Multiple sequence alignment - TraesCS2B01G527700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G527700 chr2B 100.000 7101 0 0 1 7101 722095614 722088514 0.000000e+00 13114
1 TraesCS2B01G527700 chr2B 79.049 568 56 33 500 1048 102553265 102553788 1.480000e-86 331
2 TraesCS2B01G527700 chr2A 91.984 2233 89 30 4922 7101 729170982 729168787 0.000000e+00 3049
3 TraesCS2B01G527700 chr2A 99.594 1231 4 1 3691 4921 748455635 748456864 0.000000e+00 2244
4 TraesCS2B01G527700 chr2A 99.673 1225 4 0 3697 4921 575681620 575680396 0.000000e+00 2241
5 TraesCS2B01G527700 chr2A 82.463 2241 190 102 403 2539 729175177 729173036 0.000000e+00 1773
6 TraesCS2B01G527700 chr2A 95.467 375 17 0 1 375 729175552 729175178 3.670000e-167 599
7 TraesCS2B01G527700 chr2A 89.671 426 25 8 3053 3468 729171576 729171160 6.310000e-145 525
8 TraesCS2B01G527700 chr2A 89.037 374 34 7 2542 2910 729172875 729172504 2.330000e-124 457
9 TraesCS2B01G527700 chr2A 89.286 196 16 3 3503 3698 729171155 729170965 2.560000e-59 241
10 TraesCS2B01G527700 chr2A 85.024 207 13 5 2939 3130 729172507 729172304 2.020000e-45 195
11 TraesCS2B01G527700 chr2A 95.575 113 5 0 1186 1298 622751738 622751850 1.570000e-41 182
12 TraesCS2B01G527700 chr1A 99.755 1225 2 1 3697 4921 517046386 517045163 0.000000e+00 2244
13 TraesCS2B01G527700 chr1A 83.333 180 22 6 1504 1680 144559183 144559009 7.370000e-35 159
14 TraesCS2B01G527700 chr1B 99.351 1233 6 2 3697 4929 655770731 655769501 0.000000e+00 2231
15 TraesCS2B01G527700 chr1B 79.262 569 57 31 500 1048 45050426 45050953 2.450000e-89 340
16 TraesCS2B01G527700 chr1B 81.538 325 22 15 736 1048 45043150 45043448 4.280000e-57 233
17 TraesCS2B01G527700 chr4A 99.350 1231 7 1 3691 4921 575698605 575699834 0.000000e+00 2228
18 TraesCS2B01G527700 chr4B 99.429 1225 6 1 3697 4921 5374091 5372868 0.000000e+00 2222
19 TraesCS2B01G527700 chr4B 78.984 571 58 33 500 1048 610015146 610015676 4.110000e-87 333
20 TraesCS2B01G527700 chr4B 78.750 560 61 30 500 1048 602166711 602166199 8.890000e-84 322
21 TraesCS2B01G527700 chr3D 99.429 1225 6 1 3697 4921 413767318 413766095 0.000000e+00 2222
22 TraesCS2B01G527700 chr6A 99.110 1236 9 1 3691 4924 76518182 76519417 0.000000e+00 2220
23 TraesCS2B01G527700 chr6A 98.950 1238 11 2 3697 4934 146532419 146531184 0.000000e+00 2213
24 TraesCS2B01G527700 chr2D 92.986 1326 60 13 4922 6215 594548621 594547297 0.000000e+00 1903
25 TraesCS2B01G527700 chr2D 88.394 1258 80 25 740 1965 594551408 594550185 0.000000e+00 1454
26 TraesCS2B01G527700 chr2D 91.901 889 32 16 6231 7101 594547240 594546374 0.000000e+00 1206
27 TraesCS2B01G527700 chr2D 91.456 831 44 14 2084 2910 594550157 594549350 0.000000e+00 1116
28 TraesCS2B01G527700 chr2D 91.011 712 33 11 1 696 594552200 594551504 0.000000e+00 931
29 TraesCS2B01G527700 chr2D 85.751 779 63 20 2939 3698 594549353 594548604 0.000000e+00 780
30 TraesCS2B01G527700 chr2D 82.492 297 44 3 5695 5991 301752598 301752886 3.290000e-63 254
31 TraesCS2B01G527700 chr2D 94.690 113 6 0 1186 1298 499027106 499026994 7.320000e-40 176
32 TraesCS2B01G527700 chr2D 81.111 180 26 7 1504 1680 499026991 499026817 3.450000e-28 137
33 TraesCS2B01G527700 chrUn 79.123 570 59 30 500 1048 249824561 249824031 8.820000e-89 339
34 TraesCS2B01G527700 chrUn 79.086 569 55 33 500 1048 316039852 316039328 4.110000e-87 333
35 TraesCS2B01G527700 chr5B 78.169 568 63 29 500 1048 561794831 561794306 8.950000e-79 305
36 TraesCS2B01G527700 chr3A 81.337 359 36 18 6771 7101 750496301 750495946 5.460000e-66 263
37 TraesCS2B01G527700 chr3B 81.538 325 22 16 736 1048 604554676 604554378 4.280000e-57 233
38 TraesCS2B01G527700 chr3B 86.826 167 13 5 500 661 604554926 604554764 2.040000e-40 178
39 TraesCS2B01G527700 chr6D 94.690 113 6 0 1186 1298 419598078 419597966 7.320000e-40 176
40 TraesCS2B01G527700 chr6D 90.551 127 11 1 1173 1298 427935992 427935866 4.410000e-37 167
41 TraesCS2B01G527700 chr6D 83.889 180 21 6 1504 1680 419597963 419597789 1.580000e-36 165
42 TraesCS2B01G527700 chr6D 83.333 180 22 6 1504 1680 427935863 427935689 7.370000e-35 159
43 TraesCS2B01G527700 chr6D 84.127 126 17 3 1558 1680 427611454 427611329 1.250000e-22 119
44 TraesCS2B01G527700 chr7B 85.030 167 11 7 500 661 673853422 673853265 2.650000e-34 158
45 TraesCS2B01G527700 chr7A 95.349 86 4 0 1213 1298 126704804 126704719 3.450000e-28 137
46 TraesCS2B01G527700 chr1D 98.667 75 1 0 1224 1298 350880614 350880688 4.470000e-27 134


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G527700 chr2B 722088514 722095614 7100 True 13114.000000 13114 100.000000 1 7101 1 chr2B.!!$R1 7100
1 TraesCS2B01G527700 chr2B 102553265 102553788 523 False 331.000000 331 79.049000 500 1048 1 chr2B.!!$F1 548
2 TraesCS2B01G527700 chr2A 748455635 748456864 1229 False 2244.000000 2244 99.594000 3691 4921 1 chr2A.!!$F2 1230
3 TraesCS2B01G527700 chr2A 575680396 575681620 1224 True 2241.000000 2241 99.673000 3697 4921 1 chr2A.!!$R1 1224
4 TraesCS2B01G527700 chr2A 729168787 729175552 6765 True 977.000000 3049 88.990286 1 7101 7 chr2A.!!$R2 7100
5 TraesCS2B01G527700 chr1A 517045163 517046386 1223 True 2244.000000 2244 99.755000 3697 4921 1 chr1A.!!$R2 1224
6 TraesCS2B01G527700 chr1B 655769501 655770731 1230 True 2231.000000 2231 99.351000 3697 4929 1 chr1B.!!$R1 1232
7 TraesCS2B01G527700 chr1B 45050426 45050953 527 False 340.000000 340 79.262000 500 1048 1 chr1B.!!$F2 548
8 TraesCS2B01G527700 chr4A 575698605 575699834 1229 False 2228.000000 2228 99.350000 3691 4921 1 chr4A.!!$F1 1230
9 TraesCS2B01G527700 chr4B 5372868 5374091 1223 True 2222.000000 2222 99.429000 3697 4921 1 chr4B.!!$R1 1224
10 TraesCS2B01G527700 chr4B 610015146 610015676 530 False 333.000000 333 78.984000 500 1048 1 chr4B.!!$F1 548
