AutoCloner

Multiple sequence alignment - TraesCS2B01G531400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS2B01G531400	chr2B	100.000	3003	0	0	1	3003	727084251	727087253	0.000000e+00	5546.0
1	TraesCS2B01G531400	chr2B	97.208	1397	35	4	655	2048	727206452	727205057	0.000000e+00	2361.0
2	TraesCS2B01G531400	chr2B	78.383	1064	186	22	957	2008	709784373	709783342	0.000000e+00	651.0
3	TraesCS2B01G531400	chr2B	85.938	64	9	0	1111	1174	101073273	101073336	5.370000e-08	69.4
4	TraesCS2B01G531400	chr2A	95.460	2621	92	8	1	2615	732598718	732601317	0.000000e+00	4156.0
5	TraesCS2B01G531400	chr2A	97.124	1391	37	3	655	2043	732853335	732851946	0.000000e+00	2344.0
6	TraesCS2B01G531400	chr2A	77.810	1023	184	22	998	2008	722072238	722071247	2.580000e-165	592.0
7	TraesCS2B01G531400	chr2A	94.509	346	16	3	2659	3003	732601317	732601660	5.700000e-147	531.0
8	TraesCS2B01G531400	chr1B	80.245	1387	211	40	654	2013	656422867	656421517	0.000000e+00	985.0
9	TraesCS2B01G531400	chr1B	87.387	111	12	2	2120	2229	150801972	150801863	3.140000e-25	126.0
10	TraesCS2B01G531400	chr1B	85.000	80	10	2	172	249	354245184	354245263	2.480000e-11	80.5
11	TraesCS2B01G531400	chr2D	80.632	475	80	7	948	1411	587257903	587257430	1.020000e-94	357.0
12	TraesCS2B01G531400	chr2D	77.742	620	108	13	1398	2013	587242009	587241416	1.320000e-93	353.0
13	TraesCS2B01G531400	chr2D	88.462	104	12	0	2119	2222	98693500	98693603	3.140000e-25	126.0
14	TraesCS2B01G531400	chr2D	83.908	87	14	0	172	258	645993019	645993105	1.920000e-12	84.2
15	TraesCS2B01G531400	chr2D	77.966	118	24	2	1058	1174	64732666	64732782	4.150000e-09	73.1
16	TraesCS2B01G531400	chr7B	79.125	297	47	10	2719	3003	75788804	75789097	1.100000e-44	191.0
17	TraesCS2B01G531400	chr7B	86.517	89	10	2	170	257	694761594	694761507	2.460000e-16	97.1
18	TraesCS2B01G531400	chr5A	92.473	93	7	0	2119	2211	277841042	277841134	1.880000e-27	134.0
19	TraesCS2B01G531400	chr5A	77.451	204	43	3	2719	2921	546358892	546358691	5.260000e-23	119.0
20	TraesCS2B01G531400	chr3D	88.991	109	11	1	2120	2227	135381019	135381127	1.880000e-27	134.0
21	TraesCS2B01G531400	chr3D	75.254	295	61	8	2719	3003	153508642	153508934	2.430000e-26	130.0
22	TraesCS2B01G531400	chr3D	87.963	108	12	1	2115	2222	131009528	131009422	3.140000e-25	126.0
23	TraesCS2B01G531400	chr3D	84.946	93	13	1	1	92	277217718	277217810	3.190000e-15	93.5
24	TraesCS2B01G531400	chr6A	89.109	101	11	0	2117	2217	16618129	16618029	3.140000e-25	126.0
