Multiple sequence alignment - TraesCS2B01G527600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G527600 chr2B 100.000 8138 0 0 1 8138 722086925 722078788 0.000000e+00 15029.0
1 TraesCS2B01G527600 chr2B 90.476 189 10 7 5392 5575 608226886 608226701 8.160000e-60 243.0
2 TraesCS2B01G527600 chr2B 89.216 102 9 2 6652 6753 36434981 36434882 8.570000e-25 126.0
3 TraesCS2B01G527600 chr2D 95.891 3894 94 23 3037 6903 594541217 594537363 0.000000e+00 6244.0
4 TraesCS2B01G527600 chr2D 93.841 1656 61 13 1288 2914 594543342 594541699 0.000000e+00 2455.0
5 TraesCS2B01G527600 chr2D 93.094 724 35 8 9 726 594544758 594544044 0.000000e+00 1046.0
6 TraesCS2B01G527600 chr2D 89.123 616 43 11 6915 7513 594537379 594536771 0.000000e+00 745.0
7 TraesCS2B01G527600 chr2D 90.617 405 26 6 7538 7937 441769638 441769241 2.010000e-145 527.0
8 TraesCS2B01G527600 chr2D 85.822 529 21 20 792 1275 594544015 594543496 5.630000e-141 512.0
9 TraesCS2B01G527600 chr2D 80.303 396 60 13 6230 6618 465956972 465956588 4.810000e-72 283.0
10 TraesCS2B01G527600 chr2D 92.000 200 15 1 7940 8138 441769269 441769070 6.220000e-71 279.0
11 TraesCS2B01G527600 chr2D 95.062 162 6 2 5392 5551 624365934 624365773 3.770000e-63 254.0
12 TraesCS2B01G527600 chr2D 92.941 170 10 2 5392 5559 134301649 134301480 6.310000e-61 246.0
13 TraesCS2B01G527600 chr2D 91.954 174 12 2 5391 5562 87407363 87407536 8.160000e-60 243.0
14 TraesCS2B01G527600 chr2D 100.000 28 0 0 3046 3073 388833945 388833972 1.500000e-02 52.8
15 TraesCS2B01G527600 chr2A 93.527 1514 55 11 1445 2916 729165597 729164085 0.000000e+00 2213.0
16 TraesCS2B01G527600 chr2A 94.713 1305 54 4 3046 4340 729163418 729162119 0.000000e+00 2013.0
17 TraesCS2B01G527600 chr2A 95.793 1046 32 6 4339 5380 729162004 729160967 0.000000e+00 1677.0
18 TraesCS2B01G527600 chr2A 89.577 1324 69 23 9 1275 729167313 729166002 0.000000e+00 1616.0
19 TraesCS2B01G527600 chr2A 94.409 948 30 12 5548 6490 729160965 729160036 0.000000e+00 1435.0
20 TraesCS2B01G527600 chr2A 90.759 606 38 6 6921 7513 729159579 729158979 0.000000e+00 793.0
21 TraesCS2B01G527600 chr2A 90.678 472 25 12 6435 6902 729160027 729159571 1.940000e-170 610.0
22 TraesCS2B01G527600 chr2A 87.654 162 16 3 1288 1446 729165840 729165680 1.390000e-42 185.0
23 TraesCS2B01G527600 chr2A 89.216 102 9 2 6652 6753 97566611 97566512 8.570000e-25 126.0
24 TraesCS2B01G527600 chr1D 92.020 401 21 6 7541 7937 258349992 258349599 3.320000e-153 553.0
25 TraesCS2B01G527600 chr1D 91.272 401 25 6 7541 7937 98830445 98830839 9.290000e-149 538.0
26 TraesCS2B01G527600 chr1D 90.977 399 24 6 7543 7937 98828186 98828576 2.010000e-145 527.0
27 TraesCS2B01G527600 chr1D 92.500 200 14 1 7940 8138 98828548 98828747 1.340000e-72 285.0
28 TraesCS2B01G527600 chr1D 92.500 200 14 1 7940 8138 98830811 98831010 1.340000e-72 285.0
29 TraesCS2B01G527600 chr1D 93.373 166 7 4 5392 5556 451226900 451226738 8.160000e-60 243.0
30 TraesCS2B01G527600 chr1D 87.705 122 15 0 451 572 333277716 333277595 8.510000e-30 143.0
31 TraesCS2B01G527600 chr1D 87.218 133 8 4 305 433 334608055 334607928 8.510000e-30 143.0
32 TraesCS2B01G527600 chr1D 81.818 121 13 1 463 574 334607934 334607814 8.700000e-15 93.5
33 TraesCS2B01G527600 chr1D 100.000 31 0 0 3042 3072 12291442 12291472 3.170000e-04 58.4
34 TraesCS2B01G527600 chr1D 100.000 31 0 0 3042 3072 160525366 160525396 3.170000e-04 58.4
35 TraesCS2B01G527600 chr1D 100.000 28 0 0 3046 3073 491802473 491802500 1.500000e-02 52.8
36 TraesCS2B01G527600 chr1A 92.020 401 21 6 7541 7937 540328834 540328441 3.320000e-153 553.0
37 TraesCS2B01G527600 chr1A 83.761 351 22 11 5547 5887 118275703 118276028 4.770000e-77 300.0
38 TraesCS2B01G527600 chr1A 92.537 134 9 1 3182 3315 118271174 118271306 3.000000e-44 191.0
39 TraesCS2B01G527600 chr1A 85.000 140 12 3 298 433 75388639 75388505 5.120000e-27 134.0
40 TraesCS2B01G527600 chr1A 88.660 97 11 0 463 559 75388511 75388415 1.430000e-22 119.0
41 TraesCS2B01G527600 chr4D 90.773 401 26 6 7541 7937 36535500 36535107 7.240000e-145 525.0
42 TraesCS2B01G527600 chr4D 90.123 405 29 8 7537 7937 448524496 448524099 4.350000e-142 516.0
43 TraesCS2B01G527600 chr4D 92.442 172 11 2 5392 5561 435010530 435010359 2.270000e-60 244.0
44 TraesCS2B01G527600 chr3A 90.370 405 27 8 7541 7937 108917719 108917319 9.360000e-144 521.0
45 TraesCS2B01G527600 chr3A 92.500 200 14 1 7940 8138 561095567 561095368 1.340000e-72 285.0
46 TraesCS2B01G527600 chr3A 79.597 397 60 14 6230 6618 646304387 646304770 1.740000e-66 265.0
47 TraesCS2B01G527600 chr6D 90.524 401 25 5 7541 7937 211665830 211666221 1.210000e-142 518.0
48 TraesCS2B01G527600 chr6D 84.434 212 24 2 363 574 340969154 340968952 4.980000e-47 200.0
49 TraesCS2B01G527600 chr4B 84.227 317 33 13 4780 5087 578033383 578033075 7.990000e-75 292.0
50 TraesCS2B01G527600 chr4B 92.000 200 15 1 7940 8138 527283907 527284106 6.220000e-71 279.0
51 TraesCS2B01G527600 chr6A 92.000 200 15 1 7940 8138 294640158 294640357 6.220000e-71 279.0
52 TraesCS2B01G527600 chr6A 79.545 396 58 14 6230 6618 61180132 61180511 2.250000e-65 261.0
53 TraesCS2B01G527600 chr6A 90.196 102 8 2 6652 6753 38873811 38873712 1.840000e-26 132.0
54 TraesCS2B01G527600 chr6A 100.000 28 0 0 3045 3072 35267447 35267474 1.500000e-02 52.8
55 TraesCS2B01G527600 chr6A 100.000 28 0 0 3045 3072 38142631 38142658 1.500000e-02 52.8
56 TraesCS2B01G527600 chr6A 100.000 28 0 0 3046 3073 189986591 189986618 1.500000e-02 52.8
57 TraesCS2B01G527600 chr6A 86.275 51 4 3 3023 3072 609587274 609587322 1.500000e-02 52.8
58 TraesCS2B01G527600 chr1B 92.000 200 15 1 7940 8138 270317251 270317052 6.220000e-71 279.0
59 TraesCS2B01G527600 chr1B 89.623 106 8 3 6649 6753 666842032 666842135 1.840000e-26 132.0
60 TraesCS2B01G527600 chr5B 91.584 202 14 1 7940 8138 75904828 75904627 8.050000e-70 276.0
61 TraesCS2B01G527600 chr5B 83.154 279 34 5 298 572 166651373 166651642 8.160000e-60 243.0
62 TraesCS2B01G527600 chr5B 91.429 105 7 2 6649 6753 339622967 339623069 8.510000e-30 143.0
63 TraesCS2B01G527600 chr5B 87.838 74 6 1 3993 4066 480159566 480159636 5.230000e-12 84.2
64 TraesCS2B01G527600 chr3D 91.500 200 16 1 7940 8138 497493661 497493462 2.890000e-69 274.0
65 TraesCS2B01G527600 chr3D 92.529 174 11 2 5391 5562 459077431 459077258 1.750000e-61 248.0
