Multiple sequence alignment - TraesCS2B01G531500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G531500 chr2B 100.000 3476 0 0 1 3476 727207413 727203938 0.000000e+00 6420.0
1 TraesCS2B01G531500 chr2B 97.208 1397 35 4 962 2357 727084905 727086298 0.000000e+00 2361.0
2 TraesCS2B01G531500 chr2B 78.330 1066 183 28 1265 2316 709784373 709783342 0.000000e+00 645.0
3 TraesCS2B01G531500 chr2B 86.567 67 9 0 1419 1485 101073273 101073339 1.340000e-09 75.0
4 TraesCS2B01G531500 chr2A 97.258 2881 55 5 1 2865 732854296 732851424 0.000000e+00 4861.0
5 TraesCS2B01G531500 chr2A 94.484 1396 57 4 962 2357 732599375 732600750 0.000000e+00 2134.0
6 TraesCS2B01G531500 chr2A 92.831 544 27 3 2945 3476 732851423 732850880 0.000000e+00 778.0
7 TraesCS2B01G531500 chr2A 77.605 1027 179 31 1306 2316 722072238 722071247 3.010000e-160 575.0
8 TraesCS2B01G531500 chr1B 80.000 1390 217 41 957 2321 656422870 656421517 0.000000e+00 970.0
9 TraesCS2B01G531500 chr2D 78.100 621 104 17 1706 2321 587242009 587241416 7.090000e-97 364.0
10 TraesCS2B01G531500 chr2D 80.376 479 74 14 1256 1719 587257903 587257430 2.570000e-91 346.0
11 TraesCS2B01G531500 chr2D 78.512 121 24 2 1366 1485 64732666 64732785 1.030000e-10 78.7
12 TraesCS2B01G531500 chr4B 84.211 114 18 0 504 617 143894817 143894930 1.020000e-20 111.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G531500 chr2B 727203938 727207413 3475 True 6420.0 6420 100.0000 1 3476 1 chr2B.!!$R2 3475
1 TraesCS2B01G531500 chr2B 727084905 727086298 1393 False 2361.0 2361 97.2080 962 2357 1 chr2B.!!$F2 1395
2 TraesCS2B01G531500 chr2B 709783342 709784373 1031 True 645.0 645 78.3300 1265 2316 1 chr2B.!!$R1 1051
3 TraesCS2B01G531500 chr2A 732850880 732854296 3416 True 2819.5 4861 95.0445 1 3476 2 chr2A.!!$R2 3475
4 TraesCS2B01G531500 chr2A 732599375 732600750 1375 False 2134.0 2134 94.4840 962 2357 1 chr2A.!!$F1 1395
5 TraesCS2B01G531500 chr2A 722071247 722072238 991 True 575.0 575 77.6050 1306 2316 1 chr2A.!!$R1 1010
6 TraesCS2B01G531500 chr1B 656421517 656422870 1353 True 970.0 970 80.0000 957 2321 1 chr1B.!!$R1 1364
7 TraesCS2B01G531500 chr2D 587241416 587242009 593 True 364.0 364 78.1000 1706 2321 1 chr2D.!!$R1 615

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
795 796 0.179026 CCCATGGCTCTGACATCCAG 60.179 60.0 6.09 0.0 44.27 3.86 F
843 844 2.283145 AGGTTGACAAGCAGAAGCAT 57.717 45.0 18.93 0.0 45.49 3.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2376 2405 1.227999 ACAAGCCGAATGGACACACG 61.228 55.0 0.0 0.0 37.49 4.49 R