25	TraesCS2B01G531400	chr1D	89.109	101	11	0	2117	2217	485718755	485718655	3.140000e-25	126.0
26	TraesCS2B01G531400	chr4A	86.239	109	15	0	2120	2228	703218659	703218551	5.260000e-23	119.0
27	TraesCS2B01G531400	chr4A	84.615	91	10	2	1	87	631622270	631622180	1.480000e-13	87.9
28	TraesCS2B01G531400	chr4A	86.585	82	8	3	170	249	735205109	735205189	1.480000e-13	87.9
29	TraesCS2B01G531400	chr3B	75.877	228	42	8	2786	3003	225175868	225176092	1.470000e-18	104.0
30	TraesCS2B01G531400	chr3B	86.585	82	10	1	179	260	8639282	8639202	4.120000e-14	89.8
31	TraesCS2B01G531400	chr5D	75.115	217	49	3	2719	2931	120897791	120898006	2.460000e-16	97.1
32	TraesCS2B01G531400	chr5D	83.696	92	11	4	170	258	332788112	332788022	1.920000e-12	84.2
33	TraesCS2B01G531400	chr4B	84.884	86	12	1	170	255	416270399	416270483	5.330000e-13	86.1
34	TraesCS2B01G531400	chr4B	92.000	50	4	0	2839	2888	553536287	553536238	1.490000e-08	71.3
35	TraesCS2B01G531400	chr3A	84.706	85	13	0	174	258	71064197	71064113	5.330000e-13	86.1

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS2B01G531400	chr2B	727084251	727087253	3002	False	5546.0	5546	100.0000	1	3003	1	chr2B.!!$F2	3002
1	TraesCS2B01G531400	chr2B	727205057	727206452	1395	True	2361.0	2361	97.2080	655	2048	1	chr2B.!!$R2	1393
2	TraesCS2B01G531400	chr2B	709783342	709784373	1031	True	651.0	651	78.3830	957	2008	1	chr2B.!!$R1	1051
3	TraesCS2B01G531400	chr2A	732851946	732853335	1389	True	2344.0	2344	97.1240	655	2043	1	chr2A.!!$R2	1388
4	TraesCS2B01G531400	chr2A	732598718	732601660	2942	False	2343.5	4156	94.9845	1	3003	2	chr2A.!!$F1	3002
5	TraesCS2B01G531400	chr2A	722071247	722072238	991	True	592.0	592	77.8100	998	2008	1	chr2A.!!$R1	1010
6	TraesCS2B01G531400	chr1B	656421517	656422867	1350	True	985.0	985	80.2450	654	2013	1	chr1B.!!$R2	1359
7	TraesCS2B01G531400	chr2D	587241416	587242009	593	True	353.0	353	77.7420	1398	2013	1	chr2D.!!$R1	615

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
637	642	0.602905	GCCGAACCCATATCTTCCGG	60.603	60.0	0.0	0.0	38.58	5.14	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2626	2659	0.02877	CAGCCGTTTTTGCGACTTCA	59.971	50.0	0.0	0.0	0.0	3.02	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
34	35	1.078759	GACCGCATCTCCACTTGACG	61.079	60.000	0.00	0.00	0.00	4.35
54	55	2.281484	TCTTGAACCCGCCACTGC	60.281	61.111	0.00	0.00	0.00	4.40
97	98	0.669318	CGTGGTTGCCTATGTGACGT	60.669	55.000	0.00	0.00	0.00	4.34
110	111	0.796312	GTGACGTGGTTGCCTATGTG	59.204	55.000	0.00	0.00	0.00	3.21