66 TraesCS2B01G527600 chr3D 100.000 28 0 0 3045 3072 313292647 313292674 1.500000e-02 52.8
67 TraesCS2B01G527600 chr7A 79.798 396 60 14 6230 6618 9404125 9404507 3.740000e-68 270.0
68 TraesCS2B01G527600 chr7A 93.452 168 7 3 5390 5555 544895903 544896068 6.310000e-61 246.0
69 TraesCS2B01G527600 chr7A 90.991 111 6 2 297 403 217752719 217752829 6.580000e-31 147.0
70 TraesCS2B01G527600 chr7A 88.182 110 13 0 463 572 217752848 217752957 1.840000e-26 132.0
71 TraesCS2B01G527600 chr5A 78.841 397 61 15 6230 6618 378671108 378671489 6.310000e-61 246.0
72 TraesCS2B01G527600 chr5A 86.429 140 10 3 298 433 245500908 245501042 2.370000e-30 145.0
73 TraesCS2B01G527600 chr5A 85.816 141 11 3 297 433 329387625 329387490 3.060000e-29 141.0
74 TraesCS2B01G527600 chr5A 88.182 110 13 0 463 572 245501036 245501145 1.840000e-26 132.0
75 TraesCS2B01G527600 chr5A 88.182 110 13 0 463 572 329387496 329387387 1.840000e-26 132.0
76 TraesCS2B01G527600 chr5A 87.179 117 11 2 297 409 109659326 109659442 6.630000e-26 130.0
77 TraesCS2B01G527600 chr5A 88.073 109 13 0 464 572 109659456 109659564 6.630000e-26 130.0
78 TraesCS2B01G527600 chr6B 84.956 226 29 5 6394 6618 301623791 301624012 2.960000e-54 224.0
79 TraesCS2B01G527600 chr7D 87.705 122 15 0 451 572 625509646 625509525 8.510000e-30 143.0
80 TraesCS2B01G527600 chr7D 88.889 117 9 3 297 409 366721428 366721312 3.060000e-29 141.0
81 TraesCS2B01G527600 chr7D 87.273 110 14 0 463 572 366721299 366721190 8.570000e-25 126.0
82 TraesCS2B01G527600 chr4A 87.218 133 8 3 305 433 140710710 140710837 8.510000e-30 143.0
83 TraesCS2B01G527600 chr4A 88.182 110 13 0 463 572 140710831 140710940 1.840000e-26 132.0
84 TraesCS2B01G527600 chr5D 100.000 29 0 0 3043 3071 42049814 42049842 4.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G527600 chr2B 722078788 722086925 8137 True 15029.00 15029 100.00000 1 8138 1 chr2B.!!$R3 8137
1 TraesCS2B01G527600 chr2D 594536771 594544758 7987 True 2200.40 6244 91.55420 9 7513 5 chr2D.!!$R5 7504
2 TraesCS2B01G527600 chr2D 441769070 441769638 568 True 403.00 527 91.30850 7538 8138 2 chr2D.!!$R4 600
3 TraesCS2B01G527600 chr2A 729158979 729167313 8334 True 1317.75 2213 92.13875 9 7513 8 chr2A.!!$R2 7504
4 TraesCS2B01G527600 chr1D 98828186 98831010 2824 False 408.75 538 91.81225 7541 8138 4 chr1D.!!$F4 597

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
735 757 0.249114 TGGGCCGCGTTTTCTTTTTC 60.249 50.000 4.92 0.00 0.00 2.29 F
1620 1935 1.126846 CGCGTGAAGCTAAAGTTGGAG 59.873 52.381 0.00 0.00 45.59 3.86 F
1770 2102 3.053917 GGAAAGTGGTAGGGGATTAGCAA 60.054 47.826 0.00 0.00 33.31 3.91 F
1986 2321 3.637998 GGCACCTAATGAAGCATCATG 57.362 47.619 4.99 0.00 45.60 3.07 F
2936 3293 0.380024 TTGTGAATGCGTGTGTGGTG 59.620 50.000 0.00 0.00 0.00 4.17 F
3508 4465 0.764890 TGTTACTGAGTTGGCAGCCT 59.235 50.000 14.15 0.00 39.51 4.58 F
3509 4466 1.142870 TGTTACTGAGTTGGCAGCCTT 59.857 47.619 14.15 0.00 39.51 4.35 F
4884 5963 2.628178 CCTATCCGGCTGATACAAGTGA 59.372 50.000 0.00 0.00 34.76 3.41 F
6786 7951 0.030369 GGCGACCGTGAGTATACTGG 59.970 60.000 10.90 8.15 0.00 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1895 2227 1.372499 GCAGTGGCAGCAACATGTG 60.372 57.895 1.78 0.0 40.72 3.21 R
2917 3274 0.380024 CACCACACACGCATTCACAA 59.620 50.000 0.00 0.0 0.00 3.33 R
2920 3277 1.153066 ACCACCACACACGCATTCA 60.153 52.632 0.00 0.0 0.00 2.57 R
3006 3363 1.215423 ACCTTGTTTGGAACTGAGGCT 59.785 47.619 11.22 0.0 38.29 4.58 R
4863 5942 2.628178 TCACTTGTATCAGCCGGATAGG 59.372 50.000 5.05 0.0 39.13 2.57 R
5444 6525 3.679389 AGATTCACTCATTTGCTCCGTT 58.321 40.909 0.00 0.0 0.00 4.44 R
5489 6571 7.509141 TTCCAATACGAACTACATACGGATA 57.491 36.000 0.00 0.0 30.15 2.59 R
6864 8029 1.010125 CCAACGGCGTGACACTTTG 60.010 57.895 15.70 5.9 0.00 2.77 R
7916 11363 0.035056 CCGTTGATCTTCCCAGCCTT 60.035 55.000 0.00 0.0 0.00 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
63 72 2.636403 ACACCCCTGTTAACTGGAGTAC 59.364 50.000 27.85 0.00 37.15 2.73
68 77 6.381994 CACCCCTGTTAACTGGAGTACTATTA 59.618 42.308 27.85 0.00 37.15 0.98
144 153 3.623906 TGAGATCAGCCTGGAAAAGAG 57.376 47.619 0.00 0.00 0.00 2.85
149 158 1.072331 TCAGCCTGGAAAAGAGGTCAC 59.928 52.381 0.00 0.00 32.60 3.67
159 168 2.100605 AAGAGGTCACAAGAATCCGC 57.899 50.000 0.00 0.00 0.00 5.54
169 178 4.690748 TCACAAGAATCCGCTAAGAACAAG 59.309 41.667 0.00 0.00 0.00 3.16
178 187 2.289565 GCTAAGAACAAGGAATCCCCG 58.710 52.381 0.00 0.00 40.87 5.73
181 190 4.444449 GCTAAGAACAAGGAATCCCCGTAT 60.444 45.833 0.00 0.00 40.87 3.06
211 220 3.957497 AGTAATGGACTGAGCTCCACTAG 59.043 47.826 12.15 4.08 43.38 2.57
258 267 2.580815 CCAGCGCTCATGAGGTCA 59.419 61.111 23.89 0.00 0.00 4.02
294 303 3.184683 GAGGCGACGCTGCTGAAG 61.185 66.667 20.77 0.00 34.52 3.02
583 605 1.655329 GGCGAGATGACCGGAGTAG 59.345 63.158 9.46 0.00 0.00 2.57
683 705 2.443016 CGACCAGGGGGAGAGAGG 60.443 72.222 0.00 0.00 38.05 3.69
684 706 2.041405 GACCAGGGGGAGAGAGGG 60.041 72.222 0.00 0.00 38.05 4.30
685 707 2.540910 ACCAGGGGGAGAGAGGGA 60.541 66.667 0.00 0.00 38.05 4.20
686 708 2.285180 CCAGGGGGAGAGAGGGAG 59.715 72.222 0.00 0.00 35.59 4.30
693 715 2.123033 GAGAGAGGGAGAGGGGGC 60.123 72.222 0.00 0.00 0.00 5.80
729 751 1.660264 CTTGTTGGGCCGCGTTTTC 60.660 57.895 4.92 0.00 0.00 2.29
735 757 0.249114 TGGGCCGCGTTTTCTTTTTC 60.249 50.000 4.92 0.00 0.00 2.29
738 760 1.535226 GGCCGCGTTTTCTTTTTCTGT 60.535 47.619 4.92 0.00 0.00 3.41
757 779 2.193536 GGACTTGTTGGGCTGCGTT 61.194 57.895 0.00 0.00 0.00 4.84
790 812 2.175184 CTTTGTCGGCCTTGCAGTCG 62.175 60.000 0.00 0.00 0.00 4.18
1020 1052 2.665185 AAGCTCGTCCACCGCAAC 60.665 61.111 0.00 0.00 36.19 4.17
1024 1056 3.220999 CTCGTCCACCGCAACCTCA 62.221 63.158 0.00 0.00 36.19 3.86
1067 1105 1.465189 AAGGTCCCCTCTCCCCTCTT 61.465 60.000 0.00 0.00 30.89 2.85
1070 1108 2.444895 CCCCTCTCCCCTCTTCCG 60.445 72.222 0.00 0.00 0.00 4.30
1096 1145 4.430423 CGGCGCGCTCTGTTTGAC 62.430 66.667 32.29 9.74 0.00 3.18
1097 1146 4.090057 GGCGCGCTCTGTTTGACC 62.090 66.667 32.29 5.91 0.00 4.02
1098 1147 4.430423 GCGCGCTCTGTTTGACCG 62.430 66.667 26.67 0.00 0.00 4.79
1204 1278 1.598676 GCGTACAATCTCATCGCCGTA 60.599 52.381 0.00 0.00 40.83 4.02
1281 1508 5.895889 GTGCTTGTTTTACTTTTTCATTGCG 59.104 36.000 0.00 0.00 0.00 4.85
1283 1510 6.311445 TGCTTGTTTTACTTTTTCATTGCGAA 59.689 30.769 0.00 0.00 0.00 4.70
