AutoCloner

Multiple sequence alignment - TraesCS2B01G530800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS2B01G530800	chr2B	100.000	2170	0	0	1	2170	726134795	726136964	0.000000e+00	4008.0
1	TraesCS2B01G530800	chr2B	100.000	463	0	0	2398	2860	726137192	726137654	0.000000e+00	856.0
2	TraesCS2B01G530800	chr2B	82.500	600	65	21	1052	1616	726545793	726546387	9.210000e-135	490.0
3	TraesCS2B01G530800	chr2A	92.337	1827	96	16	336	2156	731378716	731380504	0.000000e+00	2558.0
4	TraesCS2B01G530800	chr2A	87.133	443	43	5	2431	2859	731380769	731381211	9.210000e-135	490.0
5	TraesCS2B01G530800	chr2A	91.496	341	25	1	1	341	731378197	731378533	1.550000e-127	466.0
6	TraesCS2B01G530800	chr2A	81.345	595	76	21	1052	1616	732580319	732580908	4.350000e-123	451.0
7	TraesCS2B01G530800	chr2A	81.627	332	44	9	2545	2860	651908793	651908463	2.830000e-65	259.0
8	TraesCS2B01G530800	chr2A	95.294	85	2	2	2776	2859	189206820	189206737	1.790000e-27	134.0
9	TraesCS2B01G530800	chr2D	91.773	1653	114	16	517	2169	597321987	597323617	0.000000e+00	2279.0
10	TraesCS2B01G530800	chr2D	89.397	547	49	4	1493	2039	597323826	597324363	0.000000e+00	680.0
11	TraesCS2B01G530800	chr2D	81.659	687	74	25	974	1616	598712605	598713283	9.080000e-145	523.0
12	TraesCS2B01G530800	chr2D	86.581	313	29	5	2556	2855	383842865	383842553	1.640000e-87	333.0
13	TraesCS2B01G530800	chr3D	85.669	314	28	11	2562	2860	228161539	228161228	5.950000e-82	315.0
14	TraesCS2B01G530800	chr3D	85.174	317	33	7	2556	2858	65229305	65228989	2.140000e-81	313.0
15	TraesCS2B01G530800	chr3D	86.977	215	26	2	2552	2764	497954534	497954320	1.020000e-59	241.0
16	TraesCS2B01G530800	chr4D	83.912	317	34	5	2556	2859	342468202	342467890	1.300000e-73	287.0
17	TraesCS2B01G530800	chr6D	83.025	324	42	5	2550	2860	394088883	394089206	6.030000e-72	281.0
18	TraesCS2B01G530800	chr6D	87.097	124	11	4	1245	1367	443741154	443741035	4.970000e-28	135.0
19	TraesCS2B01G530800	chr6D	97.468	79	1	1	2782	2859	202743254	202743176	1.790000e-27	134.0
20	TraesCS2B01G530800	chr6D	87.179	78	10	0	1060	1137	443741341	443741264	3.920000e-14	89.8
21	TraesCS2B01G530800	chr5B	83.648	318	31	13	2562	2859	65548501	65548817	2.170000e-71	279.0
22	TraesCS2B01G530800	chr4B	83.387	313	36	5	2556	2854	424598992	424598682	2.810000e-70	276.0
23	TraesCS2B01G530800	chr6A	81.308	321	35	11	2556	2853	131240903	131240585	1.320000e-58	237.0
24	TraesCS2B01G530800	chr6A	86.441	118	11	4	1251	1367	591381010	591380897	1.080000e-24	124.0
25	TraesCS2B01G530800	chr6A	88.462	78	9	0	1060	1137	591381188	591381111	8.440000e-16	95.3
26	TraesCS2B01G530800	chr3B	85.849	212	29	1	2560	2771	663029853	663029643	1.030000e-54	224.0
