Multiple sequence alignment - TraesCS2B01G529700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G529700 chr2B 100.000 4753 0 0 1 4753 724654504 724649752 0.000000e+00 8778.0
1 TraesCS2B01G529700 chr2B 88.803 1938 213 4 1259 3194 797174033 797175968 0.000000e+00 2374.0
2 TraesCS2B01G529700 chr2B 98.712 466 5 1 721 1185 724650886 724650421 0.000000e+00 826.0
3 TraesCS2B01G529700 chr2B 98.712 466 5 1 3619 4084 724653784 724653320 0.000000e+00 826.0
4 TraesCS2B01G529700 chr2B 92.035 565 35 6 116 670 724641790 724641226 0.000000e+00 785.0
5 TraesCS2B01G529700 chr2B 87.087 666 77 9 4095 4752 724641221 724640557 0.000000e+00 745.0
6 TraesCS2B01G529700 chr2B 85.560 554 53 16 4084 4621 46240946 46241488 5.370000e-154 555.0
7 TraesCS2B01G529700 chr2B 89.630 135 13 1 3513 3646 117720503 117720369 2.270000e-38 171.0
8 TraesCS2B01G529700 chr3B 96.400 3361 105 2 724 4084 281414986 281418330 0.000000e+00 5522.0
9 TraesCS2B01G529700 chr3B 96.400 3361 106 1 724 4084 281516716 281520061 0.000000e+00 5522.0
10 TraesCS2B01G529700 chr3B 95.093 1712 81 2 1169 2877 449152956 449154667 0.000000e+00 2693.0
11 TraesCS2B01G529700 chr3B 88.843 726 63 8 2913 3636 793127093 793127802 0.000000e+00 876.0
12 TraesCS2B01G529700 chr3B 99.352 463 3 0 3622 4084 281516715 281517177 0.000000e+00 839.0
13 TraesCS2B01G529700 chr3B 99.136 463 4 0 3622 4084 281414985 281415447 0.000000e+00 833.0
14 TraesCS2B01G529700 chr3B 98.298 470 7 1 721 1189 281417865 281418334 0.000000e+00 822.0
15 TraesCS2B01G529700 chr3B 98.085 470 8 1 721 1189 281519596 281520065 0.000000e+00 817.0
16 TraesCS2B01G529700 chr3B 83.505 582 70 18 116 684 449452946 449452378 1.960000e-143 520.0
17 TraesCS2B01G529700 chr3B 85.657 251 28 4 4106 4350 405261684 405261436 1.700000e-64 257.0
18 TraesCS2B01G529700 chr3B 91.304 92 5 1 30 118 303747076 303747167 6.460000e-24 122.0
19 TraesCS2B01G529700 chr3B 92.045 88 5 1 30 115 722528467 722528380 6.460000e-24 122.0
20 TraesCS2B01G529700 chr1B 93.185 2377 144 8 1262 3636 563541445 563539085 0.000000e+00 3476.0
21 TraesCS2B01G529700 chr1B 94.536 183 9 1 3743 3925 205878443 205878262 1.010000e-71 281.0
22 TraesCS2B01G529700 chr1B 93.989 183 10 1 844 1026 205878443 205878262 4.690000e-70 276.0
23 TraesCS2B01G529700 chr1B 91.753 194 11 4 3714 3906 15531751 15531940 1.010000e-66 265.0
24 TraesCS2B01G529700 chr1B 91.237 194 12 4 815 1007 15531751 15531940 4.720000e-65 259.0
25 TraesCS2B01G529700 chr1B 89.691 194 14 5 3714 3906 15583201 15583389 4.750000e-60 243.0
26 TraesCS2B01G529700 chr1B 89.947 189 14 4 3719 3906 15380644 15380460 6.150000e-59 239.0
27 TraesCS2B01G529700 chr1B 89.175 194 15 5 815 1007 15583201 15583389 2.210000e-58 237.0
28 TraesCS2B01G529700 chr1B 89.418 189 15 4 820 1007 15380644 15380460 2.860000e-57 233.0
29 TraesCS2B01G529700 chr1B 80.905 199 32 5 3477 3673 205874256 205874062 8.240000e-33 152.0
30 TraesCS2B01G529700 chr1B 93.103 87 5 1 30 115 212299431 212299517 4.990000e-25 126.0
31 TraesCS2B01G529700 chr1B 93.023 86 5 1 30 115 668641754 668641838 1.800000e-24 124.0
32 TraesCS2B01G529700 chr2A 93.157 1739 89 14 1169 2877 712856386 712858124 0.000000e+00 2525.0
33 TraesCS2B01G529700 chr2A 93.998 1616 96 1 1262 2877 52076275 52074661 0.000000e+00 2446.0
34 TraesCS2B01G529700 chr2A 87.736 742 78 10 2913 3647 712858025 712858760 0.000000e+00 854.0
35 TraesCS2B01G529700 chr2A 81.726 394 48 13 301 672 443516771 443517162 1.660000e-79 307.0
36 TraesCS2B01G529700 chr2A 84.804 204 25 5 116 316 222002186 222002386 2.900000e-47 200.0
37 TraesCS2B01G529700 chr2A 100.000 28 0 0 1 28 721217658 721217631 9.000000e-03 52.8
38 TraesCS2B01G529700 chrUn 92.470 1753 131 1 1262 3014 16475350 16473599 0.000000e+00 2505.0
39 TraesCS2B01G529700 chr7A 93.453 1619 105 1 1259 2877 65073733 65075350 0.000000e+00 2401.0
40 TraesCS2B01G529700 chr7A 89.633 1582 133 20 1000 2551 485878014 485879594 0.000000e+00 1984.0