1284 1511 6.623353 GCTTGTTTTACTTTTTCATTGCGAAC 59.377 34.615 0.00 0.00 31.73 3.95
1286 1513 5.230306 TGTTTTACTTTTTCATTGCGAACGG 59.770 36.000 0.00 0.00 31.73 4.44
1310 1537 3.271490 AGCAGAGTTAGGGTAGGTTCCTA 59.729 47.826 0.00 0.00 35.92 2.94
1319 1546 2.359994 GGGTAGGTTCCTACATGGGAGA 60.360 54.545 24.53 0.00 40.29 3.71
1343 1572 2.430332 TGGTTTGCCAGGTGAAGAAAAG 59.570 45.455 0.00 0.00 40.46 2.27
1443 1758 7.223584 TGTGATAACTTGTTTCTCCTTCATGA 58.776 34.615 0.00 0.00 0.00 3.07
1450 1765 8.954950 ACTTGTTTCTCCTTCATGATAGTATG 57.045 34.615 0.00 0.00 0.00 2.39
1474 1789 1.265365 GTGACAAGTTCAAGCCTCTGC 59.735 52.381 0.00 0.00 35.39 4.26
1548 1863 8.327941 TCGAAATTGATCATCTTCTTCTGTTT 57.672 30.769 12.82 0.00 0.00 2.83
1581 1896 4.108699 AGTTCTGAGAGATTCTGCTTCG 57.891 45.455 0.00 0.00 0.00 3.79
1620 1935 1.126846 CGCGTGAAGCTAAAGTTGGAG 59.873 52.381 0.00 0.00 45.59 3.86
1676 1998 4.153475 GCATCGAGTGGCTTTGTTTAGTTA 59.847 41.667 0.00 0.00 0.00 2.24
1770 2102 3.053917 GGAAAGTGGTAGGGGATTAGCAA 60.054 47.826 0.00 0.00 33.31 3.91
1880 2212 7.104043 TGAAAATTAGAGAAGGGATGCAATG 57.896 36.000 0.00 0.00 0.00 2.82
1895 2227 5.701290 GGATGCAATGGTGTAGGTCTTATAC 59.299 44.000 0.00 0.00 0.00 1.47
1896 2228 5.685520 TGCAATGGTGTAGGTCTTATACA 57.314 39.130 0.00 0.00 0.00 2.29
1986 2321 3.637998 GGCACCTAATGAAGCATCATG 57.362 47.619 4.99 0.00 45.60 3.07
1992 2327 5.356190 CACCTAATGAAGCATCATGACTTGT 59.644 40.000 4.99 0.00 45.60 3.16
2026 2361 9.686683 AAAATACATTGAGCAGAGGTAATAAGT 57.313 29.630 0.00 0.00 0.00 2.24
2045 2380 4.423625 AGTCACCATGCCTAGGAATTAC 57.576 45.455 14.75 3.11 0.00 1.89
2180 2515 8.144478 GCATAGTCTGTAGATTATGACAAGGAA 58.856 37.037 21.48 0.00 43.31 3.36
2428 2771 6.319658 GGACATGGCTCTGAAAATCTAAATGA 59.680 38.462 0.00 0.00 0.00 2.57
2511 2854 7.886629 AGCATGTGGTATGTGATTTATCTTT 57.113 32.000 0.00 0.00 0.00 2.52
2548 2891 5.468072 AGCCTTTATCATTATCTGCTTCACG 59.532 40.000 0.00 0.00 0.00 4.35
2762 3119 9.866655 TTAAATAATTAGATCCCATGCAAGTCT 57.133 29.630 0.00 0.00 0.00 3.24
2886 3243 9.401058 CTTTTGATGAGGTTCTATTATCCAAGT 57.599 33.333 0.00 0.00 0.00 3.16
2924 3281 7.883229 AAAGTTGACTTTTCGTTTTGTGAAT 57.117 28.000 3.37 0.00 43.07 2.57
2925 3282 6.869421 AGTTGACTTTTCGTTTTGTGAATG 57.131 33.333 0.00 0.00 0.00 2.67
2926 3283 5.288472 AGTTGACTTTTCGTTTTGTGAATGC 59.712 36.000 0.00 0.00 0.00 3.56
2927 3284 3.788694 TGACTTTTCGTTTTGTGAATGCG 59.211 39.130 0.00 0.00 0.00 4.73
2928 3285 3.765026 ACTTTTCGTTTTGTGAATGCGT 58.235 36.364 0.00 0.00 0.00 5.24
2929 3286 3.545873 ACTTTTCGTTTTGTGAATGCGTG 59.454 39.130 0.00 0.00 0.00 5.34
2930 3287 2.834574 TTCGTTTTGTGAATGCGTGT 57.165 40.000 0.00 0.00 0.00 4.49
2931 3288 2.098215 TCGTTTTGTGAATGCGTGTG 57.902 45.000 0.00 0.00 0.00 3.82
2932 3289 1.398739 TCGTTTTGTGAATGCGTGTGT 59.601 42.857 0.00 0.00 0.00 3.72
2933 3290 1.512364 CGTTTTGTGAATGCGTGTGTG 59.488 47.619 0.00 0.00 0.00 3.82
2934 3291 1.851666 GTTTTGTGAATGCGTGTGTGG 59.148 47.619 0.00 0.00 0.00 4.17
2935 3292 1.098869 TTTGTGAATGCGTGTGTGGT 58.901 45.000 0.00 0.00 0.00 4.16
2936 3293 0.380024 TTGTGAATGCGTGTGTGGTG 59.620 50.000 0.00 0.00 0.00 4.17
2937 3294 1.282570 GTGAATGCGTGTGTGGTGG 59.717 57.895 0.00 0.00 0.00 4.61
2938 3295 1.153066 TGAATGCGTGTGTGGTGGT 60.153 52.632 0.00 0.00 0.00 4.16
2939 3296 1.282570 GAATGCGTGTGTGGTGGTG 59.717 57.895 0.00 0.00 0.00 4.17
2940 3297 2.128853 GAATGCGTGTGTGGTGGTGG 62.129 60.000 0.00 0.00 0.00 4.61
2941 3298 2.902423 AATGCGTGTGTGGTGGTGGT 62.902 55.000 0.00 0.00 0.00 4.16
2942 3299 3.582120 GCGTGTGTGGTGGTGGTG 61.582 66.667 0.00 0.00 0.00 4.17
2943 3300 2.899838 CGTGTGTGGTGGTGGTGG 60.900 66.667 0.00 0.00 0.00 4.61
2944 3301 2.274104 GTGTGTGGTGGTGGTGGT 59.726 61.111 0.00 0.00 0.00 4.16
2945 3302 2.118404 GTGTGTGGTGGTGGTGGTG 61.118 63.158 0.00 0.00 0.00 4.17
2946 3303 2.518349 GTGTGGTGGTGGTGGTGG 60.518 66.667 0.00 0.00 0.00 4.61
2947 3304 3.018193 TGTGGTGGTGGTGGTGGT 61.018 61.111 0.00 0.00 0.00 4.16
2948 3305 2.518349 GTGGTGGTGGTGGTGGTG 60.518 66.667 0.00 0.00 0.00 4.17
2949 3306 3.814906 TGGTGGTGGTGGTGGTGG 61.815 66.667 0.00 0.00 0.00 4.61
2950 3307 3.816090 GGTGGTGGTGGTGGTGGT 61.816 66.667 0.00 0.00 0.00 4.16
2951 3308 2.518349 GTGGTGGTGGTGGTGGTG 60.518 66.667 0.00 0.00 0.00 4.17
2952 3309 3.814906 TGGTGGTGGTGGTGGTGG 61.815 66.667 0.00 0.00 0.00 4.61
2953 3310 3.816090 GGTGGTGGTGGTGGTGGT 61.816 66.667 0.00 0.00 0.00 4.16
2954 3311 2.518349 GTGGTGGTGGTGGTGGTG 60.518 66.667 0.00 0.00 0.00 4.17
2955 3312 3.814906 TGGTGGTGGTGGTGGTGG 61.815 66.667 0.00 0.00 0.00 4.61
2956 3313 3.816090 GGTGGTGGTGGTGGTGGT 61.816 66.667 0.00 0.00 0.00 4.16
2957 3314 2.518349 GTGGTGGTGGTGGTGGTG 60.518 66.667 0.00 0.00 0.00 4.17
2958 3315 3.814906 TGGTGGTGGTGGTGGTGG 61.815 66.667 0.00 0.00 0.00 4.61
2959 3316 3.816090 GGTGGTGGTGGTGGTGGT 61.816 66.667 0.00 0.00 0.00 4.16
2960 3317 2.518349 GTGGTGGTGGTGGTGGTG 60.518 66.667 0.00 0.00 0.00 4.17
2961 3318 3.814906 TGGTGGTGGTGGTGGTGG 61.815 66.667 0.00 0.00 0.00 4.61
2962 3319 4.596585 GGTGGTGGTGGTGGTGGG 62.597 72.222 0.00 0.00 0.00 4.61
2963 3320 4.596585 GTGGTGGTGGTGGTGGGG 62.597 72.222 0.00 0.00 0.00 4.96
2984 3341 2.201523 GGGGGTAGTATTTCCAGGGA 57.798 55.000 0.00 0.00 0.00 4.20
2985 3342 1.773052 GGGGGTAGTATTTCCAGGGAC 59.227 57.143 0.00 0.00 0.00 4.46
2986 3343 2.484602 GGGGTAGTATTTCCAGGGACA 58.515 52.381 0.00 0.00 0.00 4.02
2987 3344 2.848071 GGGGTAGTATTTCCAGGGACAA 59.152 50.000 0.00 0.00 0.00 3.18
2988 3345 3.267551 GGGGTAGTATTTCCAGGGACAAA 59.732 47.826 0.00 0.00 0.00 2.83
2989 3346 4.079385 GGGGTAGTATTTCCAGGGACAAAT 60.079 45.833 0.00 0.00 0.00 2.32
2990 3347 5.131067 GGGTAGTATTTCCAGGGACAAATC 58.869 45.833 0.00 0.00 0.00 2.17
2991 3348 5.131067 GGTAGTATTTCCAGGGACAAATCC 58.869 45.833 0.00 0.00 45.42 3.01
3004 3361 4.499183 GGACAAATCCAACAACAACAACA 58.501 39.130 0.00 0.00 45.47 3.33
3005 3362 4.932200 GGACAAATCCAACAACAACAACAA 59.068 37.500 0.00 0.00 45.47 2.83
3006 3363 5.409826 GGACAAATCCAACAACAACAACAAA 59.590 36.000 0.00 0.00 45.47 2.83
3007 3364 6.402011 GGACAAATCCAACAACAACAACAAAG 60.402 38.462 0.00 0.00 45.47 2.77
3008 3365 5.106752 ACAAATCCAACAACAACAACAAAGC 60.107 36.000 0.00 0.00 0.00 3.51
3009 3366 2.966050 TCCAACAACAACAACAAAGCC 58.034 42.857 0.00 0.00 0.00 4.35
3015 3678 3.258123 ACAACAACAACAAAGCCTCAGTT 59.742 39.130 0.00 0.00 0.00 3.16
