 False 2736 2736 89.457 298 2471 1 chr2B.!!$F1 2173
2 TraesCS2B01G531700 chr2B 608479278 608481442 2164 True 2730 2730 89.512 301 2471 1 chr2B.!!$R3 2170
3 TraesCS2B01G531700 chr2B 373315930 373317712 1782 True 2422 2422 91.074 297 2108 1 chr2B.!!$R2 1811
4 TraesCS2B01G531700 chr1B 618298308 618300453 2145 True 2924 2924 91.197 299 2471 1 chr1B.!!$R2 2172
5 TraesCS2B01G531700 chr1B 684977008 684979151 2143 True 2789 2789 90.399 353 2471 1 chr1B.!!$R4 2118
6 TraesCS2B01G531700 chr1B 675308538 675310634 2096 True 2774 2774 90.568 299 2412 1 chr1B.!!$R3 2113
7 TraesCS2B01G531700 chr6D 465950045 465952136 2091 True 2835 2835 91.118 328 2440 1 chr6D.!!$R1 2112
8 TraesCS2B01G531700 chr3B 229457866 229459910 2044 False 2761 2761 91.040 411 2471 1 chr3B.!!$F1 2060
9 TraesCS2B01G531700 chr3B 537495304 537496125 821 True 1018 1018 89.008 299 1131 1 chr3B.!!$R1 832
10 TraesCS2B01G531700 chr3B 537505204 537506025 821 True 1007 1007 88.769 299 1131 1 chr3B.!!$R2 832
11 TraesCS2B01G531700 chr6B 148850708 148852737 2029 True 2726 2726 90.777 311 2378 1 chr6B.!!$R1 2067
12 TraesCS2B01G531700 chr7B 392645563 392647503 1940 True 2501 2501 90.026 535 2471 1 chr7B.!!$R1 1936
13 TraesCS2B01G531700 chr7B 608197058 608198988 1930 False 2412 2412 89.208 506 2471 1 chr7B.!!$F1 1965
14 TraesCS2B01G531700 chr7B 706461763 706462314 551 False 671 671 88.669 299 850 1 chr7B.!!$F2 551
15 TraesCS2B01G531700 chr2D 648597027 648598632 1605 False 2279 2279 92.166 311 1941 1 chr2D.!!$F1 1630
16 TraesCS2B01G531700 chr5B 653002754 653004350 1596 True 2191 2191 91.480 804 2401 1 chr5B.!!$R2 1597
17 TraesCS2B01G531700 chr5B 486272347 486272905 558 True 682 682 88.713 301 864 1 chr5B.!!$R1 563
18 TraesCS2B01G531700 chrUn 335314982 335315803 821 True 1013 1013 88.889 299 1131 1 chrUn.!!$R2 832
19 TraesCS2B01G531700 chr4B 37924309 37924963 654 False 815 815 89.329 303 949 1 chr4B.!!$F1 646

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
260 261 0.031585 TTCAGGTGGTGAGAACGACG 59.968 55.0 0.0 0.0 36.21 5.12 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1877 1953 0.035598 TCCTTTTTCGTGCCATCCGA 59.964 50.0 0.0 0.0 0.0 4.55 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 3.181526 GGAGATGTTGCCTCCTTGG 57.818 57.895 0.00 0.00 45.18 3.61
20 21 0.620556 GGAGATGTTGCCTCCTTGGA 59.379 55.000 0.00 0.00 45.18 3.53
21 22 1.680249 GGAGATGTTGCCTCCTTGGAC 60.680 57.143 0.00 0.00 45.18 4.02
22 23 1.280421 GAGATGTTGCCTCCTTGGACT 59.720 52.381 0.00 0.00 38.35 3.85
23 24 1.707427 AGATGTTGCCTCCTTGGACTT 59.293 47.619 0.00 0.00 38.35 3.01
24 25 1.815003 GATGTTGCCTCCTTGGACTTG 59.185 52.381 0.00 0.00 38.35 3.16
25 26 0.178992 TGTTGCCTCCTTGGACTTGG 60.179 55.000 0.00 0.00 38.35 3.61
26 27 0.110486 GTTGCCTCCTTGGACTTGGA 59.890 55.000 0.00 0.00 38.35 3.53
27 28 0.401738 TTGCCTCCTTGGACTTGGAG 59.598 55.000 0.00 0.00 46.91 3.86
28 29 1.377856 GCCTCCTTGGACTTGGAGC 60.378 63.158 3.68 0.00 46.23 4.70
29 30 1.078848 CCTCCTTGGACTTGGAGCG 60.079 63.158 3.68 0.00 46.23 5.03
30 31 1.674057 CTCCTTGGACTTGGAGCGT 59.326 57.895 0.00 0.00 42.62 5.07
31 32 0.390472 CTCCTTGGACTTGGAGCGTC 60.390 60.000 0.00 0.00 42.62 5.19
36 37 2.842320 GGACTTGGAGCGTCCTTTC 58.158 57.895 2.11 0.76 45.87 2.62
37 38 1.014564 GGACTTGGAGCGTCCTTTCG 61.015 60.000 2.11 0.00 45.87 3.46
38 39 0.038526 GACTTGGAGCGTCCTTTCGA 60.039 55.000 5.77 0.00 37.46 3.71
39 40 0.038159 ACTTGGAGCGTCCTTTCGAG 60.038 55.000 5.77 0.00 37.46 4.04
40 41 0.038159 CTTGGAGCGTCCTTTCGAGT 60.038 55.000 5.77 0.00 37.46 4.18
41 42 0.319555 TTGGAGCGTCCTTTCGAGTG 60.320 55.000 5.77 0.00 37.46 3.51
42 43 1.289380 GGAGCGTCCTTTCGAGTGT 59.711 57.895 0.00 0.00 32.53 3.55
43 44 0.733223 GGAGCGTCCTTTCGAGTGTC 60.733 60.000 0.00 0.00 32.53 3.67
44 45 0.733223 GAGCGTCCTTTCGAGTGTCC 60.733 60.000 0.00 0.00 0.00 4.02
45 46 2.087009 GCGTCCTTTCGAGTGTCCG 61.087 63.158 0.00 0.00 0.00 4.79
46 47 1.443872 CGTCCTTTCGAGTGTCCGG 60.444 63.158 0.00 0.00 0.00 5.14
47 48 1.080025 GTCCTTTCGAGTGTCCGGG 60.080 63.158 0.00 0.00 0.00 5.73
48 49 2.264794 CCTTTCGAGTGTCCGGGG 59.735 66.667 0.00 0.00 0.00 5.73
49 50 2.280552 CCTTTCGAGTGTCCGGGGA 61.281 63.158 0.00 0.00 0.00 4.81
50 51 1.614241 CCTTTCGAGTGTCCGGGGAT 61.614 60.000 0.00 0.00 0.00 3.85
51 52 0.460284 CTTTCGAGTGTCCGGGGATG 60.460 60.000 0.00 0.00 0.00 3.51
52 53 0.901114 TTTCGAGTGTCCGGGGATGA 60.901 55.000 0.00 0.00 0.00 2.92
53 54 0.901114 TTCGAGTGTCCGGGGATGAA 60.901 55.000 0.00 0.00 0.00 2.57
54 55 0.686441 TCGAGTGTCCGGGGATGAAT 60.686 55.000 0.00 0.00 0.00 2.57
55 56 0.530650 CGAGTGTCCGGGGATGAATG 60.531 60.000 0.00 0.00 0.00 2.67
56 57 0.541863 GAGTGTCCGGGGATGAATGT 59.458 55.000 0.00 0.00 0.00 2.71
57 58 0.253044 AGTGTCCGGGGATGAATGTG 59.747 55.000 0.00 0.00 0.00 3.21
58 59 0.035439 GTGTCCGGGGATGAATGTGT 60.035 55.000 0.00 0.00 0.00 3.72
59 60 0.695924 TGTCCGGGGATGAATGTGTT 59.304 50.000 0.00 0.00 0.00 3.32
60 61 1.094785 GTCCGGGGATGAATGTGTTG 58.905 55.000 0.00 0.00 0.00 3.33
61 62 0.679640 TCCGGGGATGAATGTGTTGC 60.680 55.000 0.00 0.00 0.00 4.17
62 63 0.680921 CCGGGGATGAATGTGTTGCT 60.681 55.000 0.00 0.00 0.00 3.91
63 64 1.176527 CGGGGATGAATGTGTTGCTT 58.823 50.000 0.00 0.00 0.00 3.91
64 65 1.133025 CGGGGATGAATGTGTTGCTTC 59.867 52.381 0.00 0.00 0.00 3.86
65 66 1.478105 GGGGATGAATGTGTTGCTTCC 59.522 52.381 0.00 0.00 0.00 3.46
66 67 2.450476 GGGATGAATGTGTTGCTTCCT 58.550 47.619 0.00 0.00 0.00 3.36