41 TraesCS2B01G529700 chr7A 83.829 538 77 8 3187 3718 65075435 65075968 1.970000e-138 503.0
42 TraesCS2B01G529700 chr7A 93.583 187 11 1 3899 4084 485878014 485878200 1.300000e-70 278.0
43 TraesCS2B01G529700 chr7A 92.105 190 11 2 1000 1185 485880928 485881117 1.010000e-66 265.0
44 TraesCS2B01G529700 chr7A 79.926 269 40 13 112 375 223474866 223475125 8.120000e-43 185.0
45 TraesCS2B01G529700 chr5A 97.542 1383 34 0 1169 2551 702868996 702867614 0.000000e+00 2366.0
46 TraesCS2B01G529700 chr5A 89.036 1432 118 24 2488 3910 702867623 702866222 0.000000e+00 1738.0
47 TraesCS2B01G529700 chr5A 92.045 88 5 1 30 115 107102046 107102133 6.460000e-24 122.0
48 TraesCS2B01G529700 chr4A 93.338 1426 67 2 1169 2567 593190182 593191606 0.000000e+00 2082.0
49 TraesCS2B01G529700 chr4A 87.523 553 57 10 3100 3645 593192228 593192775 3.120000e-176 628.0
50 TraesCS2B01G529700 chr4A 82.018 456 61 14 116 554 554258875 554258424 7.510000e-98 368.0
51 TraesCS2B01G529700 chr3A 91.780 1399 72 5 1169 2567 36388001 36386646 0.000000e+00 1906.0
52 TraesCS2B01G529700 chr3A 81.570 586 72 27 116 684 412493450 412494016 7.250000e-123 451.0
53 TraesCS2B01G529700 chr3A 93.103 87 5 1 30 115 313870983 313870897 4.990000e-25 126.0
54 TraesCS2B01G529700 chr6B 94.283 997 48 5 2488 3480 262847395 262848386 0.000000e+00 1517.0
55 TraesCS2B01G529700 chr6B 88.843 726 63 8 2913 3636 133448573 133447864 0.000000e+00 876.0
56 TraesCS2B01G529700 chr4B 88.999 809 73 10 2913 3718 75566258 75567053 0.000000e+00 987.0
57 TraesCS2B01G529700 chr4B 83.190 583 71 20 116 684 291279251 291279820 4.240000e-140 508.0
58 TraesCS2B01G529700 chr4B 96.262 107 3 1 1169 1275 75555856 75555961 1.760000e-39 174.0
59 TraesCS2B01G529700 chr2D 85.026 581 66 16 116 684 353211606 353212177 5.340000e-159 571.0
60 TraesCS2B01G529700 chr2D 84.021 582 70 18 116 684 353219168 353219739 5.410000e-149 538.0
61 TraesCS2B01G529700 chr2D 83.733 584 70 16 122 688 522657808 522657233 3.260000e-146 529.0
62 TraesCS2B01G529700 chr2D 83.390 590 72 17 116 688 522642453 522641873 1.520000e-144 523.0
63 TraesCS2B01G529700 chr2D 94.253 87 4 1 30 115 192391402 192391316 1.070000e-26 132.0
64 TraesCS2B01G529700 chr4D 80.905 597 82 20 116 688 446833794 446834382 4.370000e-120 442.0
65 TraesCS2B01G529700 chr6D 90.751 173 13 2 992 1161 349174805 349174633 1.330000e-55 228.0
66 TraesCS2B01G529700 chr6D 90.173 173 14 2 3891 4060 349174805 349174633 6.190000e-54 222.0
67 TraesCS2B01G529700 chr7D 89.944 179 11 4 989 1161 565057907 565057730 1.720000e-54 224.0
68 TraesCS2B01G529700 chr7D 82.677 254 32 8 116 365 508446271 508446026 1.040000e-51 215.0
69 TraesCS2B01G529700 chr7B 82.126 207 32 5 822 1026 730896516 730896313 6.320000e-39 172.0
70 TraesCS2B01G529700 chr7B 89.051 137 15 0 3513 3649 293078038 293078174 2.270000e-38 171.0
71 TraesCS2B01G529700 chr5B 93.103 87 5 1 30 115 263393443 263393357 4.990000e-25 126.0
72 TraesCS2B01G529700 chr5B 100.000 28 0 0 1 28 201797133 201797160 9.000000e-03 52.8
73 TraesCS2B01G529700 chr5D 92.045 88 5 1 30 115 294986949 294986862 6.460000e-24 122.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G529700 chr2B 724649752 724654504 4752 True 8778.000000 8778 100.000000 1 4753 1 chr2B.!!$R2 4752
1 TraesCS2B01G529700 chr2B 797174033 797175968 1935 False 2374.000000 2374 88.803000 1259 3194 1 chr2B.!!$F2 1935
2 TraesCS2B01G529700 chr2B 724650421 724653784 3363 True 826.000000 826 98.712000 721 4084 2 chr2B.!!$R4 3363
3 TraesCS2B01G529700 chr2B 724640557 724641790 1233 True 765.000000 785 89.561000 116 4752 2 chr2B.!!$R3 4636
4 TraesCS2B01G529700 chr2B 46240946 46241488 542 False 555.000000 555 85.560000 4084 4621 1 chr2B.!!$F1 537
5 TraesCS2B01G529700 chr3B 449152956 449154667 1711 False 2693.000000 2693 95.093000 1169 2877 1 chr3B.!!$F2 1708
6 TraesCS2B01G529700 chr3B 281516715 281520065 3350 False 2392.666667 5522 97.945667 721 4084 3 chr3B.!!$F5 3363
7 TraesCS2B01G529700 chr3B 281414985 281418334 3349 False 2392.333333 5522 97.944667 721 4084 3 chr3B.!!$F4 3363