3035 3698 2.136863 TCCAAACAAGGTTGGGGTAGA 58.863 47.619 16.35 0.00 46.89 2.59
3322 4279 6.461509 CCTTGATTGGCTTTAGTTGTTTCTGT 60.462 38.462 0.00 0.00 0.00 3.41
3508 4465 0.764890 TGTTACTGAGTTGGCAGCCT 59.235 50.000 14.15 0.00 39.51 4.58
3509 4466 1.142870 TGTTACTGAGTTGGCAGCCTT 59.857 47.619 14.15 0.00 39.51 4.35
3875 4833 5.521906 TTTCTGAGTCGATCTTGATAGGG 57.478 43.478 0.00 0.00 0.00 3.53
3889 4847 9.579932 GATCTTGATAGGGAAAATAGAAACCAT 57.420 33.333 0.00 0.00 0.00 3.55
4152 5110 6.435428 GGGACGCCTTATAAACAATATGTTG 58.565 40.000 0.00 0.00 40.14 3.33
4218 5176 8.435982 TGATGTTTCCATTCCCTAATTTTGTTT 58.564 29.630 0.00 0.00 0.00 2.83
4230 5188 7.125053 TCCCTAATTTTGTTTCCAACTTGAGTT 59.875 33.333 0.00 0.00 39.12 3.01
4382 5456 3.825143 ATTATCATGGTTTTGGCTGCC 57.175 42.857 12.87 12.87 0.00 4.85
4524 5598 9.799106 ATAAGTTAAACCCTCCATATCTTCATG 57.201 33.333 0.00 0.00 0.00 3.07
4526 5600 7.872138 AGTTAAACCCTCCATATCTTCATGAA 58.128 34.615 8.12 8.12 0.00 2.57
4527 5601 8.336235 AGTTAAACCCTCCATATCTTCATGAAA 58.664 33.333 9.88 1.39 0.00 2.69
4529 5603 9.713684 TTAAACCCTCCATATCTTCATGAAAAT 57.286 29.630 9.88 4.38 0.00 1.82
4697 5776 7.981789 TCAGGCTACAAGTGAGTTCTATATTTG 59.018 37.037 0.00 0.00 0.00 2.32
4834 5913 7.962964 TCTGAATAATCTGTTCGAAACTTGT 57.037 32.000 0.00 0.00 0.00 3.16
4841 5920 9.825972 ATAATCTGTTCGAAACTTGTTTATGTG 57.174 29.630 0.00 0.00 0.00 3.21
4843 5922 5.587043 TCTGTTCGAAACTTGTTTATGTGGT 59.413 36.000 0.00 0.00 0.00 4.16
4844 5923 6.762187 TCTGTTCGAAACTTGTTTATGTGGTA 59.238 34.615 0.00 0.00 0.00 3.25
4845 5924 6.717413 TGTTCGAAACTTGTTTATGTGGTAC 58.283 36.000 0.00 0.00 0.00 3.34
4846 5925 6.539464 TGTTCGAAACTTGTTTATGTGGTACT 59.461 34.615 0.00 0.00 0.00 2.73
4847 5926 7.710044 TGTTCGAAACTTGTTTATGTGGTACTA 59.290 33.333 0.00 0.00 0.00 1.82
4848 5927 7.642071 TCGAAACTTGTTTATGTGGTACTAC 57.358 36.000 1.77 1.77 0.00 2.73
4849 5928 7.436118 TCGAAACTTGTTTATGTGGTACTACT 58.564 34.615 10.95 0.00 0.00 2.57
4850 5929 8.575589 TCGAAACTTGTTTATGTGGTACTACTA 58.424 33.333 10.95 0.00 0.00 1.82
4851 5930 9.195411 CGAAACTTGTTTATGTGGTACTACTAA 57.805 33.333 10.95 4.44 0.00 2.24
4884 5963 2.628178 CCTATCCGGCTGATACAAGTGA 59.372 50.000 0.00 0.00 34.76 3.41
5146 6226 5.665459 CACAGGAGGTAAGTCTGATTTAGG 58.335 45.833 0.00 0.00 33.19 2.69
5444 6525 3.197766 AGAGATTCCAATGCGGACTACAA 59.802 43.478 0.00 0.00 46.36 2.41
5518 6600 7.361127 CGTATGTAGTTCGTATTGGAATCTCT 58.639 38.462 0.00 0.00 0.00 3.10
5665 6754 9.204570 ACAGTTACAGTACTGATTTTATGTGTC 57.795 33.333 29.30 3.45 46.72 3.67
5677 6766 8.334263 TGATTTTATGTGTCTATGACTTGCAA 57.666 30.769 0.00 0.00 33.15 4.08
5718 6807 8.885494 AGTTCAAGCATATCTGATTAGACTTC 57.115 34.615 0.00 0.00 35.34 3.01
5929 7020 6.001460 TGGTTTGGTATTAGAACAAGTGGAG 58.999 40.000 0.00 0.00 0.00 3.86
5973 7064 4.883585 TGACAAAGAAGTCTCAATGCAACT 59.116 37.500 0.00 0.00 39.27 3.16
6029 7120 1.973281 GCTTGCTTGCCTACCTGCA 60.973 57.895 0.00 0.00 40.07 4.41
6089 7180 7.759433 AGATTAATGAAATACTTGGGTTTTGCG 59.241 33.333 0.00 0.00 0.00 4.85
6096 7187 3.643159 ACTTGGGTTTTGCGAATTCTC 57.357 42.857 3.52 0.00 0.00 2.87
6300 7396 4.286910 TGCTTTGTTCAGTTGAAATACGC 58.713 39.130 0.00 0.00 35.58 4.42
6304 7400 5.493133 TTGTTCAGTTGAAATACGCTTGT 57.507 34.783 0.00 0.00 35.58 3.16
6409 7506 6.633856 AGGAATGGAATCGAAAATTTTCTGG 58.366 36.000 24.53 12.89 35.07 3.86
6500 7665 3.343617 TGTTAGTCTGGGCATTAGCAAC 58.656 45.455 0.00 0.00 44.61 4.17
6507 7672 1.095807 GGGCATTAGCAACGGAGGTC 61.096 60.000 0.00 0.00 44.61 3.85
6508 7673 1.095807 GGCATTAGCAACGGAGGTCC 61.096 60.000 0.00 0.00 44.61 4.46
6549 7714 4.153117 GCTTCAAGCCGAATATCTGTATGG 59.847 45.833 0.00 0.00 34.48 2.74
6586 7751 9.288576 CCTATGCATCTAATATGACCTGAAAAA 57.711 33.333 0.19 0.00 0.00 1.94
6608 7773 8.862550 AAAATTGAAACAGAAGTTCATGAGTC 57.137 30.769 5.50 0.00 36.84 3.36
6657 7822 8.281212 TGTTTATTTATTCTCCTTCTGCTTCC 57.719 34.615 0.00 0.00 0.00 3.46
6786 7951 0.030369 GGCGACCGTGAGTATACTGG 59.970 60.000 10.90 8.15 0.00 4.00
6795 7960 4.982916 CCGTGAGTATACTGGCACTATTTC 59.017 45.833 10.90 0.00 0.00 2.17
6801 7966 6.875076 AGTATACTGGCACTATTTCGAACTT 58.125 36.000 4.10 0.00 0.00 2.66
6844 8009 8.969121 TTGCTTATTTCACACTACAATCAATG 57.031 30.769 0.00 0.00 0.00 2.82
6883 8048 1.450669 AAAGTGTCACGCCGTTGGT 60.451 52.632 0.00 0.00 0.00 3.67
6903 8068 7.042791 CGTTGGTAATGTTGCAAAGAGAATTTT 60.043 33.333 0.00 0.00 0.00 1.82
6928 8093 3.727419 GCGCATGGCAAAGAGAATT 57.273 47.368 0.30 0.00 42.87 2.17
6929 8094 2.849880 GCGCATGGCAAAGAGAATTA 57.150 45.000 0.30 0.00 42.87 1.40
6930 8095 3.149436 GCGCATGGCAAAGAGAATTAA 57.851 42.857 0.30 0.00 42.87 1.40
6931 8096 2.854185 GCGCATGGCAAAGAGAATTAAC 59.146 45.455 0.30 0.00 42.87 2.01
6935 8100 5.005012 CGCATGGCAAAGAGAATTAACAATG 59.995 40.000 0.00 0.00 0.00 2.82
6938 8103 7.279313 GCATGGCAAAGAGAATTAACAATGAAT 59.721 33.333 0.00 0.00 0.00 2.57
7013 8178 8.739972 AGAAGGAATTTCTTTATTACGTTGCAT 58.260 29.630 0.00 0.00 43.68 3.96
7014 8179 8.911247 AAGGAATTTCTTTATTACGTTGCATC 57.089 30.769 0.00 0.00 0.00 3.91
7071 8246 4.341806 TGATGTGTTTGAACAGAATTGGCT 59.658 37.500 0.00 0.00 40.05 4.75
7092 8267 2.302733 TCAGTTGACAGGAATAGCAGCA 59.697 45.455 0.00 0.00 0.00 4.41
7107 8282 1.132453 GCAGCAATACTTCGTTTCCCC 59.868 52.381 0.00 0.00 0.00 4.81
7147 8322 5.444663 CATCGAGATGTGATTAGTCCAGA 57.555 43.478 4.99 0.00 34.23 3.86
7152 8329 3.964031 AGATGTGATTAGTCCAGACCTCC 59.036 47.826 0.00 0.00 0.00 4.30
7154 8331 1.409427 GTGATTAGTCCAGACCTCCGG 59.591 57.143 0.00 0.00 0.00 5.14
7169 8346 0.618458 TCCGGAGCTGCCTAACATTT 59.382 50.000 0.00 0.00 0.00 2.32
7170 8347 0.734889 CCGGAGCTGCCTAACATTTG 59.265 55.000 0.00 0.00 0.00 2.32
7180 8357 5.189659 TGCCTAACATTTGTTGTACCAAC 57.810 39.130 6.21 0.22 37.68 3.77
7189 8366 5.579564 TTTGTTGTACCAACCTGTTAACC 57.420 39.130 2.48 0.00 0.00 2.85
7346 8527 5.857845 ACTTAATAATAAGGGCCCTCTCCAT 59.142 40.000 28.84 12.24 42.39 3.41
7449 8630 2.548493 GCTGTGTAACCACCCTCGTTAA 60.548 50.000 0.00 0.00 41.09 2.01
7464 8645 5.120208 CCCTCGTTAAATGTGTGTTCTGTAG 59.880 44.000 0.00 0.00 0.00 2.74
7507 8688 3.002348 GGTCGTTCTCTGGAAAACTTGTG 59.998 47.826 0.00 0.00 32.81 3.33
7513 8694 1.454847 TGGAAAACTTGTGGCCGCT 60.455 52.632 18.96 0.00 0.00 5.52
7514 8695 1.040339 TGGAAAACTTGTGGCCGCTT 61.040 50.000 18.96 2.12 0.00 4.68