67 68 2.827921 GGGATGAATGTGTTGCTTCCTT 59.172 45.455 0.00 0.00 0.00 3.36
68 69 3.259123 GGGATGAATGTGTTGCTTCCTTT 59.741 43.478 0.00 0.00 0.00 3.11
69 70 4.240096 GGATGAATGTGTTGCTTCCTTTG 58.760 43.478 0.00 0.00 0.00 2.77
70 71 3.096489 TGAATGTGTTGCTTCCTTTGC 57.904 42.857 0.00 0.00 0.00 3.68
71 72 2.224018 TGAATGTGTTGCTTCCTTTGCC 60.224 45.455 0.00 0.00 0.00 4.52
72 73 1.708341 ATGTGTTGCTTCCTTTGCCT 58.292 45.000 0.00 0.00 0.00 4.75
73 74 0.746063 TGTGTTGCTTCCTTTGCCTG 59.254 50.000 0.00 0.00 0.00 4.85
74 75 0.598419 GTGTTGCTTCCTTTGCCTGC 60.598 55.000 0.00 0.00 0.00 4.85
75 76 1.042003 TGTTGCTTCCTTTGCCTGCA 61.042 50.000 0.00 0.00 0.00 4.41
76 77 0.319297 GTTGCTTCCTTTGCCTGCAG 60.319 55.000 6.78 6.78 35.02 4.41
77 78 2.091102 TTGCTTCCTTTGCCTGCAGC 62.091 55.000 8.66 4.57 44.14 5.25
78 79 2.273912 GCTTCCTTTGCCTGCAGCT 61.274 57.895 8.66 0.00 44.23 4.24
79 80 1.585006 CTTCCTTTGCCTGCAGCTG 59.415 57.895 10.11 10.11 44.23 4.24
80 81 1.152694 TTCCTTTGCCTGCAGCTGT 60.153 52.632 16.64 0.00 44.23 4.40
81 82 0.110295 TTCCTTTGCCTGCAGCTGTA 59.890 50.000 16.64 10.46 44.23 2.74
82 83 0.329261 TCCTTTGCCTGCAGCTGTAT 59.671 50.000 16.64 0.00 44.23 2.29
83 84 0.454600 CCTTTGCCTGCAGCTGTATG 59.545 55.000 16.64 9.29 44.23 2.39
84 85 0.179145 CTTTGCCTGCAGCTGTATGC 60.179 55.000 21.85 21.85 46.68 3.14
95 96 1.277326 GCTGTATGCGTCATTCGACA 58.723 50.000 0.00 0.00 42.74 4.35
96 97 1.860950 GCTGTATGCGTCATTCGACAT 59.139 47.619 0.00 0.00 42.74 3.06
97 98 2.285220 GCTGTATGCGTCATTCGACATT 59.715 45.455 0.00 0.00 42.74 2.71
98 99 3.242413 GCTGTATGCGTCATTCGACATTT 60.242 43.478 0.00 0.00 42.74 2.32
99 100 4.508971 CTGTATGCGTCATTCGACATTTC 58.491 43.478 0.00 0.00 42.74 2.17
100 101 4.180817 TGTATGCGTCATTCGACATTTCT 58.819 39.130 0.00 0.00 42.74 2.52
101 102 3.663464 ATGCGTCATTCGACATTTCTG 57.337 42.857 0.00 0.00 42.74 3.02
102 103 2.682836 TGCGTCATTCGACATTTCTGA 58.317 42.857 0.00 0.00 42.74 3.27
103 104 3.261580 TGCGTCATTCGACATTTCTGAT 58.738 40.909 0.00 0.00 42.74 2.90
104 105 4.429108 TGCGTCATTCGACATTTCTGATA 58.571 39.130 0.00 0.00 42.74 2.15
105 106 5.049828 TGCGTCATTCGACATTTCTGATAT 58.950 37.500 0.00 0.00 42.74 1.63
106 107 5.175673 TGCGTCATTCGACATTTCTGATATC 59.824 40.000 0.00 0.00 42.74 1.63
107 108 5.403766 GCGTCATTCGACATTTCTGATATCT 59.596 40.000 3.98 0.00 42.74 1.98
108 109 6.399459 GCGTCATTCGACATTTCTGATATCTC 60.399 42.308 3.98 0.00 42.74 2.75
109 110 6.183359 CGTCATTCGACATTTCTGATATCTCG 60.183 42.308 3.98 3.27 42.74 4.04
110 111 6.858478 GTCATTCGACATTTCTGATATCTCGA 59.142 38.462 3.98 5.65 42.13 4.04
111 112 7.540400 GTCATTCGACATTTCTGATATCTCGAT 59.460 37.037 10.57 1.70 42.13 3.59
112 113 8.084684 TCATTCGACATTTCTGATATCTCGATT 58.915 33.333 10.57 6.04 28.84 3.34
113 114 7.629027 TTCGACATTTCTGATATCTCGATTG 57.371 36.000 10.57 7.63 28.84 2.67
114 115 6.739112 TCGACATTTCTGATATCTCGATTGT 58.261 36.000 3.98 7.55 0.00 2.71
115 116 6.858478 TCGACATTTCTGATATCTCGATTGTC 59.142 38.462 3.98 13.43 0.00 3.18
116 117 6.638468 CGACATTTCTGATATCTCGATTGTCA 59.362 38.462 21.72 0.00 32.22 3.58
117 118 7.168135 CGACATTTCTGATATCTCGATTGTCAA 59.832 37.037 21.72 0.00 32.22 3.18
118 119 8.136057 ACATTTCTGATATCTCGATTGTCAAC 57.864 34.615 3.98 0.00 0.00 3.18
119 120 7.984050 ACATTTCTGATATCTCGATTGTCAACT 59.016 33.333 3.98 0.00 0.00 3.16
120 121 8.824781 CATTTCTGATATCTCGATTGTCAACTT 58.175 33.333 3.98 0.00 0.00 2.66
121 122 8.777865 TTTCTGATATCTCGATTGTCAACTTT 57.222 30.769 3.98 0.00 0.00 2.66
122 123 7.761651 TCTGATATCTCGATTGTCAACTTTG 57.238 36.000 3.98 0.00 0.00 2.77
123 124 7.323420 TCTGATATCTCGATTGTCAACTTTGT 58.677 34.615 3.98 0.00 0.00 2.83
124 125 7.276438 TCTGATATCTCGATTGTCAACTTTGTG 59.724 37.037 3.98 0.00 0.00 3.33
125 126 6.313658 TGATATCTCGATTGTCAACTTTGTGG 59.686 38.462 3.98 0.00 0.00 4.17
126 127 4.066646 TCTCGATTGTCAACTTTGTGGA 57.933 40.909 0.00 0.00 0.00 4.02
127 128 4.641396 TCTCGATTGTCAACTTTGTGGAT 58.359 39.130 0.00 0.00 0.00 3.41
128 129 4.452114 TCTCGATTGTCAACTTTGTGGATG 59.548 41.667 0.00 0.00 0.00 3.51
129 130 4.384940 TCGATTGTCAACTTTGTGGATGA 58.615 39.130 0.00 0.00 0.00 2.92
130 131 5.003160 TCGATTGTCAACTTTGTGGATGAT 58.997 37.500 0.00 0.00 0.00 2.45
131 132 5.122239 TCGATTGTCAACTTTGTGGATGATC 59.878 40.000 0.00 0.00 0.00 2.92
132 133 5.122869 CGATTGTCAACTTTGTGGATGATCT 59.877 40.000 0.00 0.00 0.00 2.75
133 134 5.694231 TTGTCAACTTTGTGGATGATCTG 57.306 39.130 0.00 0.00 0.00 2.90
134 135 4.971939 TGTCAACTTTGTGGATGATCTGA 58.028 39.130 0.00 0.00 0.00 3.27
135 136 4.756642 TGTCAACTTTGTGGATGATCTGAC 59.243 41.667 0.00 0.00 33.05 3.51
136 137 3.996363 TCAACTTTGTGGATGATCTGACG 59.004 43.478 0.00 0.00 0.00 4.35
137 138 2.350522 ACTTTGTGGATGATCTGACGC 58.649 47.619 0.00 0.00 0.00 5.19
138 139 1.325640 CTTTGTGGATGATCTGACGCG 59.674 52.381 3.53 3.53 0.00 6.01
139 140 0.246360 TTGTGGATGATCTGACGCGT 59.754 50.000 13.85 13.85 0.00 6.01
140 141 1.099689 TGTGGATGATCTGACGCGTA 58.900 50.000 13.97 0.00 0.00 4.42
141 142 1.202256 TGTGGATGATCTGACGCGTAC 60.202 52.381 13.97 6.75 0.00 3.67
153 154 3.901225 CGCGTACGTCTTGAAAGTG 57.099 52.632 17.90 0.00 33.53 3.16
154 155 1.126079 CGCGTACGTCTTGAAAGTGT 58.874 50.000 17.90 0.00 33.53 3.55
155 156 1.136992 CGCGTACGTCTTGAAAGTGTG 60.137 52.381 17.90 0.00 33.53 3.82
156 157 1.396815 GCGTACGTCTTGAAAGTGTGC 60.397 52.381 17.90 0.00 0.00 4.57
157 158 1.855978 CGTACGTCTTGAAAGTGTGCA 59.144 47.619 7.22 0.00 0.00 4.57
158 159 2.097396 CGTACGTCTTGAAAGTGTGCAG 60.097 50.000 7.22 0.00 0.00 4.41