8 TraesCS2B01G529700 chr3B 793127093 793127802 709 False 876.000000 876 88.843000 2913 3636 1 chr3B.!!$F3 723
9 TraesCS2B01G529700 chr3B 449452378 449452946 568 True 520.000000 520 83.505000 116 684 1 chr3B.!!$R2 568
10 TraesCS2B01G529700 chr1B 563539085 563541445 2360 True 3476.000000 3476 93.185000 1262 3636 1 chr1B.!!$R2 2374
11 TraesCS2B01G529700 chr2A 52074661 52076275 1614 True 2446.000000 2446 93.998000 1262 2877 1 chr2A.!!$R1 1615
12 TraesCS2B01G529700 chr2A 712856386 712858760 2374 False 1689.500000 2525 90.446500 1169 3647 2 chr2A.!!$F3 2478
13 TraesCS2B01G529700 chrUn 16473599 16475350 1751 True 2505.000000 2505 92.470000 1262 3014 1 chrUn.!!$R1 1752
14 TraesCS2B01G529700 chr7A 65073733 65075968 2235 False 1452.000000 2401 88.641000 1259 3718 2 chr7A.!!$F2 2459
15 TraesCS2B01G529700 chr7A 485878014 485881117 3103 False 842.333333 1984 91.773667 1000 4084 3 chr7A.!!$F3 3084
16 TraesCS2B01G529700 chr5A 702866222 702868996 2774 True 2052.000000 2366 93.289000 1169 3910 2 chr5A.!!$R1 2741
17 TraesCS2B01G529700 chr4A 593190182 593192775 2593 False 1355.000000 2082 90.430500 1169 3645 2 chr4A.!!$F1 2476
18 TraesCS2B01G529700 chr3A 36386646 36388001 1355 True 1906.000000 1906 91.780000 1169 2567 1 chr3A.!!$R1 1398
19 TraesCS2B01G529700 chr3A 412493450 412494016 566 False 451.000000 451 81.570000 116 684 1 chr3A.!!$F1 568
20 TraesCS2B01G529700 chr6B 262847395 262848386 991 False 1517.000000 1517 94.283000 2488 3480 1 chr6B.!!$F1 992
21 TraesCS2B01G529700 chr6B 133447864 133448573 709 True 876.000000 876 88.843000 2913 3636 1 chr6B.!!$R1 723
22 TraesCS2B01G529700 chr4B 75566258 75567053 795 False 987.000000 987 88.999000 2913 3718 1 chr4B.!!$F2 805
23 TraesCS2B01G529700 chr4B 291279251 291279820 569 False 508.000000 508 83.190000 116 684 1 chr4B.!!$F3 568
24 TraesCS2B01G529700 chr2D 353211606 353212177 571 False 571.000000 571 85.026000 116 684 1 chr2D.!!$F1 568
25 TraesCS2B01G529700 chr2D 353219168 353219739 571 False 538.000000 538 84.021000 116 684 1 chr2D.!!$F2 568
26 TraesCS2B01G529700 chr2D 522657233 522657808 575 True 529.000000 529 83.733000 122 688 1 chr2D.!!$R3 566
27 TraesCS2B01G529700 chr2D 522641873 522642453 580 True 523.000000 523 83.390000 116 688 1 chr2D.!!$R2 572
28 TraesCS2B01G529700 chr4D 446833794 446834382 588 False 442.000000 442 80.905000 116 688 1 chr4D.!!$F1 572

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
716 753 0.030092 TCCCTGACCCCCTTCTATGG 60.03 60.0 0.0 0.0 0.0 2.74 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
4106 4590 2.197465 GTGAGGGATGGTCTAGGGTTT 58.803 52.381 0.0 0.0 0.0 3.27 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 5.869350 GGAAGTCTGAATTGATTTGGTACG 58.131 41.667 0.00 0.00 0.00 3.67
24 25 5.411669 GGAAGTCTGAATTGATTTGGTACGT 59.588 40.000 0.00 0.00 0.00 3.57
25 26 6.592607 GGAAGTCTGAATTGATTTGGTACGTA 59.407 38.462 0.00 0.00 0.00 3.57
26 27 6.963049 AGTCTGAATTGATTTGGTACGTAC 57.037 37.500 17.56 17.56 0.00 3.67
27 28 6.460781 AGTCTGAATTGATTTGGTACGTACA 58.539 36.000 26.02 10.47 0.00 2.90
28 29 7.103641 AGTCTGAATTGATTTGGTACGTACAT 58.896 34.615 26.02 12.01 0.00 2.29
29 30 7.277981 AGTCTGAATTGATTTGGTACGTACATC 59.722 37.037 26.02 19.58 0.00 3.06
30 31 6.537301 TCTGAATTGATTTGGTACGTACATCC 59.463 38.462 26.02 10.69 0.00 3.51
31 32 5.587043 TGAATTGATTTGGTACGTACATCCC 59.413 40.000 26.02 10.33 0.00 3.85
32 33 4.829872 TTGATTTGGTACGTACATCCCT 57.170 40.909 26.02 7.32 0.00 4.20
33 34 4.829872 TGATTTGGTACGTACATCCCTT 57.170 40.909 26.02 6.46 0.00 3.95
34 35 4.761975 TGATTTGGTACGTACATCCCTTC 58.238 43.478 26.02 14.56 0.00 3.46
35 36 4.468510 TGATTTGGTACGTACATCCCTTCT 59.531 41.667 26.02 3.23 0.00 2.85
36 37 5.657745 TGATTTGGTACGTACATCCCTTCTA 59.342 40.000 26.02 2.37 0.00 2.10
37 38 5.999205 TTTGGTACGTACATCCCTTCTAA 57.001 39.130 26.02 8.08 0.00 2.10
38 39 4.989279 TGGTACGTACATCCCTTCTAAC 57.011 45.455 26.02 5.74 0.00 2.34