27	TraesCS2B01G530800	chr1A	79.805	307	42	11	2560	2860	485020193	485019901	3.740000e-49	206.0
28	TraesCS2B01G530800	chr1A	83.495	206	27	6	2560	2761	104233306	104233104	4.870000e-43	185.0
29	TraesCS2B01G530800	chr5A	84.466	206	25	5	2560	2761	318457742	318457540	2.250000e-46	196.0
30	TraesCS2B01G530800	chr6B	87.097	124	11	4	1245	1367	668029842	668029723	4.970000e-28	135.0
31	TraesCS2B01G530800	chr6B	88.462	78	9	0	1060	1137	668030008	668029931	8.440000e-16	95.3
32	TraesCS2B01G530800	chr7D	88.462	78	9	0	1061	1138	93949373	93949296	8.440000e-16	95.3
33	TraesCS2B01G530800	chr7D	88.462	78	9	0	1061	1138	94005562	94005639	8.440000e-16	95.3
34	TraesCS2B01G530800	chr7B	88.462	78	9	0	1061	1138	47737279	47737356	8.440000e-16	95.3

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS2B01G530800	chr2B	726134795	726137654	2859	False	2432.000000	4008	100.000	1	2860	2	chr2B.!!$F2	2859
1	TraesCS2B01G530800	chr2B	726545793	726546387	594	False	490.000000	490	82.500	1052	1616	1	chr2B.!!$F1	564
2	TraesCS2B01G530800	chr2A	731378197	731381211	3014	False	1171.333333	2558	90.322	1	2859	3	chr2A.!!$F2	2858
3	TraesCS2B01G530800	chr2A	732580319	732580908	589	False	451.000000	451	81.345	1052	1616	1	chr2A.!!$F1	564
4	TraesCS2B01G530800	chr2D	597321987	597324363	2376	False	1479.500000	2279	90.585	517	2169	2	chr2D.!!$F2	1652
5	TraesCS2B01G530800	chr2D	598712605	598713283	678	False	523.000000	523	81.659	974	1616	1	chr2D.!!$F1	642

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
632	821	0.107214	CTGGGTAACATGGCCGTCAT	60.107	55.0	0.0	0.0	36.31	3.06	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2472	2709	0.035152	AACCATCGCATGCAGAAGGA	60.035	50.0	28.05	15.29	31.53	3.36	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
29	30	4.168291	GAGCGCCAAGAGGAGGGG	62.168	72.222	2.29	0.00	41.62	4.79
38	39	2.482494	CAAGAGGAGGGGGACATACTT	58.518	52.381	0.00	0.00	33.59	2.24
46	47	0.680061	GGGGACATACTTAGAGGCGG	59.320	60.000	0.00	0.00	0.00	6.13
99	100	3.896888	TCCCTGTTGAATCACTGCAAAAT	59.103	39.130	0.00	0.00	0.00	1.82
131	132	2.322081	CGACGGGGTGCGTCAAATT	61.322	57.895	0.00	0.00	36.28	1.82
144	145	0.108963	TCAAATTCGACAACGGGGGT	59.891	50.000	0.00	0.00	40.21	4.95
174	175	2.643551	AGATCCGTTGATTTTGGCGAT	58.356	42.857	0.00	0.00	0.00	4.58
176	177	0.808125	TCCGTTGATTTTGGCGATGG	59.192	50.000	0.00	0.00	0.00	3.51
186	187	2.584970	GGCGATGGCGACGATGAA	60.585	61.111	0.00	0.00	41.24	2.57
196	197	1.277326	CGACGATGAAAATCGAGGCA	58.723	50.000	14.48	0.00	46.12	4.75
197	198	1.860950	CGACGATGAAAATCGAGGCAT	59.139	47.619	14.48	0.00	46.12	4.40
280	281	2.800736	CATGCAAGTAAGGCGGCC	59.199	61.111	12.11	12.11	0.00	6.13
281	282	2.440247	ATGCAAGTAAGGCGGCCC	60.440	61.111	17.02	0.00	0.00	5.80