11 TraesCS2B01G527700 chr4B 602166199 602166711 512 True 322.000000 322 78.750000 500 1048 1 chr4B.!!$R2 548
12 TraesCS2B01G527700 chr3D 413766095 413767318 1223 True 2222.000000 2222 99.429000 3697 4921 1 chr3D.!!$R1 1224
13 TraesCS2B01G527700 chr6A 76518182 76519417 1235 False 2220.000000 2220 99.110000 3691 4924 1 chr6A.!!$F1 1233
14 TraesCS2B01G527700 chr6A 146531184 146532419 1235 True 2213.000000 2213 98.950000 3697 4934 1 chr6A.!!$R1 1237
15 TraesCS2B01G527700 chr2D 594546374 594552200 5826 True 1231.666667 1903 90.249833 1 7101 6 chr2D.!!$R2 7100
16 TraesCS2B01G527700 chrUn 249824031 249824561 530 True 339.000000 339 79.123000 500 1048 1 chrUn.!!$R1 548
17 TraesCS2B01G527700 chrUn 316039328 316039852 524 True 333.000000 333 79.086000 500 1048 1 chrUn.!!$R2 548
18 TraesCS2B01G527700 chr5B 561794306 561794831 525 True 305.000000 305 78.169000 500 1048 1 chr5B.!!$R1 548
19 TraesCS2B01G527700 chr3B 604554378 604554926 548 True 205.500000 233 84.182000 500 1048 2 chr3B.!!$R1 548

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
330 331 0.039437 ACAGCAAGATCGTCGTCGTT 60.039 50.000 1.33 0.0 38.33 3.85 F
553 568 0.169009 GCAAAGCCCTGTTCGATGTC 59.831 55.000 0.00 0.0 0.00 3.06 F
1554 1771 0.390472 CCGAGGTGAGCCAGTTCTTC 60.390 60.000 0.00 0.0 37.19 2.87 F
1680 1900 1.133790 GACCTCAAGATGTGCATTGCC 59.866 52.381 6.12 0.0 0.00 4.52 F
2931 3363 0.108186 CGTGGCAGCTATTGACTGGA 60.108 55.000 0.00 0.0 35.09 3.86 F
3648 4911 0.171903 CTTGGCTTCATTGCGGAAGG 59.828 55.000 12.63 0.0 43.54 3.46 F
4880 6143 1.294068 TCACCTCTAGCCTACCCCAAT 59.706 52.381 0.00 0.0 0.00 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2199 2465 0.108585 CTAATGGTGGTGGATCCGGG 59.891 60.000 7.39 0.0 39.52 5.73 R
2200 2466 0.837272 ACTAATGGTGGTGGATCCGG 59.163 55.000 7.39 0.0 39.52 5.14 R
2912 3344 0.108186 TCCAGTCAATAGCTGCCACG 60.108 55.000 0.00 0.0 32.93 4.94 R
3612 4875 0.657840 AAGTCACTGACTGCGTTTGC 59.342 50.000 12.59 0.0 42.59 3.68 R
4880 6143 4.468153 ACAAAGCCTTTAGTCCCAAACAAA 59.532 37.500 0.00 0.0 0.00 2.83 R
5525 6799 2.224305 CCCTACTTAAGATCAAGGGCCG 60.224 54.545 10.09 0.0 40.51 6.13 R
6385 7727 0.035439 CGCTTCCATGGGTAGTGGTT 60.035 55.000 13.02 0.0 37.96 3.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 1.440893 CATGGCCTCCTCTGACTCG 59.559 63.158 3.32 0.00 0.00 4.18
24 25 3.057547 CTCCTCTGACTCGGCCGTG 62.058 68.421 27.15 25.86 0.00 4.94
177 178 4.129737 AGCGTGGTCATCGACGGG 62.130 66.667 0.00 0.00 43.86 5.28
195 196 2.508891 GCGGCTGTTCGTCATCTCG 61.509 63.158 0.00 0.00 0.00 4.04
222 223 2.417924 CGAGAGGATGAAGGTGAAGGTG 60.418 54.545 0.00 0.00 0.00 4.00
312 313 3.695606 TCCGTGAGCTGCCTGGAC 61.696 66.667 0.00 0.00 0.00 4.02
330 331 0.039437 ACAGCAAGATCGTCGTCGTT 60.039 50.000 1.33 0.00 38.33 3.85
336 337 4.789075 ATCGTCGTCGTTGGCCGG 62.789 66.667 0.00 0.00 38.33 6.13
375 376 1.135721 GGCCATGTCAAGAAGCAATCC 59.864 52.381 0.00 0.00 0.00 3.01
377 378 1.402968 CCATGTCAAGAAGCAATCCGG 59.597 52.381 0.00 0.00 0.00 5.14
378 379 1.098050 ATGTCAAGAAGCAATCCGGC 58.902 50.000 0.00 0.00 0.00 6.13
384 385 3.683587 GAAGCAATCCGGCGGCAAC 62.684 63.158 23.83 10.59 39.27 4.17
386 387 4.049640 GCAATCCGGCGGCAACAA 62.050 61.111 23.83 3.23 0.00 2.83
387 388 2.126502 CAATCCGGCGGCAACAAC 60.127 61.111 23.83 0.00 0.00 3.32
388 389 3.732892 AATCCGGCGGCAACAACG 61.733 61.111 23.83 0.00 35.39 4.10
496 497 7.452880 AGCAGTCAGATTTTACATGCTTAAA 57.547 32.000 0.00 0.00 39.36 1.52
497 498 7.885297 AGCAGTCAGATTTTACATGCTTAAAA 58.115 30.769 0.00 0.00 39.36 1.52
498 499 8.025445 AGCAGTCAGATTTTACATGCTTAAAAG 58.975 33.333 7.18 0.00 39.36 2.27
527 532 5.069781 TCTGCCTCTAGAATAAAAGCTCTCC 59.930 44.000 0.00 0.00 0.00 3.71
547 562 2.079925 CTAGTCTGCAAAGCCCTGTTC 58.920 52.381 0.00 0.00 0.00 3.18
553 568 0.169009 GCAAAGCCCTGTTCGATGTC 59.831 55.000 0.00 0.00 0.00 3.06
621 646 9.783081 TGTATAATCTGCAAATGATGATGTACT 57.217 29.630 0.00 0.00 0.00 2.73
642 667 9.554395 TGTACTTATCAGTGAAGAAACAATTCA 57.446 29.630 0.00 0.00 34.72 2.57
733 855 5.831997 ACTTGTTGCTGAATTTCCAACTAC 58.168 37.500 15.16 4.89 39.53 2.73
738 887 6.544197 TGTTGCTGAATTTCCAACTACTGTAA 59.456 34.615 15.16 0.00 39.53 2.41
750 899 9.444600 TTCCAACTACTGTAAATTTGTATCCTC 57.555 33.333 0.00 0.00 0.00 3.71
768 917 1.676006 CTCGCCTTGGTCAAACAAACT 59.324 47.619 0.00 0.00 0.00 2.66
770 919 2.494073 TCGCCTTGGTCAAACAAACTTT 59.506 40.909 0.00 0.00 0.00 2.66
771 920 3.056465 TCGCCTTGGTCAAACAAACTTTT 60.056 39.130 0.00 0.00 0.00 2.27
772 921 3.061965 CGCCTTGGTCAAACAAACTTTTG 59.938 43.478 0.00 0.00 43.62 2.44
824 978 5.534654 TGATTGGACGAAAAACTGAAATCCT 59.465 36.000 0.00 0.00 0.00 3.24
835 989 8.794335 AAAAACTGAAATCCTCATCTACCTAC 57.206 34.615 0.00 0.00 32.14 3.18
836 990 7.741554 AAACTGAAATCCTCATCTACCTACT 57.258 36.000 0.00 0.00 32.14 2.57
837 991 8.840200 AAACTGAAATCCTCATCTACCTACTA 57.160 34.615 0.00 0.00 32.14 1.82
838 992 8.472007 AACTGAAATCCTCATCTACCTACTAG 57.528 38.462 0.00 0.00 32.14 2.57
839 993 7.588169 ACTGAAATCCTCATCTACCTACTAGT 58.412 38.462 0.00 0.00 32.14 2.57
840 994 7.722285 ACTGAAATCCTCATCTACCTACTAGTC 59.278 40.741 0.00 0.00 32.14 2.59
841 995 6.711194 TGAAATCCTCATCTACCTACTAGTCG 59.289 42.308 0.00 0.00 0.00 4.18
842 996 6.436738 AATCCTCATCTACCTACTAGTCGA 57.563 41.667 0.00 0.00 0.00 4.20
843 997 5.471556 TCCTCATCTACCTACTAGTCGAG 57.528 47.826 0.00 0.00 0.00 4.04
844 998 3.998341 CCTCATCTACCTACTAGTCGAGC 59.002 52.174 0.00 0.00 0.00 5.03
845 999 4.503469 CCTCATCTACCTACTAGTCGAGCA 60.503 50.000 0.00 0.00 0.00 4.26
846 1000 4.633175 TCATCTACCTACTAGTCGAGCAG 58.367 47.826 0.00 0.00 0.00 4.24
860 1014 3.793144 GCAGCGTGTAGGCACTGC 61.793 66.667 0.00 0.00 43.16 4.40
915 1071 1.713647 TCCAACCCAAATGCCCTCTTA 59.286 47.619 0.00 0.00 0.00 2.10