159 160 0.657840 ACGTCTTGAAAGTGTGCAGC 59.342 50.000 0.00 0.00 0.00 5.25
160 161 0.040958 CGTCTTGAAAGTGTGCAGCC 60.041 55.000 0.00 0.00 0.00 4.85
161 162 1.024271 GTCTTGAAAGTGTGCAGCCA 58.976 50.000 0.00 0.00 0.00 4.75
162 163 1.405105 GTCTTGAAAGTGTGCAGCCAA 59.595 47.619 0.00 0.00 0.00 4.52
163 164 2.035066 GTCTTGAAAGTGTGCAGCCAAT 59.965 45.455 0.00 0.00 0.00 3.16
164 165 3.253188 GTCTTGAAAGTGTGCAGCCAATA 59.747 43.478 0.00 0.00 0.00 1.90
165 166 3.503363 TCTTGAAAGTGTGCAGCCAATAG 59.497 43.478 0.00 0.00 0.00 1.73
166 167 1.541147 TGAAAGTGTGCAGCCAATAGC 59.459 47.619 0.00 0.00 44.25 2.97
175 176 4.344237 GCCAATAGCAAGGCCACT 57.656 55.556 5.01 1.03 45.18 4.00
176 177 1.811860 GCCAATAGCAAGGCCACTG 59.188 57.895 5.01 2.32 45.18 3.66
177 178 1.669999 GCCAATAGCAAGGCCACTGG 61.670 60.000 5.01 0.00 45.18 4.00
178 179 1.039233 CCAATAGCAAGGCCACTGGG 61.039 60.000 5.01 0.00 37.18 4.45
179 180 1.039233 CAATAGCAAGGCCACTGGGG 61.039 60.000 5.01 0.00 40.85 4.96
180 181 2.228841 AATAGCAAGGCCACTGGGGG 62.229 60.000 5.01 0.00 37.04 5.40
181 182 3.881926 TAGCAAGGCCACTGGGGGA 62.882 63.158 5.01 0.00 37.04 4.81
182 183 4.066139 GCAAGGCCACTGGGGGAT 62.066 66.667 5.01 0.00 37.04 3.85
183 184 2.689691 GCAAGGCCACTGGGGGATA 61.690 63.158 5.01 0.00 37.04 2.59
184 185 2.006748 CAAGGCCACTGGGGGATAA 58.993 57.895 5.01 0.00 37.04 1.75
185 186 0.334676 CAAGGCCACTGGGGGATAAA 59.665 55.000 5.01 0.00 37.04 1.40
186 187 1.089123 AAGGCCACTGGGGGATAAAA 58.911 50.000 5.01 0.00 37.04 1.52
187 188 0.335019 AGGCCACTGGGGGATAAAAC 59.665 55.000 5.01 0.00 37.04 2.43
188 189 0.040499 GGCCACTGGGGGATAAAACA 59.960 55.000 0.00 0.00 37.04 2.83
189 190 1.551329 GGCCACTGGGGGATAAAACAA 60.551 52.381 0.00 0.00 37.04 2.83
190 191 2.466846 GCCACTGGGGGATAAAACAAT 58.533 47.619 0.00 0.00 37.04 2.71
191 192 2.430694 GCCACTGGGGGATAAAACAATC 59.569 50.000 0.00 0.00 37.04 2.67
192 193 2.687935 CCACTGGGGGATAAAACAATCG 59.312 50.000 0.00 0.00 0.00 3.34
193 194 3.352648 CACTGGGGGATAAAACAATCGT 58.647 45.455 0.00 0.00 0.00 3.73
194 195 3.377172 CACTGGGGGATAAAACAATCGTC 59.623 47.826 0.00 0.00 0.00 4.20
195 196 3.265995 ACTGGGGGATAAAACAATCGTCT 59.734 43.478 0.00 0.00 0.00 4.18
196 197 3.616219 TGGGGGATAAAACAATCGTCTG 58.384 45.455 0.00 0.00 0.00 3.51
197 198 3.009695 TGGGGGATAAAACAATCGTCTGT 59.990 43.478 0.00 0.00 0.00 3.41
198 199 3.377172 GGGGGATAAAACAATCGTCTGTG 59.623 47.826 0.00 0.00 0.00 3.66
199 200 3.181500 GGGGATAAAACAATCGTCTGTGC 60.181 47.826 0.00 0.00 0.00 4.57
200 201 3.181500 GGGATAAAACAATCGTCTGTGCC 60.181 47.826 0.00 0.00 0.00 5.01
201 202 3.181500 GGATAAAACAATCGTCTGTGCCC 60.181 47.826 0.00 0.00 0.00 5.36
202 203 1.686355 AAAACAATCGTCTGTGCCCA 58.314 45.000 0.00 0.00 0.00 5.36
203 204 1.686355 AAACAATCGTCTGTGCCCAA 58.314 45.000 0.00 0.00 0.00 4.12
204 205 1.909700 AACAATCGTCTGTGCCCAAT 58.090 45.000 0.00 0.00 0.00 3.16
205 206 1.453155 ACAATCGTCTGTGCCCAATC 58.547 50.000 0.00 0.00 0.00 2.67
206 207 0.734889 CAATCGTCTGTGCCCAATCC 59.265 55.000 0.00 0.00 0.00 3.01
207 208 0.744414 AATCGTCTGTGCCCAATCCG 60.744 55.000 0.00 0.00 0.00 4.18
208 209 1.899437 ATCGTCTGTGCCCAATCCGT 61.899 55.000 0.00 0.00 0.00 4.69
209 210 1.671054 CGTCTGTGCCCAATCCGTT 60.671 57.895 0.00 0.00 0.00 4.44
210 211 1.635663 CGTCTGTGCCCAATCCGTTC 61.636 60.000 0.00 0.00 0.00 3.95
211 212 0.321653 GTCTGTGCCCAATCCGTTCT 60.322 55.000 0.00 0.00 0.00 3.01
212 213 1.066430 GTCTGTGCCCAATCCGTTCTA 60.066 52.381 0.00 0.00 0.00 2.10
213 214 1.066430 TCTGTGCCCAATCCGTTCTAC 60.066 52.381 0.00 0.00 0.00 2.59
214 215 0.687920 TGTGCCCAATCCGTTCTACA 59.312 50.000 0.00 0.00 0.00 2.74
215 216 1.280710 TGTGCCCAATCCGTTCTACAT 59.719 47.619 0.00 0.00 0.00 2.29
216 217 1.670811 GTGCCCAATCCGTTCTACATG 59.329 52.381 0.00 0.00 0.00 3.21
217 218 1.308998 GCCCAATCCGTTCTACATGG 58.691 55.000 0.00 0.00 0.00 3.66
218 219 1.408266 GCCCAATCCGTTCTACATGGT 60.408 52.381 0.00 0.00 32.49 3.55
219 220 2.944094 GCCCAATCCGTTCTACATGGTT 60.944 50.000 0.00 0.00 32.49 3.67
220 221 3.352648 CCCAATCCGTTCTACATGGTTT 58.647 45.455 0.00 0.00 32.49 3.27
221 222 3.128589 CCCAATCCGTTCTACATGGTTTG 59.871 47.826 0.00 0.00 39.58 2.93
222 223 4.355543 CAATCCGTTCTACATGGTTTGG 57.644 45.455 0.00 0.00 37.51 3.28
223 224 3.713826 ATCCGTTCTACATGGTTTGGT 57.286 42.857 0.00 0.00 32.49 3.67
224 225 3.048337 TCCGTTCTACATGGTTTGGTC 57.952 47.619 0.00 0.00 32.49 4.02
225 226 2.369203 TCCGTTCTACATGGTTTGGTCA 59.631 45.455 0.00 0.00 32.49 4.02
226 227 3.142951 CCGTTCTACATGGTTTGGTCAA 58.857 45.455 0.00 0.00 0.00 3.18
227 228 3.566322 CCGTTCTACATGGTTTGGTCAAA 59.434 43.478 0.00 0.00 0.00 2.69
228 229 4.320202 CCGTTCTACATGGTTTGGTCAAAG 60.320 45.833 0.00 0.00 0.00 2.77
229 230 4.513692 CGTTCTACATGGTTTGGTCAAAGA 59.486 41.667 0.00 0.00 0.00 2.52
230 231 5.008217 CGTTCTACATGGTTTGGTCAAAGAA 59.992 40.000 0.00 0.00 0.00 2.52
231 232 6.293955 CGTTCTACATGGTTTGGTCAAAGAAT 60.294 38.462 0.00 0.00 0.00 2.40
232 233 7.433680 GTTCTACATGGTTTGGTCAAAGAATT 58.566 34.615 0.00 0.00 0.00 2.17
233 234 7.214467 TCTACATGGTTTGGTCAAAGAATTC 57.786 36.000 0.00 0.00 0.00 2.17
234 235 4.870363 ACATGGTTTGGTCAAAGAATTCG 58.130 39.130 0.00 0.00 0.00 3.34
235 236 4.236935 CATGGTTTGGTCAAAGAATTCGG 58.763 43.478 0.00 0.00 0.00 4.30
236 237 3.556999 TGGTTTGGTCAAAGAATTCGGA 58.443 40.909 0.00 0.00 0.00 4.55
237 238 4.148838 TGGTTTGGTCAAAGAATTCGGAT 58.851 39.130 0.00 0.00 0.00 4.18