39 40 3.701040 TGGTACGTACATCCCTTCTAACC 59.299 47.826 26.02 8.13 0.00 2.85
40 41 3.068732 GGTACGTACATCCCTTCTAACCC 59.931 52.174 26.02 0.78 0.00 4.11
41 42 2.823959 ACGTACATCCCTTCTAACCCA 58.176 47.619 0.00 0.00 0.00 4.51
42 43 2.764572 ACGTACATCCCTTCTAACCCAG 59.235 50.000 0.00 0.00 0.00 4.45
43 44 3.028850 CGTACATCCCTTCTAACCCAGA 58.971 50.000 0.00 0.00 0.00 3.86
44 45 3.068307 CGTACATCCCTTCTAACCCAGAG 59.932 52.174 0.00 0.00 33.83 3.35
45 46 1.840635 ACATCCCTTCTAACCCAGAGC 59.159 52.381 0.00 0.00 33.83 4.09
46 47 1.141858 CATCCCTTCTAACCCAGAGCC 59.858 57.143 0.00 0.00 33.83 4.70
47 48 0.118346 TCCCTTCTAACCCAGAGCCA 59.882 55.000 0.00 0.00 33.83 4.75
48 49 0.991920 CCCTTCTAACCCAGAGCCAA 59.008 55.000 0.00 0.00 33.83 4.52
49 50 1.354368 CCCTTCTAACCCAGAGCCAAA 59.646 52.381 0.00 0.00 33.83 3.28
50 51 2.225017 CCCTTCTAACCCAGAGCCAAAA 60.225 50.000 0.00 0.00 33.83 2.44
51 52 3.084786 CCTTCTAACCCAGAGCCAAAAG 58.915 50.000 0.00 0.00 33.83 2.27
52 53 2.879103 TCTAACCCAGAGCCAAAAGG 57.121 50.000 0.00 0.00 0.00 3.11
53 54 1.354368 TCTAACCCAGAGCCAAAAGGG 59.646 52.381 0.00 0.00 46.96 3.95
55 56 4.423231 CCCAGAGCCAAAAGGGTC 57.577 61.111 5.62 5.62 39.65 4.46
56 57 1.675641 CCCAGAGCCAAAAGGGTCG 60.676 63.158 7.94 3.95 40.77 4.79
57 58 2.335712 CCAGAGCCAAAAGGGTCGC 61.336 63.158 7.94 0.00 40.77 5.19
58 59 1.302832 CAGAGCCAAAAGGGTCGCT 60.303 57.895 7.94 0.00 40.77 4.93
59 60 0.036388 CAGAGCCAAAAGGGTCGCTA 60.036 55.000 7.94 0.00 40.77 4.26
60 61 0.250513 AGAGCCAAAAGGGTCGCTAG 59.749 55.000 7.94 0.00 40.77 3.42
61 62 0.036294 GAGCCAAAAGGGTCGCTAGT 60.036 55.000 0.00 0.00 39.65 2.57
62 63 0.400594 AGCCAAAAGGGTCGCTAGTT 59.599 50.000 0.00 0.00 39.65 2.24
63 64 0.803117 GCCAAAAGGGTCGCTAGTTC 59.197 55.000 0.00 0.00 39.65 3.01
64 65 1.880646 GCCAAAAGGGTCGCTAGTTCA 60.881 52.381 0.00 0.00 39.65 3.18
65 66 2.500229 CCAAAAGGGTCGCTAGTTCAA 58.500 47.619 0.00 0.00 0.00 2.69
66 67 2.882137 CCAAAAGGGTCGCTAGTTCAAA 59.118 45.455 0.00 0.00 0.00 2.69
67 68 3.506067 CCAAAAGGGTCGCTAGTTCAAAT 59.494 43.478 0.00 0.00 0.00 2.32
68 69 4.022329 CCAAAAGGGTCGCTAGTTCAAATT 60.022 41.667 0.00 0.00 0.00 1.82
69 70 4.766404 AAAGGGTCGCTAGTTCAAATTG 57.234 40.909 0.00 0.00 0.00 2.32
70 71 2.711542 AGGGTCGCTAGTTCAAATTGG 58.288 47.619 0.00 0.00 0.00 3.16
71 72 2.039879 AGGGTCGCTAGTTCAAATTGGT 59.960 45.455 0.00 0.00 0.00 3.67
72 73 2.161609 GGGTCGCTAGTTCAAATTGGTG 59.838 50.000 0.00 0.00 0.00 4.17
73 74 2.161609 GGTCGCTAGTTCAAATTGGTGG 59.838 50.000 0.00 0.00 0.00 4.61
74 75 2.161609 GTCGCTAGTTCAAATTGGTGGG 59.838 50.000 0.00 0.00 0.00 4.61
75 76 1.472480 CGCTAGTTCAAATTGGTGGGG 59.528 52.381 0.00 0.00 0.00 4.96
76 77 2.525368 GCTAGTTCAAATTGGTGGGGT 58.475 47.619 0.00 0.00 0.00 4.95
77 78 3.692690 GCTAGTTCAAATTGGTGGGGTA 58.307 45.455 0.00 0.00 0.00 3.69
78 79 3.442625 GCTAGTTCAAATTGGTGGGGTAC 59.557 47.826 0.00 0.00 0.00 3.34
79 80 3.895704 AGTTCAAATTGGTGGGGTACT 57.104 42.857 0.00 0.00 0.00 2.73
80 81 4.193240 AGTTCAAATTGGTGGGGTACTT 57.807 40.909 0.00 0.00 0.00 2.24
81 82 4.552674 AGTTCAAATTGGTGGGGTACTTT 58.447 39.130 0.00 0.00 0.00 2.66
82 83 4.343814 AGTTCAAATTGGTGGGGTACTTTG 59.656 41.667 0.00 0.00 0.00 2.77
83 84 3.235200 TCAAATTGGTGGGGTACTTTGG 58.765 45.455 0.00 0.00 0.00 3.28
84 85 2.969262 CAAATTGGTGGGGTACTTTGGT 59.031 45.455 0.00 0.00 0.00 3.67
85 86 4.140994 TCAAATTGGTGGGGTACTTTGGTA 60.141 41.667 0.00 0.00 0.00 3.25
86 87 4.472690 AATTGGTGGGGTACTTTGGTAA 57.527 40.909 0.00 0.00 0.00 2.85
87 88 4.685513 ATTGGTGGGGTACTTTGGTAAT 57.314 40.909 0.00 0.00 0.00 1.89
88 89 5.799978 ATTGGTGGGGTACTTTGGTAATA 57.200 39.130 0.00 0.00 0.00 0.98
89 90 4.573021 TGGTGGGGTACTTTGGTAATAC 57.427 45.455 0.00 0.00 0.00 1.89
90 91 3.915073 TGGTGGGGTACTTTGGTAATACA 59.085 43.478 0.00 0.00 0.00 2.29
91 92 4.263418 TGGTGGGGTACTTTGGTAATACAC 60.263 45.833 0.00 0.00 0.00 2.90
105 106 6.688637 GGTAATACACCCTACATTTTGGAC 57.311 41.667 0.00 0.00 42.07 4.02
106 107 6.181908 GGTAATACACCCTACATTTTGGACA 58.818 40.000 0.00 0.00 42.07 4.02