7515 8696 0.104120 GGAAAACTTGTGGCCGCTTT 59.896 50.000 18.96 9.47 0.00 3.51
7516 8697 1.487482 GAAAACTTGTGGCCGCTTTC 58.513 50.000 18.96 14.65 0.00 2.62
7517 8698 1.067060 GAAAACTTGTGGCCGCTTTCT 59.933 47.619 18.96 1.52 0.00 2.52
7518 8699 0.385390 AAACTTGTGGCCGCTTTCTG 59.615 50.000 18.96 5.53 0.00 3.02
7519 8700 1.455383 AACTTGTGGCCGCTTTCTGG 61.455 55.000 18.96 3.80 0.00 3.86
7520 8701 1.600636 CTTGTGGCCGCTTTCTGGA 60.601 57.895 18.96 0.00 0.00 3.86
7521 8702 1.152860 TTGTGGCCGCTTTCTGGAA 60.153 52.632 18.96 0.00 0.00 3.53
7522 8703 0.753479 TTGTGGCCGCTTTCTGGAAA 60.753 50.000 18.96 0.00 0.00 3.13
7523 8704 0.753479 TGTGGCCGCTTTCTGGAAAA 60.753 50.000 18.96 0.00 0.00 2.29
7524 8705 0.318699 GTGGCCGCTTTCTGGAAAAC 60.319 55.000 9.68 0.00 0.00 2.43
7525 8706 0.467290 TGGCCGCTTTCTGGAAAACT 60.467 50.000 0.00 0.00 0.00 2.66
7526 8707 0.673985 GGCCGCTTTCTGGAAAACTT 59.326 50.000 0.00 0.00 0.00 2.66
7527 8708 1.335964 GGCCGCTTTCTGGAAAACTTC 60.336 52.381 0.00 0.00 0.00 3.01
7528 8709 1.663161 GCCGCTTTCTGGAAAACTTCG 60.663 52.381 0.00 0.42 0.00 3.79
7529 8710 1.663161 CCGCTTTCTGGAAAACTTCGC 60.663 52.381 0.00 0.00 0.00 4.70
7530 8711 1.663161 CGCTTTCTGGAAAACTTCGCC 60.663 52.381 0.00 0.00 0.00 5.54
7531 8712 1.663161 GCTTTCTGGAAAACTTCGCCG 60.663 52.381 0.00 0.00 0.00 6.46
7532 8713 0.309612 TTTCTGGAAAACTTCGCCGC 59.690 50.000 0.00 0.00 0.00 6.53
7533 8714 1.512156 TTCTGGAAAACTTCGCCGCC 61.512 55.000 0.00 0.00 0.00 6.13
7534 8715 1.966451 CTGGAAAACTTCGCCGCCT 60.966 57.895 0.00 0.00 0.00 5.52
7535 8716 1.912371 CTGGAAAACTTCGCCGCCTC 61.912 60.000 0.00 0.00 0.00 4.70
7536 8717 1.671379 GGAAAACTTCGCCGCCTCT 60.671 57.895 0.00 0.00 0.00 3.69
7537 8718 0.390735 GGAAAACTTCGCCGCCTCTA 60.391 55.000 0.00 0.00 0.00 2.43
7538 8719 0.720027 GAAAACTTCGCCGCCTCTAC 59.280 55.000 0.00 0.00 0.00 2.59
7539 8720 0.672711 AAAACTTCGCCGCCTCTACC 60.673 55.000 0.00 0.00 0.00 3.18
7540 8721 1.542187 AAACTTCGCCGCCTCTACCT 61.542 55.000 0.00 0.00 0.00 3.08
7541 8722 2.105128 CTTCGCCGCCTCTACCTG 59.895 66.667 0.00 0.00 0.00 4.00
7542 8723 3.432051 CTTCGCCGCCTCTACCTGG 62.432 68.421 0.00 0.00 0.00 4.45
7543 8724 4.753662 TCGCCGCCTCTACCTGGT 62.754 66.667 4.05 4.05 0.00 4.00
7544 8725 2.831742 CGCCGCCTCTACCTGGTA 60.832 66.667 6.36 6.36 0.00 3.25
7545 8726 2.846652 CGCCGCCTCTACCTGGTAG 61.847 68.421 24.87 24.87 37.47 3.18
7546 8727 2.499827 GCCGCCTCTACCTGGTAGG 61.500 68.421 28.71 20.16 42.49 3.18
7583 8764 1.022982 GGCGTGGCCTTAGGTTGTAC 61.023 60.000 3.32 0.00 46.69 2.90
7608 8789 0.902531 GAAGGAGGGATGACGTGGAA 59.097 55.000 0.00 0.00 0.00 3.53
7614 8795 0.613777 GGGATGACGTGGAAGAAGGT 59.386 55.000 0.00 0.00 0.00 3.50
7672 8856 0.810031 GCGAGAGAGAGAGAGAGCGT 60.810 60.000 0.00 0.00 0.00 5.07
7705 10811 2.987985 GGGTTAGGTCTCCCGACTT 58.012 57.895 0.00 0.00 40.10 3.01
7835 11281 4.706842 ACGATAAGATAAACTGGGCCAT 57.293 40.909 6.72 0.00 0.00 4.40
7854 11301 5.283457 CCATAACTAACTGGCTAAGCTCT 57.717 43.478 0.00 0.00 0.00 4.09
7897 11344 2.906897 CCCGCCTGCACAAACAGT 60.907 61.111 0.00 0.00 35.83 3.55
7908 11355 1.521423 CACAAACAGTTCGTCCTCGAC 59.479 52.381 0.00 0.00 46.03 4.20
7918 11365 3.022981 GTCCTCGACGAGCTGAAAG 57.977 57.895 19.55 4.83 0.00 2.62
7919 11366 0.456995 GTCCTCGACGAGCTGAAAGG 60.457 60.000 19.55 5.02 0.00 3.11
7920 11367 1.807573 CCTCGACGAGCTGAAAGGC 60.808 63.158 19.55 0.00 0.00 4.35
7921 11368 1.214062 CTCGACGAGCTGAAAGGCT 59.786 57.895 12.67 0.00 46.11 4.58
7922 11369 1.075425 CTCGACGAGCTGAAAGGCTG 61.075 60.000 12.67 0.00 43.20 4.85
7923 11370 2.097038 CGACGAGCTGAAAGGCTGG 61.097 63.158 0.00 0.00 43.20 4.85
7924 11371 1.743252 GACGAGCTGAAAGGCTGGG 60.743 63.158 0.00 0.00 43.20 4.45
7925 11372 2.172483 GACGAGCTGAAAGGCTGGGA 62.172 60.000 0.00 0.00 43.20 4.37
7926 11373 1.003355 CGAGCTGAAAGGCTGGGAA 60.003 57.895 0.00 0.00 43.20 3.97
7927 11374 1.023513 CGAGCTGAAAGGCTGGGAAG 61.024 60.000 0.00 0.00 43.20 3.46
7928 11375 0.326264 GAGCTGAAAGGCTGGGAAGA 59.674 55.000 0.00 0.00 43.20 2.87
7929 11376 0.998145 AGCTGAAAGGCTGGGAAGAT 59.002 50.000 0.00 0.00 41.43 2.40
7930 11377 1.064832 AGCTGAAAGGCTGGGAAGATC 60.065 52.381 0.00 0.00 41.43 2.75
7931 11378 1.340405 GCTGAAAGGCTGGGAAGATCA 60.340 52.381 0.00 0.00 0.00 2.92
7932 11379 2.881403 GCTGAAAGGCTGGGAAGATCAA 60.881 50.000 0.00 0.00 0.00 2.57
7933 11380 2.751806 CTGAAAGGCTGGGAAGATCAAC 59.248 50.000 0.00 0.00 0.00 3.18
7934 11381 1.740025 GAAAGGCTGGGAAGATCAACG 59.260 52.381 0.00 0.00 0.00 4.10
7935 11382 0.035056 AAGGCTGGGAAGATCAACGG 60.035 55.000 0.00 0.00 0.00 4.44
7936 11383 1.201429 AGGCTGGGAAGATCAACGGT 61.201 55.000 0.00 0.00 0.00 4.83
7937 11384 1.026718 GGCTGGGAAGATCAACGGTG 61.027 60.000 0.00 0.00 0.00 4.94
7938 11385 0.036388 GCTGGGAAGATCAACGGTGA 60.036 55.000 5.17 5.17 38.41 4.02
7939 11386 1.726853 CTGGGAAGATCAACGGTGAC 58.273 55.000 4.62 0.00 36.31 3.67
7952 11399 2.659610 GTGACGAGCTGGAAGGCT 59.340 61.111 1.44 0.00 46.11 4.58
7955 11402 2.925170 ACGAGCTGGAAGGCTGGT 60.925 61.111 1.44 0.00 44.21 4.00
8033 11481 2.928396 CGGTGGTGGGTCCTCCTT 60.928 66.667 9.22 0.00 45.01 3.36
8042 11490 3.522343 GGTGGGTCCTCCTTAATGTAGTT 59.478 47.826 1.13 0.00 36.20 2.24
8045 11493 4.600111 TGGGTCCTCCTTAATGTAGTTTGT 59.400 41.667 0.00 0.00 36.20 2.83
8101 11549 0.795085 CTATACGTAGGGCTCGTCGG 59.205 60.000 0.08 0.00 41.72 4.79
8128 11576 2.034879 CACAACTCTTGGCGGCGAT 61.035 57.895 12.98 0.00 34.12 4.58
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
63 72 2.028385 GCCGGTGGGACAGGTATAATAG 60.028 54.545 1.90 0.00 41.80 1.73
68 77 3.087906 GGCCGGTGGGACAGGTAT 61.088 66.667 1.90 0.00 42.95 2.73
144 153 3.247006 TCTTAGCGGATTCTTGTGACC 57.753 47.619 0.00 0.00 0.00 4.02
149 158 4.253685 TCCTTGTTCTTAGCGGATTCTTG 58.746 43.478 0.00 0.00 0.00 3.02
159 168 3.629142 ACGGGGATTCCTTGTTCTTAG 57.371 47.619 2.01 0.00 0.00 2.18
178 187 8.298140 AGCTCAGTCCATTACTTCGTAATATAC 58.702 37.037 0.00 2.17 36.70 1.47
181 190 6.238953 GGAGCTCAGTCCATTACTTCGTAATA 60.239 42.308 17.19 0.00 36.70 0.98
187 196 3.895232 TGGAGCTCAGTCCATTACTTC 57.105 47.619 17.19 0.00 41.99 3.01
211 220 1.406205 GCTCTGGAAGGACAGGTTAGC 60.406 57.143 0.00 0.00 38.98 3.09
213 222 1.203313 AGGCTCTGGAAGGACAGGTTA 60.203 52.381 0.00 0.00 38.98 2.85
240 249 2.894387 GACCTCATGAGCGCTGGC 60.894 66.667 18.48 0.38 40.37 4.85