426	615	2.669240	GTTCGGAAGGGAGGGTGG	59.331	66.667	0.00	0.00	0.00	4.61
469	658	9.155053	GTTTTAGACGACATTTTTAGTTGTGAG	57.845	33.333	0.00	0.00	33.85	3.51
471	660	4.755123	AGACGACATTTTTAGTTGTGAGGG	59.245	41.667	0.00	0.00	33.85	4.30
493	682	1.623811	AGGGCAGTTTCTTTAGAGCGA	59.376	47.619	0.00	0.00	0.00	4.93
521	710	7.885297	TGGGTTTCTTCATAGAAGACATTTTG	58.115	34.615	8.84	0.00	41.25	2.44
624	813	0.672401	AACGTCCGCTGGGTAACATG	60.672	55.000	0.00	0.00	39.74	3.21
625	814	1.813753	CGTCCGCTGGGTAACATGG	60.814	63.158	0.00	0.00	39.74	3.66
630	819	2.112815	GCTGGGTAACATGGCCGTC	61.113	63.158	0.00	0.00	39.74	4.79
632	821	0.107214	CTGGGTAACATGGCCGTCAT	60.107	55.000	0.00	0.00	36.31	3.06
699	888	1.743772	CGGCACTGCTGCTAACCTTAT	60.744	52.381	0.00	0.00	43.66	1.73
801	990	1.071605	GCTTGTGGTCGTCTCATCAC	58.928	55.000	0.00	0.00	0.00	3.06
847	1036	6.550843	TCAATGTCTGGTATTACATTTTGCG	58.449	36.000	0.00	0.00	42.22	4.85
870	1059	4.179298	ACACTGATCGATCTTGTGTGATG	58.821	43.478	34.43	20.78	40.59	3.07
928	1117	1.115467	AGAAAGATCGCGGTCCATCT	58.885	50.000	17.38	16.77	0.00	2.90
939	1128	1.606531	GTCCATCTCTTGCAGCCCT	59.393	57.895	0.00	0.00	0.00	5.19
950	1139	3.406200	CAGCCCTCCTGACCCTGG	61.406	72.222	0.00	0.00	44.64	4.45
1005	1194	3.840831	CCATCAGGCAACGAGAGAA	57.159	52.632	0.00	0.00	46.39	2.87
1037	1226	3.448686	CTGGTAGGTTAATCAGTGCTCG	58.551	50.000	0.00	0.00	0.00	5.03
1171	1377	0.528017	TCATCTCTGTCGGTGCAGTC	59.472	55.000	0.00	0.00	37.70	3.51
1173	1379	0.529833	ATCTCTGTCGGTGCAGTCTG	59.470	55.000	0.00	0.00	37.70	3.51
1369	1578	2.742372	CGCACCAACTTCCCCTCG	60.742	66.667	0.00	0.00	0.00	4.63
1661	1894	2.983433	GTCATCGACCAGCCAGATG	58.017	57.895	0.00	0.00	42.11	2.90
1666	1899	1.070445	CGACCAGCCAGATGGATCC	59.930	63.158	9.31	4.20	43.57	3.36
1712	1949	1.672881	CATCTTCCATTCCCTTGTCGC	59.327	52.381	0.00	0.00	0.00	5.19
1718	1955	0.539051	CATTCCCTTGTCGCCTCTCT	59.461	55.000	0.00	0.00	0.00	3.10
1913	2150	1.305201	GTTGACCGGCTGAGTTTTCA	58.695	50.000	0.00	0.00	0.00	2.69
2030	2267	6.302269	TCCTTATACCGTAGTTCCTAAGAGG	58.698	44.000	0.00	0.00	36.46	3.69
2032	2269	6.430616	CCTTATACCGTAGTTCCTAAGAGGAG	59.569	46.154	0.00	0.00	46.73	3.69
2034	2271	2.579860	ACCGTAGTTCCTAAGAGGAGGA	59.420	50.000	5.09	0.00	46.73	3.71
2039	2276	3.905968	AGTTCCTAAGAGGAGGAGTAGC	58.094	50.000	0.00	0.00	46.73	3.58
2050	2287	2.737252	GGAGGAGTAGCAACACTTTTCG	59.263	50.000	0.00	0.00	0.00	3.46
2130	2367	6.182627	AGAGCTGGTTTGTCATGATTTGATA	58.817	36.000	0.00	0.00	36.54	2.15
2131	2368	6.660521	AGAGCTGGTTTGTCATGATTTGATAA	59.339	34.615	0.00	0.00	36.54	1.75
2148	2385	8.627208	ATTTGATAAGAAGAAAGAACTGCTCA	57.373	30.769	0.00	0.00	0.00	4.26
2156	2393	2.360475	GAACTGCTCAGGCCCCAC	60.360	66.667	0.00	0.00	37.74	4.61