2698 2742 1.408969 ACCGCCAAAAACCTGATGTT 58.591 45.0 0.0 0.0 39.43 2.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
159 160 0.908198 AGCCAGAGGTTGAGATGGAC 59.092 55.000 0.00 0.00 34.60 4.02
160 161 0.615331 GCCAGAGGTTGAGATGGACA 59.385 55.000 0.00 0.00 34.60 4.02
190 191 1.133809 CCTCTTGGGGGAACAGGTCA 61.134 60.000 0.00 0.00 0.00 4.02
314 315 2.842496 TGCTCAAAGAGATGATGGAGGT 59.158 45.455 0.00 0.00 0.00 3.85
588 589 2.421619 CAGCAGTCTCAACTTCTTCCC 58.578 52.381 0.00 0.00 31.71 3.97
693 694 3.140332 AGGGGCATAAGAAGGGGAAATAC 59.860 47.826 0.00 0.00 0.00 1.89
748 749 1.132500 GATGGAAGAGGAATCCGGGT 58.868 55.000 0.00 0.00 39.98 5.28
795 796 0.179026 CCCATGGCTCTGACATCCAG 60.179 60.000 6.09 0.00 44.27 3.86
807 808 4.886489 TCTGACATCCAGAGTAGTGATCAG 59.114 45.833 0.00 0.00 46.38 2.90
843 844 2.283145 AGGTTGACAAGCAGAAGCAT 57.717 45.000 18.93 0.00 45.49 3.79
935 936 3.587061 ACCAAGGTTGAGATGGACATACA 59.413 43.478 0.00 0.00 37.66 2.29
939 940 5.762179 AGGTTGAGATGGACATACAGAAA 57.238 39.130 0.00 0.00 0.00 2.52
983 984 5.247337 TGGACGATATGGACATAGGCAAATA 59.753 40.000 0.00 0.00 0.00 1.40
1234 1243 5.759763 GGGAATATATTTGCCCTTTTGCTTG 59.240 40.000 12.91 0.00 37.59 4.01
1248 1257 6.073003 CCCTTTTGCTTGTCTAAGACTAGTTG 60.073 42.308 0.00 0.00 37.63 3.16
1533 1542 4.579454 ATCAGGCAACACGTACGTATAT 57.421 40.909 22.34 6.89 41.41 0.86
1632 1656 6.549433 TTAGTAGTTAACGGGGTGATTGAT 57.451 37.500 0.00 0.00 0.00 2.57
1649 1673 5.359860 TGATTGATGAATGCTTGCAGAATCT 59.640 36.000 12.71 0.00 0.00 2.40
1822 1846 3.739519 GCATACCATCTGCTTCGAGAACT 60.740 47.826 0.00 0.00 36.68 3.01
1963 1987 4.186856 TCTTGCTCGACAACATCATACA 57.813 40.909 0.00 0.00 33.68 2.29
1964 1988 4.758688 TCTTGCTCGACAACATCATACAT 58.241 39.130 0.00 0.00 33.68 2.29
2354 2383 5.176774 CGCGTAGGCAATGTATTTATCTGAA 59.823 40.000 8.32 0.00 39.92 3.02
2374 2403 3.083349 TCCCGGCTGGACAGGATG 61.083 66.667 15.09 0.00 38.61 3.51
2375 2404 4.864334 CCCGGCTGGACAGGATGC 62.864 72.222 15.09 0.00 42.53 3.91
2376 2405 4.864334 CCGGCTGGACAGGATGCC 62.864 72.222 5.28 0.00 42.53 4.40
2497 2526 3.728845 ACTTATGTTGTGCGAGTTGACT 58.271 40.909 0.00 0.00 0.00 3.41
2505 2534 2.159099 TGTGCGAGTTGACTCTGACTTT 60.159 45.455 9.28 0.00 40.75 2.66
2536 2565 5.644977 TGTTTTGTTGTGTGATTGGTGTA 57.355 34.783 0.00 0.00 0.00 2.90
2571 2600 9.979578 AACTCATGCTATCAGACTATTTTCTAG 57.020 33.333 0.00 0.00 0.00 2.43
2572 2601 9.142014 ACTCATGCTATCAGACTATTTTCTAGT 57.858 33.333 0.00 0.00 0.00 2.57