258 267 1.749063 TCCAGCTACGACGTCATGAAT 59.251 47.619 17.16 0.00 0.00 2.57
383 392 3.827898 CCTCGTCGCCACCTCTCC 61.828 72.222 0.00 0.00 0.00 3.71
534 545 1.817099 GAAGGACATGGCTCTGCGG 60.817 63.158 0.00 0.00 0.00 5.69
547 558 3.075005 CCGCCGAGGAAGGAAGGA 61.075 66.667 0.00 0.00 45.00 3.36
684 706 4.106925 CAGCACAGGCCCCCTCTC 62.107 72.222 0.00 0.00 42.56 3.20
685 707 4.990910 ACAGCACAGGCCCCCTCT 62.991 66.667 0.00 0.00 42.56 3.69
686 708 3.927481 GAACAGCACAGGCCCCCTC 62.927 68.421 0.00 0.00 42.56 4.30
693 715 1.739562 GCCGAGAGAACAGCACAGG 60.740 63.158 0.00 0.00 0.00 4.00
729 751 3.737972 GCCCAACAAGTCCACAGAAAAAG 60.738 47.826 0.00 0.00 0.00 2.27
735 757 1.799258 GCAGCCCAACAAGTCCACAG 61.799 60.000 0.00 0.00 0.00 3.66
738 760 2.594303 CGCAGCCCAACAAGTCCA 60.594 61.111 0.00 0.00 0.00 4.02
1096 1145 4.722700 CAACAGAGCCCCACCCGG 62.723 72.222 0.00 0.00 0.00 5.73
1097 1146 4.722700 CCAACAGAGCCCCACCCG 62.723 72.222 0.00 0.00 0.00 5.28
1106 1174 3.730761 GCAGCCACGCCAACAGAG 61.731 66.667 0.00 0.00 0.00 3.35
1112 1180 3.300934 CTAGTCAGCAGCCACGCCA 62.301 63.158 0.00 0.00 0.00 5.69
1281 1508 1.275573 ACCCTAACTCTGCTTCCGTTC 59.724 52.381 0.00 0.00 0.00 3.95
1283 1510 2.100989 CTACCCTAACTCTGCTTCCGT 58.899 52.381 0.00 0.00 0.00 4.69
1284 1511 1.409427 CCTACCCTAACTCTGCTTCCG 59.591 57.143 0.00 0.00 0.00 4.30
1286 1513 3.118702 GGAACCTACCCTAACTCTGCTTC 60.119 52.174 0.00 0.00 0.00 3.86
1353 1583 2.101640 TACCCATCATAGCCAGCTCA 57.898 50.000 0.00 0.00 0.00 4.26
1403 1633 3.914426 ATCACAGGGATGGTCTACAAC 57.086 47.619 0.00 0.00 34.06 3.32
1415 1645 4.911390 AGGAGAAACAAGTTATCACAGGG 58.089 43.478 0.00 0.00 0.00 4.45
1417 1647 7.388776 TCATGAAGGAGAAACAAGTTATCACAG 59.611 37.037 0.00 0.00 0.00 3.66
1443 1758 6.149474 GCTTGAACTTGTCACAACCATACTAT 59.851 38.462 0.00 0.00 35.39 2.12
1450 1765 2.024414 AGGCTTGAACTTGTCACAACC 58.976 47.619 0.00 0.00 35.39 3.77
1474 1789 3.049344 AGATAACTAGAAGGCCCTTGGG 58.951 50.000 0.00 0.32 0.00 4.12
1548 1863 5.989477 TCTCTCAGAACTTTCCTGAAAACA 58.011 37.500 0.00 0.00 39.83 2.83
1581 1896 3.432051 CTCCGCATCACGTCCTCCC 62.432 68.421 0.00 0.00 41.42 4.30
1620 1935 7.336931 ACAAATGGTATCACCTCAACTACAATC 59.663 37.037 0.00 0.00 39.58 2.67
1827 2159 4.330074 CGTATTACTTGAGCCTTTCCAGTG 59.670 45.833 0.00 0.00 34.02 3.66
1880 2212 5.293569 GCAACATGTGTATAAGACCTACACC 59.706 44.000 0.00 0.00 45.37 4.16
1895 2227 1.372499 GCAGTGGCAGCAACATGTG 60.372 57.895 1.78 0.00 40.72 3.21
1896 2228 2.911484 CGCAGTGGCAGCAACATGT 61.911 57.895 1.78 0.00 41.24 3.21
1954 2289 5.060506 TCATTAGGTGCCCATTATACAACG 58.939 41.667 0.00 0.00 0.00 4.10
1966 2301 3.004106 GTCATGATGCTTCATTAGGTGCC 59.996 47.826 12.15 0.00 40.70 5.01
1986 2321 7.572759 TCAATGTATTTTCGAGTTCACAAGTC 58.427 34.615 0.00 0.00 0.00 3.01
1992 2327 5.931724 TCTGCTCAATGTATTTTCGAGTTCA 59.068 36.000 0.00 0.00 0.00 3.18
2026 2361 3.118038 GTGGTAATTCCTAGGCATGGTGA 60.118 47.826 2.96 0.00 37.07 4.02
2045 2380 6.128007 ACAAAGAAAAGCGATGTATAAGGTGG 60.128 38.462 0.00 0.00 0.00 4.61
2180 2515 2.888998 GACGCGCAAAACGTTCCCT 61.889 57.895 5.73 0.00 45.24 4.20
2358 2696 8.097791 AGTTTAAGCCAAGGGTACTTATCATA 57.902 34.615 0.00 0.00 34.49 2.15
2785 3142 8.946085 TCAGACAAGCTTATTGTAAGGTTATTG 58.054 33.333 12.22 10.93 36.35 1.90
2886 3243 8.528044 AAAGTCAACTTTTAAGGTAATGGTCA 57.472 30.769 2.30 0.00 43.07 4.02
2916 3273 1.098869 ACCACACACGCATTCACAAA 58.901 45.000 0.00 0.00 0.00 2.83
2917 3274 0.380024 CACCACACACGCATTCACAA 59.620 50.000 0.00 0.00 0.00 3.33
2918 3275 1.443322 CCACCACACACGCATTCACA 61.443 55.000 0.00 0.00 0.00 3.58
2919 3276 1.282570 CCACCACACACGCATTCAC 59.717 57.895 0.00 0.00 0.00 3.18
2920 3277 1.153066 ACCACCACACACGCATTCA 60.153 52.632 0.00 0.00 0.00 2.57
2921 3278 1.282570 CACCACCACACACGCATTC 59.717 57.895 0.00 0.00 0.00 2.67
2922 3279 2.192861 CCACCACCACACACGCATT 61.193 57.895 0.00 0.00 0.00 3.56
2923 3280 2.594303 CCACCACCACACACGCAT 60.594 61.111 0.00 0.00 0.00 4.73
2924 3281 4.102815 ACCACCACCACACACGCA 62.103 61.111 0.00 0.00 0.00 5.24
2925 3282 3.582120 CACCACCACCACACACGC 61.582 66.667 0.00 0.00 0.00 5.34
2926 3283 2.899838 CCACCACCACCACACACG 60.900 66.667 0.00 0.00 0.00 4.49
2927 3284 2.118404 CACCACCACCACCACACAC 61.118 63.158 0.00 0.00 0.00 3.82
2928 3285 2.273776 CACCACCACCACCACACA 59.726 61.111 0.00 0.00 0.00 3.72
2929 3286 2.518349 CCACCACCACCACCACAC 60.518 66.667 0.00 0.00 0.00 3.82
2930 3287 3.018193 ACCACCACCACCACCACA 61.018 61.111 0.00 0.00 0.00 4.17
2931 3288 2.518349 CACCACCACCACCACCAC 60.518 66.667 0.00 0.00 0.00 4.16
2932 3289 3.814906 CCACCACCACCACCACCA 61.815 66.667 0.00 0.00 0.00 4.17
2933 3290 3.816090 ACCACCACCACCACCACC 61.816 66.667 0.00 0.00 0.00 4.61
2934 3291 2.518349 CACCACCACCACCACCAC 60.518 66.667 0.00 0.00 0.00 4.16
2935 3292 3.814906 CCACCACCACCACCACCA 61.815 66.667 0.00 0.00 0.00 4.17
2936 3293 3.816090 ACCACCACCACCACCACC 61.816 66.667 0.00 0.00 0.00 4.61
2937 3294 2.518349 CACCACCACCACCACCAC 60.518 66.667 0.00 0.00 0.00 4.16
2938 3295 3.814906 CCACCACCACCACCACCA 61.815 66.667 0.00 0.00 0.00 4.17
2939 3296 3.816090 ACCACCACCACCACCACC 61.816 66.667 0.00 0.00 0.00 4.61
2940 3297 2.518349 CACCACCACCACCACCAC 60.518 66.667 0.00 0.00 0.00 4.16
2941 3298 3.814906 CCACCACCACCACCACCA 61.815 66.667 0.00 0.00 0.00 4.17
2942 3299 3.816090 ACCACCACCACCACCACC 61.816 66.667 0.00 0.00 0.00 4.61
2943 3300 2.518349 CACCACCACCACCACCAC 60.518 66.667 0.00 0.00 0.00 4.16
2944 3301 3.814906 CCACCACCACCACCACCA 61.815 66.667 0.00 0.00 0.00 4.17
2945 3302 4.596585 CCCACCACCACCACCACC 62.597 72.222 0.00 0.00 0.00 4.61
2946 3303 4.596585 CCCCACCACCACCACCAC 62.597 72.222 0.00 0.00 0.00 4.16
2965 3322 1.773052 GTCCCTGGAAATACTACCCCC 59.227 57.143 0.00 0.00 0.00 5.40
2966 3323 2.484602 TGTCCCTGGAAATACTACCCC 58.515 52.381 0.00 0.00 0.00 4.95
2967 3324 4.579647 TTTGTCCCTGGAAATACTACCC 57.420 45.455 0.00 0.00 0.00 3.69
2968 3325 5.131067 GGATTTGTCCCTGGAAATACTACC 58.869 45.833 0.00 0.00 0.00 3.18
2969 3326 5.751586 TGGATTTGTCCCTGGAAATACTAC 58.248 41.667 0.00 0.00 0.00 2.73
2970 3327 6.184789 GTTGGATTTGTCCCTGGAAATACTA 58.815 40.000 0.00 0.00 0.00 1.82
2971 3328 4.946160 TGGATTTGTCCCTGGAAATACT 57.054 40.909 0.00 0.00 0.00 2.12
2972 3329 4.770010 TGTTGGATTTGTCCCTGGAAATAC 59.230 41.667 0.00 0.00 0.00 1.89
2973 3330 5.004361 TGTTGGATTTGTCCCTGGAAATA 57.996 39.130 0.00 0.00 0.00 1.40