925 1081 1.289160 TGCCCTCTTATCTTGTGGCT 58.711 50.000 0.00 0.00 39.60 4.75
1003 1184 3.128068 CAGACATGCTGCTGCTGATAAAA 59.872 43.478 17.00 0.00 37.90 1.52
1004 1185 3.952323 AGACATGCTGCTGCTGATAAAAT 59.048 39.130 17.00 0.00 40.48 1.82
1006 1187 3.067742 ACATGCTGCTGCTGATAAAATCC 59.932 43.478 17.00 0.00 40.48 3.01
1007 1188 3.008835 TGCTGCTGCTGATAAAATCCT 57.991 42.857 17.00 0.00 40.48 3.24
1008 1189 2.686405 TGCTGCTGCTGATAAAATCCTG 59.314 45.455 17.00 0.00 40.48 3.86
1010 1192 3.379372 GCTGCTGCTGATAAAATCCTGAA 59.621 43.478 10.92 0.00 36.03 3.02
1016 1198 7.037438 GCTGCTGATAAAATCCTGAATTTTCA 58.963 34.615 0.00 0.00 42.63 2.69
1028 1210 6.033341 TCCTGAATTTTCACTTGTGAAAACG 58.967 36.000 31.17 22.09 46.40 3.60
1118 1304 3.077556 CCACCCTCCTCACCTCCG 61.078 72.222 0.00 0.00 0.00 4.63
1354 1540 2.683933 ATCGCCTCCACTTCCGGT 60.684 61.111 0.00 0.00 0.00 5.28
1365 1551 1.447314 CTTCCGGTCCCGTGTAAGC 60.447 63.158 0.00 0.00 37.81 3.09
1401 1611 2.030540 TCCCTGACAAGTTTCGTACTCG 60.031 50.000 0.00 0.00 35.54 4.18
1402 1612 2.288030 CCCTGACAAGTTTCGTACTCGT 60.288 50.000 0.00 0.00 35.54 4.18
1403 1613 3.058016 CCCTGACAAGTTTCGTACTCGTA 60.058 47.826 0.00 0.00 35.54 3.43
1404 1614 3.910767 CCTGACAAGTTTCGTACTCGTAC 59.089 47.826 0.00 0.00 35.54 3.67
1421 1631 4.637276 TCGTACAACAAATCTCACACCAT 58.363 39.130 0.00 0.00 0.00 3.55
1479 1692 5.211454 TGTCGTCTGCAAAACATATTTGTG 58.789 37.500 3.22 0.00 35.83 3.33
1536 1753 8.655970 GTGTAAATTTTCCTCATTATTTGCACC 58.344 33.333 13.19 1.45 42.53 5.01
1554 1771 0.390472 CCGAGGTGAGCCAGTTCTTC 60.390 60.000 0.00 0.00 37.19 2.87
1560 1780 1.264288 GTGAGCCAGTTCTTCGTTTGG 59.736 52.381 0.00 0.00 0.00 3.28
1614 1834 1.792006 GGTACGAACAGAACCCACTG 58.208 55.000 0.00 0.00 42.78 3.66
1644 1864 2.265424 TGCTATGACGCAGCTGCA 59.735 55.556 36.03 19.38 42.21 4.41
1645 1865 1.375780 TGCTATGACGCAGCTGCAA 60.376 52.632 36.03 22.13 42.21 4.08
1680 1900 1.133790 GACCTCAAGATGTGCATTGCC 59.866 52.381 6.12 0.00 0.00 4.52
1726 1946 3.634448 TGTGTTGGATTCCACGTTGATTT 59.366 39.130 4.45 0.00 34.28 2.17
1732 1952 4.234574 GGATTCCACGTTGATTTGTTTCC 58.765 43.478 0.00 0.00 0.00 3.13
1733 1953 4.022329 GGATTCCACGTTGATTTGTTTCCT 60.022 41.667 0.00 0.00 0.00 3.36
1736 1956 3.563808 TCCACGTTGATTTGTTTCCTCTG 59.436 43.478 0.00 0.00 0.00 3.35
1737 1957 3.315191 CCACGTTGATTTGTTTCCTCTGT 59.685 43.478 0.00 0.00 0.00 3.41
1738 1958 4.513692 CCACGTTGATTTGTTTCCTCTGTA 59.486 41.667 0.00 0.00 0.00 2.74
1739 1959 5.334105 CCACGTTGATTTGTTTCCTCTGTAG 60.334 44.000 0.00 0.00 0.00 2.74
1740 1960 5.236478 CACGTTGATTTGTTTCCTCTGTAGT 59.764 40.000 0.00 0.00 0.00 2.73
1744 1964 7.170998 CGTTGATTTGTTTCCTCTGTAGTAGTT 59.829 37.037 0.00 0.00 0.00 2.24
1747 1967 7.990886 TGATTTGTTTCCTCTGTAGTAGTTGTT 59.009 33.333 0.00 0.00 0.00 2.83
1748 1968 9.485206 GATTTGTTTCCTCTGTAGTAGTTGTTA 57.515 33.333 0.00 0.00 0.00 2.41
1749 1969 9.841295 ATTTGTTTCCTCTGTAGTAGTTGTTAA 57.159 29.630 0.00 0.00 0.00 2.01
1750 1970 9.841295 TTTGTTTCCTCTGTAGTAGTTGTTAAT 57.159 29.630 0.00 0.00 0.00 1.40
1752 1972 9.918630 TGTTTCCTCTGTAGTAGTTGTTAATAC 57.081 33.333 0.00 0.00 34.29 1.89
1767 1987 9.578439 AGTTGTTAATACTACTCGTTCATTACC 57.422 33.333 0.00 0.00 35.85 2.85
1777 1997 4.517832 ACTCGTTCATTACCTTGTTTTCCC 59.482 41.667 0.00 0.00 0.00 3.97
1781 2001 5.689961 CGTTCATTACCTTGTTTTCCCTTTG 59.310 40.000 0.00 0.00 0.00 2.77
1786 2006 8.103935 TCATTACCTTGTTTTCCCTTTGTTTTT 58.896 29.630 0.00 0.00 0.00 1.94
1787 2007 9.384764 CATTACCTTGTTTTCCCTTTGTTTTTA 57.615 29.630 0.00 0.00 0.00 1.52
1789 2009 7.857734 ACCTTGTTTTCCCTTTGTTTTTATG 57.142 32.000 0.00 0.00 0.00 1.90
1791 2011 7.335673 ACCTTGTTTTCCCTTTGTTTTTATGTG 59.664 33.333 0.00 0.00 0.00 3.21
1843 2077 5.012354 TCGGTTTCAGGTAACAAATACTCCT 59.988 40.000 0.00 0.00 41.41 3.69
1927 2161 1.212935 GTCAGCCCCTTCATGGTATGT 59.787 52.381 0.00 0.00 0.00 2.29
1934 2168 2.242196 CCCTTCATGGTATGTCCTTGGT 59.758 50.000 0.00 0.00 40.46 3.67
2005 2240 1.269448 ACAAATGTGGCGTGATGAACC 59.731 47.619 0.00 0.00 0.00 3.62
2046 2296 7.100458 AGTTGTGAATTACTTTGTTTGCTCT 57.900 32.000 0.00 0.00 0.00 4.09
2175 2440 6.971726 TTGTCTACTTGGTCTAGTTTCTGA 57.028 37.500 0.00 0.00 0.00 3.27
2201 2467 7.881775 AATTGAACTTGTTATATCTGGTCCC 57.118 36.000 0.00 0.00 0.00 4.46
2202 2468 5.018539 TGAACTTGTTATATCTGGTCCCG 57.981 43.478 0.00 0.00 0.00 5.14
2297 2567 3.202906 GGCAATTGGAGTATTCGTGCTA 58.797 45.455 7.72 0.00 0.00 3.49
2347 2617 2.324330 TGCGGTTCAGCATCCAACG 61.324 57.895 0.00 0.00 42.92 4.10
2522 2792 8.268605 TGTTCTGGTACCATGCTTATGTTTATA 58.731 33.333 16.75 0.00 0.00 0.98
2603 3031 5.827797 AGATCAACTTGCTGGTTACTTTTCA 59.172 36.000 0.00 0.00 0.00 2.69
2606 3034 7.575414 TCAACTTGCTGGTTACTTTTCATTA 57.425 32.000 0.00 0.00 0.00 1.90
2609 3037 6.970484 ACTTGCTGGTTACTTTTCATTACTG 58.030 36.000 0.00 0.00 0.00 2.74
2673 3101 8.090788 ACCAACTGGACTAATATGTGTAGATT 57.909 34.615 1.86 0.00 38.94 2.40
2727 3156 6.582636 TCTACGACATCTCTGGCATTAAAAT 58.417 36.000 0.00 0.00 0.00 1.82
2728 3157 7.722363 TCTACGACATCTCTGGCATTAAAATA 58.278 34.615 0.00 0.00 0.00 1.40
2729 3158 8.367911 TCTACGACATCTCTGGCATTAAAATAT 58.632 33.333 0.00 0.00 0.00 1.28
2812 3243 3.758023 TGTGACAGCTGTTATCCCATTTG 59.242 43.478 22.65 0.00 0.00 2.32
2826 3257 4.025360 TCCCATTTGCATAATCTTGCTGT 58.975 39.130 0.00 0.00 43.18 4.40
2828 3259 5.300034 TCCCATTTGCATAATCTTGCTGTAG 59.700 40.000 0.00 0.00 43.18 2.74
2836 3267 6.486657 TGCATAATCTTGCTGTAGTTTATCCC 59.513 38.462 0.00 0.00 43.18 3.85
2838 3269 7.878127 GCATAATCTTGCTGTAGTTTATCCCTA 59.122 37.037 0.00 0.00 39.57 3.53
2843 3274 7.686434 TCTTGCTGTAGTTTATCCCTAACTTT 58.314 34.615 0.00 0.00 37.12 2.66
2847 3278 8.989131 TGCTGTAGTTTATCCCTAACTTTAGAT 58.011 33.333 0.00 0.00 37.12 1.98