2642 2671 6.824196 TCTTGTCTGGTTTTTGTGTATGTGTA 59.176 34.615 0.00 0.00 0.00 2.90
2706 2751 9.319143 CTTTAGGAAACACTATCTAACATCAGG 57.681 37.037 0.00 0.00 0.00 3.86
2728 2773 1.365699 TTTGGCGGTTTAGAGATCGC 58.634 50.000 0.00 0.00 46.35 4.58
2743 2788 2.040213 ATCGCGAGCGCAAATCTTGG 62.040 55.000 16.66 0.00 42.06 3.61
2849 2894 1.069703 TCGTTCGGTAGTGAACTCGTG 60.070 52.381 5.25 0.00 44.76 4.35
2865 2910 1.271446 CGTGATATGTCTCAGCGCGG 61.271 60.000 8.83 0.00 0.00 6.46
2866 2911 0.030773 GTGATATGTCTCAGCGCGGA 59.969 55.000 10.50 10.50 0.00 5.54
2867 2912 0.030773 TGATATGTCTCAGCGCGGAC 59.969 55.000 19.01 19.01 0.00 4.79
2868 2913 0.999228 GATATGTCTCAGCGCGGACG 60.999 60.000 19.91 11.79 44.07 4.79
2887 2932 3.844741 GGGAGACGAGGAGCTACC 58.155 66.667 0.00 0.00 39.35 3.18
2898 2943 2.605837 GGAGCTACCTTAGGCAACTC 57.394 55.000 0.00 2.24 41.48 3.01
2899 2944 1.139256 GGAGCTACCTTAGGCAACTCC 59.861 57.143 15.28 15.28 41.48 3.85
2900 2945 3.481821 GGAGCTACCTTAGGCAACTCCA 61.482 54.545 21.78 0.00 41.50 3.86
2901 2946 4.953478 GGAGCTACCTTAGGCAACTCCAA 61.953 52.174 21.78 0.00 41.50 3.53
2902 2947 6.956595 GGAGCTACCTTAGGCAACTCCAAC 62.957 54.167 21.78 2.96 41.50 3.77
2910 2955 3.726517 CAACTCCAACGCGCCCAG 61.727 66.667 5.73 0.00 0.00 4.45
2916 2961 3.876198 CAACGCGCCCAGGCATAC 61.876 66.667 5.73 0.00 42.06 2.39
2917 2962 4.096003 AACGCGCCCAGGCATACT 62.096 61.111 5.73 0.00 42.06 2.12
2918 2963 4.530857 ACGCGCCCAGGCATACTC 62.531 66.667 5.73 0.00 42.06 2.59
2919 2964 4.227134 CGCGCCCAGGCATACTCT 62.227 66.667 9.78 0.00 42.06 3.24
2920 2965 2.280457 GCGCCCAGGCATACTCTC 60.280 66.667 9.78 0.00 42.06 3.20
2921 2966 2.801631 GCGCCCAGGCATACTCTCT 61.802 63.158 9.78 0.00 42.06 3.10
2922 2967 1.068753 CGCCCAGGCATACTCTCTG 59.931 63.158 9.78 0.00 42.06 3.35
2923 2968 1.680522 CGCCCAGGCATACTCTCTGT 61.681 60.000 9.78 0.00 42.06 3.41
2924 2969 0.543749 GCCCAGGCATACTCTCTGTT 59.456 55.000 3.12 0.00 41.49 3.16
2925 2970 1.065126 GCCCAGGCATACTCTCTGTTT 60.065 52.381 3.12 0.00 41.49 2.83
2926 2971 2.636830 CCCAGGCATACTCTCTGTTTG 58.363 52.381 0.00 0.00 0.00 2.93
2927 2972 2.026822 CCCAGGCATACTCTCTGTTTGT 60.027 50.000 0.00 0.00 31.59 2.83
2928 2973 3.005554 CCAGGCATACTCTCTGTTTGTG 58.994 50.000 0.00 0.00 31.59 3.33
2929 2974 3.557898 CCAGGCATACTCTCTGTTTGTGT 60.558 47.826 0.00 0.00 31.59 3.72
2930 2975 3.681897 CAGGCATACTCTCTGTTTGTGTC 59.318 47.826 0.00 0.00 31.59 3.67
2931 2976 3.003480 GGCATACTCTCTGTTTGTGTCC 58.997 50.000 0.00 0.00 31.59 4.02