168	169	2.348620	GTTTAGGGTCCGGCCGTT	59.651	61.111	26.12	6.49	38.44	4.44
236	237	6.264832	TCATATGAAAATCCATCGTGTTTGC	58.735	36.000	1.98	0.00	0.00	3.68
249	250	3.249799	TCGTGTTTGCATGAATTTCGTCT	59.750	39.130	0.00	0.00	37.67	4.18
255	256	5.697473	TTGCATGAATTTCGTCTGGTTAA	57.303	34.783	0.00	0.00	0.00	2.01
271	272	5.021120	TGGTTAATTGAGCGAACGTTTAC	57.979	39.130	0.46	0.00	0.00	2.01
304	305	1.093159	CAAGTCAGCCTTGGAGATGC	58.907	55.000	0.00	0.00	45.70	3.91
321	322	7.000472	TGGAGATGCCCAAAATAGAGATAAAG	59.000	38.462	0.00	0.00	34.97	1.85
513	518	4.631813	CCTAAGTTCCAATCTGGTCGAAAG	59.368	45.833	0.00	0.00	39.03	2.62
526	531	2.350804	GGTCGAAAGAAAATAGCCGGAC	59.649	50.000	5.05	0.00	45.01	4.79
544	549	1.999051	CGAAGAATCGCCGGAAGTG	59.001	57.895	5.05	0.00	42.96	3.16
637	642	0.602905	GCCGAACCCATATCTTCCGG	60.603	60.000	0.00	0.00	38.58	5.14
732	737	1.946745	CGCTGAGGAAGAGGATTTCC	58.053	55.000	0.00	0.00	45.71	3.13
1174	1189	3.616821	CGATAACAATCGCAACCTTCTCA	59.383	43.478	0.00	0.00	37.24	3.27
1177	1192	3.057969	ACAATCGCAACCTTCTCATCA	57.942	42.857	0.00	0.00	0.00	3.07
1463	1490	1.131883	GAGCATTGATCAGCGCAACTT	59.868	47.619	11.47	0.00	35.48	2.66
2022	2054	3.181445	TGAAACCTCCAAGCACTACACAT	60.181	43.478	0.00	0.00	0.00	3.21
2074	2106	1.604604	CGGACAAGACCAACCAACAT	58.395	50.000	0.00	0.00	0.00	2.71
2090	2122	3.529533	CAACATTGTTGGAAGTTTGCCA	58.470	40.909	19.66	0.00	0.00	4.92
2109	2141	2.158755	CCAAGGGCATCTTATCGGAAGT	60.159	50.000	0.00	0.00	33.68	3.01
2125	2157	5.839621	TCGGAAGTTTGGCTATATACTCAC	58.160	41.667	0.00	0.00	0.00	3.51
2126	2158	5.597182	TCGGAAGTTTGGCTATATACTCACT	59.403	40.000	0.00	0.00	0.00	3.41
2132	2164	3.418995	TGGCTATATACTCACTCCGTCC	58.581	50.000	0.00	0.00	0.00	4.79
2141	2173	3.939066	ACTCACTCCGTCCCAAAATAAG	58.061	45.455	0.00	0.00	0.00	1.73
2154	2186	6.918022	GTCCCAAAATAAGTGTCTCAACTTTG	59.082	38.462	0.00	0.00	40.77	2.77
2163	2195	9.694137	ATAAGTGTCTCAACTTTGTACTAACTC	57.306	33.333	0.00	0.00	40.77	3.01
2164	2196	7.349412	AGTGTCTCAACTTTGTACTAACTCT	57.651	36.000	0.00	0.00	0.00	3.24
2165	2197	8.461249	AGTGTCTCAACTTTGTACTAACTCTA	57.539	34.615	0.00	0.00	0.00	2.43
2166	2198	8.910944	AGTGTCTCAACTTTGTACTAACTCTAA	58.089	33.333	0.00	0.00	0.00	2.10
2211	2243	5.385198	AGGCACTTATTTTGAGACAAAGGA	58.615	37.500	0.00	0.00	27.25	3.36
2325	2357	2.030701	TGTTGTGCGACGGACTTTTAAC	59.969	45.455	20.39	15.52	0.00	2.01
2393	2425	7.990886	TGTCACTCAACTTTTTATTCTGGTAGT	59.009	33.333	0.00	0.00	0.00	2.73
2476	2508	3.999663	CAGAAAGATTCGAGACTTGCCTT	59.000	43.478	6.88	0.00	34.02	4.35