2848 3279 9.262358 GCTGTAGTTTATCCCTAACTTTAGATG 57.738 37.037 0.00 0.00 37.12 2.90
2859 3290 8.548877 TCCCTAACTTTAGATGTTTTGATAGCT 58.451 33.333 0.00 0.00 32.47 3.32
2872 3303 6.183360 TGTTTTGATAGCTTTTACCCCGTTTT 60.183 34.615 0.00 0.00 0.00 2.43
2882 3313 6.365789 GCTTTTACCCCGTTTTGTTATTTACC 59.634 38.462 0.00 0.00 0.00 2.85
2885 3316 3.573538 ACCCCGTTTTGTTATTTACCCAC 59.426 43.478 0.00 0.00 0.00 4.61
2898 3329 3.655615 TTACCCACACTTGACAAGGTT 57.344 42.857 19.16 2.71 0.00 3.50
2913 3345 0.541863 AGGTTGACCTTAGGATGGCG 59.458 55.000 4.77 0.00 46.09 5.69
2914 3346 0.252197 GGTTGACCTTAGGATGGCGT 59.748 55.000 4.77 0.00 0.00 5.68
2915 3347 1.369625 GTTGACCTTAGGATGGCGTG 58.630 55.000 4.77 0.00 0.00 5.34
2916 3348 0.251916 TTGACCTTAGGATGGCGTGG 59.748 55.000 4.77 0.00 0.00 4.94
2917 3349 1.523938 GACCTTAGGATGGCGTGGC 60.524 63.158 4.77 0.00 0.00 5.01
2918 3350 2.252072 GACCTTAGGATGGCGTGGCA 62.252 60.000 4.77 0.00 0.00 4.92
2919 3351 1.524621 CCTTAGGATGGCGTGGCAG 60.525 63.158 1.74 0.00 0.00 4.85
2920 3352 2.124736 TTAGGATGGCGTGGCAGC 60.125 61.111 2.75 2.75 0.00 5.25
2921 3353 2.599645 CTTAGGATGGCGTGGCAGCT 62.600 60.000 11.48 0.94 37.29 4.24
2922 3354 1.334384 TTAGGATGGCGTGGCAGCTA 61.334 55.000 11.48 3.68 37.29 3.32
2923 3355 1.121407 TAGGATGGCGTGGCAGCTAT 61.121 55.000 11.48 7.32 41.09 2.97
2924 3356 1.526917 GGATGGCGTGGCAGCTATT 60.527 57.895 11.48 0.00 38.46 1.73
2925 3357 1.650912 GATGGCGTGGCAGCTATTG 59.349 57.895 4.27 0.00 38.46 1.90
2926 3358 0.815213 GATGGCGTGGCAGCTATTGA 60.815 55.000 4.27 0.00 38.46 2.57
2927 3359 1.097547 ATGGCGTGGCAGCTATTGAC 61.098 55.000 1.74 0.00 34.60 3.18
2928 3360 1.450312 GGCGTGGCAGCTATTGACT 60.450 57.895 8.45 0.00 35.09 3.41
2929 3361 1.709147 GGCGTGGCAGCTATTGACTG 61.709 60.000 8.45 0.00 35.09 3.51
2930 3362 1.709147 GCGTGGCAGCTATTGACTGG 61.709 60.000 0.00 0.00 35.09 4.00
2931 3363 0.108186 CGTGGCAGCTATTGACTGGA 60.108 55.000 0.00 0.00 35.09 3.86
2932 3364 1.373570 GTGGCAGCTATTGACTGGAC 58.626 55.000 0.00 0.00 35.09 4.02
2933 3365 0.983467 TGGCAGCTATTGACTGGACA 59.017 50.000 0.00 0.00 35.09 4.02
2934 3366 1.350684 TGGCAGCTATTGACTGGACAA 59.649 47.619 0.00 0.00 35.09 3.18
2935 3367 1.740025 GGCAGCTATTGACTGGACAAC 59.260 52.381 0.00 0.00 35.62 3.32
2936 3368 2.616510 GGCAGCTATTGACTGGACAACT 60.617 50.000 0.00 0.00 35.62 3.16
2937 3369 2.675348 GCAGCTATTGACTGGACAACTC 59.325 50.000 0.00 0.00 35.62 3.01
2938 3370 2.926200 CAGCTATTGACTGGACAACTCG 59.074 50.000 0.00 0.00 32.50 4.18
2939 3371 2.093973 AGCTATTGACTGGACAACTCGG 60.094 50.000 0.00 0.00 32.50 4.63
2940 3372 2.094182 GCTATTGACTGGACAACTCGGA 60.094 50.000 0.00 0.00 32.50 4.55
2941 3373 3.430929 GCTATTGACTGGACAACTCGGAT 60.431 47.826 0.00 0.00 32.50 4.18
2942 3374 4.202121 GCTATTGACTGGACAACTCGGATA 60.202 45.833 0.00 0.00 32.50 2.59
2943 3375 5.509840 GCTATTGACTGGACAACTCGGATAT 60.510 44.000 0.00 0.00 32.50 1.63
2951 3383 6.098409 ACTGGACAACTCGGATATTGTATTCT 59.902 38.462 7.53 0.00 39.13 2.40
3030 3469 1.378531 TGTCAAATAGGTGCCGCATC 58.621 50.000 0.00 0.00 0.00 3.91
3069 4229 5.279607 CCATGTCAAATATTGCCCCTAATGG 60.280 44.000 0.00 0.00 0.00 3.16
3109 4367 0.757512 AGCTGCGACATCATCCTGAT 59.242 50.000 0.00 0.00 37.65 2.90
3123 4381 2.536066 TCCTGATATATGGGTCCACCG 58.464 52.381 0.00 0.00 44.64 4.94
3237 4496 0.951040 CCGTCACAACTCAAGGGCTC 60.951 60.000 0.00 0.00 0.00 4.70
3242 4501 3.319122 GTCACAACTCAAGGGCTCAAAAT 59.681 43.478 0.00 0.00 0.00 1.82
3243 4502 3.569701 TCACAACTCAAGGGCTCAAAATC 59.430 43.478 0.00 0.00 0.00 2.17
3293 4553 9.661954 TTTTTAGGATCTCTATCACTCTATGGT 57.338 33.333 0.00 0.00 33.41 3.55
3294 4554 9.661954 TTTTAGGATCTCTATCACTCTATGGTT 57.338 33.333 0.00 0.00 33.41 3.67
3295 4555 8.642935 TTAGGATCTCTATCACTCTATGGTTG 57.357 38.462 0.00 0.00 33.41 3.77
3296 4556 6.015918 AGGATCTCTATCACTCTATGGTTGG 58.984 44.000 0.00 0.00 33.41 3.77
3297 4557 5.337169 GGATCTCTATCACTCTATGGTTGGC 60.337 48.000 0.00 0.00 33.41 4.52
3339 4600 3.641437 TTTTTACGAAATGCAGCAGCT 57.359 38.095 0.00 0.00 42.74 4.24
3372 4633 4.036941 TGCCGTTAAGTTAGGGGAAAAT 57.963 40.909 5.69 0.00 0.00 1.82
3388 4649 7.705700 AGGGGAAAATTACACAAGGTTAGTAT 58.294 34.615 0.00 0.00 0.00 2.12
3532 4795 8.125448 GGATTGATTTATGAGAGAAAACCGAAG 58.875 37.037 0.00 0.00 0.00 3.79
3595 4858 5.419155 AGACACTTTCCATTCGTCTATCTCA 59.581 40.000 0.00 0.00 35.24 3.27
3612 4875 0.459078 TCATCAGAGAGAAGCTGCGG 59.541 55.000 0.00 0.00 33.45 5.69
3615 4878 1.375140 CAGAGAGAAGCTGCGGCAA 60.375 57.895 21.93 0.00 41.70 4.52
3616 4879 0.952497 CAGAGAGAAGCTGCGGCAAA 60.952 55.000 21.93 0.00 41.70 3.68
3648 4911 0.171903 CTTGGCTTCATTGCGGAAGG 59.828 55.000 12.63 0.00 43.54 3.46
3672 4935 5.412526 CATGTTGGCATGGCATAATTTTC 57.587 39.130 23.96 8.23 46.47 2.29
3673 4936 4.822685 TGTTGGCATGGCATAATTTTCT 57.177 36.364 23.96 0.00 0.00 2.52
3674 4937 4.757594 TGTTGGCATGGCATAATTTTCTC 58.242 39.130 23.96 6.01 0.00 2.87
3675 4938 4.467082 TGTTGGCATGGCATAATTTTCTCT 59.533 37.500 23.96 0.00 0.00 3.10
3676 4939 4.659111 TGGCATGGCATAATTTTCTCTG 57.341 40.909 19.43 0.00 0.00 3.35
3677 4940 4.279982 TGGCATGGCATAATTTTCTCTGA 58.720 39.130 19.43 0.00 0.00 3.27
3678 4941 4.897076 TGGCATGGCATAATTTTCTCTGAT 59.103 37.500 19.43 0.00 0.00 2.90
3679 4942 5.010314 TGGCATGGCATAATTTTCTCTGATC 59.990 40.000 19.43 0.00 0.00 2.92
3680 4943 5.010314 GGCATGGCATAATTTTCTCTGATCA 59.990 40.000 15.47 0.00 0.00 2.92
3681 4944 6.295123 GGCATGGCATAATTTTCTCTGATCAT 60.295 38.462 15.47 0.00 0.00 2.45
3682 4945 6.807230 GCATGGCATAATTTTCTCTGATCATC 59.193 38.462 0.00 0.00 0.00 2.92
3683 4946 7.309255 GCATGGCATAATTTTCTCTGATCATCT 60.309 37.037 0.00 0.00 0.00 2.90
3684 4947 7.506328 TGGCATAATTTTCTCTGATCATCTG 57.494 36.000 0.00 0.00 0.00 2.90
3685 4948 6.016527 TGGCATAATTTTCTCTGATCATCTGC 60.017 38.462 0.00 0.00 0.00 4.26