2932 2977 2.668457 GCATACTCTCTGTTTGTGTCCG 59.332 50.000 0.00 0.00 31.59 4.79
2933 2978 3.861131 GCATACTCTCTGTTTGTGTCCGT 60.861 47.826 0.00 0.00 31.59 4.69
2934 2979 2.225068 ACTCTCTGTTTGTGTCCGTG 57.775 50.000 0.00 0.00 0.00 4.94
2935 2980 0.861837 CTCTCTGTTTGTGTCCGTGC 59.138 55.000 0.00 0.00 0.00 5.34
2936 2981 0.176910 TCTCTGTTTGTGTCCGTGCA 59.823 50.000 0.00 0.00 0.00 4.57
2937 2982 0.583438 CTCTGTTTGTGTCCGTGCAG 59.417 55.000 0.00 0.00 0.00 4.41
2938 2983 0.176910 TCTGTTTGTGTCCGTGCAGA 59.823 50.000 0.00 0.00 0.00 4.26
2939 2984 0.304705 CTGTTTGTGTCCGTGCAGAC 59.695 55.000 0.00 0.00 37.28 3.51
2940 2985 0.391793 TGTTTGTGTCCGTGCAGACA 60.392 50.000 4.76 4.76 44.38 3.41
2969 3014 4.481368 TGCCCAACGTAGACATATTCTT 57.519 40.909 0.00 0.00 35.55 2.52
3083 3130 3.071479 TGTCCACTCGCATAACCTTTTC 58.929 45.455 0.00 0.00 0.00 2.29
3169 3226 2.886124 GCCTACGCGCTTCTCCAC 60.886 66.667 5.73 0.00 0.00 4.02
3181 3238 4.767255 CTCCACGCTCACCCTGCC 62.767 72.222 0.00 0.00 0.00 4.85
3217 3274 3.782443 CCCCTCGCCTTAAGCCGT 61.782 66.667 5.69 0.00 38.78 5.68
3225 3282 3.195698 CTTAAGCCGTGCTCGCCC 61.196 66.667 1.89 0.00 38.25 6.13
3281 3338 1.447317 CTGGTGTGCGGTTTGAGCTT 61.447 55.000 0.00 0.00 35.28 3.74
3389 3446 1.447489 CAGAGGAGCAACTCGCCTG 60.447 63.158 0.00 0.00 45.54 4.85
3407 3464 3.630013 TTGCTGCTGCCGGTCTCT 61.630 61.111 13.47 0.00 38.71 3.10
3450 3507 2.651361 CGACGACCTTCCAGTGCT 59.349 61.111 0.00 0.00 0.00 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
95 96 2.811431 TCTAACTTGTTTGCCACATCCG 59.189 45.455 0.00 0.00 34.43 4.18
159 160 1.089920 CCAAGAGGGATTTGCGTCTG 58.910 55.000 0.00 0.00 40.01 3.51
160 161 3.558674 CCAAGAGGGATTTGCGTCT 57.441 52.632 0.00 0.00 40.01 4.18
179 180 2.749800 GCCATATCCTTGACCTGTTCCC 60.750 54.545 0.00 0.00 0.00 3.97
190 191 2.423538 GCGACTTGTTTGCCATATCCTT 59.576 45.455 0.00 0.00 0.00 3.36
588 589 2.027377 ACTCTGAATCTGAAGGCCACAG 60.027 50.000 19.56 19.56 36.80 3.66
693 694 2.138656 GAGCAGCAGCACAAACCCTG 62.139 60.000 3.17 0.00 45.49 4.45
726 727 1.000283 CCGGATTCCTCTTCCATCTCG 60.000 57.143 0.00 0.00 32.45 4.04
764 765 3.788142 AGAGCCATGGGGAAGAAATCTTA 59.212 43.478 15.13 0.00 36.11 2.10
807 808 1.293924 CCTTCAGGTCGATCATGTGC 58.706 55.000 0.00 0.00 0.00 4.57
843 844 4.270008 TGTCGATCTCAACCTCAGTCATA 58.730 43.478 0.00 0.00 0.00 2.15
935 936 0.250513 GACCTCGGCCATCTGTTTCT 59.749 55.000 2.24 0.00 0.00 2.52
939 940 2.362503 TCGACCTCGGCCATCTGT 60.363 61.111 2.24 0.00 40.29 3.41