2517	2550	5.515090	TTCCATACGCCTCCTGGAAAAGG	62.515	52.174	0.00	0.00	44.06	3.11
2525	2558	2.757077	CTGGAAAAGGAGGCGGGT	59.243	61.111	0.00	0.00	0.00	5.28
2529	2562	0.675837	GGAAAAGGAGGCGGGTACAC	60.676	60.000	0.00	0.00	0.00	2.90
2533	2566	1.956629	AAGGAGGCGGGTACACATCG	61.957	60.000	0.00	0.00	0.00	3.84
2534	2567	2.106332	GAGGCGGGTACACATCGG	59.894	66.667	0.00	0.00	0.00	4.18
2556	2589	7.952339	TCGGAACATAGTTCGTAATACAAAAC	58.048	34.615	4.05	0.00	0.00	2.43
2562	2595	9.701098	ACATAGTTCGTAATACAAAACTTCTCA	57.299	29.630	11.70	0.00	34.09	3.27
2622	2655	2.600164	TGGCACAGCAGGGTGAAA	59.400	55.556	5.37	0.00	41.32	2.69
2623	2656	1.076412	TGGCACAGCAGGGTGAAAA	60.076	52.632	5.37	0.00	41.32	2.29
2624	2657	1.108727	TGGCACAGCAGGGTGAAAAG	61.109	55.000	5.37	0.00	41.32	2.27
2625	2658	0.823356	GGCACAGCAGGGTGAAAAGA	60.823	55.000	5.37	0.00	41.32	2.52
2626	2659	1.251251	GCACAGCAGGGTGAAAAGAT	58.749	50.000	5.37	0.00	41.32	2.40
2627	2660	1.068055	GCACAGCAGGGTGAAAAGATG	60.068	52.381	5.37	0.00	41.32	2.90
2628	2661	2.507484	CACAGCAGGGTGAAAAGATGA	58.493	47.619	5.37	0.00	41.32	2.92
2629	2662	2.886523	CACAGCAGGGTGAAAAGATGAA	59.113	45.455	5.37	0.00	41.32	2.57
2630	2663	3.057736	CACAGCAGGGTGAAAAGATGAAG	60.058	47.826	5.37	0.00	41.32	3.02
2631	2664	3.152341	CAGCAGGGTGAAAAGATGAAGT	58.848	45.455	0.00	0.00	0.00	3.01
2632	2665	3.190118	CAGCAGGGTGAAAAGATGAAGTC	59.810	47.826	0.00	0.00	0.00	3.01
2633	2666	2.160417	GCAGGGTGAAAAGATGAAGTCG	59.840	50.000	0.00	0.00	0.00	4.18
2634	2667	2.160417	CAGGGTGAAAAGATGAAGTCGC	59.840	50.000	0.00	0.00	0.00	5.19
2635	2668	2.151202	GGGTGAAAAGATGAAGTCGCA	58.849	47.619	0.00	0.00	0.00	5.10
2636	2669	2.552315	GGGTGAAAAGATGAAGTCGCAA	59.448	45.455	0.00	0.00	0.00	4.85
2637	2670	3.004315	GGGTGAAAAGATGAAGTCGCAAA	59.996	43.478	0.00	0.00	0.00	3.68
2638	2671	4.499019	GGGTGAAAAGATGAAGTCGCAAAA	60.499	41.667	0.00	0.00	0.00	2.44
2639	2672	5.040635	GGTGAAAAGATGAAGTCGCAAAAA	58.959	37.500	0.00	0.00	0.00	1.94
2640	2673	5.051708	GGTGAAAAGATGAAGTCGCAAAAAC	60.052	40.000	0.00	0.00	0.00	2.43
2641	2674	4.732923	TGAAAAGATGAAGTCGCAAAAACG	59.267	37.500	0.00	0.00	0.00	3.60
2642	2675	2.969443	AGATGAAGTCGCAAAAACGG	57.031	45.000	0.00	0.00	0.00	4.44
2643	2676	1.069227	AGATGAAGTCGCAAAAACGGC	60.069	47.619	0.00	0.00	38.12	5.68
2647	2680	2.331451	GTCGCAAAAACGGCTGCT	59.669	55.556	0.00	0.00	36.38	4.24
2648	2681	2.010817	GTCGCAAAAACGGCTGCTG	61.011	57.895	6.98	6.98	36.38	4.41
2649	2682	2.183504	TCGCAAAAACGGCTGCTGA	61.184	52.632	16.72	0.00	36.38	4.26