3686 4949 6.016527 GGCATAATTTTCTCTGATCATCTGCA 60.017 38.462 0.00 0.00 0.00 4.41
3687 4950 7.309255 GGCATAATTTTCTCTGATCATCTGCAT 60.309 37.037 0.00 0.00 0.00 3.96
3688 4951 7.539022 GCATAATTTTCTCTGATCATCTGCATG 59.461 37.037 0.00 0.00 0.00 4.06
3689 4952 4.895224 TTTTCTCTGATCATCTGCATGC 57.105 40.909 11.82 11.82 0.00 4.06
3690 4953 3.553828 TTCTCTGATCATCTGCATGCA 57.446 42.857 21.29 21.29 0.00 3.96
3691 4954 3.553828 TCTCTGATCATCTGCATGCAA 57.446 42.857 22.88 13.05 0.00 4.08
3692 4955 4.086706 TCTCTGATCATCTGCATGCAAT 57.913 40.909 22.88 12.30 0.00 3.56
3693 4956 4.065789 TCTCTGATCATCTGCATGCAATC 58.934 43.478 22.88 20.56 0.00 2.67
3694 4957 3.146847 TCTGATCATCTGCATGCAATCC 58.853 45.455 22.88 8.32 0.00 3.01
3695 4958 2.884639 CTGATCATCTGCATGCAATCCA 59.115 45.455 22.88 12.21 0.00 3.41
4880 6143 1.294068 TCACCTCTAGCCTACCCCAAT 59.706 52.381 0.00 0.00 0.00 3.16
4927 6192 5.714047 TGTTGTTTGTTGTTGTTATCTGCA 58.286 33.333 0.00 0.00 0.00 4.41
4942 6207 7.149307 TGTTATCTGCATGCAATCCATTATTG 58.851 34.615 22.88 5.86 46.62 1.90
4943 6208 7.014422 TGTTATCTGCATGCAATCCATTATTGA 59.986 33.333 22.88 11.44 46.81 2.57
4997 6262 7.731882 AAAATCACAAAATTGACATGATGCA 57.268 28.000 0.00 0.00 30.53 3.96
5022 6287 6.142139 CGCATTTCAAACACAGAATTCAGTA 58.858 36.000 8.44 0.00 0.00 2.74
5032 6297 7.807977 ACACAGAATTCAGTAACATGAACTT 57.192 32.000 8.44 0.00 41.76 2.66
5068 6333 6.944234 AAGACTTTTCTTCTGGAAATCGTT 57.056 33.333 0.00 0.00 42.63 3.85
5073 6338 8.446599 ACTTTTCTTCTGGAAATCGTTCTAAA 57.553 30.769 0.00 0.00 42.63 1.85
5126 6393 6.266168 TGTTGGGAATTGCTATTGTTACAG 57.734 37.500 0.00 0.00 0.00 2.74
5133 6400 6.961554 GGAATTGCTATTGTTACAGAAGTTCG 59.038 38.462 0.00 0.00 0.00 3.95
5137 6404 5.633601 TGCTATTGTTACAGAAGTTCGAGTG 59.366 40.000 12.46 2.37 0.00 3.51
5265 6539 1.412079 TTTGAAGTTGCAGGGCACAT 58.588 45.000 0.00 0.00 38.71 3.21
5284 6558 8.507249 GGGCACATGATATCTTTAATACTTGAC 58.493 37.037 0.00 0.00 0.00 3.18
5308 6582 7.907389 ACCTAGAACTATGATCAAACAACTGA 58.093 34.615 0.00 0.00 0.00 3.41
5309 6583 7.819900 ACCTAGAACTATGATCAAACAACTGAC 59.180 37.037 0.00 0.00 0.00 3.51
5340 6614 6.686130 AATTTGAAACGACTGTACTACTCG 57.314 37.500 0.00 0.21 0.00 4.18
5473 6747 7.568349 AGATAGCTTGTTTCATATCCTGAACA 58.432 34.615 0.00 0.00 43.54 3.18
5874 7148 0.994995 CGACCGATGAAACAGCAGAG 59.005 55.000 0.00 0.00 0.00 3.35
5890 7164 3.326006 AGCAGAGAACTCAAACCATCAGA 59.674 43.478 4.64 0.00 0.00 3.27
6068 7350 5.887214 AAGCTATTTTGTTTTCTGGGGTT 57.113 34.783 0.00 0.00 0.00 4.11
6146 7443 6.998673 AGGATTTTTATGATTTCCTCCCTACG 59.001 38.462 0.00 0.00 31.06 3.51
6181 7478 0.915364 ATCTTTGCTCTCCCCCAGAC 59.085 55.000 0.00 0.00 0.00 3.51
6385 7727 3.293337 CCCAAATGCCTGATTCAGATCA 58.707 45.455 15.36 12.12 39.92 2.92
6397 7739 4.474651 TGATTCAGATCAACCACTACCCAT 59.525 41.667 0.00 0.00 39.29 4.00
6471 7813 1.003118 GAGTGGATGGCAACTACACCA 59.997 52.381 13.39 3.89 41.06 4.17
6547 7889 5.833131 TGAGCAAACTTTTCCTGGAAAGTAT 59.167 36.000 20.25 8.65 46.23 2.12
6649 7991 7.870509 TCAGCTTTATATCTTTTGCTGTGAT 57.129 32.000 11.64 0.00 45.39 3.06
6916 8258 1.880027 ACAGCCGGAATCACAGAAAAC 59.120 47.619 5.05 0.00 0.00 2.43
6924 8266 5.220416 CCGGAATCACAGAAAACGAATAGAC 60.220 44.000 0.00 0.00 0.00 2.59
6984 8327 6.429692 TCCAAAAGTTCAGAGCGAAATAATCA 59.570 34.615 0.00 0.00 34.69 2.57
7017 8372 5.438761 ACATTACTTTCCACAAAGCACTC 57.561 39.130 0.00 0.00 42.66 3.51
7021 8376 1.532868 CTTTCCACAAAGCACTCGGAG 59.467 52.381 2.83 2.83 32.81 4.63
7025 8380 1.611673 CCACAAAGCACTCGGAGGATT 60.612 52.381 10.23 0.76 0.00 3.01
7052 8410 9.513906 TTTTTGGAATGATGAGACAACACTATA 57.486 29.630 0.00 0.00 0.00 1.31
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 3.606662 TAGAGCCTGCCGCCGATC 61.607 66.667 0.00 0.00 38.78 3.69
177 178 2.508891 CGAGATGACGAACAGCCGC 61.509 63.158 0.00 0.00 35.25 6.53
180 181 0.171455 ACTCCGAGATGACGAACAGC 59.829 55.000 1.33 0.00 35.09 4.40
195 196 2.359531 CACCTTCATCCTCTCGTACTCC 59.640 54.545 0.00 0.00 0.00 3.85
312 313 0.363512 CAACGACGACGATCTTGCTG 59.636 55.000 15.32 0.00 42.66 4.41
336 337 0.179073 CGATCACCACATGGAGACCC 60.179 60.000 4.53 0.00 37.62 4.46
393 394 4.243008 TCACAAGAACCGCCGCCA 62.243 61.111 0.00 0.00 0.00 5.69
462 463 0.319900 TCTGACTGCTTGAAGGCGTC 60.320 55.000 0.00 0.00 36.80 5.19
496 497 7.766738 GCTTTTATTCTAGAGGCAGAGTTACTT 59.233 37.037 0.00 0.00 0.00 2.24
497 498 7.125053 AGCTTTTATTCTAGAGGCAGAGTTACT 59.875 37.037 0.00 0.00 0.00 2.24
498 499 7.269316 AGCTTTTATTCTAGAGGCAGAGTTAC 58.731 38.462 0.00 0.00 0.00 2.50
527 532 2.079925 GAACAGGGCTTTGCAGACTAG 58.920 52.381 0.00 0.00 0.00 2.57
547 562 7.946655 ATGGTAATAACATACACAGACATCG 57.053 36.000 0.00 0.00 0.00 3.84
582 603 5.333952 GCAGATTATACAAGATGACAGCAGC 60.334 44.000 0.00 0.00 0.00 5.25
622 647 9.734620 CAGTTTTGAATTGTTTCTTCACTGATA 57.265 29.630 0.00 0.00 36.13 2.15
623 648 8.253113 ACAGTTTTGAATTGTTTCTTCACTGAT 58.747 29.630 13.66 0.00 36.78 2.90
642 667 8.782339 ACTACTTACAACAACAGTACAGTTTT 57.218 30.769 0.16 0.00 0.00 2.43
691 788 1.993370 GTCGGATCAGTCTTCGGTTTG 59.007 52.381 0.00 0.00 0.00 2.93
696 793 2.638556 ACAAGTCGGATCAGTCTTCG 57.361 50.000 2.67 2.80 0.00 3.79
733 855 5.220854 CCAAGGCGAGGATACAAATTTACAG 60.221 44.000 0.00 0.00 41.41 2.74
738 887 3.279434 GACCAAGGCGAGGATACAAATT 58.721 45.455 5.26 0.00 41.41 1.82
747 896 1.028905 TTTGTTTGACCAAGGCGAGG 58.971 50.000 0.00 0.00 0.00 4.63
750 899 2.577449 AAGTTTGTTTGACCAAGGCG 57.423 45.000 0.00 0.00 0.00 5.52
768 917 6.719370 ACAAATGGAGGCTGAATAGTACAAAA 59.281 34.615 0.00 0.00 0.00 2.44
770 919 5.647658 CACAAATGGAGGCTGAATAGTACAA 59.352 40.000 0.00 0.00 0.00 2.41
771 920 5.185454 CACAAATGGAGGCTGAATAGTACA 58.815 41.667 0.00 0.00 0.00 2.90