2169	2406	0.541392	GCCCCACCCCATGAAATTTC	59.459	55.000	11.41	11.41	0.00	2.17
2416	2653	0.635009	TCCTCCTCCTTACCCATCGT	59.365	55.000	0.00	0.00	0.00	3.73
2417	2654	0.753262	CCTCCTCCTTACCCATCGTG	59.247	60.000	0.00	0.00	0.00	4.35
2452	2689	2.345641	CCATCGAAGACACGTGATTCAC	59.654	50.000	25.01	6.73	42.51	3.18
2494	2731	2.009051	CTTCTGCATGCGATGGTTGTA	58.991	47.619	14.09	0.00	0.00	2.41
2497	2734	0.392863	TGCATGCGATGGTTGTAGCT	60.393	50.000	14.09	0.00	0.00	3.32
2508	2745	0.882927	GTTGTAGCTGCCGACAACCA	60.883	55.000	25.98	4.58	45.82	3.67
2523	2760	4.740822	CCACCCCCTTTCCGCCTG	62.741	72.222	0.00	0.00	0.00	4.85
2528	2765	3.431725	CCCTTTCCGCCTGCGAAC	61.432	66.667	13.94	0.00	42.83	3.95
2530	2767	2.358737	CTTTCCGCCTGCGAACCT	60.359	61.111	13.94	0.00	42.83	3.50
2531	2768	1.079405	CTTTCCGCCTGCGAACCTA	60.079	57.895	13.94	0.00	42.83	3.08
2532	2769	1.359459	CTTTCCGCCTGCGAACCTAC	61.359	60.000	13.94	0.00	42.83	3.18
2536	2774	2.572284	GCCTGCGAACCTACGACT	59.428	61.111	0.00	0.00	35.09	4.18
2557	2795	1.449601	CCATGGCCGGTGTCACTAC	60.450	63.158	1.90	0.00	0.00	2.73
2608	2846	3.777465	CAAGCTGTGGATCTTGGAATG	57.223	47.619	0.00	0.00	36.83	2.67
2611	2849	5.128205	CAAGCTGTGGATCTTGGAATGATA	58.872	41.667	0.00	0.00	36.83	2.15
2628	2866	6.825721	GGAATGATAGTGAACAGGAGACAAAT	59.174	38.462	0.00	0.00	0.00	2.32
2633	2871	2.030805	GTGAACAGGAGACAAATGGCAC	60.031	50.000	0.00	0.00	0.00	5.01
2639	2877	1.812571	GGAGACAAATGGCACGATGTT	59.187	47.619	0.00	0.00	0.00	2.71
2644	2882	3.896122	ACAAATGGCACGATGTTTACAC	58.104	40.909	0.00	0.00	0.00	2.90
2646	2884	4.202060	ACAAATGGCACGATGTTTACACAA	60.202	37.500	0.00	0.00	36.16	3.33
2732	3164	3.245839	TGGGTACAGGTTGATCTACCTCA	60.246	47.826	23.84	16.05	45.44	3.86
2748	3180	3.262420	ACCTCAAGATCGTATGTTGTGC	58.738	45.455	0.00	0.00	35.29	4.57
2835	3280	1.161843	GGGTTACACATGGTCGGTTG	58.838	55.000	0.00	0.00	0.00	3.77
2859	3304	3.470645	ACTAGGGATAAACATGCCGAC	57.529	47.619	0.00	0.00	37.11	4.79

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
7	8	3.267860	CCTCTTGGCGCTCGCATC	61.268	66.667	16.36	0.14	44.11	3.91
11	12	4.521062	CCCTCCTCTTGGCGCTCG	62.521	72.222	7.64	0.00	0.00	5.03
29	30	0.750850	TGCCGCCTCTAAGTATGTCC	59.249	55.000	0.00	0.00	0.00	4.02
38	39	3.449227	CACTCCGTGCCGCCTCTA	61.449	66.667	0.00	0.00	0.00	2.43
186	187	1.134280	CACTCTCCCATGCCTCGATTT	60.134	52.381	0.00	0.00	0.00	2.17
196	197	1.690845	CCTCTAGCCACACTCTCCCAT	60.691	57.143	0.00	0.00	0.00	4.00
197	198	0.324738	CCTCTAGCCACACTCTCCCA	60.325	60.000	0.00	0.00	0.00	4.37
265	266	3.646715	AGGGCCGCCTTACTTGCA	61.647	61.111	9.86	0.00	0.00	4.08
266	267	3.134127	CAGGGCCGCCTTACTTGC	61.134	66.667	9.86	0.00	0.00	4.01
267	268	2.438434	CCAGGGCCGCCTTACTTG	60.438	66.667	9.86	0.89	0.00	3.16