2650	2683	2.010817	CGCAAAAACGGCTGCTGAC	61.011	57.895	16.72	0.00	36.38	3.51
2657	2690	2.664851	CGGCTGCTGACGGAAACA	60.665	61.111	11.57	0.00	41.86	2.83
2658	2691	2.250939	CGGCTGCTGACGGAAACAA	61.251	57.895	11.57	0.00	41.86	2.83
2725	2759	2.822399	AGGGCGCCCTAAAGATCG	59.178	61.111	46.67	0.00	46.14	3.69
2760	2794	4.818546	AGCCGTCCAATCTGATGAATTAAG	59.181	41.667	0.00	0.00	0.00	1.85
2784	2818	9.469097	AAGCGATTGAGGATTATCTACTACTAT	57.531	33.333	0.00	0.00	0.00	2.12
2889	2923	8.644619	CAGATTATTTTTGCAACAGATGTCTTG	58.355	33.333	0.00	0.00	0.00	3.02
2890	2924	6.768029	TTATTTTTGCAACAGATGTCTTGC	57.232	33.333	0.00	3.25	40.55	4.01

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
54	55	3.403968	CTTCATCTGCCATCTCCATGAG	58.596	50.000	0.00	0.00	30.57	2.90
97	98	4.308526	TTGTATTCCACATAGGCAACCA	57.691	40.909	0.00	0.00	36.90	3.67
110	111	2.100197	GGCCCACTTCCTTTGTATTCC	58.900	52.381	0.00	0.00	0.00	3.01
226	227	4.083324	AGACGAAATTCATGCAAACACGAT	60.083	37.500	0.00	0.00	0.00	3.73
236	237	6.470235	GCTCAATTAACCAGACGAAATTCATG	59.530	38.462	0.00	0.00	0.00	3.07
249	250	4.376210	CGTAAACGTTCGCTCAATTAACCA	60.376	41.667	0.00	0.00	34.11	3.67
255	256	2.915463	CTCTCGTAAACGTTCGCTCAAT	59.085	45.455	0.00	0.00	40.80	2.57
286	287	0.034670	GGCATCTCCAAGGCTGACTT	60.035	55.000	0.00	0.00	41.00	3.01
288	289	1.452833	GGGCATCTCCAAGGCTGAC	60.453	63.158	0.00	0.00	36.21	3.51
330	335	6.724893	TGGAGAATAATACAATCTCGACCA	57.275	37.500	0.00	0.00	40.37	4.02
349	354	0.526954	GTACCGTACGTGCCATGGAG	60.527	60.000	18.40	8.42	0.00	3.86
414	419	1.490910	AGCCTTATAACCAGCCCTGTC	59.509	52.381	0.00	0.00	0.00	3.51
473	478	1.625511	AGGGTTTCTACCGAAGACGT	58.374	50.000	0.00	0.00	46.04	4.34
513	518	3.060473	CGATTCTTCGTCCGGCTATTTTC	60.060	47.826	0.00	0.00	40.53	2.29
544	549	2.024871	CGTCCTCGATGCTCGTCC	59.975	66.667	5.66	0.00	41.35	4.79
570	575	5.258456	TCGATAGTTATCTGCTTCCGTTT	57.742	39.130	0.00	0.00	37.40	3.60
637	642	2.548057	TCGTCAACAACTTCCAATCTGC	59.452	45.455	0.00	0.00	0.00	4.26
732	737	0.393537	CAGGCCCTTCTGTAGCAAGG	60.394	60.000	0.00	0.00	40.33	3.61
988	1003	3.691118	GTGAAGTGCATGGAGCTCAATTA	59.309	43.478	17.19	0.00	45.94	1.40
1174	1189	2.798499	GCGTTATCCTACTGTGCGTGAT	60.798	50.000	0.00	0.00	0.00	3.06
1177	1192	0.179119	GGCGTTATCCTACTGTGCGT	60.179	55.000	0.00	0.00	0.00	5.24
2074	2106	1.484240	CCCTTGGCAAACTTCCAACAA	59.516	47.619	0.00	0.00	38.57	2.83
2090	2122	3.933861	AACTTCCGATAAGATGCCCTT	57.066	42.857	4.72	0.00	38.87	3.95