107 108 6.660094 GGTAATACACCCTACATTTTGGACAA 59.340 38.462 0.00 0.00 42.07 3.18
108 109 6.834168 AATACACCCTACATTTTGGACAAG 57.166 37.500 0.00 0.00 0.00 3.16
109 110 2.890945 ACACCCTACATTTTGGACAAGC 59.109 45.455 0.00 0.00 0.00 4.01
110 111 2.095263 CACCCTACATTTTGGACAAGCG 60.095 50.000 0.00 0.00 0.00 4.68
111 112 2.224670 ACCCTACATTTTGGACAAGCGA 60.225 45.455 0.00 0.00 0.00 4.93
112 113 2.420022 CCCTACATTTTGGACAAGCGAG 59.580 50.000 0.00 0.00 0.00 5.03
113 114 3.074412 CCTACATTTTGGACAAGCGAGT 58.926 45.455 0.00 0.00 0.00 4.18
114 115 3.125316 CCTACATTTTGGACAAGCGAGTC 59.875 47.826 3.33 3.33 37.80 3.36
170 171 0.301687 GCTAATGATGCCACGTCACG 59.698 55.000 0.00 0.00 0.00 4.35
324 332 6.949352 ATTTATCATGTAGAAGCCAACCTG 57.051 37.500 0.00 0.00 0.00 4.00
386 395 7.068593 AGTGGATCAACAACAAATTTCTTGAGA 59.931 33.333 12.44 9.81 0.00 3.27
459 473 2.539547 CGCTCCGAATATTGCCTTTGTG 60.540 50.000 0.00 0.00 0.00 3.33
587 624 5.193679 ACAACCTAATCTACTGGGATTTGC 58.806 41.667 4.10 0.00 37.20 3.68
597 634 4.539235 GGATTTGCCCCAAGTGGT 57.461 55.556 0.00 0.00 0.00 4.16
701 738 2.764128 ACCGTGGCGATCATCCCT 60.764 61.111 0.00 0.00 0.00 4.20
706 743 2.427753 GGCGATCATCCCTGACCC 59.572 66.667 0.00 0.00 33.22 4.46
707 744 2.427753 GCGATCATCCCTGACCCC 59.572 66.667 0.00 0.00 33.22 4.95
709 746 1.460305 CGATCATCCCTGACCCCCT 60.460 63.158 0.00 0.00 33.22 4.79
710 747 1.056700 CGATCATCCCTGACCCCCTT 61.057 60.000 0.00 0.00 33.22 3.95
713 750 1.023719 TCATCCCTGACCCCCTTCTA 58.976 55.000 0.00 0.00 0.00 2.10
714 751 1.585592 TCATCCCTGACCCCCTTCTAT 59.414 52.381 0.00 0.00 0.00 1.98
715 752 1.701847 CATCCCTGACCCCCTTCTATG 59.298 57.143 0.00 0.00 0.00 2.23
716 753 0.030092 TCCCTGACCCCCTTCTATGG 60.030 60.000 0.00 0.00 0.00 2.74
717 754 0.030092 CCCTGACCCCCTTCTATGGA 60.030 60.000 0.00 0.00 0.00 3.41
718 755 1.416608 CCCTGACCCCCTTCTATGGAT 60.417 57.143 0.00 0.00 0.00 3.41
4097 4579 3.070302 GGGCTAACATAAGAGTCTCCCTG 59.930 52.174 0.00 0.00 0.00 4.45
4119 4603 1.596496 CCCCTCAAACCCTAGACCAT 58.404 55.000 0.00 0.00 0.00 3.55
4125 4609 2.196595 CAAACCCTAGACCATCCCTCA 58.803 52.381 0.00 0.00 0.00 3.86
4126 4610 1.880941 AACCCTAGACCATCCCTCAC 58.119 55.000 0.00 0.00 0.00 3.51
4127 4611 0.031010 ACCCTAGACCATCCCTCACC 60.031 60.000 0.00 0.00 0.00 4.02
4131 4615 0.396695 TAGACCATCCCTCACCCGAC 60.397 60.000 0.00 0.00 0.00 4.79
4223 4707 2.049802 TTCGTCGTCGTTCCTGCC 60.050 61.111 1.33 0.00 38.33 4.85
4224 4708 2.558286 TTCGTCGTCGTTCCTGCCT 61.558 57.895 1.33 0.00 38.33 4.75
4280 4765 3.816524 CGCGTCGGCTCCTTCTCT 61.817 66.667 0.00 0.00 36.88 3.10
4283 4768 1.137825 CGTCGGCTCCTTCTCTGTC 59.862 63.158 0.00 0.00 0.00 3.51
4311 4796 1.526686 CACCACTTGGAGCTGTGCA 60.527 57.895 1.14 0.00 38.94 4.57
4312 4797 0.892358 CACCACTTGGAGCTGTGCAT 60.892 55.000 1.14 0.00 38.94 3.96
4329 4814 2.997245 TGCCCCTGCATCGATGAA 59.003 55.556 29.20 18.42 44.23 2.57
4330 4815 1.153107 TGCCCCTGCATCGATGAAG 60.153 57.895 29.20 26.75 44.23 3.02
4331 4816 1.146930 GCCCCTGCATCGATGAAGA 59.853 57.895 31.47 12.61 35.32 2.87
4418 4915 1.202533 GCCCTCTAAGCGCATCTACAA 60.203 52.381 11.47 0.00 0.00 2.41
4454 4951 0.903454 TCTCCCGAACCCTGTTCTCC 60.903 60.000 5.53 0.00 0.00 3.71
4482 4979 1.282930 GATTCGCCGCCGTAAGATCC 61.283 60.000 0.00 0.00 43.02 3.36
4488 4985 2.131709 CGCCGTAAGATCCTCCCCA 61.132 63.158 0.00 0.00 43.02 4.96
4518 5015 2.639327 GCCATGGCCAAAGCTTCGT 61.639 57.895 27.24 0.00 39.73 3.85
4548 5045 1.327690 GCTCACCGTCCCTACCATGA 61.328 60.000 0.00 0.00 0.00 3.07
4555 5052 1.123928 GTCCCTACCATGACTCTGGG 58.876 60.000 0.00 0.00 40.85 4.45
4558 5055 0.911769 CCTACCATGACTCTGGGCAA 59.088 55.000 0.00 0.00 40.85 4.52
4579 5076 0.675633 GCCCTGTCACACTTTGCATT 59.324 50.000 0.00 0.00 0.00 3.56
4635 5133 3.314331 CGCCCCTGTCCTGTGAGT 61.314 66.667 0.00 0.00 0.00 3.41
4638 5136 2.262915 CCCTGTCCTGTGAGTCGC 59.737 66.667 0.00 0.00 0.00 5.19
4640 5138 2.807045 CTGTCCTGTGAGTCGCGC 60.807 66.667 0.00 0.00 0.00 6.86