268	269	2.609610	TCCAGGGCCGCCTTACTT	60.610	61.111	9.86	0.00	0.00	2.24
280	281	1.377725	GTGCCACATCCACTCCAGG	60.378	63.158	0.00	0.00	0.00	4.45
281	282	1.742880	CGTGCCACATCCACTCCAG	60.743	63.158	0.00	0.00	0.00	3.86
415	604	4.066139	GCCATGCCACCCTCCCTT	62.066	66.667	0.00	0.00	0.00	3.95
469	658	3.348119	CTCTAAAGAAACTGCCCTTCCC	58.652	50.000	0.00	0.00	0.00	3.97
471	660	2.416893	CGCTCTAAAGAAACTGCCCTTC	59.583	50.000	0.00	0.00	0.00	3.46
493	682	6.126863	TGTCTTCTATGAAGAAACCCATGT	57.873	37.500	11.03	0.00	41.19	3.21
583	772	1.206610	GCTCAGAGAGGATGACAAGCA	59.793	52.381	0.00	0.00	0.00	3.91
624	813	2.812591	TCGTAGAGATAGAATGACGGCC	59.187	50.000	0.00	0.00	0.00	6.13
625	814	4.485024	TTCGTAGAGATAGAATGACGGC	57.515	45.455	0.00	0.00	38.43	5.68
632	821	8.516234	GCTGAAATCCTATTCGTAGAGATAGAA	58.484	37.037	0.00	0.00	38.43	2.10
720	909	5.413213	AGTGTACGTCCTGCAGATATAGATC	59.587	44.000	17.39	0.03	0.00	2.75
847	1036	3.838120	TCACACAAGATCGATCAGTGTC	58.162	45.455	34.54	12.27	42.41	3.67
870	1059	2.854777	AGCGCGCGATATTATCTCATTC	59.145	45.455	37.18	10.35	0.00	2.67
928	1117	2.596851	GGTCAGGAGGGCTGCAAGA	61.597	63.158	0.50	0.00	34.07	3.02
959	1148	2.591148	CGTCGGGTTTATATACATCGCG	59.409	50.000	0.00	0.00	36.19	5.87
965	1154	3.732721	GCAGACACGTCGGGTTTATATAC	59.267	47.826	0.00	0.00	34.09	1.47
1005	1194	3.717294	CTACCAGGCCGGCCTTGT	61.717	66.667	43.33	43.33	45.70	3.16
1024	1213	1.135199	GGTCGGACGAGCACTGATTAA	60.135	52.381	17.75	0.00	41.72	1.40
1037	1226	2.879462	GCATGTCGTCGGTCGGAC	60.879	66.667	0.00	0.00	42.48	4.79
1061	1252	1.356059	TCACTCCTCTGTACCTCTGCT	59.644	52.381	0.00	0.00	0.00	4.24
1171	1377	3.635331	CACCATTGACAGAAAACTGCAG	58.365	45.455	13.48	13.48	0.00	4.41
1173	1379	2.035066	AGCACCATTGACAGAAAACTGC	59.965	45.455	0.00	0.00	0.00	4.40
1175	1381	2.549754	CGAGCACCATTGACAGAAAACT	59.450	45.455	0.00	0.00	0.00	2.66
1179	1385	0.955428	GGCGAGCACCATTGACAGAA	60.955	55.000	0.00	0.00	0.00	3.02
1180	1386	1.375908	GGCGAGCACCATTGACAGA	60.376	57.895	0.00	0.00	0.00	3.41
1181	1387	1.672030	TGGCGAGCACCATTGACAG	60.672	57.895	0.00	0.00	33.75	3.51
1182	1388	1.965930	GTGGCGAGCACCATTGACA	60.966	57.895	0.00	0.00	43.01	3.58
1188	1394	4.710695	CGTACGTGGCGAGCACCA	62.711	66.667	7.22	0.00	37.38	4.17
1661	1894	0.245266	GCTAGCTAGCGAAGGGATCC	59.755	60.000	28.89	1.92	39.82	3.36
1712	1949	4.278975	ACAAAACAGCTAAGGAGAGAGG	57.721	45.455	0.00	0.00	0.00	3.69
1772	2009	5.575157	TGGACTAGAGATGCCCTAATAGAG	58.425	45.833	0.00	0.00	0.00	2.43
1858	2095	9.850628	TCGTTTACCATATAAAGATATCTTCCG	57.149	33.333	18.19	5.69	34.61	4.30
1872	2109	2.548057	CGGCAGCAATCGTTTACCATAT	59.452	45.455	0.00	0.00	0.00	1.78
1991	2228	0.620556	AAGGATGGAGAACGGTGCAT	59.379	50.000	0.00	0.00	0.00	3.96