983 984 6.139679 TCTCCATGGTTAATTCTTGGACTT 57.860 37.500 12.58 0.00 35.49 3.01
1077 1078 1.072505 GAAGAAACCGCACCCCTCA 59.927 57.895 0.00 0.00 0.00 3.86
1248 1257 8.025445 AGAAGCATGTGTTAGAAATCAAACATC 58.975 33.333 0.00 0.00 0.00 3.06
1632 1656 7.143340 GCAAATATAGATTCTGCAAGCATTCA 58.857 34.615 10.41 0.00 33.19 2.57
1649 1673 2.295909 GGCCCAATCAAGCGCAAATATA 59.704 45.455 11.47 0.00 0.00 0.86
1963 1987 3.667497 ACCATCGATGATCTTGCGTAT 57.333 42.857 26.86 0.00 0.00 3.06
1964 1988 4.577834 TTACCATCGATGATCTTGCGTA 57.422 40.909 26.86 14.47 0.00 4.42
2334 2363 8.103305 GGGATCTTCAGATAAATACATTGCCTA 58.897 37.037 0.00 0.00 34.37 3.93
2372 2401 1.745115 CCGAATGGACACACGGCAT 60.745 57.895 0.00 0.00 38.98 4.40
2373 2402 2.358125 CCGAATGGACACACGGCA 60.358 61.111 0.00 0.00 38.98 5.69
2375 2404 1.671054 AAGCCGAATGGACACACGG 60.671 57.895 12.43 12.43 46.74 4.94
2376 2405 1.227999 ACAAGCCGAATGGACACACG 61.228 55.000 0.00 0.00 37.49 4.49
2603 2632 5.299279 ACCAGACAAGACAAAATACAGTTGG 59.701 40.000 0.00 0.00 0.00 3.77
2642 2671 4.460263 TCAAAGTGCTACCAGACAACAAT 58.540 39.130 0.00 0.00 0.00 2.71
2695 2739 2.817258 CCGCCAAAAACCTGATGTTAGA 59.183 45.455 0.00 0.00 35.67 2.10
2696 2740 2.556622 ACCGCCAAAAACCTGATGTTAG 59.443 45.455 0.00 0.00 35.67 2.34
2697 2741 2.588620 ACCGCCAAAAACCTGATGTTA 58.411 42.857 0.00 0.00 35.67 2.41
2698 2742 1.408969 ACCGCCAAAAACCTGATGTT 58.591 45.000 0.00 0.00 39.43 2.71
2706 2751 3.743886 CGATCTCTAAACCGCCAAAAAC 58.256 45.455 0.00 0.00 0.00 2.43
2728 2773 2.276868 CGCCAAGATTTGCGCTCG 60.277 61.111 9.73 0.00 44.64 5.03
2818 2863 4.446385 CACTACCGAACGACTGAAAATCAA 59.554 41.667 0.00 0.00 0.00 2.57
2849 2894 0.999228 CGTCCGCGCTGAGACATATC 60.999 60.000 18.26 0.00 33.08 1.63
2865 2910 3.878519 CTCCTCGTCTCCCGCGTC 61.879 72.222 4.92 0.00 36.19 5.19
2868 2913 2.516460 TAGCTCCTCGTCTCCCGC 60.516 66.667 0.00 0.00 36.19 6.13
2869 2914 2.188161 GGTAGCTCCTCGTCTCCCG 61.188 68.421 0.00 0.00 38.13 5.14
2870 2915 1.227946 AGGTAGCTCCTCGTCTCCC 59.772 63.158 0.00 0.00 44.42 4.30
2871 2916 4.991024 AGGTAGCTCCTCGTCTCC 57.009 61.111 0.00 0.00 44.42 3.71
2879 2924 2.605837 GAGTTGCCTAAGGTAGCTCC 57.394 55.000 0.00 0.00 39.04 4.70
2880 2925 1.831736 TGGAGTTGCCTAAGGTAGCTC 59.168 52.381 0.00 0.00 42.71 4.09
2881 2926 1.952621 TGGAGTTGCCTAAGGTAGCT 58.047 50.000 0.00 0.00 37.63 3.32
2882 2927 2.357075 GTTGGAGTTGCCTAAGGTAGC 58.643 52.381 0.00 0.00 37.63 3.58
2883 2928 2.618053 CGTTGGAGTTGCCTAAGGTAG 58.382 52.381 0.00 0.00 37.63 3.18