4691 5189 2.046507 CTTCCGCTGCTGCCTTCT 60.047 61.111 10.24 0.00 35.36 2.85
4705 5203 1.603455 CTTCTTCCTTTGCCGCCCA 60.603 57.895 0.00 0.00 0.00 5.36
4706 5204 0.967380 CTTCTTCCTTTGCCGCCCAT 60.967 55.000 0.00 0.00 0.00 4.00
4708 5206 3.360956 CTTCCTTTGCCGCCCATGC 62.361 63.158 0.00 0.00 0.00 4.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.411669 ACGTACCAAATCAATTCAGACTTCC 59.588 40.000 0.00 0.00 0.00 3.46
2 3 6.932400 TGTACGTACCAAATCAATTCAGACTT 59.068 34.615 22.43 0.00 0.00 3.01
4 5 6.715344 TGTACGTACCAAATCAATTCAGAC 57.285 37.500 22.43 0.00 0.00 3.51
5 6 6.537301 GGATGTACGTACCAAATCAATTCAGA 59.463 38.462 22.43 0.00 0.00 3.27
6 7 6.238374 GGGATGTACGTACCAAATCAATTCAG 60.238 42.308 22.43 0.00 0.00 3.02
7 8 5.587043 GGGATGTACGTACCAAATCAATTCA 59.413 40.000 22.43 0.00 0.00 2.57
8 9 5.820947 AGGGATGTACGTACCAAATCAATTC 59.179 40.000 22.43 6.49 0.00 2.17
9 10 5.751586 AGGGATGTACGTACCAAATCAATT 58.248 37.500 22.43 6.17 0.00 2.32
10 11 5.367945 AGGGATGTACGTACCAAATCAAT 57.632 39.130 22.43 7.65 0.00 2.57
11 12 4.829872 AGGGATGTACGTACCAAATCAA 57.170 40.909 22.43 2.64 0.00 2.57
12 13 4.468510 AGAAGGGATGTACGTACCAAATCA 59.531 41.667 22.43 3.48 0.00 2.57
13 14 5.019785 AGAAGGGATGTACGTACCAAATC 57.980 43.478 22.43 17.36 0.00 2.17
14 15 6.343703 GTTAGAAGGGATGTACGTACCAAAT 58.656 40.000 22.43 9.85 0.00 2.32
15 16 5.337491 GGTTAGAAGGGATGTACGTACCAAA 60.337 44.000 22.43 4.94 0.00 3.28
16 17 4.160252 GGTTAGAAGGGATGTACGTACCAA 59.840 45.833 22.43 5.71 0.00 3.67
17 18 3.701040 GGTTAGAAGGGATGTACGTACCA 59.299 47.826 22.43 11.24 0.00 3.25
18 19 3.068732 GGGTTAGAAGGGATGTACGTACC 59.931 52.174 22.43 8.47 0.00 3.34
19 20 3.701040 TGGGTTAGAAGGGATGTACGTAC 59.299 47.826 18.90 18.90 0.00 3.67
20 21 3.956199 CTGGGTTAGAAGGGATGTACGTA 59.044 47.826 0.00 0.00 0.00 3.57
21 22 2.764572 CTGGGTTAGAAGGGATGTACGT 59.235 50.000 0.00 0.00 0.00 3.57
22 23 3.028850 TCTGGGTTAGAAGGGATGTACG 58.971 50.000 0.00 0.00 30.84 3.67
23 24 3.181464 GCTCTGGGTTAGAAGGGATGTAC 60.181 52.174 0.00 0.00 34.32 2.90
24 25 3.039011 GCTCTGGGTTAGAAGGGATGTA 58.961 50.000 0.00 0.00 34.32 2.29
25 26 1.840635 GCTCTGGGTTAGAAGGGATGT 59.159 52.381 0.00 0.00 34.32 3.06
26 27 1.141858 GGCTCTGGGTTAGAAGGGATG 59.858 57.143 0.00 0.00 34.32 3.51
27 28 1.274416 TGGCTCTGGGTTAGAAGGGAT 60.274 52.381 0.00 0.00 34.32 3.85
28 29 0.118346 TGGCTCTGGGTTAGAAGGGA 59.882 55.000 0.00 0.00 34.32 4.20
29 30 0.991920 TTGGCTCTGGGTTAGAAGGG 59.008 55.000 0.00 0.00 34.32 3.95
30 31 2.879103 TTTGGCTCTGGGTTAGAAGG 57.121 50.000 0.00 0.00 34.32 3.46
31 32 3.084786 CCTTTTGGCTCTGGGTTAGAAG 58.915 50.000 0.00 0.00 34.32 2.85
32 33 2.225017 CCCTTTTGGCTCTGGGTTAGAA 60.225 50.000 0.00 0.00 38.58 2.10
33 34 1.354368 CCCTTTTGGCTCTGGGTTAGA 59.646 52.381 0.00 0.00 38.58 2.10
34 35 1.839424 CCCTTTTGGCTCTGGGTTAG 58.161 55.000 0.00 0.00 38.58 2.34
36 37 4.952482 CCCTTTTGGCTCTGGGTT 57.048 55.556 0.00 0.00 38.58 4.11
38 39 1.675641 CGACCCTTTTGGCTCTGGG 60.676 63.158 0.00 0.00 44.89 4.45
39 40 2.335712 GCGACCCTTTTGGCTCTGG 61.336 63.158 0.00 0.00 37.83 3.86
40 41 0.036388 TAGCGACCCTTTTGGCTCTG 60.036 55.000 0.00 0.00 37.83 3.35
41 42 0.250513 CTAGCGACCCTTTTGGCTCT 59.749 55.000 0.00 0.00 37.83 4.09
42 43 0.036294 ACTAGCGACCCTTTTGGCTC 60.036 55.000 0.00 0.00 37.83 4.70
43 44 0.400594 AACTAGCGACCCTTTTGGCT 59.599 50.000 0.00 0.00 37.83 4.75
44 45 0.803117 GAACTAGCGACCCTTTTGGC 59.197 55.000 0.00 0.00 37.83 4.52
45 46 2.178912 TGAACTAGCGACCCTTTTGG 57.821 50.000 0.00 0.00 41.37 3.28
46 47 4.766404 ATTTGAACTAGCGACCCTTTTG 57.234 40.909 0.00 0.00 0.00 2.44
47 48 4.022329 CCAATTTGAACTAGCGACCCTTTT 60.022 41.667 0.00 0.00 0.00 2.27
48 49 3.506067 CCAATTTGAACTAGCGACCCTTT 59.494 43.478 0.00 0.00 0.00 3.11
49 50 3.081804 CCAATTTGAACTAGCGACCCTT 58.918 45.455 0.00 0.00 0.00 3.95
50 51 2.039879 ACCAATTTGAACTAGCGACCCT 59.960 45.455 0.00 0.00 0.00 4.34
51 52 2.161609 CACCAATTTGAACTAGCGACCC 59.838 50.000 0.00 0.00 0.00 4.46
52 53 2.161609 CCACCAATTTGAACTAGCGACC 59.838 50.000 0.00 0.00 0.00 4.79