772 921 4.035675 GCACAAATGGAGGCTGAATAGTAC 59.964 45.833 0.00 0.00 0.00 2.73
773 922 4.199310 GCACAAATGGAGGCTGAATAGTA 58.801 43.478 0.00 0.00 0.00 1.82
774 923 3.019564 GCACAAATGGAGGCTGAATAGT 58.980 45.455 0.00 0.00 0.00 2.12
775 924 2.360165 GGCACAAATGGAGGCTGAATAG 59.640 50.000 0.00 0.00 0.00 1.73
783 932 2.133281 TCATCTGGCACAAATGGAGG 57.867 50.000 0.00 0.00 38.70 4.30
824 978 4.633175 CTGCTCGACTAGTAGGTAGATGA 58.367 47.826 0.00 0.00 34.50 2.92
835 989 0.028242 CCTACACGCTGCTCGACTAG 59.972 60.000 5.98 0.00 41.67 2.57
836 990 1.989966 GCCTACACGCTGCTCGACTA 61.990 60.000 5.98 0.00 41.67 2.59
837 991 2.878429 CCTACACGCTGCTCGACT 59.122 61.111 5.98 0.00 41.67 4.18
838 992 2.881352 GCCTACACGCTGCTCGAC 60.881 66.667 5.98 0.00 41.67 4.20
839 993 3.370231 TGCCTACACGCTGCTCGA 61.370 61.111 5.98 0.00 41.67 4.04
840 994 3.181967 GTGCCTACACGCTGCTCG 61.182 66.667 0.00 0.00 45.38 5.03
915 1071 4.641989 GTGGATTGATGTTAGCCACAAGAT 59.358 41.667 0.00 0.00 46.27 2.40
925 1081 6.068010 AGTTTCAGTTGGTGGATTGATGTTA 58.932 36.000 0.00 0.00 0.00 2.41
1016 1198 2.477189 CGGCAACTTCGTTTTCACAAGT 60.477 45.455 0.00 0.00 31.48 3.16
1028 1210 0.647925 GCTTCGATCTCGGCAACTTC 59.352 55.000 0.00 0.00 40.29 3.01
1036 1222 2.575111 CGCTGCTGCTTCGATCTCG 61.575 63.158 14.03 0.00 37.64 4.04
1118 1304 4.486503 CAGCAGGGAGAGCAGGGC 62.487 72.222 0.00 0.00 0.00 5.19
1354 1540 1.502527 AAATGGGGGCTTACACGGGA 61.503 55.000 0.00 0.00 0.00 5.14
1365 1551 1.002857 AGGGAGTTGAGAAATGGGGG 58.997 55.000 0.00 0.00 0.00 5.40
1401 1611 6.970484 AGAAATGGTGTGAGATTTGTTGTAC 58.030 36.000 0.00 0.00 0.00 2.90
1402 1612 7.424803 CAAGAAATGGTGTGAGATTTGTTGTA 58.575 34.615 0.00 0.00 37.73 2.41
1403 1613 6.275335 CAAGAAATGGTGTGAGATTTGTTGT 58.725 36.000 0.00 0.00 37.73 3.32
1404 1614 5.176223 GCAAGAAATGGTGTGAGATTTGTTG 59.824 40.000 0.00 0.00 41.92 3.33
1459 1669 5.892776 CAACACAAATATGTTTTGCAGACG 58.107 37.500 3.60 0.00 40.89 4.18
1479 1692 4.209703 CACACACAAGAAATCCATTGCAAC 59.790 41.667 0.00 0.00 0.00 4.17
1536 1753 0.734253 CGAAGAACTGGCTCACCTCG 60.734 60.000 0.00 0.00 36.63 4.63
1554 1771 1.566018 GGAGACGCCTTCACCAAACG 61.566 60.000 0.00 0.00 35.12 3.60
1614 1834 3.363182 CGTCATAGCAGTAGTAGACGCTC 60.363 52.174 0.00 0.00 41.59 5.03
1641 1861 4.889409 AGGTCTTCATCTTGTTCTTTTGCA 59.111 37.500 0.00 0.00 0.00 4.08
1644 1864 7.056635 TCTTGAGGTCTTCATCTTGTTCTTTT 58.943 34.615 0.00 0.00 35.27 2.27
1645 1865 6.595682 TCTTGAGGTCTTCATCTTGTTCTTT 58.404 36.000 0.00 0.00 35.27 2.52
1693 1913 2.398754 TCCAACACAGAGGAGAGGAA 57.601 50.000 0.00 0.00 0.00 3.36
1695 1915 2.093235 GGAATCCAACACAGAGGAGAGG 60.093 54.545 0.00 0.00 37.34 3.69
1726 1946 9.918630 GTATTAACAACTACTACAGAGGAAACA 57.081 33.333 0.00 0.00 0.00 2.83
1744 1964 9.577110 CAAGGTAATGAACGAGTAGTATTAACA 57.423 33.333 0.00 0.00 28.20 2.41
1748 1968 9.498176 AAAACAAGGTAATGAACGAGTAGTATT 57.502 29.630 0.00 0.00 0.00 1.89
1749 1969 9.148104 GAAAACAAGGTAATGAACGAGTAGTAT 57.852 33.333 0.00 0.00 0.00 2.12
1750 1970 7.599998 GGAAAACAAGGTAATGAACGAGTAGTA 59.400 37.037 0.00 0.00 0.00 1.82
1751 1971 6.426025 GGAAAACAAGGTAATGAACGAGTAGT 59.574 38.462 0.00 0.00 0.00 2.73
1752 1972 6.128363 GGGAAAACAAGGTAATGAACGAGTAG 60.128 42.308 0.00 0.00 0.00 2.57
1755 1975 4.760204 AGGGAAAACAAGGTAATGAACGAG 59.240 41.667 0.00 0.00 0.00 4.18
1757 1977 5.447624 AAGGGAAAACAAGGTAATGAACG 57.552 39.130 0.00 0.00 0.00 3.95
1767 1987 7.148340 TGCACATAAAAACAAAGGGAAAACAAG 60.148 33.333 0.00 0.00 0.00 3.16
1777 1997 7.847078 CAGTCAACAATGCACATAAAAACAAAG 59.153 33.333 0.00 0.00 0.00 2.77
1781 2001 6.697019 AGACAGTCAACAATGCACATAAAAAC 59.303 34.615 2.66 0.00 0.00 2.43
1786 2006 8.962884 ATATTAGACAGTCAACAATGCACATA 57.037 30.769 2.66 0.00 0.00 2.29
1787 2007 7.870509 ATATTAGACAGTCAACAATGCACAT 57.129 32.000 2.66 0.00 0.00 3.21
1789 2009 8.970691 AAAATATTAGACAGTCAACAATGCAC 57.029 30.769 2.66 0.00 0.00 4.57
1820 2054 5.243207 AGGAGTATTTGTTACCTGAAACCG 58.757 41.667 0.00 0.00 0.00 4.44
1982 2216 0.880441 CATCACGCCACATTTGTCCA 59.120 50.000 0.00 0.00 0.00 4.02
2019 2254 7.096551 AGCAAACAAAGTAATTCACAACTTGT 58.903 30.769 0.00 0.00 36.12 3.16
2036 2286 8.442384 GTTTCATTTGAGAAAAAGAGCAAACAA 58.558 29.630 0.00 0.00 39.05 2.83
2046 2296 8.738106 AGCCAAAAATGTTTCATTTGAGAAAAA 58.262 25.926 8.20 0.00 39.05 1.94
2105 2362 4.225042 ACACTATTAGGTGTCAGCCATCAA 59.775 41.667 0.00 0.00 45.94 2.57
2137 2401 8.649841 CCAAGTAGACAATTTGCATACAATTTG 58.350 33.333 10.40 10.40 45.82 2.32
2138 2402 8.367156 ACCAAGTAGACAATTTGCATACAATTT 58.633 29.630 11.84 0.00 35.21 1.82
2139 2403 7.895759 ACCAAGTAGACAATTTGCATACAATT 58.104 30.769 11.84 0.00 35.21 2.32
2140 2404 7.394359 AGACCAAGTAGACAATTTGCATACAAT 59.606 33.333 11.84 0.00 35.21 2.71
2141 2405 6.714810 AGACCAAGTAGACAATTTGCATACAA 59.285 34.615 11.84 0.00 0.00 2.41
2142 2406 6.237901 AGACCAAGTAGACAATTTGCATACA 58.762 36.000 11.84 0.00 0.00 2.29
2143 2407 6.743575 AGACCAAGTAGACAATTTGCATAC 57.256 37.500 0.00 0.38 0.00 2.39
2175 2440 9.574516 GGGACCAGATATAACAAGTTCAATTAT 57.425 33.333 0.00 0.00 0.00 1.28
2181 2446 4.100498 TCCGGGACCAGATATAACAAGTTC 59.900 45.833 0.00 0.00 0.00 3.01
2182 2447 4.035112 TCCGGGACCAGATATAACAAGTT 58.965 43.478 0.00 0.00 0.00 2.66
2195 2461 3.006728 GTGGTGGATCCGGGACCA 61.007 66.667 16.58 16.58 39.52 4.02
2196 2462 3.793888 GGTGGTGGATCCGGGACC 61.794 72.222 11.97 11.97 39.52 4.46
2197 2463 1.921869 AATGGTGGTGGATCCGGGAC 61.922 60.000 7.39 2.75 39.52 4.46
2198 2464 0.326713 TAATGGTGGTGGATCCGGGA 60.327 55.000 7.39 0.00 39.52 5.14
2199 2465 0.108585 CTAATGGTGGTGGATCCGGG 59.891 60.000 7.39 0.00 39.52 5.73
2200 2466 0.837272 ACTAATGGTGGTGGATCCGG 59.163 55.000 7.39 0.00 39.52 5.14
2201 2467 1.202651 GGACTAATGGTGGTGGATCCG 60.203 57.143 7.39 0.00 39.52 4.18