2974 3331 3.855668 TGTTGGATTTGTCCCTGGAAAT 58.144 40.909 0.00 0.00 0.00 2.17
2975 3332 3.320610 TGTTGGATTTGTCCCTGGAAA 57.679 42.857 0.00 0.00 0.00 3.13
2976 3333 2.962421 GTTGTTGGATTTGTCCCTGGAA 59.038 45.455 0.00 0.00 0.00 3.53
2977 3334 2.091610 TGTTGTTGGATTTGTCCCTGGA 60.092 45.455 0.00 0.00 0.00 3.86
2978 3335 2.315176 TGTTGTTGGATTTGTCCCTGG 58.685 47.619 0.00 0.00 0.00 4.45
2979 3336 3.131933 TGTTGTTGTTGGATTTGTCCCTG 59.868 43.478 0.00 0.00 0.00 4.45
2980 3337 3.370104 TGTTGTTGTTGGATTTGTCCCT 58.630 40.909 0.00 0.00 0.00 4.20
2981 3338 3.810310 TGTTGTTGTTGGATTTGTCCC 57.190 42.857 0.00 0.00 0.00 4.46
2982 3339 4.499183 TGTTGTTGTTGTTGGATTTGTCC 58.501 39.130 0.00 0.00 0.00 4.02
2983 3340 6.473397 TTTGTTGTTGTTGTTGGATTTGTC 57.527 33.333 0.00 0.00 0.00 3.18
2984 3341 5.106752 GCTTTGTTGTTGTTGTTGGATTTGT 60.107 36.000 0.00 0.00 0.00 2.83
2985 3342 5.323105 GCTTTGTTGTTGTTGTTGGATTTG 58.677 37.500 0.00 0.00 0.00 2.32
2986 3343 4.394610 GGCTTTGTTGTTGTTGTTGGATTT 59.605 37.500 0.00 0.00 0.00 2.17
2987 3344 3.938334 GGCTTTGTTGTTGTTGTTGGATT 59.062 39.130 0.00 0.00 0.00 3.01
2988 3345 3.197549 AGGCTTTGTTGTTGTTGTTGGAT 59.802 39.130 0.00 0.00 0.00 3.41
2989 3346 2.564947 AGGCTTTGTTGTTGTTGTTGGA 59.435 40.909 0.00 0.00 0.00 3.53
2990 3347 2.929398 GAGGCTTTGTTGTTGTTGTTGG 59.071 45.455 0.00 0.00 0.00 3.77
2991 3348 3.583806 TGAGGCTTTGTTGTTGTTGTTG 58.416 40.909 0.00 0.00 0.00 3.33
2992 3349 3.258123 ACTGAGGCTTTGTTGTTGTTGTT 59.742 39.130 0.00 0.00 0.00 2.83
2993 3350 2.825532 ACTGAGGCTTTGTTGTTGTTGT 59.174 40.909 0.00 0.00 0.00 3.32
2994 3351 3.508744 ACTGAGGCTTTGTTGTTGTTG 57.491 42.857 0.00 0.00 0.00 3.33
2995 3352 3.119137 GGAACTGAGGCTTTGTTGTTGTT 60.119 43.478 10.10 0.00 0.00 2.83
2996 3353 2.427095 GGAACTGAGGCTTTGTTGTTGT 59.573 45.455 10.10 0.00 0.00 3.32
2997 3354 2.426738 TGGAACTGAGGCTTTGTTGTTG 59.573 45.455 10.10 0.00 0.00 3.33
2998 3355 2.733956 TGGAACTGAGGCTTTGTTGTT 58.266 42.857 10.10 2.00 0.00 2.83
2999 3356 2.435372 TGGAACTGAGGCTTTGTTGT 57.565 45.000 10.10 0.00 0.00 3.32
3000 3357 3.119173 TGTTTGGAACTGAGGCTTTGTTG 60.119 43.478 10.10 0.00 0.00 3.33
3001 3358 3.096092 TGTTTGGAACTGAGGCTTTGTT 58.904 40.909 5.90 5.90 0.00 2.83
3002 3359 2.733956 TGTTTGGAACTGAGGCTTTGT 58.266 42.857 0.00 0.00 0.00 2.83
3003 3360 3.491447 CCTTGTTTGGAACTGAGGCTTTG 60.491 47.826 0.00 0.00 31.89 2.77
3004 3361 2.695147 CCTTGTTTGGAACTGAGGCTTT 59.305 45.455 0.00 0.00 31.89 3.51
3005 3362 2.310538 CCTTGTTTGGAACTGAGGCTT 58.689 47.619 0.00 0.00 31.89 4.35
3006 3363 1.215423 ACCTTGTTTGGAACTGAGGCT 59.785 47.619 11.22 0.00 38.29 4.58
3007 3364 1.692411 ACCTTGTTTGGAACTGAGGC 58.308 50.000 11.22 0.00 38.29 4.70
3008 3365 3.715628 CAACCTTGTTTGGAACTGAGG 57.284 47.619 10.27 10.27 39.62 3.86
3035 3698 5.336055 CGTCTGAGATGGTTTCAACTCTAGT 60.336 44.000 0.00 0.00 41.57 2.57
3322 4279 7.882791 TCATGGCTAGTAAGTTGAATGAAAAGA 59.117 33.333 0.00 0.00 0.00 2.52
3491 4448 2.656947 AAAGGCTGCCAACTCAGTAA 57.343 45.000 22.65 0.00 36.49 2.24
3674 4632 1.280710 ACAACACACTGGACCACTTCA 59.719 47.619 0.00 0.00 0.00 3.02
3762 4720 6.109359 CAGACTGGTGACCCTTATAAAGAAG 58.891 44.000 0.00 0.00 0.00 2.85
3938 4896 3.713826 ATAAGCCCGAGACCTTTTTCA 57.286 42.857 0.00 0.00 0.00 2.69
4152 5110 5.944013 TCGAGACATAGAATATAGCTGCAC 58.056 41.667 1.02 0.00 0.00 4.57
4230 5188 6.153340 GGTGGATGTTAGTACAGTACTTACCA 59.847 42.308 21.66 17.64 37.48 3.25
4231 5189 6.567959 GGTGGATGTTAGTACAGTACTTACC 58.432 44.000 21.66 15.92 37.48 2.85
4697 5776 7.081526 AGTACACAGAATCAATTGAATGAGC 57.918 36.000 13.09 0.61 31.76 4.26
4825 5904 7.647907 AGTAGTACCACATAAACAAGTTTCG 57.352 36.000 0.81 0.00 34.23 3.46
4843 5922 9.512588 GGATAGGCATGTTAGTACTTAGTAGTA 57.487 37.037 0.00 3.03 35.78 1.82
4844 5923 7.174599 CGGATAGGCATGTTAGTACTTAGTAGT 59.825 40.741 0.00 5.02 38.44 2.73
4845 5924 7.361885 CCGGATAGGCATGTTAGTACTTAGTAG 60.362 44.444 0.00 0.00 0.00 2.57
4846 5925 6.432162 CCGGATAGGCATGTTAGTACTTAGTA 59.568 42.308 0.00 0.00 0.00 1.82
4847 5926 5.243283 CCGGATAGGCATGTTAGTACTTAGT 59.757 44.000 0.00 0.00 0.00 2.24
4848 5927 5.710984 CCGGATAGGCATGTTAGTACTTAG 58.289 45.833 0.00 0.00 0.00 2.18
4849 5928 5.717078 CCGGATAGGCATGTTAGTACTTA 57.283 43.478 0.00 0.00 0.00 2.24
4850 5929 4.602340 CCGGATAGGCATGTTAGTACTT 57.398 45.455 0.00 0.00 0.00 2.24
4863 5942 2.628178 TCACTTGTATCAGCCGGATAGG 59.372 50.000 5.05 0.00 39.13 2.57
5146 6226 4.283722 AGGATATATTGACAACGGGGAGTC 59.716 45.833 0.00 0.00 35.37 3.36
5444 6525 3.679389 AGATTCACTCATTTGCTCCGTT 58.321 40.909 0.00 0.00 0.00 4.44
5489 6571 7.509141 TTCCAATACGAACTACATACGGATA 57.491 36.000 0.00 0.00 30.15 2.59
5500 6582 9.152595 GTCTTTTTAGAGATTCCAATACGAACT 57.847 33.333 0.00 0.00 0.00 3.01
5501 6583 9.152595 AGTCTTTTTAGAGATTCCAATACGAAC 57.847 33.333 0.00 0.00 0.00 3.95
5502 6584 9.720769 AAGTCTTTTTAGAGATTCCAATACGAA 57.279 29.630 0.00 0.00 0.00 3.85
5625 6707 9.909644 GTACTGTAACTGTTCTTCTGATCTAAA 57.090 33.333 0.00 0.00 0.00 1.85
5626 6708 9.298250 AGTACTGTAACTGTTCTTCTGATCTAA 57.702 33.333 0.00 0.00 0.00 2.10
5627 6709 8.731605 CAGTACTGTAACTGTTCTTCTGATCTA 58.268 37.037 15.06 0.00 41.63 1.98
5628 6710 7.448777 TCAGTACTGTAACTGTTCTTCTGATCT 59.551 37.037 21.99 0.00 45.78 2.75
5629 6711 7.594714 TCAGTACTGTAACTGTTCTTCTGATC 58.405 38.462 21.99 0.00 45.78 2.92
5665 6754 4.393062 AGAATCAACGGTTGCAAGTCATAG 59.607 41.667 15.89 0.00 0.00 2.23
5677 6766 4.002906 TGAACTAAGCAGAATCAACGGT 57.997 40.909 0.00 0.00 0.00 4.83
5718 6807 4.994220 TGCAATTAAGCAGCAAACATTG 57.006 36.364 0.00 0.00 40.11 2.82
5973 7064 1.697284 TGGCCACATTGCACAGTTTA 58.303 45.000 0.00 0.00 0.00 2.01
6029 7120 2.291735 TGAGCCACACCATTCATCCATT 60.292 45.455 0.00 0.00 0.00 3.16
6096 7187 9.458374 GTGGAAATTATACCGAACCAATATTTG 57.542 33.333 0.00 0.00 0.00 2.32
6267 7363 5.989477 ACTGAACAAAGCAGGCTACATATA 58.011 37.500 0.00 0.00 37.69 0.86
6268 7364 4.848357 ACTGAACAAAGCAGGCTACATAT 58.152 39.130 0.00 0.00 37.69 1.78
6300 7396 3.207474 GCAACCAGCTCATGTTACAAG 57.793 47.619 0.00 0.00 41.15 3.16
6422 7519 4.589908 TGAACTATTGAAAGGGAAGCCTC 58.410 43.478 0.00 0.00 0.00 4.70
6507 7672 2.158415 AGCCACTCATCAAATATGGGGG 60.158 50.000 0.00 0.00 0.00 5.40
6508 7673 3.234234 AGCCACTCATCAAATATGGGG 57.766 47.619 0.00 0.00 0.00 4.96
6549 7714 1.196354 GATGCATAGGAAGCGCATGTC 59.804 52.381 11.47 3.32 46.01 3.06