53 54 2.161609 CCCACCAATTTGAACTAGCGAC 59.838 50.000 0.00 0.00 0.00 5.19
54 55 2.432444 CCCACCAATTTGAACTAGCGA 58.568 47.619 0.00 0.00 0.00 4.93
55 56 1.472480 CCCCACCAATTTGAACTAGCG 59.528 52.381 0.00 0.00 0.00 4.26
56 57 2.525368 ACCCCACCAATTTGAACTAGC 58.475 47.619 0.00 0.00 0.00 3.42
57 58 4.918588 AGTACCCCACCAATTTGAACTAG 58.081 43.478 0.00 0.00 0.00 2.57
58 59 5.327737 AAGTACCCCACCAATTTGAACTA 57.672 39.130 0.00 0.00 0.00 2.24
59 60 3.895704 AGTACCCCACCAATTTGAACT 57.104 42.857 0.00 0.00 0.00 3.01
60 61 4.502431 CCAAAGTACCCCACCAATTTGAAC 60.502 45.833 0.00 0.00 31.01 3.18
61 62 3.643792 CCAAAGTACCCCACCAATTTGAA 59.356 43.478 0.00 0.00 31.01 2.69
62 63 3.235200 CCAAAGTACCCCACCAATTTGA 58.765 45.455 0.00 0.00 31.01 2.69
63 64 2.969262 ACCAAAGTACCCCACCAATTTG 59.031 45.455 0.00 0.00 0.00 2.32
64 65 3.338110 ACCAAAGTACCCCACCAATTT 57.662 42.857 0.00 0.00 0.00 1.82
65 66 4.472690 TTACCAAAGTACCCCACCAATT 57.527 40.909 0.00 0.00 0.00 2.32
66 67 4.685513 ATTACCAAAGTACCCCACCAAT 57.314 40.909 0.00 0.00 0.00 3.16
67 68 4.353191 TGTATTACCAAAGTACCCCACCAA 59.647 41.667 0.00 0.00 0.00 3.67
68 69 3.915073 TGTATTACCAAAGTACCCCACCA 59.085 43.478 0.00 0.00 0.00 4.17
69 70 4.264253 GTGTATTACCAAAGTACCCCACC 58.736 47.826 0.00 0.00 0.00 4.61
83 84 7.627726 GCTTGTCCAAAATGTAGGGTGTATTAC 60.628 40.741 0.00 0.00 0.00 1.89
84 85 6.376018 GCTTGTCCAAAATGTAGGGTGTATTA 59.624 38.462 0.00 0.00 0.00 0.98
85 86 5.185056 GCTTGTCCAAAATGTAGGGTGTATT 59.815 40.000 0.00 0.00 0.00 1.89
86 87 4.705023 GCTTGTCCAAAATGTAGGGTGTAT 59.295 41.667 0.00 0.00 0.00 2.29
87 88 4.076394 GCTTGTCCAAAATGTAGGGTGTA 58.924 43.478 0.00 0.00 0.00 2.90
88 89 2.890945 GCTTGTCCAAAATGTAGGGTGT 59.109 45.455 0.00 0.00 0.00 4.16
89 90 2.095263 CGCTTGTCCAAAATGTAGGGTG 60.095 50.000 0.00 0.00 0.00 4.61
90 91 2.159382 CGCTTGTCCAAAATGTAGGGT 58.841 47.619 0.00 0.00 0.00 4.34
91 92 2.420022 CTCGCTTGTCCAAAATGTAGGG 59.580 50.000 0.00 0.00 0.00 3.53
92 93 3.074412 ACTCGCTTGTCCAAAATGTAGG 58.926 45.455 0.00 0.00 0.00 3.18
93 94 3.997021 AGACTCGCTTGTCCAAAATGTAG 59.003 43.478 2.92 0.00 37.66 2.74
94 95 3.745975 CAGACTCGCTTGTCCAAAATGTA 59.254 43.478 2.92 0.00 37.66 2.29
95 96 2.549754 CAGACTCGCTTGTCCAAAATGT 59.450 45.455 2.92 0.00 37.66 2.71
96 97 2.549754 ACAGACTCGCTTGTCCAAAATG 59.450 45.455 2.92 0.00 37.66 2.32
97 98 2.549754 CACAGACTCGCTTGTCCAAAAT 59.450 45.455 2.92 0.00 37.66 1.82
98 99 1.939934 CACAGACTCGCTTGTCCAAAA 59.060 47.619 2.92 0.00 37.66 2.44
99 100 1.138069 TCACAGACTCGCTTGTCCAAA 59.862 47.619 2.92 0.00 37.66 3.28
100 101 0.750249 TCACAGACTCGCTTGTCCAA 59.250 50.000 2.92 0.00 37.66 3.53
101 102 0.969149 ATCACAGACTCGCTTGTCCA 59.031 50.000 2.92 0.00 37.66 4.02
102 103 1.354040 CATCACAGACTCGCTTGTCC 58.646 55.000 2.92 0.00 37.66 4.02
103 104 0.718343 GCATCACAGACTCGCTTGTC 59.282 55.000 0.00 0.00 37.23 3.18
104 105 0.671781 GGCATCACAGACTCGCTTGT 60.672 55.000 0.00 0.00 0.00 3.16
105 106 1.364626 GGGCATCACAGACTCGCTTG 61.365 60.000 0.00 0.00 0.00 4.01
106 107 1.078848 GGGCATCACAGACTCGCTT 60.079 57.895 0.00 0.00 0.00 4.68
107 108 2.581354 GGGCATCACAGACTCGCT 59.419 61.111 0.00 0.00 0.00 4.93
108 109 2.887568 CGGGCATCACAGACTCGC 60.888 66.667 0.00 0.00 0.00 5.03
109 110 2.021068 ATCCGGGCATCACAGACTCG 62.021 60.000 0.00 0.00 0.00 4.18
110 111 1.040646 TATCCGGGCATCACAGACTC 58.959 55.000 0.00 0.00 0.00 3.36
111 112 1.496060 TTATCCGGGCATCACAGACT 58.504 50.000 0.00 0.00 0.00 3.24
112 113 2.224281 TGATTATCCGGGCATCACAGAC 60.224 50.000 0.00 0.00 0.00 3.51
113 114 2.046292 TGATTATCCGGGCATCACAGA 58.954 47.619 0.00 0.00 0.00 3.41
114 115 2.549064 TGATTATCCGGGCATCACAG 57.451 50.000 0.00 0.00 0.00 3.66
170 171 5.164119 CGTGAGTTTATCAACAGTAACCGAC 60.164 44.000 0.00 0.00 40.43 4.79
343 351 5.806955 TCCACTTAAATAATTCCCAGGGT 57.193 39.130 5.01 0.00 0.00 4.34
503 517 7.653311 GCTTTTGCTTTTCTCCTCTGATTTTAA 59.347 33.333 0.00 0.00 43.35 1.52
505 519 5.987953 GCTTTTGCTTTTCTCCTCTGATTTT 59.012 36.000 0.00 0.00 43.35 1.82