238 239 4.217550 TGGTTTGGTCAAAGAATTCGGATC 59.782 41.667 0.00 0.79 0.00 3.36
239 240 4.217550 GGTTTGGTCAAAGAATTCGGATCA 59.782 41.667 0.00 3.45 0.00 2.92
240 241 5.278758 GGTTTGGTCAAAGAATTCGGATCAA 60.279 40.000 15.13 15.13 32.73 2.57
241 242 6.389906 GTTTGGTCAAAGAATTCGGATCAAT 58.610 36.000 17.99 0.00 34.04 2.57
242 243 6.588719 TTGGTCAAAGAATTCGGATCAATT 57.411 33.333 15.13 0.00 30.58 2.32
243 244 6.194796 TGGTCAAAGAATTCGGATCAATTC 57.805 37.500 9.46 9.46 41.37 2.17
244 245 5.709631 TGGTCAAAGAATTCGGATCAATTCA 59.290 36.000 16.58 0.00 42.86 2.57
245 246 6.127925 TGGTCAAAGAATTCGGATCAATTCAG 60.128 38.462 16.58 8.97 42.86 3.02
246 247 6.261118 GTCAAAGAATTCGGATCAATTCAGG 58.739 40.000 16.58 8.48 42.86 3.86
247 248 5.945784 TCAAAGAATTCGGATCAATTCAGGT 59.054 36.000 16.58 3.72 42.86 4.00
248 249 5.824904 AAGAATTCGGATCAATTCAGGTG 57.175 39.130 16.58 0.00 42.86 4.00
249 250 4.202441 AGAATTCGGATCAATTCAGGTGG 58.798 43.478 16.58 0.00 42.86 4.61
250 251 3.652057 ATTCGGATCAATTCAGGTGGT 57.348 42.857 0.00 0.00 0.00 4.16
251 252 2.401583 TCGGATCAATTCAGGTGGTG 57.598 50.000 0.00 0.00 0.00 4.17
252 253 1.905894 TCGGATCAATTCAGGTGGTGA 59.094 47.619 0.00 0.00 0.00 4.02
253 254 2.093500 TCGGATCAATTCAGGTGGTGAG 60.093 50.000 0.00 0.00 36.21 3.51
254 255 2.093500 CGGATCAATTCAGGTGGTGAGA 60.093 50.000 0.00 0.00 36.21 3.27
255 256 3.619733 CGGATCAATTCAGGTGGTGAGAA 60.620 47.826 0.00 0.00 36.21 2.87
256 257 3.691609 GGATCAATTCAGGTGGTGAGAAC 59.308 47.826 0.00 0.00 36.21 3.01
257 258 2.766313 TCAATTCAGGTGGTGAGAACG 58.234 47.619 0.00 0.00 36.21 3.95
258 259 2.367241 TCAATTCAGGTGGTGAGAACGA 59.633 45.455 0.00 0.00 36.21 3.85
259 260 2.457366 ATTCAGGTGGTGAGAACGAC 57.543 50.000 0.00 0.00 36.21 4.34
260 261 0.031585 TTCAGGTGGTGAGAACGACG 59.968 55.000 0.00 0.00 36.21 5.12
261 262 0.820482 TCAGGTGGTGAGAACGACGA 60.820 55.000 0.00 0.00 0.00 4.20
262 263 0.243907 CAGGTGGTGAGAACGACGAT 59.756 55.000 0.00 0.00 0.00 3.73
263 264 0.966920 AGGTGGTGAGAACGACGATT 59.033 50.000 0.00 0.00 0.00 3.34
264 265 1.068474 GGTGGTGAGAACGACGATTG 58.932 55.000 0.00 0.00 0.00 2.67
265 266 0.438830 GTGGTGAGAACGACGATTGC 59.561 55.000 0.00 0.00 0.00 3.56
266 267 0.317160 TGGTGAGAACGACGATTGCT 59.683 50.000 0.00 0.00 0.00 3.91
267 268 1.542472 TGGTGAGAACGACGATTGCTA 59.458 47.619 0.00 0.00 0.00 3.49
268 269 2.029739 TGGTGAGAACGACGATTGCTAA 60.030 45.455 0.00 0.00 0.00 3.09
269 270 2.344741 GGTGAGAACGACGATTGCTAAC 59.655 50.000 0.00 0.00 0.00 2.34
270 271 2.344741 GTGAGAACGACGATTGCTAACC 59.655 50.000 0.00 0.00 0.00 2.85
271 272 2.029739 TGAGAACGACGATTGCTAACCA 60.030 45.455 0.00 0.00 0.00 3.67
272 273 2.599082 GAGAACGACGATTGCTAACCAG 59.401 50.000 0.00 0.00 0.00 4.00
273 274 2.029290 AGAACGACGATTGCTAACCAGT 60.029 45.455 0.00 0.00 0.00 4.00
274 275 2.450609 ACGACGATTGCTAACCAGTT 57.549 45.000 0.00 0.00 0.00 3.16
275 276 2.066262 ACGACGATTGCTAACCAGTTG 58.934 47.619 0.00 0.00 0.00 3.16
276 277 2.288579 ACGACGATTGCTAACCAGTTGA 60.289 45.455 0.00 0.00 0.00 3.18
277 278 2.092211 CGACGATTGCTAACCAGTTGAC 59.908 50.000 0.00 0.00 0.00 3.18
278 279 3.326747 GACGATTGCTAACCAGTTGACT 58.673 45.455 0.00 0.00 0.00 3.41
279 280 4.491676 GACGATTGCTAACCAGTTGACTA 58.508 43.478 0.00 0.00 0.00 2.59
280 281 4.243270 ACGATTGCTAACCAGTTGACTAC 58.757 43.478 0.00 0.00 0.00 2.73
281 282 3.303495 CGATTGCTAACCAGTTGACTACG 59.697 47.826 0.00 0.00 0.00 3.51
282 283 3.738830 TTGCTAACCAGTTGACTACGT 57.261 42.857 0.00 0.00 0.00 3.57
283 284 3.738830 TGCTAACCAGTTGACTACGTT 57.261 42.857 0.00 2.57 0.00 3.99
284 285 4.062677 TGCTAACCAGTTGACTACGTTT 57.937 40.909 0.00 0.00 0.00 3.60
285 286 4.444536 TGCTAACCAGTTGACTACGTTTT 58.555 39.130 0.00 0.00 0.00 2.43
286 287 4.877251 TGCTAACCAGTTGACTACGTTTTT 59.123 37.500 0.00 0.00 0.00 1.94
387 395 2.080286 GCTAGTTTGTCTTCAGCGGA 57.920 50.000 0.00 0.00 0.00 5.54
392 400 0.179094 TTTGTCTTCAGCGGACGTGT 60.179 50.000 0.00 0.00 36.58 4.49
395 403 1.067364 TGTCTTCAGCGGACGTGTAAA 59.933 47.619 0.00 0.00 36.58 2.01
398 406 3.185797 GTCTTCAGCGGACGTGTAAAAAT 59.814 43.478 0.00 0.00 0.00 1.82
724 780 4.115199 GCCCCCTCTTCATGCCGT 62.115 66.667 0.00 0.00 0.00 5.68
807 873 4.131088 GACGACTCCGGCACCTCC 62.131 72.222 0.00 0.00 44.91 4.30
921 989 1.671054 GAAGCTTGCAGGGCGTGTA 60.671 57.895 2.10 0.73 34.52 2.90
1209 1279 1.067846 CATGAGTTCGAGGTGGACGAA 60.068 52.381 0.00 0.00 45.25 3.85
1214 1284 2.823924 TTCGAGGTGGACGAAAATGA 57.176 45.000 0.00 0.00 44.66 2.57
1226 1296 2.159198 ACGAAAATGATGAGGGCATTGC 60.159 45.455 0.00 0.00 36.20 3.56
1244 1314 1.305201 GCCGACACACTGAAAGGAAA 58.695 50.000 0.00 0.00 39.30 3.13
1258 1328 2.215942 AGGAAAAGCGGGCAATTACT 57.784 45.000 0.00 0.00 0.00 2.24
1367 1437 0.984230 TGGCTCCGGATGAAAGAACT 59.016 50.000 3.57 0.00 0.00 3.01
1384 1454 6.777526 AAGAACTCTTTGATCTTCTCAACG 57.222 37.500 0.00 0.00 43.54 4.10
1404 1474 0.250252 TGAGTGCAATTGACCGCTCA 60.250 50.000 19.28 19.28 43.87 4.26
1468 1539 2.361104 AACAATGGTCGGCCGCAT 60.361 55.556 23.51 16.84 37.67 4.73
1473 1544 1.066908 CAATGGTCGGCCGCATAAAAT 59.933 47.619 23.51 4.97 37.67 1.82
1567 1642 4.097589 TGTTCACATCATGCTTGTTGTTGA 59.902 37.500 12.28 10.75 34.33 3.18
1583 1658 6.625362 TGTTGTTGATGTTTCTTGTGCTAAA 58.375 32.000 0.00 0.00 0.00 1.85
1600 1675 8.988064 TGTGCTAAACTTGTTTTGTTTTCATA 57.012 26.923 4.00 0.00 38.41 2.15
1632 1707 5.931146 ACATTGCACAAAACTTGTTCAAAGA 59.069 32.000 11.94 0.00 46.62 2.52