1992	2229	1.271856	TAAGGATGGAGAACGGTGCA	58.728	50.000	0.00	0.00	0.00	4.57
1999	2236	5.537674	GGAACTACGGTATAAGGATGGAGAA	59.462	44.000	0.00	0.00	0.00	2.87
2030	2267	3.391049	ACGAAAAGTGTTGCTACTCCTC	58.609	45.455	0.00	0.00	0.00	3.71
2032	2269	4.547406	AAACGAAAAGTGTTGCTACTCC	57.453	40.909	0.00	0.00	0.00	3.85
2034	2271	5.124936	AGGAAAAACGAAAAGTGTTGCTACT	59.875	36.000	0.00	0.00	30.98	2.57
2039	2276	4.728608	CGAGAGGAAAAACGAAAAGTGTTG	59.271	41.667	0.00	0.00	28.94	3.33
2130	2367	3.145286	GCCTGAGCAGTTCTTTCTTCTT	58.855	45.455	0.00	0.00	39.53	2.52
2131	2368	2.551938	GGCCTGAGCAGTTCTTTCTTCT	60.552	50.000	0.00	0.00	42.56	2.85
2148	2385	1.825277	AATTTCATGGGGTGGGGCCT	61.825	55.000	0.84	0.00	37.43	5.19
2460	2697	1.229209	AGAAGGAAGGGAGGACGCA	60.229	57.895	0.00	0.00	0.00	5.24
2472	2709	0.035152	AACCATCGCATGCAGAAGGA	60.035	50.000	28.05	15.29	31.53	3.36
2494	2731	4.643387	GGGTGGTTGTCGGCAGCT	62.643	66.667	3.28	0.00	0.00	4.24
2523	2760	2.508663	GGCCAGTCGTAGGTTCGC	60.509	66.667	0.00	0.00	0.00	4.70
2524	2761	0.806102	CATGGCCAGTCGTAGGTTCG	60.806	60.000	13.05	0.00	0.00	3.95
2525	2762	0.462047	CCATGGCCAGTCGTAGGTTC	60.462	60.000	13.05	0.00	0.00	3.62
2526	2763	1.602237	CCATGGCCAGTCGTAGGTT	59.398	57.895	13.05	0.00	0.00	3.50
2528	2765	2.203070	GCCATGGCCAGTCGTAGG	60.203	66.667	27.24	7.16	34.56	3.18
2554	2792	2.194271	GAGATCTGCCGGTTTTCGTAG	58.806	52.381	0.00	0.00	37.11	3.51
2557	2795	1.421410	CCGAGATCTGCCGGTTTTCG	61.421	60.000	13.39	4.71	40.78	3.46
2589	2827	3.726557	TCATTCCAAGATCCACAGCTT	57.273	42.857	0.00	0.00	0.00	3.74
2592	2830	5.922053	TCACTATCATTCCAAGATCCACAG	58.078	41.667	0.00	0.00	0.00	3.66
2607	2845	5.491070	CCATTTGTCTCCTGTTCACTATCA	58.509	41.667	0.00	0.00	0.00	2.15
2608	2846	4.333926	GCCATTTGTCTCCTGTTCACTATC	59.666	45.833	0.00	0.00	0.00	2.08
2611	2849	2.158623	TGCCATTTGTCTCCTGTTCACT	60.159	45.455	0.00	0.00	0.00	3.41
2628	2866	2.566913	ACTTGTGTAAACATCGTGCCA	58.433	42.857	0.00	0.00	0.00	4.92
2633	2871	3.120786	GGTCCGAACTTGTGTAAACATCG	60.121	47.826	1.28	1.28	0.00	3.84
2639	2877	2.298163	GAGAGGGTCCGAACTTGTGTAA	59.702	50.000	0.00	0.00	0.00	2.41
2644	2882	2.037251	TCTTTGAGAGGGTCCGAACTTG	59.963	50.000	0.00	0.00	0.00	3.16
2646	2884	1.896465	CTCTTTGAGAGGGTCCGAACT	59.104	52.381	0.00	0.00	38.67	3.01
2697	3129	3.711704	CCTGTACCCAATACTCCATCACT	59.288	47.826	0.00	0.00	34.56	3.41
2698	3130	3.454812	ACCTGTACCCAATACTCCATCAC	59.545	47.826	0.00	0.00	34.56	3.06
2732	3164	5.581085	GGTTTAGAGCACAACATACGATCTT	59.419	40.000	0.00	0.00	0.00	2.40
2748	3180	7.042658	CGCAATTACTAGCTTTAGGGTTTAGAG	60.043	40.741	0.00	0.00	0.00	2.43
2835	3280	2.623416	GGCATGTTTATCCCTAGTTGGC	59.377	50.000	0.00	0.00	0.00	4.52

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.