2098	2130	8.304596	TGAGTATATAGCCAAACTTCCGATAAG	58.695	37.037	0.00	0.00	0.00	1.73
2125	2157	3.933332	GAGACACTTATTTTGGGACGGAG	59.067	47.826	0.00	0.00	0.00	4.63
2126	2158	3.325425	TGAGACACTTATTTTGGGACGGA	59.675	43.478	0.00	0.00	0.00	4.69
2132	2164	8.621286	AGTACAAAGTTGAGACACTTATTTTGG	58.379	33.333	0.00	0.00	35.87	3.28
2141	2173	9.694137	ATTAGAGTTAGTACAAAGTTGAGACAC	57.306	33.333	0.00	0.00	0.00	3.67
2154	2186	9.420551	AGCACAACTTTACATTAGAGTTAGTAC	57.579	33.333	0.00	0.00	32.69	2.73
2163	2195	7.667043	TGACCTTAGCACAACTTTACATTAG	57.333	36.000	0.00	0.00	0.00	1.73
2164	2196	7.174253	CCTTGACCTTAGCACAACTTTACATTA	59.826	37.037	0.00	0.00	0.00	1.90
2165	2197	6.016276	CCTTGACCTTAGCACAACTTTACATT	60.016	38.462	0.00	0.00	0.00	2.71
2166	2198	5.473504	CCTTGACCTTAGCACAACTTTACAT	59.526	40.000	0.00	0.00	0.00	2.29
2173	2205	1.604604	TGCCTTGACCTTAGCACAAC	58.395	50.000	0.00	0.00	0.00	3.32
2178	2210	5.183140	TCAAAATAAGTGCCTTGACCTTAGC	59.817	40.000	0.00	0.00	0.00	3.09
2211	2243	9.647797	TCGAATCACACAACATAAGTTATACTT	57.352	29.630	0.00	0.00	41.97	2.24
2264	2296	6.436532	CGGATAACATAGGAGTTATACAGGGT	59.563	42.308	9.10	0.00	42.77	4.34
2325	2357	4.482386	CATGCACAAAATCAGACTCCAAG	58.518	43.478	0.00	0.00	0.00	3.61
2418	2450	4.563140	ATTTCCCGTGTGGTTACAGTAT	57.437	40.909	0.00	0.00	37.52	2.12
2497	2530	1.668419	CTTTTCCAGGAGGCGTATGG	58.332	55.000	4.17	4.17	35.30	2.74
2517	2550	1.952102	TTCCGATGTGTACCCGCCTC	61.952	60.000	0.00	0.00	0.00	4.70
2525	2558	4.707030	ACGAACTATGTTCCGATGTGTA	57.293	40.909	5.06	0.00	0.00	2.90
2529	2562	7.688478	TTGTATTACGAACTATGTTCCGATG	57.312	36.000	5.06	0.00	0.00	3.84
2533	2566	9.750882	GAAGTTTTGTATTACGAACTATGTTCC	57.249	33.333	12.83	0.00	30.40	3.62
2615	2648	2.151202	TGCGACTTCATCTTTTCACCC	58.849	47.619	0.00	0.00	0.00	4.61
2616	2649	3.896648	TTGCGACTTCATCTTTTCACC	57.103	42.857	0.00	0.00	0.00	4.02
2617	2650	5.330792	CGTTTTTGCGACTTCATCTTTTCAC	60.331	40.000	0.00	0.00	0.00	3.18
2618	2651	4.732923	CGTTTTTGCGACTTCATCTTTTCA	59.267	37.500	0.00	0.00	0.00	2.69
2619	2652	4.146443	CCGTTTTTGCGACTTCATCTTTTC	59.854	41.667	0.00	0.00	0.00	2.29
2620	2653	4.041723	CCGTTTTTGCGACTTCATCTTTT	58.958	39.130	0.00	0.00	0.00	2.27
2621	2654	3.628017	CCGTTTTTGCGACTTCATCTTT	58.372	40.909	0.00	0.00	0.00	2.52
2622	2655	2.604614	GCCGTTTTTGCGACTTCATCTT	60.605	45.455	0.00	0.00	0.00	2.40
2623	2656	1.069227	GCCGTTTTTGCGACTTCATCT	60.069	47.619	0.00	0.00	0.00	2.90
2624	2657	1.069227	AGCCGTTTTTGCGACTTCATC	60.069	47.619	0.00	0.00	0.00	2.92