1729 1804 7.632028 GCATTGAAGGATGATGAGAAATGGAAA 60.632 37.037 0.00 0.00 0.00 3.13
1875 1951 4.023536 GGTTTCATACTCGAAGCCAAAACA 60.024 41.667 11.88 0.00 43.60 2.83
1877 1953 5.957842 TTCATACTCGAAGCCAAAACAAT 57.042 34.783 0.00 0.00 0.00 2.71
1891 1967 1.529226 AACAATCGGATGGCACGAAA 58.471 45.000 4.25 0.00 44.20 3.46
1894 1970 2.095263 ACAATCGGATGGCACGAAAAAG 60.095 45.455 4.25 0.00 44.20 2.27
1924 2003 6.530120 AGAAAAGAAGAAGAGGAAAGGAGAC 58.470 40.000 0.00 0.00 0.00 3.36
1994 2074 1.821136 CCAAGGAGGTGAGGAAAATGC 59.179 52.381 0.00 0.00 0.00 3.56
2096 2197 2.437281 GCATTGGAGGAGAGGAAGATGA 59.563 50.000 0.00 0.00 0.00 2.92
2119 2220 2.139323 TGGAGGAGCGAGCTAAGTTA 57.861 50.000 0.00 0.00 0.00 2.24
2151 2252 3.217626 AGAAGCACTTGTTCTTCTTGGG 58.782 45.455 9.27 0.00 44.64 4.12
2340 2597 2.184323 GCTTTGGAGCTACCTTGGC 58.816 57.895 0.00 0.00 45.65 4.52
2341 2598 0.609131 GCTTTGGAGCTACCTTGGCA 60.609 55.000 0.00 0.00 45.65 4.92
2342 2599 1.957113 GCTTTGGAGCTACCTTGGCAT 60.957 52.381 0.00 0.00 45.65 4.40
2348 2623 0.256752 AGCTACCTTGGCATGCATGA 59.743 50.000 30.64 7.50 0.00 3.07
2353 2628 1.272313 ACCTTGGCATGCATGAGTTCT 60.272 47.619 30.64 4.20 0.00 3.01
2448 2724 3.275271 ATGGGTGGCATGGGTGGT 61.275 61.111 0.00 0.00 0.00 4.16
2459 2735 2.825532 GCATGGGTGGTATGAGTTTTGT 59.174 45.455 0.00 0.00 0.00 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 1.280421 AGTCCAAGGAGGCAACATCTC 59.720 52.381 0.00 0.00 41.41 2.75
4 5 1.815003 CAAGTCCAAGGAGGCAACATC 59.185 52.381 0.00 0.00 41.41 3.06
5 6 1.548582 CCAAGTCCAAGGAGGCAACAT 60.549 52.381 0.00 0.00 41.41 2.71
6 7 0.178992 CCAAGTCCAAGGAGGCAACA 60.179 55.000 0.00 0.00 41.41 3.33
7 8 0.110486 TCCAAGTCCAAGGAGGCAAC 59.890 55.000 0.00 0.00 37.29 4.17
8 9 0.401738 CTCCAAGTCCAAGGAGGCAA 59.598 55.000 0.00 0.00 46.11 4.52
9 10 2.069776 CTCCAAGTCCAAGGAGGCA 58.930 57.895 0.00 0.00 46.11 4.75
13 14 1.671742 GACGCTCCAAGTCCAAGGA 59.328 57.895 0.00 0.00 32.78 3.36
14 15 4.285851 GACGCTCCAAGTCCAAGG 57.714 61.111 0.00 0.00 32.78 3.61
19 20 0.038526 TCGAAAGGACGCTCCAAGTC 60.039 55.000 6.78 0.00 39.61 3.01
20 21 0.038159 CTCGAAAGGACGCTCCAAGT 60.038 55.000 6.78 0.00 39.61 3.16
21 22 0.038159 ACTCGAAAGGACGCTCCAAG 60.038 55.000 6.78 0.00 39.61 3.61
22 23 0.319555 CACTCGAAAGGACGCTCCAA 60.320 55.000 6.78 0.00 39.61 3.53
23 24 1.289066 CACTCGAAAGGACGCTCCA 59.711 57.895 6.78 0.00 39.61 3.86
24 25 0.733223 GACACTCGAAAGGACGCTCC 60.733 60.000 0.00 0.00 36.58 4.70
25 26 0.733223 GGACACTCGAAAGGACGCTC 60.733 60.000 0.00 0.00 0.00 5.03
26 27 1.289380 GGACACTCGAAAGGACGCT 59.711 57.895 0.00 0.00 0.00 5.07
27 28 2.087009 CGGACACTCGAAAGGACGC 61.087 63.158 0.00 0.00 0.00 5.19
28 29 1.443872 CCGGACACTCGAAAGGACG 60.444 63.158 0.00 0.00 0.00 4.79
29 30 1.080025 CCCGGACACTCGAAAGGAC 60.080 63.158 0.73 0.00 0.00 3.85
30 31 2.280552 CCCCGGACACTCGAAAGGA 61.281 63.158 0.73 0.00 0.00 3.36
31 32 1.614241 ATCCCCGGACACTCGAAAGG 61.614 60.000 0.73 0.00 0.00 3.11
32 33 0.460284 CATCCCCGGACACTCGAAAG 60.460 60.000 0.73 0.00 0.00 2.62
33 34 0.901114 TCATCCCCGGACACTCGAAA 60.901 55.000 0.73 0.00 0.00 3.46
34 35 0.901114 TTCATCCCCGGACACTCGAA 60.901 55.000 0.73 0.00 0.00 3.71
35 36 0.686441 ATTCATCCCCGGACACTCGA 60.686 55.000 0.73 0.00 0.00 4.04
36 37 0.530650 CATTCATCCCCGGACACTCG 60.531 60.000 0.73 0.00 0.00 4.18
37 38 0.541863 ACATTCATCCCCGGACACTC 59.458 55.000 0.73 0.00 0.00 3.51
38 39 0.253044 CACATTCATCCCCGGACACT 59.747 55.000 0.73 0.00 0.00 3.55
39 40 0.035439 ACACATTCATCCCCGGACAC 60.035 55.000 0.73 0.00 0.00 3.67
40 41 0.695924 AACACATTCATCCCCGGACA 59.304 50.000 0.73 0.00 0.00 4.02
41 42 1.094785 CAACACATTCATCCCCGGAC 58.905 55.000 0.73 0.00 0.00 4.79
42 43 0.679640 GCAACACATTCATCCCCGGA 60.680 55.000 0.73 0.00 0.00 5.14
43 44 0.680921 AGCAACACATTCATCCCCGG 60.681 55.000 0.00 0.00 0.00 5.73
44 45 1.133025 GAAGCAACACATTCATCCCCG 59.867 52.381 0.00 0.00 0.00 5.73
45 46 1.478105 GGAAGCAACACATTCATCCCC 59.522 52.381 0.00 0.00 0.00 4.81
46 47 2.450476 AGGAAGCAACACATTCATCCC 58.550 47.619 0.00 0.00 0.00 3.85
47 48 4.240096 CAAAGGAAGCAACACATTCATCC 58.760 43.478 0.00 0.00 0.00 3.51
48 49 3.676646 GCAAAGGAAGCAACACATTCATC 59.323 43.478 0.00 0.00 0.00 2.92
49 50 3.555586 GGCAAAGGAAGCAACACATTCAT 60.556 43.478 0.00 0.00 0.00 2.57
50 51 2.224018 GGCAAAGGAAGCAACACATTCA 60.224 45.455 0.00 0.00 0.00 2.57
51 52 2.036346 AGGCAAAGGAAGCAACACATTC 59.964 45.455 0.00 0.00 0.00 2.67
52 53 2.041701 AGGCAAAGGAAGCAACACATT 58.958 42.857 0.00 0.00 0.00 2.71
53 54 1.342174 CAGGCAAAGGAAGCAACACAT 59.658 47.619 0.00 0.00 0.00 3.21
54 55 0.746063 CAGGCAAAGGAAGCAACACA 59.254 50.000 0.00 0.00 0.00 3.72
55 56 0.598419 GCAGGCAAAGGAAGCAACAC 60.598 55.000 0.00 0.00 0.00 3.32
56 57 1.042003 TGCAGGCAAAGGAAGCAACA 61.042 50.000 0.00 0.00 31.42 3.33
57 58 0.319297 CTGCAGGCAAAGGAAGCAAC 60.319 55.000 5.57 0.00 34.45 4.17
58 59 2.043625 CTGCAGGCAAAGGAAGCAA 58.956 52.632 5.57 0.00 34.45 3.91
59 60 2.567497 GCTGCAGGCAAAGGAAGCA 61.567 57.895 17.12 0.00 41.35 3.91
60 61 2.260743 GCTGCAGGCAAAGGAAGC 59.739 61.111 17.12 0.00 41.35 3.86
61 62 1.177256 ACAGCTGCAGGCAAAGGAAG 61.177 55.000 17.12 0.00 44.79 3.46
62 63 0.110295 TACAGCTGCAGGCAAAGGAA 59.890 50.000 17.12 0.00 44.79 3.36
63 64 0.329261 ATACAGCTGCAGGCAAAGGA 59.671 50.000 17.12 0.00 44.79 3.36
64 65 0.454600 CATACAGCTGCAGGCAAAGG 59.545 55.000 17.12 2.39 44.79 3.11
65 66 0.179145 GCATACAGCTGCAGGCAAAG 60.179 55.000 18.33 5.03 44.79 2.77