2202 2468 1.843851 TGGACTAATGGTGGTGGATCC 59.156 52.381 4.20 4.20 0.00 3.36
2309 2579 5.459107 CCGCAATAGCCACGTATAGATTATC 59.541 44.000 0.00 0.00 37.52 1.75
2347 2617 4.675408 GCTGCAGTAAAATAGTTCCCAAGC 60.675 45.833 16.64 0.00 0.00 4.01
2482 2752 2.227388 CCAGAACAGGAGCATTGAACAC 59.773 50.000 0.00 0.00 0.00 3.32
2539 2809 6.910995 ACTGTGTATGAGGATAGCGTTATAC 58.089 40.000 8.23 8.23 34.10 1.47
2558 2986 9.605275 TGATCTAAAAATATCTGAAGGACTGTG 57.395 33.333 0.00 0.00 0.00 3.66
2603 3031 9.850628 CAAGAATCAAATGATCAACACAGTAAT 57.149 29.630 0.00 0.00 32.75 1.89
2606 3034 7.514784 TCAAGAATCAAATGATCAACACAGT 57.485 32.000 0.00 0.00 32.75 3.55
2728 3157 8.934507 TTACAAACTTCGATGTTTTTCCAAAT 57.065 26.923 22.61 8.49 37.98 2.32
2729 3158 8.244802 TCTTACAAACTTCGATGTTTTTCCAAA 58.755 29.630 22.61 13.05 37.98 3.28
2750 3181 8.847196 GGGGTGAAAATTGGAATATACTCTTAC 58.153 37.037 0.00 0.00 0.00 2.34
2812 3243 6.712547 AGGGATAAACTACAGCAAGATTATGC 59.287 38.462 6.68 6.68 46.78 3.14
2843 3274 6.540914 CGGGGTAAAAGCTATCAAAACATCTA 59.459 38.462 0.00 0.00 0.00 1.98
2847 3278 4.400120 ACGGGGTAAAAGCTATCAAAACA 58.600 39.130 0.00 0.00 0.00 2.83
2848 3279 5.381174 AACGGGGTAAAAGCTATCAAAAC 57.619 39.130 0.00 0.00 0.00 2.43
2855 3286 6.897706 AATAACAAAACGGGGTAAAAGCTA 57.102 33.333 0.00 0.00 0.00 3.32
2859 3290 6.324770 TGGGTAAATAACAAAACGGGGTAAAA 59.675 34.615 0.00 0.00 0.00 1.52
2864 3295 3.573110 TGTGGGTAAATAACAAAACGGGG 59.427 43.478 0.00 0.00 0.00 5.73
2872 3303 5.533154 CCTTGTCAAGTGTGGGTAAATAACA 59.467 40.000 11.61 0.00 0.00 2.41
2882 3313 1.676006 GGTCAACCTTGTCAAGTGTGG 59.324 52.381 11.61 6.97 0.00 4.17
2898 3329 1.904771 CCACGCCATCCTAAGGTCA 59.095 57.895 0.00 0.00 0.00 4.02
2910 3342 1.450312 AGTCAATAGCTGCCACGCC 60.450 57.895 0.00 0.00 0.00 5.68
2911 3343 1.709147 CCAGTCAATAGCTGCCACGC 61.709 60.000 0.00 0.00 32.93 5.34
2912 3344 0.108186 TCCAGTCAATAGCTGCCACG 60.108 55.000 0.00 0.00 32.93 4.94
2913 3345 1.339055 TGTCCAGTCAATAGCTGCCAC 60.339 52.381 0.00 0.00 32.93 5.01
2914 3346 0.983467 TGTCCAGTCAATAGCTGCCA 59.017 50.000 0.00 0.00 32.93 4.92
2915 3347 1.740025 GTTGTCCAGTCAATAGCTGCC 59.260 52.381 0.00 0.00 32.93 4.85
2916 3348 2.675348 GAGTTGTCCAGTCAATAGCTGC 59.325 50.000 0.00 0.00 32.93 5.25
2917 3349 2.926200 CGAGTTGTCCAGTCAATAGCTG 59.074 50.000 0.00 0.00 0.00 4.24
2918 3350 2.093973 CCGAGTTGTCCAGTCAATAGCT 60.094 50.000 0.00 0.00 0.00 3.32
2919 3351 2.094182 TCCGAGTTGTCCAGTCAATAGC 60.094 50.000 0.00 0.00 0.00 2.97
2920 3352 3.868757 TCCGAGTTGTCCAGTCAATAG 57.131 47.619 0.00 0.00 0.00 1.73
2921 3353 6.127168 ACAATATCCGAGTTGTCCAGTCAATA 60.127 38.462 0.00 0.00 33.53 1.90
2922 3354 5.118990 CAATATCCGAGTTGTCCAGTCAAT 58.881 41.667 0.00 0.00 0.00 2.57
2923 3355 4.020573 ACAATATCCGAGTTGTCCAGTCAA 60.021 41.667 0.00 0.00 33.53 3.18
2924 3356 3.513912 ACAATATCCGAGTTGTCCAGTCA 59.486 43.478 0.00 0.00 33.53 3.41
2925 3357 4.124851 ACAATATCCGAGTTGTCCAGTC 57.875 45.455 0.00 0.00 33.53 3.51
2926 3358 5.871396 ATACAATATCCGAGTTGTCCAGT 57.129 39.130 5.48 0.00 39.18 4.00
2927 3359 6.516718 AGAATACAATATCCGAGTTGTCCAG 58.483 40.000 5.48 0.00 39.18 3.86
2928 3360 6.479972 AGAATACAATATCCGAGTTGTCCA 57.520 37.500 5.48 0.00 39.18 4.02
2929 3361 7.254795 CCAAAGAATACAATATCCGAGTTGTCC 60.255 40.741 5.48 0.00 39.18 4.02
2930 3362 7.494625 TCCAAAGAATACAATATCCGAGTTGTC 59.505 37.037 5.48 0.00 39.18 3.18
2931 3363 7.335627 TCCAAAGAATACAATATCCGAGTTGT 58.664 34.615 7.03 7.03 41.16 3.32
2932 3364 7.710907 TCTCCAAAGAATACAATATCCGAGTTG 59.289 37.037 0.00 0.00 0.00 3.16
2933 3365 7.792032 TCTCCAAAGAATACAATATCCGAGTT 58.208 34.615 0.00 0.00 0.00 3.01
2934 3366 7.361457 TCTCCAAAGAATACAATATCCGAGT 57.639 36.000 0.00 0.00 0.00 4.18
2935 3367 7.875041 ACATCTCCAAAGAATACAATATCCGAG 59.125 37.037 0.00 0.00 34.49 4.63
2936 3368 7.735917 ACATCTCCAAAGAATACAATATCCGA 58.264 34.615 0.00 0.00 34.49 4.55
2937 3369 7.969536 ACATCTCCAAAGAATACAATATCCG 57.030 36.000 0.00 0.00 34.49 4.18
2941 3373 9.878667 TTCGTTACATCTCCAAAGAATACAATA 57.121 29.630 0.00 0.00 34.49 1.90
2942 3374 8.786826 TTCGTTACATCTCCAAAGAATACAAT 57.213 30.769 0.00 0.00 34.49 2.71
2943 3375 8.786826 ATTCGTTACATCTCCAAAGAATACAA 57.213 30.769 0.00 0.00 33.16 2.41
3109 4367 2.162264 TGACACGGTGGACCCATATA 57.838 50.000 13.48 0.00 0.00 0.86
3165 4423 7.392113 CACATTTTACCCTTAGTTGTACCATGA 59.608 37.037 0.00 0.00 0.00 3.07
3177 4436 3.420300 TCGTGCCACATTTTACCCTTA 57.580 42.857 0.00 0.00 0.00 2.69
3242 4501 8.995027 ATAGCATATTCCACATTTTACCTTGA 57.005 30.769 0.00 0.00 0.00 3.02
3283 4543 4.853924 ACAAAAAGCCAACCATAGAGTG 57.146 40.909 0.00 0.00 0.00 3.51
3285 4545 7.708752 TGTTTAAACAAAAAGCCAACCATAGAG 59.291 33.333 18.54 0.00 35.67 2.43
3287 4547 7.778470 TGTTTAAACAAAAAGCCAACCATAG 57.222 32.000 18.54 0.00 35.67 2.23
3290 4550 8.616076 CATAATGTTTAAACAAAAAGCCAACCA 58.384 29.630 23.97 0.00 43.03 3.67
3291 4551 8.616942 ACATAATGTTTAAACAAAAAGCCAACC 58.383 29.630 23.97 0.00 43.03 3.77
3292 4552 9.995957 AACATAATGTTTAAACAAAAAGCCAAC 57.004 25.926 23.97 0.00 43.03 3.77
3339 4600 3.568007 ACTTAACGGCAATGAAAAGCAGA 59.432 39.130 0.00 0.00 0.00 4.26
3372 4633 6.948589 TGCACCATATACTAACCTTGTGTAA 58.051 36.000 0.00 0.00 0.00 2.41
3388 4649 7.450014 TCTTCTTTACTTTCCATTTGCACCATA 59.550 33.333 0.00 0.00 0.00 2.74
3480 4743 1.272490 CCAACGTCCTGAGCTAAGACA 59.728 52.381 0.00 0.00 0.00 3.41
3557 4820 2.224159 TGTCTGGCCTGAAGGGGAC 61.224 63.158 14.68 1.90 35.18 4.46
3558 4821 2.206900 TGTCTGGCCTGAAGGGGA 59.793 61.111 14.68 0.00 35.18 4.81
3595 4858 1.143620 GCCGCAGCTTCTCTCTGAT 59.856 57.895 0.00 0.00 35.50 2.90
3610 4873 2.243957 TCACTGACTGCGTTTGCCG 61.244 57.895 0.00 0.00 41.78 5.69
3612 4875 0.657840 AAGTCACTGACTGCGTTTGC 59.342 50.000 12.59 0.00 42.59 3.68
3615 4878 1.160329 GCCAAGTCACTGACTGCGTT 61.160 55.000 12.59 0.00 42.59 4.84