2625	2658	0.951558	AGCCGTTTTTGCGACTTCAT	59.048	45.000	0.00	0.00	0.00	2.57
2626	2659	0.028770	CAGCCGTTTTTGCGACTTCA	59.971	50.000	0.00	0.00	0.00	3.02
2627	2660	1.268778	GCAGCCGTTTTTGCGACTTC	61.269	55.000	0.00	0.00	0.00	3.01
2628	2661	1.299089	GCAGCCGTTTTTGCGACTT	60.299	52.632	0.00	0.00	0.00	3.01
2629	2662	2.186826	AGCAGCCGTTTTTGCGACT	61.187	52.632	0.00	0.00	44.80	4.18
2630	2663	2.010817	CAGCAGCCGTTTTTGCGAC	61.011	57.895	0.00	0.00	44.80	5.19
2631	2664	2.183504	TCAGCAGCCGTTTTTGCGA	61.184	52.632	0.00	0.00	44.80	5.10
2632	2665	2.010817	GTCAGCAGCCGTTTTTGCG	61.011	57.895	0.00	0.00	44.80	4.85
2633	2666	2.010817	CGTCAGCAGCCGTTTTTGC	61.011	57.895	0.00	0.00	40.57	3.68
2634	2667	1.370414	CCGTCAGCAGCCGTTTTTG	60.370	57.895	0.00	0.00	0.00	2.44
2635	2668	1.098712	TTCCGTCAGCAGCCGTTTTT	61.099	50.000	0.00	0.00	0.00	1.94
2636	2669	1.098712	TTTCCGTCAGCAGCCGTTTT	61.099	50.000	0.00	0.00	0.00	2.43
2637	2670	1.525077	TTTCCGTCAGCAGCCGTTT	60.525	52.632	0.00	0.00	0.00	3.60
2638	2671	2.110213	TTTCCGTCAGCAGCCGTT	59.890	55.556	0.00	0.00	0.00	4.44
2639	2672	2.665185	GTTTCCGTCAGCAGCCGT	60.665	61.111	0.00	0.00	0.00	5.68
2640	2673	2.250939	TTGTTTCCGTCAGCAGCCG	61.251	57.895	0.00	0.00	0.00	5.52
2641	2674	1.282875	GTTGTTTCCGTCAGCAGCC	59.717	57.895	0.00	0.00	0.00	4.85
2642	2675	1.082756	CGTTGTTTCCGTCAGCAGC	60.083	57.895	0.00	0.00	0.00	5.25
2643	2676	0.042188	CACGTTGTTTCCGTCAGCAG	60.042	55.000	0.00	0.00	36.17	4.24
2644	2677	2.010670	CACGTTGTTTCCGTCAGCA	58.989	52.632	0.00	0.00	36.17	4.41
2645	2678	1.368850	GCACGTTGTTTCCGTCAGC	60.369	57.895	0.00	0.00	36.17	4.26
2646	2679	0.042188	CTGCACGTTGTTTCCGTCAG	60.042	55.000	0.00	0.00	36.17	3.51
2647	2680	0.460459	TCTGCACGTTGTTTCCGTCA	60.460	50.000	0.00	0.00	36.17	4.35
2648	2681	0.653636	TTCTGCACGTTGTTTCCGTC	59.346	50.000	0.00	0.00	36.17	4.79
2649	2682	1.002900	CATTCTGCACGTTGTTTCCGT	60.003	47.619	0.00	0.00	39.52	4.69
2650	2683	1.673760	CATTCTGCACGTTGTTTCCG	58.326	50.000	0.00	0.00	0.00	4.30
2651	2684	1.408422	GCATTCTGCACGTTGTTTCC	58.592	50.000	0.00	0.00	44.26	3.13
2740	2774	4.507756	TCGCTTAATTCATCAGATTGGACG	59.492	41.667	0.00	0.00	0.00	4.79
2760	2794	9.509855	CAATAGTAGTAGATAATCCTCAATCGC	57.490	37.037	0.00	0.00	0.00	4.58
2784	2818	1.536496	GCAACTCAACATGTGCTGCAA	60.536	47.619	2.77	0.00	31.21	4.08
2789	2823	2.780065	TTCTGCAACTCAACATGTGC	57.220	45.000	0.00	0.00	0.00	4.57
2849	2883	9.076596	CAAAAATAATCTGCAACTTAACCTAGC	57.923	33.333	0.00	0.00	0.00	3.42

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.