66 67 1.885157 GCATACAGCTGCAGGCAAA 59.115 52.632 18.33 0.00 44.79 3.68
67 68 2.400962 CGCATACAGCTGCAGGCAA 61.401 57.895 22.30 0.00 42.40 4.52
68 69 2.820922 CGCATACAGCTGCAGGCA 60.821 61.111 22.30 0.00 42.40 4.75
69 70 2.817423 GACGCATACAGCTGCAGGC 61.817 63.158 17.12 14.33 42.40 4.85
70 71 0.812811 ATGACGCATACAGCTGCAGG 60.813 55.000 17.12 3.28 42.40 4.85
71 72 1.004185 GAATGACGCATACAGCTGCAG 60.004 52.381 15.27 10.11 42.40 4.41
72 73 1.009078 GAATGACGCATACAGCTGCA 58.991 50.000 15.27 0.00 42.40 4.41
73 74 0.042708 CGAATGACGCATACAGCTGC 60.043 55.000 15.27 0.00 42.61 5.25
74 75 1.256376 GTCGAATGACGCATACAGCTG 59.744 52.381 13.48 13.48 42.61 4.24
75 76 1.560923 GTCGAATGACGCATACAGCT 58.439 50.000 0.00 0.00 42.61 4.24
85 86 6.858478 TCGAGATATCAGAAATGTCGAATGAC 59.142 38.462 5.32 0.00 43.50 3.06
86 87 6.970484 TCGAGATATCAGAAATGTCGAATGA 58.030 36.000 5.32 0.00 43.50 2.57
91 92 6.638468 TGACAATCGAGATATCAGAAATGTCG 59.362 38.462 24.65 16.83 40.40 4.35
92 93 7.936950 TGACAATCGAGATATCAGAAATGTC 57.063 36.000 24.23 24.23 36.36 3.06
93 94 7.984050 AGTTGACAATCGAGATATCAGAAATGT 59.016 33.333 5.32 12.36 0.00 2.71
94 95 8.362860 AGTTGACAATCGAGATATCAGAAATG 57.637 34.615 5.32 9.72 0.00 2.32
95 96 8.954950 AAGTTGACAATCGAGATATCAGAAAT 57.045 30.769 5.32 0.00 0.00 2.17
96 97 8.659491 CAAAGTTGACAATCGAGATATCAGAAA 58.341 33.333 5.32 0.00 0.00 2.52
97 98 7.819415 ACAAAGTTGACAATCGAGATATCAGAA 59.181 33.333 5.32 0.00 0.00 3.02
98 99 7.276438 CACAAAGTTGACAATCGAGATATCAGA 59.724 37.037 5.32 4.47 0.00 3.27
99 100 7.397194 CACAAAGTTGACAATCGAGATATCAG 58.603 38.462 5.32 0.00 0.00 2.90
100 101 6.313658 CCACAAAGTTGACAATCGAGATATCA 59.686 38.462 5.32 0.00 0.00 2.15
101 102 6.535150 TCCACAAAGTTGACAATCGAGATATC 59.465 38.462 0.00 0.00 0.00 1.63
102 103 6.406370 TCCACAAAGTTGACAATCGAGATAT 58.594 36.000 0.00 0.00 0.00 1.63
103 104 5.789521 TCCACAAAGTTGACAATCGAGATA 58.210 37.500 0.00 0.00 0.00 1.98
104 105 4.641396 TCCACAAAGTTGACAATCGAGAT 58.359 39.130 0.00 0.00 0.00 2.75
105 106 4.066646 TCCACAAAGTTGACAATCGAGA 57.933 40.909 0.00 0.00 0.00 4.04
106 107 4.452114 TCATCCACAAAGTTGACAATCGAG 59.548 41.667 0.00 0.00 0.00 4.04
107 108 4.384940 TCATCCACAAAGTTGACAATCGA 58.615 39.130 0.00 0.00 0.00 3.59
108 109 4.747540 TCATCCACAAAGTTGACAATCG 57.252 40.909 0.00 0.00 0.00 3.34
109 110 6.149973 TCAGATCATCCACAAAGTTGACAATC 59.850 38.462 0.00 0.00 0.00 2.67
110 111 6.005823 TCAGATCATCCACAAAGTTGACAAT 58.994 36.000 0.00 0.00 0.00 2.71
111 112 5.239306 GTCAGATCATCCACAAAGTTGACAA 59.761 40.000 0.00 0.00 34.22 3.18
112 113 4.756642 GTCAGATCATCCACAAAGTTGACA 59.243 41.667 0.00 0.00 34.22 3.58
113 114 4.143030 CGTCAGATCATCCACAAAGTTGAC 60.143 45.833 0.00 0.00 0.00 3.18
114 115 3.996363 CGTCAGATCATCCACAAAGTTGA 59.004 43.478 0.00 0.00 0.00 3.18
115 116 3.425359 GCGTCAGATCATCCACAAAGTTG 60.425 47.826 0.00 0.00 0.00 3.16
116 117 2.744202 GCGTCAGATCATCCACAAAGTT 59.256 45.455 0.00 0.00 0.00 2.66
117 118 2.350522 GCGTCAGATCATCCACAAAGT 58.649 47.619 0.00 0.00 0.00 2.66
118 119 1.325640 CGCGTCAGATCATCCACAAAG 59.674 52.381 0.00 0.00 0.00 2.77
119 120 1.337728 ACGCGTCAGATCATCCACAAA 60.338 47.619 5.58 0.00 0.00 2.83
120 121 0.246360 ACGCGTCAGATCATCCACAA 59.754 50.000 5.58 0.00 0.00 3.33
121 122 1.099689 TACGCGTCAGATCATCCACA 58.900 50.000 18.63 0.00 0.00 4.17
122 123 1.478137 GTACGCGTCAGATCATCCAC 58.522 55.000 18.63 0.00 0.00 4.02
123 124 0.028902 CGTACGCGTCAGATCATCCA 59.971 55.000 18.63 0.00 0.00 3.41
124 125 2.784712 CGTACGCGTCAGATCATCC 58.215 57.895 18.63 0.00 0.00 3.51
135 136 1.126079 ACACTTTCAAGACGTACGCG 58.874 50.000 16.72 3.53 44.93 6.01
136 137 1.396815 GCACACTTTCAAGACGTACGC 60.397 52.381 16.72 8.42 0.00 4.42
137 138 1.855978 TGCACACTTTCAAGACGTACG 59.144 47.619 15.01 15.01 0.00 3.67
138 139 2.348591 GCTGCACACTTTCAAGACGTAC 60.349 50.000 0.00 0.00 0.00 3.67
139 140 1.864711 GCTGCACACTTTCAAGACGTA 59.135 47.619 0.00 0.00 0.00 3.57
140 141 0.657840 GCTGCACACTTTCAAGACGT 59.342 50.000 0.00 0.00 0.00 4.34
141 142 0.040958 GGCTGCACACTTTCAAGACG 60.041 55.000 0.50 0.00 0.00 4.18
142 143 1.024271 TGGCTGCACACTTTCAAGAC 58.976 50.000 0.50 0.00 0.00 3.01
143 144 1.761449 TTGGCTGCACACTTTCAAGA 58.239 45.000 0.50 0.00 0.00 3.02
144 145 2.806608 ATTGGCTGCACACTTTCAAG 57.193 45.000 0.50 0.00 0.00 3.02
145 146 2.030007 GCTATTGGCTGCACACTTTCAA 60.030 45.455 0.50 0.00 38.06 2.69
146 147 1.541147 GCTATTGGCTGCACACTTTCA 59.459 47.619 0.50 0.00 38.06 2.69
147 148 1.541147 TGCTATTGGCTGCACACTTTC 59.459 47.619 0.50 0.00 42.39 2.62
148 149 1.619654 TGCTATTGGCTGCACACTTT 58.380 45.000 0.50 0.00 42.39 2.66
149 150 1.542915 CTTGCTATTGGCTGCACACTT 59.457 47.619 0.50 0.00 42.39 3.16
150 151 1.171308 CTTGCTATTGGCTGCACACT 58.829 50.000 0.50 0.00 42.39 3.55
151 152 0.171903 CCTTGCTATTGGCTGCACAC 59.828 55.000 0.50 0.00 42.39 3.82
152 153 1.597797 GCCTTGCTATTGGCTGCACA 61.598 55.000 0.50 0.00 45.26 4.57
153 154 1.140375 GCCTTGCTATTGGCTGCAC 59.860 57.895 0.50 0.00 45.26 4.57
154 155 3.607163 GCCTTGCTATTGGCTGCA 58.393 55.556 0.50 0.00 45.26 4.41
158 159 1.669999 CCAGTGGCCTTGCTATTGGC 61.670 60.000 3.32 0.00 39.58 4.52
159 160 1.039233 CCCAGTGGCCTTGCTATTGG 61.039 60.000 3.32 6.95 44.09 3.16
160 161 1.039233 CCCCAGTGGCCTTGCTATTG 61.039 60.000 3.32 0.00 0.00 1.90
161 162 1.307647 CCCCAGTGGCCTTGCTATT 59.692 57.895 3.32 0.00 0.00 1.73
162 163 2.693871 CCCCCAGTGGCCTTGCTAT 61.694 63.158 3.32 0.00 0.00 2.97
163 164 3.338250 CCCCCAGTGGCCTTGCTA 61.338 66.667 3.32 0.00 0.00 3.49