2884 2929 1.338389 GCGTTGGAGTTGCCTAAGGTA 60.338 52.381 0.00 0.00 37.63 3.08
2885 2930 0.605589 GCGTTGGAGTTGCCTAAGGT 60.606 55.000 0.00 0.00 37.63 3.50
2886 2931 1.635663 CGCGTTGGAGTTGCCTAAGG 61.636 60.000 0.00 0.00 37.63 2.69
2887 2932 1.787847 CGCGTTGGAGTTGCCTAAG 59.212 57.895 0.00 0.00 37.63 2.18
2888 2933 2.322081 GCGCGTTGGAGTTGCCTAA 61.322 57.895 8.43 0.00 37.63 2.69
2889 2934 2.740826 GCGCGTTGGAGTTGCCTA 60.741 61.111 8.43 0.00 37.63 3.93
2893 2938 3.726517 CTGGGCGCGTTGGAGTTG 61.727 66.667 8.43 0.00 0.00 3.16
2899 2944 3.876198 GTATGCCTGGGCGCGTTG 61.876 66.667 8.43 0.00 45.51 4.10
2900 2945 4.096003 AGTATGCCTGGGCGCGTT 62.096 61.111 8.43 0.00 45.51 4.84
2901 2946 4.530857 GAGTATGCCTGGGCGCGT 62.531 66.667 8.43 0.00 45.51 6.01
2902 2947 4.227134 AGAGTATGCCTGGGCGCG 62.227 66.667 0.00 0.00 45.51 6.86
2903 2948 2.280457 GAGAGTATGCCTGGGCGC 60.280 66.667 0.00 0.00 45.51 6.53
2904 2949 1.068753 CAGAGAGTATGCCTGGGCG 59.931 63.158 7.14 0.00 45.51 6.13
2905 2950 0.543749 AACAGAGAGTATGCCTGGGC 59.456 55.000 4.43 4.43 42.35 5.36
2906 2951 2.026822 ACAAACAGAGAGTATGCCTGGG 60.027 50.000 0.00 0.00 32.52 4.45
2907 2952 3.005554 CACAAACAGAGAGTATGCCTGG 58.994 50.000 0.00 0.00 32.52 4.45
2908 2953 3.668447 ACACAAACAGAGAGTATGCCTG 58.332 45.455 0.00 0.00 0.00 4.85
2909 2954 3.307059 GGACACAAACAGAGAGTATGCCT 60.307 47.826 0.00 0.00 0.00 4.75
2910 2955 3.003480 GGACACAAACAGAGAGTATGCC 58.997 50.000 0.00 0.00 0.00 4.40
2911 2956 2.668457 CGGACACAAACAGAGAGTATGC 59.332 50.000 0.00 0.00 0.00 3.14
2912 2957 3.675225 CACGGACACAAACAGAGAGTATG 59.325 47.826 0.00 0.00 0.00 2.39
2913 2958 3.861131 GCACGGACACAAACAGAGAGTAT 60.861 47.826 0.00 0.00 0.00 2.12
2914 2959 2.545113 GCACGGACACAAACAGAGAGTA 60.545 50.000 0.00 0.00 0.00 2.59
2915 2960 1.806623 GCACGGACACAAACAGAGAGT 60.807 52.381 0.00 0.00 0.00 3.24
2916 2961 0.861837 GCACGGACACAAACAGAGAG 59.138 55.000 0.00 0.00 0.00 3.20
2917 2962 0.176910 TGCACGGACACAAACAGAGA 59.823 50.000 0.00 0.00 0.00 3.10
2918 2963 0.583438 CTGCACGGACACAAACAGAG 59.417 55.000 0.00 0.00 0.00 3.35
2919 2964 0.176910 TCTGCACGGACACAAACAGA 59.823 50.000 0.00 0.00 0.00 3.41
2920 2965 0.304705 GTCTGCACGGACACAAACAG 59.695 55.000 4.72 0.00 36.35 3.16
2921 2966 0.391793 TGTCTGCACGGACACAAACA 60.392 50.000 8.22 0.00 40.72 2.83
2922 2967 0.730265 TTGTCTGCACGGACACAAAC 59.270 50.000 11.78 0.00 44.55 2.93
2923 2968 1.454201 TTTGTCTGCACGGACACAAA 58.546 45.000 11.78 2.54 44.55 2.83