506 520 5.536260 GCTTTTGCTTTTCTCCTCTGATTT 58.464 37.500 0.00 0.00 43.35 2.17
684 721 2.764128 AGGGATGATCGCCACGGT 60.764 61.111 5.83 0.00 0.00 4.83
685 722 2.280389 CAGGGATGATCGCCACGG 60.280 66.667 5.83 0.00 0.00 4.94
686 723 1.592669 GTCAGGGATGATCGCCACG 60.593 63.158 5.83 0.00 0.00 4.94
687 724 1.227674 GGTCAGGGATGATCGCCAC 60.228 63.158 5.83 3.54 0.00 5.01
688 725 2.443394 GGGTCAGGGATGATCGCCA 61.443 63.158 5.83 0.00 0.00 5.69
689 726 2.427753 GGGTCAGGGATGATCGCC 59.572 66.667 5.83 0.00 0.00 5.54
690 727 2.427753 GGGGTCAGGGATGATCGC 59.572 66.667 0.65 0.65 0.00 4.58
691 728 1.056700 AAGGGGGTCAGGGATGATCG 61.057 60.000 0.00 0.00 0.00 3.69
692 729 0.767998 GAAGGGGGTCAGGGATGATC 59.232 60.000 0.00 0.00 0.00 2.92
701 738 4.569676 TCTTATCCATAGAAGGGGGTCA 57.430 45.455 0.00 0.00 0.00 4.02
706 743 5.248020 ACTCAGCATCTTATCCATAGAAGGG 59.752 44.000 0.00 0.00 0.00 3.95
707 744 6.014755 TGACTCAGCATCTTATCCATAGAAGG 60.015 42.308 0.00 0.00 0.00 3.46
709 746 6.983906 TGACTCAGCATCTTATCCATAGAA 57.016 37.500 0.00 0.00 0.00 2.10
710 747 6.239430 GGTTGACTCAGCATCTTATCCATAGA 60.239 42.308 0.00 0.00 0.00 1.98
713 750 4.411540 AGGTTGACTCAGCATCTTATCCAT 59.588 41.667 0.00 0.00 0.00 3.41
714 751 3.776969 AGGTTGACTCAGCATCTTATCCA 59.223 43.478 0.00 0.00 0.00 3.41
715 752 4.414337 AGGTTGACTCAGCATCTTATCC 57.586 45.455 0.00 0.00 0.00 2.59
716 753 4.574013 CCAAGGTTGACTCAGCATCTTATC 59.426 45.833 0.00 0.00 0.00 1.75
717 754 4.018960 ACCAAGGTTGACTCAGCATCTTAT 60.019 41.667 0.00 0.00 0.00 1.73
718 755 3.327757 ACCAAGGTTGACTCAGCATCTTA 59.672 43.478 0.00 0.00 0.00 2.10
4106 4590 2.197465 GTGAGGGATGGTCTAGGGTTT 58.803 52.381 0.00 0.00 0.00 3.27
4125 4609 1.612739 GAAAGAGAGGGGGTCGGGT 60.613 63.158 0.00 0.00 0.00 5.28
4126 4610 2.368011 GGAAAGAGAGGGGGTCGGG 61.368 68.421 0.00 0.00 0.00 5.14
4127 4611 2.368011 GGGAAAGAGAGGGGGTCGG 61.368 68.421 0.00 0.00 0.00 4.79
4131 4615 2.285442 ACGGGGAAAGAGAGGGGG 60.285 66.667 0.00 0.00 0.00 5.40
4247 4731 0.660595 CGCGTCTATCGGACATGGTC 60.661 60.000 0.00 0.00 44.70 4.02
4251 4736 1.278937 CGACGCGTCTATCGGACAT 59.721 57.895 33.94 0.00 44.70 3.06
4258 4743 2.061182 GAAGGAGCCGACGCGTCTAT 62.061 60.000 33.94 20.70 41.18 1.98
4267 4752 1.002502 TCGACAGAGAAGGAGCCGA 60.003 57.895 0.00 0.00 0.00 5.54
4280 4765 1.008194 GTGGTGCACGTAGTCGACA 60.008 57.895 19.50 0.48 41.61 4.35
4283 4768 1.282248 CCAAGTGGTGCACGTAGTCG 61.282 60.000 11.45 0.00 41.61 4.18
4329 4814 3.383185 GTCCGAGGAAGAAGATGATGTCT 59.617 47.826 0.00 0.00 39.43 3.41
4330 4815 3.712187 GTCCGAGGAAGAAGATGATGTC 58.288 50.000 0.00 0.00 0.00 3.06
4331 4816 2.099921 CGTCCGAGGAAGAAGATGATGT 59.900 50.000 0.00 0.00 0.00 3.06
4356 4841 0.541863 AATCAATCGGCGAAGTCCCT 59.458 50.000 15.93 0.00 0.00 4.20
4357 4842 0.938008 GAATCAATCGGCGAAGTCCC 59.062 55.000 15.93 0.00 0.00 4.46
4482 4979 3.827898 GACCGAGCTCGTGGGGAG 61.828 72.222 32.41 19.19 46.06 4.30
4488 4985 4.498520 CATGGCGACCGAGCTCGT 62.499 66.667 32.41 21.17 35.99 4.18
4527 5024 0.691078 ATGGTAGGGACGGTGAGCAT 60.691 55.000 0.00 0.00 0.00 3.79
4555 5052 0.675633 AAAGTGTGACAGGGCATTGC 59.324 50.000 0.00 0.00 0.00 3.56
4558 5055 0.467844 TGCAAAGTGTGACAGGGCAT 60.468 50.000 0.00 0.00 0.00 4.40
4570 5067 0.527565 GATGGCGGTCAATGCAAAGT 59.472 50.000 0.00 0.00 0.00 2.66
4624 5122 2.749110 GAAGCGCGACTCACAGGACA 62.749 60.000 12.10 0.00 0.00 4.02
4640 5138 4.697756 TGTGGGAAGCGCGGGAAG 62.698 66.667 8.83 0.00 0.00 3.46
4676 5174 2.046892 GAAGAAGGCAGCAGCGGA 60.047 61.111 0.00 0.00 43.41 5.54
4682 5180 1.588597 GGCAAAGGAAGAAGGCAGC 59.411 57.895 0.00 0.00 0.00 5.25
4685 5183 2.568612 GCGGCAAAGGAAGAAGGC 59.431 61.111 0.00 0.00 0.00 4.35
4686 5184 2.343426 GGGCGGCAAAGGAAGAAGG 61.343 63.158 12.47 0.00 0.00 3.46
4689 5187 1.678635 CATGGGCGGCAAAGGAAGA 60.679 57.895 12.47 0.00 0.00 2.87
4691 5189 3.381136 GCATGGGCGGCAAAGGAA 61.381 61.111 12.47 0.00 0.00 3.36
4729 5227 4.442454 GGGAGGGGAAAAGCGGGG 62.442 72.222 0.00 0.00 0.00 5.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.