165 166 2.223464 TTATCCCCCAGTGGCCTTGC 62.223 60.000 3.32 0.00 0.00 4.01
166 167 0.334676 TTTATCCCCCAGTGGCCTTG 59.665 55.000 3.32 2.08 0.00 3.61
167 168 1.089123 TTTTATCCCCCAGTGGCCTT 58.911 50.000 3.32 0.00 0.00 4.35
168 169 0.335019 GTTTTATCCCCCAGTGGCCT 59.665 55.000 3.32 0.00 0.00 5.19
169 170 0.040499 TGTTTTATCCCCCAGTGGCC 59.960 55.000 2.61 0.00 0.00 5.36
170 171 1.931635 TTGTTTTATCCCCCAGTGGC 58.068 50.000 2.61 0.00 0.00 5.01
171 172 2.687935 CGATTGTTTTATCCCCCAGTGG 59.312 50.000 0.63 0.63 0.00 4.00
172 173 3.352648 ACGATTGTTTTATCCCCCAGTG 58.647 45.455 0.00 0.00 0.00 3.66
173 174 3.265995 AGACGATTGTTTTATCCCCCAGT 59.734 43.478 0.00 0.00 0.00 4.00
174 175 3.627577 CAGACGATTGTTTTATCCCCCAG 59.372 47.826 0.00 0.00 0.00 4.45
175 176 3.009695 ACAGACGATTGTTTTATCCCCCA 59.990 43.478 0.00 0.00 0.00 4.96
176 177 3.377172 CACAGACGATTGTTTTATCCCCC 59.623 47.826 0.00 0.00 0.00 5.40
177 178 3.181500 GCACAGACGATTGTTTTATCCCC 60.181 47.826 0.00 0.00 0.00 4.81
178 179 3.181500 GGCACAGACGATTGTTTTATCCC 60.181 47.826 0.00 0.00 0.00 3.85
179 180 3.181500 GGGCACAGACGATTGTTTTATCC 60.181 47.826 0.00 0.00 0.00 2.59
180 181 3.438781 TGGGCACAGACGATTGTTTTATC 59.561 43.478 0.00 0.00 0.00 1.75
181 182 3.417101 TGGGCACAGACGATTGTTTTAT 58.583 40.909 0.00 0.00 0.00 1.40
182 183 2.852449 TGGGCACAGACGATTGTTTTA 58.148 42.857 0.00 0.00 0.00 1.52
183 184 1.686355 TGGGCACAGACGATTGTTTT 58.314 45.000 0.00 0.00 0.00 2.43
184 185 1.686355 TTGGGCACAGACGATTGTTT 58.314 45.000 0.00 0.00 0.00 2.83
185 186 1.812571 GATTGGGCACAGACGATTGTT 59.187 47.619 0.00 0.00 0.00 2.83
186 187 1.453155 GATTGGGCACAGACGATTGT 58.547 50.000 0.00 0.00 0.00 2.71
187 188 0.734889 GGATTGGGCACAGACGATTG 59.265 55.000 0.00 0.00 0.00 2.67
188 189 0.744414 CGGATTGGGCACAGACGATT 60.744 55.000 3.31 0.00 0.00 3.34
189 190 1.153369 CGGATTGGGCACAGACGAT 60.153 57.895 3.31 0.00 0.00 3.73
190 191 2.107041 AACGGATTGGGCACAGACGA 62.107 55.000 14.53 0.00 0.00 4.20
191 192 1.635663 GAACGGATTGGGCACAGACG 61.636 60.000 7.35 7.35 0.00 4.18
192 193 0.321653 AGAACGGATTGGGCACAGAC 60.322 55.000 0.00 0.00 0.00 3.51
193 194 1.066430 GTAGAACGGATTGGGCACAGA 60.066 52.381 0.00 0.00 0.00 3.41
194 195 1.338674 TGTAGAACGGATTGGGCACAG 60.339 52.381 0.00 0.00 0.00 3.66
195 196 0.687920 TGTAGAACGGATTGGGCACA 59.312 50.000 0.00 0.00 0.00 4.57
196 197 1.670811 CATGTAGAACGGATTGGGCAC 59.329 52.381 0.00 0.00 0.00 5.01
197 198 1.408127 CCATGTAGAACGGATTGGGCA 60.408 52.381 0.00 0.00 0.00 5.36
198 199 1.308998 CCATGTAGAACGGATTGGGC 58.691 55.000 0.00 0.00 0.00 5.36
199 200 2.710096 ACCATGTAGAACGGATTGGG 57.290 50.000 0.00 0.00 0.00 4.12
200 201 3.128589 CCAAACCATGTAGAACGGATTGG 59.871 47.826 6.41 6.41 43.60 3.16
201 202 3.756434 ACCAAACCATGTAGAACGGATTG 59.244 43.478 0.00 0.00 33.62 2.67
202 203 4.007659 GACCAAACCATGTAGAACGGATT 58.992 43.478 0.00 0.00 0.00 3.01
203 204 3.008594 TGACCAAACCATGTAGAACGGAT 59.991 43.478 0.00 0.00 0.00 4.18
204 205 2.369203 TGACCAAACCATGTAGAACGGA 59.631 45.455 0.00 0.00 0.00 4.69
205 206 2.773487 TGACCAAACCATGTAGAACGG 58.227 47.619 0.00 0.00 0.00 4.44
206 207 4.513692 TCTTTGACCAAACCATGTAGAACG 59.486 41.667 0.00 0.00 0.00 3.95
207 208 6.385649 TTCTTTGACCAAACCATGTAGAAC 57.614 37.500 0.00 0.00 0.00 3.01
208 209 7.521423 CGAATTCTTTGACCAAACCATGTAGAA 60.521 37.037 3.52 0.00 0.00 2.10
209 210 6.072728 CGAATTCTTTGACCAAACCATGTAGA 60.073 38.462 3.52 0.00 0.00 2.59
210 211 6.086222 CGAATTCTTTGACCAAACCATGTAG 58.914 40.000 3.52 0.00 0.00 2.74
211 212 5.048364 CCGAATTCTTTGACCAAACCATGTA 60.048 40.000 3.52 0.00 0.00 2.29
212 213 4.261994 CCGAATTCTTTGACCAAACCATGT 60.262 41.667 3.52 0.00 0.00 3.21
213 214 4.022416 TCCGAATTCTTTGACCAAACCATG 60.022 41.667 3.52 0.00 0.00 3.66
214 215 4.148838 TCCGAATTCTTTGACCAAACCAT 58.851 39.130 3.52 0.00 0.00 3.55
215 216 3.556999 TCCGAATTCTTTGACCAAACCA 58.443 40.909 3.52 0.00 0.00 3.67
216 217 4.217550 TGATCCGAATTCTTTGACCAAACC 59.782 41.667 3.52 0.00 0.00 3.27
217 218 5.371115 TGATCCGAATTCTTTGACCAAAC 57.629 39.130 3.52 0.00 0.00 2.93
218 219 6.588719 ATTGATCCGAATTCTTTGACCAAA 57.411 33.333 3.52 0.00 0.00 3.28
219 220 6.208402 TGAATTGATCCGAATTCTTTGACCAA 59.792 34.615 15.64 1.72 41.21 3.67
220 221 5.709631 TGAATTGATCCGAATTCTTTGACCA 59.290 36.000 15.64 0.00 41.21 4.02
221 222 6.194796 TGAATTGATCCGAATTCTTTGACC 57.805 37.500 15.64 0.00 41.21 4.02
222 223 6.127897 ACCTGAATTGATCCGAATTCTTTGAC 60.128 38.462 15.64 0.00 41.21 3.18
223 224 5.945784 ACCTGAATTGATCCGAATTCTTTGA 59.054 36.000 15.64 0.00 41.21 2.69
224 225 6.032094 CACCTGAATTGATCCGAATTCTTTG 58.968 40.000 15.64 8.80 41.21 2.77
225 226 5.126061 CCACCTGAATTGATCCGAATTCTTT 59.874 40.000 15.64 2.59 41.21 2.52
226 227 4.641989 CCACCTGAATTGATCCGAATTCTT 59.358 41.667 15.64 0.00 41.21 2.52
227 228 4.202441 CCACCTGAATTGATCCGAATTCT 58.798 43.478 15.64 0.00 41.21 2.40
228 229 3.947834 ACCACCTGAATTGATCCGAATTC 59.052 43.478 10.24 10.24 41.07 2.17
229 230 3.696051 CACCACCTGAATTGATCCGAATT 59.304 43.478 0.00 0.00 0.00 2.17
230 231 3.054434 TCACCACCTGAATTGATCCGAAT 60.054 43.478 0.00 0.00 0.00 3.34
231 232 2.304470 TCACCACCTGAATTGATCCGAA 59.696 45.455 0.00 0.00 0.00 4.30
232 233 1.905894 TCACCACCTGAATTGATCCGA 59.094 47.619 0.00 0.00 0.00 4.55
233 234 2.093500 TCTCACCACCTGAATTGATCCG 60.093 50.000 0.00 0.00 0.00 4.18
234 235 3.634397 TCTCACCACCTGAATTGATCC 57.366 47.619 0.00 0.00 0.00 3.36