2924 2969 1.454201 TTTTGTCTGCACGGACACAA 58.546 45.000 11.78 9.21 44.55 3.33
2925 2970 1.454201 TTTTTGTCTGCACGGACACA 58.546 45.000 11.78 3.07 44.55 3.72
2926 2971 2.774439 ATTTTTGTCTGCACGGACAC 57.226 45.000 11.78 0.00 44.55 3.67
2927 2972 4.793071 CAATATTTTTGTCTGCACGGACA 58.207 39.130 8.22 8.22 43.41 4.02
2928 2973 3.608073 GCAATATTTTTGTCTGCACGGAC 59.392 43.478 2.53 2.53 36.81 4.79
2929 2974 3.366883 GGCAATATTTTTGTCTGCACGGA 60.367 43.478 0.00 0.00 34.66 4.69
2930 2975 2.923020 GGCAATATTTTTGTCTGCACGG 59.077 45.455 0.00 0.00 34.66 4.94
2931 2976 2.923020 GGGCAATATTTTTGTCTGCACG 59.077 45.455 0.00 0.00 34.66 5.34
2932 2977 3.924144 TGGGCAATATTTTTGTCTGCAC 58.076 40.909 0.00 0.00 36.94 4.57
2933 2978 4.314121 GTTGGGCAATATTTTTGTCTGCA 58.686 39.130 0.00 0.00 34.66 4.41
2934 2979 3.367630 CGTTGGGCAATATTTTTGTCTGC 59.632 43.478 0.00 0.00 0.00 4.26
2935 2980 4.555262 ACGTTGGGCAATATTTTTGTCTG 58.445 39.130 0.00 0.00 0.00 3.51
2936 2981 4.864704 ACGTTGGGCAATATTTTTGTCT 57.135 36.364 0.00 0.00 0.00 3.41
2937 2982 5.798434 GTCTACGTTGGGCAATATTTTTGTC 59.202 40.000 0.00 0.00 0.00 3.18
2938 2983 5.241949 TGTCTACGTTGGGCAATATTTTTGT 59.758 36.000 0.00 0.00 0.00 2.83
2939 2984 5.704888 TGTCTACGTTGGGCAATATTTTTG 58.295 37.500 0.00 0.00 0.00 2.44
2940 2985 5.968528 TGTCTACGTTGGGCAATATTTTT 57.031 34.783 0.00 0.00 0.00 1.94
2941 2986 7.817418 ATATGTCTACGTTGGGCAATATTTT 57.183 32.000 0.00 0.00 0.00 1.82
2942 2987 7.719633 AGAATATGTCTACGTTGGGCAATATTT 59.280 33.333 0.00 0.00 33.56 1.40
2943 2988 7.224297 AGAATATGTCTACGTTGGGCAATATT 58.776 34.615 0.00 0.75 33.56 1.28
2988 3033 3.631250 ACATAAATGGGTCCGAGCAAAT 58.369 40.909 0.00 0.00 0.00 2.32
3034 3079 1.679139 CTGGTTTGTGTCCAGCTTCA 58.321 50.000 0.00 0.00 44.46 3.02
3036 3081 5.533769 AACCTCTGGTTTGTGTCCAGCTT 62.534 47.826 7.05 0.00 44.33 3.74
3068 3115 5.004922 AGAGAGAGAAAAGGTTATGCGAG 57.995 43.478 0.00 0.00 0.00 5.03
3083 3130 4.751098 GCATGGCAGATAGAAAAGAGAGAG 59.249 45.833 0.00 0.00 0.00 3.20
3194 3251 1.972660 CTTAAGGCGAGGGGGTGAGG 61.973 65.000 0.00 0.00 0.00 3.86
3198 3255 3.408853 GGCTTAAGGCGAGGGGGT 61.409 66.667 13.85 0.00 42.94 4.95
3217 3274 4.783621 GACATGGCAGGGCGAGCA 62.784 66.667 3.46 0.00 0.00 4.26
3240 3297 3.531920 GACGAGGCACGACACGACA 62.532 63.158 12.15 0.00 45.77 4.35
3389 3446 3.426568 GAGACCGGCAGCAGCAAC 61.427 66.667 0.00 0.00 44.61 4.17
3434 3491 2.029844 GCAGCACTGGAAGGTCGTC 61.030 63.158 0.00 0.00 39.30 4.20


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.