3616 4879 1.595382 GCCAAGTCACTGACTGCGT 60.595 57.895 12.59 0.00 42.59 5.24
3661 4924 6.016527 TGCAGATGATCAGAGAAAATTATGCC 60.017 38.462 0.09 0.00 0.00 4.40
3662 4925 6.967135 TGCAGATGATCAGAGAAAATTATGC 58.033 36.000 0.09 1.38 0.00 3.14
3663 4926 7.539022 GCATGCAGATGATCAGAGAAAATTATG 59.461 37.037 14.21 0.00 0.00 1.90
3664 4927 7.230712 TGCATGCAGATGATCAGAGAAAATTAT 59.769 33.333 18.46 0.00 0.00 1.28
3666 4929 5.359860 TGCATGCAGATGATCAGAGAAAATT 59.640 36.000 18.46 0.00 0.00 1.82
3667 4930 4.887655 TGCATGCAGATGATCAGAGAAAAT 59.112 37.500 18.46 0.00 0.00 1.82
3668 4931 4.266714 TGCATGCAGATGATCAGAGAAAA 58.733 39.130 18.46 0.00 0.00 2.29
3670 4933 3.553828 TGCATGCAGATGATCAGAGAA 57.446 42.857 18.46 0.00 0.00 2.87
3671 4934 3.553828 TTGCATGCAGATGATCAGAGA 57.446 42.857 21.50 0.00 0.00 3.10
3672 4935 3.189495 GGATTGCATGCAGATGATCAGAG 59.811 47.826 24.34 0.00 0.00 3.35
3673 4936 3.146847 GGATTGCATGCAGATGATCAGA 58.853 45.455 24.34 8.57 0.00 3.27
3674 4937 2.884639 TGGATTGCATGCAGATGATCAG 59.115 45.455 24.34 0.00 0.00 2.90
3675 4938 2.938838 TGGATTGCATGCAGATGATCA 58.061 42.857 24.34 14.82 0.00 2.92
3676 4939 4.521130 AATGGATTGCATGCAGATGATC 57.479 40.909 21.50 19.43 32.88 2.92
3677 4940 4.503123 CCAAATGGATTGCATGCAGATGAT 60.503 41.667 21.50 11.60 37.73 2.45
3678 4941 3.181470 CCAAATGGATTGCATGCAGATGA 60.181 43.478 21.50 6.34 37.73 2.92
3679 4942 3.130633 CCAAATGGATTGCATGCAGATG 58.869 45.455 21.50 12.24 37.73 2.90
3680 4943 2.769663 ACCAAATGGATTGCATGCAGAT 59.230 40.909 21.50 16.56 37.73 2.90
3681 4944 2.181125 ACCAAATGGATTGCATGCAGA 58.819 42.857 21.50 12.42 37.73 4.26
3682 4945 2.684001 ACCAAATGGATTGCATGCAG 57.316 45.000 21.50 8.35 37.73 4.41
3683 4946 3.244457 TGAAACCAAATGGATTGCATGCA 60.244 39.130 18.46 18.46 37.73 3.96
3684 4947 3.336468 TGAAACCAAATGGATTGCATGC 58.664 40.909 11.82 11.82 37.73 4.06
3685 4948 4.201871 GCATGAAACCAAATGGATTGCATG 60.202 41.667 20.28 20.28 37.85 4.06
3686 4949 3.942748 GCATGAAACCAAATGGATTGCAT 59.057 39.130 6.42 4.70 37.73 3.96
3687 4950 3.336468 GCATGAAACCAAATGGATTGCA 58.664 40.909 6.42 2.52 37.73 4.08
3688 4951 2.679336 GGCATGAAACCAAATGGATTGC 59.321 45.455 6.42 1.54 37.73 3.56
3689 4952 3.936453 CAGGCATGAAACCAAATGGATTG 59.064 43.478 6.42 0.00 38.94 2.67
3690 4953 3.054948 CCAGGCATGAAACCAAATGGATT 60.055 43.478 6.42 0.00 38.94 3.01
3691 4954 2.502538 CCAGGCATGAAACCAAATGGAT 59.497 45.455 6.42 0.00 38.94 3.41
3692 4955 1.901159 CCAGGCATGAAACCAAATGGA 59.099 47.619 6.42 0.00 38.94 3.41
3693 4956 1.065998 CCCAGGCATGAAACCAAATGG 60.066 52.381 0.00 0.00 42.17 3.16
3694 4957 1.901159 TCCCAGGCATGAAACCAAATG 59.099 47.619 0.00 0.00 0.00 2.32
3695 4958 2.181975 CTCCCAGGCATGAAACCAAAT 58.818 47.619 0.00 0.00 0.00 2.32
4880 6143 4.468153 ACAAAGCCTTTAGTCCCAAACAAA 59.532 37.500 0.00 0.00 0.00 2.83
4942 6207 4.755411 TCATCCTGTCGTAAAGGACAATC 58.245 43.478 6.91 0.00 46.51 2.67
4943 6208 4.223032 ACTCATCCTGTCGTAAAGGACAAT 59.777 41.667 6.91 0.00 46.51 2.71
4997 6262 4.930963 TGAATTCTGTGTTTGAAATGCGT 58.069 34.783 7.05 0.00 0.00 5.24
5068 6333 6.710295 TCTTGAGCAATGCTTACTTGTTTAGA 59.290 34.615 9.91 0.00 39.88 2.10
5073 6338 5.772825 TTTCTTGAGCAATGCTTACTTGT 57.227 34.783 9.91 0.00 39.88 3.16
5133 6400 7.093354 TGATAACAGAGTCAAGATGTTCACTC 58.907 38.462 0.00 0.00 38.14 3.51
5137 6404 7.897575 AACTGATAACAGAGTCAAGATGTTC 57.102 36.000 7.05 0.00 46.03 3.18
5144 6411 5.348724 GCGATGAAACTGATAACAGAGTCAA 59.651 40.000 7.05 0.00 46.03 3.18
5150 6417 5.203358 TTTCGCGATGAAACTGATAACAG 57.797 39.130 10.88 0.00 41.59 3.16
5284 6558 7.819415 TGTCAGTTGTTTGATCATAGTTCTAGG 59.181 37.037 0.00 0.00 0.00 3.02
5308 6582 6.848451 ACAGTCGTTTCAAATTTACAACTGT 58.152 32.000 9.50 9.50 39.80 3.55
5309 6583 8.120465 AGTACAGTCGTTTCAAATTTACAACTG 58.880 33.333 8.47 8.47 38.02 3.16
5525 6799 2.224305 CCCTACTTAAGATCAAGGGCCG 60.224 54.545 10.09 0.00 40.51 6.13
5874 7148 8.567948 TCTTTGTAATTCTGATGGTTTGAGTTC 58.432 33.333 0.00 0.00 0.00 3.01
5890 7164 2.241176 TCCCTCCGCCATCTTTGTAATT 59.759 45.455 0.00 0.00 0.00 1.40
6068 7350 5.868454 TGTGTCTTTCCATTGATCTCAGAA 58.132 37.500 0.00 0.00 0.00 3.02
6146 7443 4.032786 GCAAAGATCACACAACACCAAAAC 59.967 41.667 0.00 0.00 0.00 2.43
6181 7478 6.332504 ACTTGCTATCGAGTAAATTTGTCG 57.667 37.500 15.15 15.15 35.20 4.35
6346 7688 5.413309 TTGGGGCTAACAATTTACCATTG 57.587 39.130 0.00 0.00 35.29 2.82
6385 7727 0.035439 CGCTTCCATGGGTAGTGGTT 60.035 55.000 13.02 0.00 37.96 3.67
6397 7739 4.373116 GGCCGACAGACGCTTCCA 62.373 66.667 0.00 0.00 41.07 3.53
6456 7798 0.037590 TGGGTGGTGTAGTTGCCATC 59.962 55.000 0.00 0.00 37.09 3.51
6471 7813 4.881850 GTCGAATATGAAAATCTGGTGGGT 59.118 41.667 0.00 0.00 0.00 4.51
6547 7889 5.582269 GCATGTCTGCTGATCAAACTACTTA 59.418 40.000 0.00 0.00 45.32 2.24
6573 7915 8.284945 AGCATTTCATGTGTCTGTATATGTTT 57.715 30.769 0.00 0.00 0.00 2.83
6607 7949 4.639310 AGCTGAAGGATGCAAGATTACAAG 59.361 41.667 0.00 0.00 0.00 3.16
6724 8066 9.113838 GTGATTTCTACCATATGTCAAACATCT 57.886 33.333 1.24 0.00 39.88 2.90
6725 8067 9.113838 AGTGATTTCTACCATATGTCAAACATC 57.886 33.333 1.24 0.00 39.88 3.06
6727 8069 9.952030 TTAGTGATTTCTACCATATGTCAAACA 57.048 29.630 1.24 0.00 0.00 2.83
6768 8110 2.703007 ACTGAGCTGACTGGTTTCTTCT 59.297 45.455 0.00 0.00 0.00 2.85
6916 8258 3.545624 CCTCCAGTTACGACGTCTATTCG 60.546 52.174 14.70 2.67 42.36 3.34
6984 8327 8.514330 TGTGGAAAGTAATGTTCTACTGTTTT 57.486 30.769 2.97 0.00 37.37 2.43
7031 8386 9.330063 TCAATTATAGTGTTGTCTCATCATTCC 57.670 33.333 0.00 0.00 0.00 3.01
7034 8389 8.834465 GCTTCAATTATAGTGTTGTCTCATCAT 58.166 33.333 0.00 0.00 0.00 2.45
7035 8390 7.823799 TGCTTCAATTATAGTGTTGTCTCATCA 59.176 33.333 0.00 0.00 0.00 3.07


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.