235 236 3.372206 CGTTCTCACCACCTGAATTGATC 59.628 47.826 0.00 0.00 0.00 2.92
236 237 3.007940 TCGTTCTCACCACCTGAATTGAT 59.992 43.478 0.00 0.00 0.00 2.57
237 238 2.367241 TCGTTCTCACCACCTGAATTGA 59.633 45.455 0.00 0.00 0.00 2.57
238 239 2.480419 GTCGTTCTCACCACCTGAATTG 59.520 50.000 0.00 0.00 0.00 2.32
239 240 2.767505 GTCGTTCTCACCACCTGAATT 58.232 47.619 0.00 0.00 0.00 2.17
240 241 1.336887 CGTCGTTCTCACCACCTGAAT 60.337 52.381 0.00 0.00 0.00 2.57
241 242 0.031585 CGTCGTTCTCACCACCTGAA 59.968 55.000 0.00 0.00 0.00 3.02
242 243 0.820482 TCGTCGTTCTCACCACCTGA 60.820 55.000 0.00 0.00 0.00 3.86
243 244 0.243907 ATCGTCGTTCTCACCACCTG 59.756 55.000 0.00 0.00 0.00 4.00
244 245 0.966920 AATCGTCGTTCTCACCACCT 59.033 50.000 0.00 0.00 0.00 4.00
245 246 1.068474 CAATCGTCGTTCTCACCACC 58.932 55.000 0.00 0.00 0.00 4.61
246 247 0.438830 GCAATCGTCGTTCTCACCAC 59.561 55.000 0.00 0.00 0.00 4.16
247 248 0.317160 AGCAATCGTCGTTCTCACCA 59.683 50.000 0.00 0.00 0.00 4.17
248 249 2.273370 TAGCAATCGTCGTTCTCACC 57.727 50.000 0.00 0.00 0.00 4.02
249 250 2.344741 GGTTAGCAATCGTCGTTCTCAC 59.655 50.000 0.00 0.00 0.00 3.51
250 251 2.029739 TGGTTAGCAATCGTCGTTCTCA 60.030 45.455 0.00 0.00 0.00 3.27
251 252 2.599082 CTGGTTAGCAATCGTCGTTCTC 59.401 50.000 0.00 0.00 0.00 2.87
252 253 2.029290 ACTGGTTAGCAATCGTCGTTCT 60.029 45.455 0.00 0.00 0.00 3.01
253 254 2.334838 ACTGGTTAGCAATCGTCGTTC 58.665 47.619 0.00 0.00 0.00 3.95
254 255 2.450609 ACTGGTTAGCAATCGTCGTT 57.549 45.000 0.00 0.00 0.00 3.85
255 256 2.066262 CAACTGGTTAGCAATCGTCGT 58.934 47.619 0.00 0.00 0.00 4.34
256 257 2.092211 GTCAACTGGTTAGCAATCGTCG 59.908 50.000 0.00 0.00 0.00 5.12
257 258 3.326747 AGTCAACTGGTTAGCAATCGTC 58.673 45.455 0.00 0.00 0.00 4.20
258 259 3.402628 AGTCAACTGGTTAGCAATCGT 57.597 42.857 0.00 0.00 0.00 3.73
259 260 3.303495 CGTAGTCAACTGGTTAGCAATCG 59.697 47.826 0.00 0.00 0.00 3.34
260 261 4.243270 ACGTAGTCAACTGGTTAGCAATC 58.757 43.478 0.00 0.00 29.74 2.67
261 262 4.267349 ACGTAGTCAACTGGTTAGCAAT 57.733 40.909 0.00 0.00 29.74 3.56
262 263 3.738830 ACGTAGTCAACTGGTTAGCAA 57.261 42.857 0.00 0.00 29.74 3.91
263 264 3.738830 AACGTAGTCAACTGGTTAGCA 57.261 42.857 0.00 0.00 45.00 3.49
264 265 5.413969 AAAAACGTAGTCAACTGGTTAGC 57.586 39.130 0.00 0.00 45.00 3.09
288 289 8.314751 GCCTGGAGATGCTCTAATAAGTATAAA 58.685 37.037 0.00 0.00 0.00 1.40
289 290 7.363007 CGCCTGGAGATGCTCTAATAAGTATAA 60.363 40.741 0.00 0.00 0.00 0.98
290 291 6.095580 CGCCTGGAGATGCTCTAATAAGTATA 59.904 42.308 0.00 0.00 0.00 1.47
291 292 5.105554 CGCCTGGAGATGCTCTAATAAGTAT 60.106 44.000 0.00 0.00 0.00 2.12
292 293 4.218635 CGCCTGGAGATGCTCTAATAAGTA 59.781 45.833 0.00 0.00 0.00 2.24
293 294 3.006323 CGCCTGGAGATGCTCTAATAAGT 59.994 47.826 0.00 0.00 0.00 2.24
294 295 3.583806 CGCCTGGAGATGCTCTAATAAG 58.416 50.000 0.00 0.00 0.00 1.73
295 296 2.289072 GCGCCTGGAGATGCTCTAATAA 60.289 50.000 0.09 0.00 0.00 1.40
296 297 1.273606 GCGCCTGGAGATGCTCTAATA 59.726 52.381 0.09 0.00 0.00 0.98
297 298 0.034616 GCGCCTGGAGATGCTCTAAT 59.965 55.000 0.09 0.00 0.00 1.73
807 873 1.444212 CGGCGCATTTGGGAACTTG 60.444 57.895 10.83 0.00 0.00 3.16
1170 1240 3.557577 TGGTCTTCAAAATGCATGTCG 57.442 42.857 0.00 0.00 0.00 4.35
1226 1296 2.287009 GCTTTTCCTTTCAGTGTGTCGG 60.287 50.000 0.00 0.00 0.00 4.79
1244 1314 1.173913 GTTGGAGTAATTGCCCGCTT 58.826 50.000 0.00 0.00 0.00 4.68
1258 1328 0.320374 AAGATGTCTTCGGCGTTGGA 59.680 50.000 6.85 0.65 0.00 3.53
1379 1449 1.601903 GGTCAATTGCACTCACGTTGA 59.398 47.619 0.00 0.00 0.00 3.18
1384 1454 0.166814 GAGCGGTCAATTGCACTCAC 59.833 55.000 10.30 0.00 0.00 3.51
1391 1461 0.389817 TCGTCCTGAGCGGTCAATTG 60.390 55.000 19.16 10.11 30.14 2.32
1468 1539 4.902443 TCAACTTGTCAACCGCATTTTA 57.098 36.364 0.00 0.00 0.00 1.52
1473 1544 0.736053 GGTTCAACTTGTCAACCGCA 59.264 50.000 0.00 0.00 30.63 5.69
1567 1642 7.602265 ACAAAACAAGTTTAGCACAAGAAACAT 59.398 29.630 0.00 0.00 37.89 2.71
1600 1675 7.041107 ACAAGTTTTGTGCAATGTTCAACTAT 58.959 30.769 0.00 0.00 43.48 2.12
1632 1707 3.551635 TCTTGGTCCTCTTCTCCTCTT 57.448 47.619 0.00 0.00 0.00 2.85
1729 1804 6.238842 CCAAATCATCAATATCCTCACGCTTT 60.239 38.462 0.00 0.00 0.00 3.51
1875 1951 1.472480 CCTTTTTCGTGCCATCCGATT 59.528 47.619 0.00 0.00 33.81 3.34
1877 1953 0.035598 TCCTTTTTCGTGCCATCCGA 59.964 50.000 0.00 0.00 0.00 4.55
1891 1967 7.119387 TCCTCTTCTTCTTTTCTTTGTCCTTT 58.881 34.615 0.00 0.00 0.00 3.11
1894 1970 6.944234 TTCCTCTTCTTCTTTTCTTTGTCC 57.056 37.500 0.00 0.00 0.00 4.02
1924 2003 6.549912 TCCATAGCATTTTTGATCTCATCG 57.450 37.500 0.00 0.00 0.00 3.84
1994 2074 0.804989 GCGACATCTTGGTTCCTTGG 59.195 55.000 0.00 0.00 0.00 3.61
2060 2161 2.239654 CCAATGCCACTTTCCTCTCCTA 59.760 50.000 0.00 0.00 0.00 2.94
2096 2197 0.687757 TTAGCTCGCTCCTCCATGGT 60.688 55.000 12.58 0.00 37.07 3.55
2119 2220 3.094572 CAAGTGCTTCTCCCATTCCAAT 58.905 45.455 0.00 0.00 0.00 3.16
2151 2252 3.302434 CGCATCATTGAACAAAGATGTGC 59.698 43.478 23.15 15.70 44.43 4.57
2297 2487 2.994417 GGAACCCATGCCGCCAAA 60.994 61.111 0.00 0.00 0.00 3.28
2336 2593 2.953648 CCATAGAACTCATGCATGCCAA 59.046 45.455 22.25 3.99 0.00 4.52
2340 2597 2.292569 GCCACCATAGAACTCATGCATG 59.707 50.000 21.07 21.07 0.00 4.06
2341 2598 2.174210 AGCCACCATAGAACTCATGCAT 59.826 45.455 0.00 0.00 0.00 3.96
2342 2599 1.561076 AGCCACCATAGAACTCATGCA 59.439 47.619 0.00 0.00 0.00 3.96
2348 2623 2.619074 GCTCCAAAGCCACCATAGAACT 60.619 50.000 0.00 0.00 43.10 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.