6586 7751 5.334414 GCGACTCATGAACTTCTGTTTCAAT 60.334 40.000 0.00 0.00 36.39 2.57
6608 7773 1.806542 AGACTGTACAGGCAAATTGCG 59.193 47.619 30.11 1.47 46.21 4.85
6786 7951 3.226347 GTGTGCAAGTTCGAAATAGTGC 58.774 45.455 13.74 13.74 0.00 4.40
6795 7960 3.532138 CACAAGGTGTGCAAGTTCG 57.468 52.632 0.00 0.00 41.89 3.95
6844 8009 9.384682 CACTTTGTTGCATTTCAATATTTTTCC 57.615 29.630 0.00 0.00 36.99 3.13
6857 8022 1.535860 GGCGTGACACTTTGTTGCATT 60.536 47.619 3.68 0.00 0.00 3.56
6864 8029 1.010125 CCAACGGCGTGACACTTTG 60.010 57.895 15.70 5.90 0.00 2.77
6910 8075 2.849880 TAATTCTCTTTGCCATGCGC 57.150 45.000 0.00 0.00 38.31 6.09
6911 8076 4.095410 TGTTAATTCTCTTTGCCATGCG 57.905 40.909 0.00 0.00 0.00 4.73
6912 8077 6.101332 TCATTGTTAATTCTCTTTGCCATGC 58.899 36.000 0.00 0.00 0.00 4.06
6913 8078 8.712285 ATTCATTGTTAATTCTCTTTGCCATG 57.288 30.769 0.00 0.00 0.00 3.66
7007 8172 2.975851 CAGAACGCAGAAAAGATGCAAC 59.024 45.455 0.00 0.00 44.05 4.17
7008 8173 2.877786 TCAGAACGCAGAAAAGATGCAA 59.122 40.909 0.00 0.00 44.05 4.08
7009 8174 2.481568 CTCAGAACGCAGAAAAGATGCA 59.518 45.455 0.00 0.00 44.05 3.96
7010 8175 2.738846 TCTCAGAACGCAGAAAAGATGC 59.261 45.455 0.00 0.00 40.35 3.91
7013 8178 3.187227 GCAATCTCAGAACGCAGAAAAGA 59.813 43.478 0.00 0.00 0.00 2.52
7014 8179 3.058708 TGCAATCTCAGAACGCAGAAAAG 60.059 43.478 0.00 0.00 0.00 2.27
7071 8246 2.302733 TGCTGCTATTCCTGTCAACTGA 59.697 45.455 0.00 0.00 0.00 3.41
7092 8267 1.340697 GGCAGGGGGAAACGAAGTATT 60.341 52.381 0.00 0.00 45.00 1.89
7107 8282 0.329261 TGTCCTCCAAATCTGGCAGG 59.671 55.000 15.73 0.00 43.17 4.85
7152 8329 1.453155 ACAAATGTTAGGCAGCTCCG 58.547 50.000 0.00 0.00 40.77 4.63
7154 8331 3.923017 ACAACAAATGTTAGGCAGCTC 57.077 42.857 0.00 0.00 40.06 4.09
7180 8357 6.703607 CACTTGATCAGCTATAGGTTAACAGG 59.296 42.308 8.10 3.08 0.00 4.00
7351 8532 3.009363 TCAGCATCCACATCTCAAGGAAA 59.991 43.478 0.00 0.00 34.62 3.13
7352 8533 2.573009 TCAGCATCCACATCTCAAGGAA 59.427 45.455 0.00 0.00 34.62 3.36
7353 8534 2.169978 CTCAGCATCCACATCTCAAGGA 59.830 50.000 0.00 0.00 35.59 3.36
7449 8630 7.173218 CCAGTAAATGTCTACAGAACACACATT 59.827 37.037 0.00 0.00 38.94 2.71
7464 8645 6.183360 CGACCAACCTTTATCCAGTAAATGTC 60.183 42.308 0.00 0.00 32.25 3.06
7507 8688 0.673985 AAGTTTTCCAGAAAGCGGCC 59.326 50.000 0.00 0.00 36.75 6.13
7513 8694 0.309612 GCGGCGAAGTTTTCCAGAAA 59.690 50.000 12.98 0.00 0.00 2.52
7514 8695 1.512156 GGCGGCGAAGTTTTCCAGAA 61.512 55.000 12.98 0.00 0.00 3.02
7515 8696 1.964373 GGCGGCGAAGTTTTCCAGA 60.964 57.895 12.98 0.00 0.00 3.86
7516 8697 1.912371 GAGGCGGCGAAGTTTTCCAG 61.912 60.000 12.98 0.00 0.00 3.86
7517 8698 1.964373 GAGGCGGCGAAGTTTTCCA 60.964 57.895 12.98 0.00 0.00 3.53
7518 8699 0.390735 TAGAGGCGGCGAAGTTTTCC 60.391 55.000 12.98 0.00 0.00 3.13
7519 8700 0.720027 GTAGAGGCGGCGAAGTTTTC 59.280 55.000 12.98 0.00 0.00 2.29
7520 8701 0.672711 GGTAGAGGCGGCGAAGTTTT 60.673 55.000 12.98 0.00 0.00 2.43
7521 8702 1.079336 GGTAGAGGCGGCGAAGTTT 60.079 57.895 12.98 0.00 0.00 2.66
7522 8703 1.982938 AGGTAGAGGCGGCGAAGTT 60.983 57.895 12.98 0.00 0.00 2.66
7523 8704 2.362632 AGGTAGAGGCGGCGAAGT 60.363 61.111 12.98 0.00 0.00 3.01
7524 8705 2.105128 CAGGTAGAGGCGGCGAAG 59.895 66.667 12.98 0.00 0.00 3.79
7525 8706 2.842188 TACCAGGTAGAGGCGGCGAA 62.842 60.000 12.98 0.00 0.00 4.70
7526 8707 3.348554 TACCAGGTAGAGGCGGCGA 62.349 63.158 12.98 0.00 0.00 5.54
7527 8708 2.831742 TACCAGGTAGAGGCGGCG 60.832 66.667 0.51 0.51 0.00 6.46
7528 8709 2.499827 CCTACCAGGTAGAGGCGGC 61.500 68.421 26.32 0.00 38.29 6.53
7529 8710 0.396695 TTCCTACCAGGTAGAGGCGG 60.397 60.000 26.32 11.44 38.29 6.13
7530 8711 0.745468 GTTCCTACCAGGTAGAGGCG 59.255 60.000 26.32 10.75 38.29 5.52
7531 8712 1.121378 GGTTCCTACCAGGTAGAGGC 58.879 60.000 26.32 14.82 44.36 4.70
7532 8713 1.400737 CGGTTCCTACCAGGTAGAGG 58.599 60.000 26.32 14.73 45.31 3.69
7533 8714 1.064166 TCCGGTTCCTACCAGGTAGAG 60.064 57.143 26.32 16.40 45.31 2.43
7534 8715 1.002069 TCCGGTTCCTACCAGGTAGA 58.998 55.000 26.32 10.81 45.31 2.59
7535 8716 1.962100 GATCCGGTTCCTACCAGGTAG 59.038 57.143 18.89 18.89 45.31 3.18
7536 8717 1.412074 GGATCCGGTTCCTACCAGGTA 60.412 57.143 22.23 0.00 45.31 3.08
7537 8718 0.690077 GGATCCGGTTCCTACCAGGT 60.690 60.000 22.23 0.00 45.31 4.00
7538 8719 1.408453 GGGATCCGGTTCCTACCAGG 61.408 65.000 26.93 0.00 45.31 4.45
7539 8720 0.398664 AGGGATCCGGTTCCTACCAG 60.399 60.000 26.93 0.00 45.31 4.00
7540 8721 0.935942 TAGGGATCCGGTTCCTACCA 59.064 55.000 26.93 10.23 45.31 3.25
7541 8722 1.336131 GTAGGGATCCGGTTCCTACC 58.664 60.000 26.93 13.46 44.29 3.18
7543 8724 0.935942 TGGTAGGGATCCGGTTCCTA 59.064 55.000 26.93 19.75 35.97 2.94
7544 8725 0.398664 CTGGTAGGGATCCGGTTCCT 60.399 60.000 26.93 20.65 35.97 3.36
7545 8726 1.408453 CCTGGTAGGGATCCGGTTCC 61.408 65.000 21.54 21.54 34.83 3.62
7546 8727 2.134092 CCTGGTAGGGATCCGGTTC 58.866 63.158 5.45 1.67 0.00 3.62
7571 8752 1.269012 TCCACCCGTACAACCTAAGG 58.731 55.000 0.00 0.00 0.00 2.69
7574 8755 1.203162 TCCTTCCACCCGTACAACCTA 60.203 52.381 0.00 0.00 0.00 3.08
7583 8764 1.689233 TCATCCCTCCTTCCACCCG 60.689 63.158 0.00 0.00 0.00 5.28
7608 8789 4.003788 CCGGCGACCACACCTTCT 62.004 66.667 9.30 0.00 0.00 2.85
7648 8832 4.605967 CTCTCTCTCTCGCGCGCC 62.606 72.222 27.95 8.11 0.00 6.53
7654 8838 2.394708 CTACGCTCTCTCTCTCTCTCG 58.605 57.143 0.00 0.00 0.00 4.04
7661 8845 2.548295 CGCCCCTACGCTCTCTCTC 61.548 68.421 0.00 0.00 0.00 3.20
7662 8846 2.517402 CGCCCCTACGCTCTCTCT 60.517 66.667 0.00 0.00 0.00 3.10
7663 8847 3.597728 CCGCCCCTACGCTCTCTC 61.598 72.222 0.00 0.00 0.00 3.20
7705 10811 0.981183 TTTGCTCGGCTTCCTTAGGA 59.019 50.000 0.00 0.00 0.00 2.94
7736 11182 4.501743 GGACCCGTTTTGGAATTAAGCAAA 60.502 41.667 0.00 0.00 42.00 3.68
7746 11192 1.540797 CGTGTAAGGACCCGTTTTGGA 60.541 52.381 0.00 0.00 42.00 3.53
7807 11253 8.092687 GGCCCAGTTTATCTTATCGTTATTAGA 58.907 37.037 0.00 0.00 0.00 2.10
7835 11281 9.982651 CATATTAAGAGCTTAGCCAGTTAGTTA 57.017 33.333 0.00 0.00 0.00 2.24
7852 11299 7.004555 AGATGTTATGACCGGCATATTAAGA 57.995 36.000 16.09 6.01 39.15 2.10
7854 11301 7.004555 AGAGATGTTATGACCGGCATATTAA 57.995 36.000 16.09 8.08 39.15 1.40
7908 11355 1.003355 TTCCCAGCCTTTCAGCTCG 60.003 57.895 0.00 0.00 42.61 5.03
7909 11356 0.326264 TCTTCCCAGCCTTTCAGCTC 59.674 55.000 0.00 0.00 42.61 4.09
7910 11357 0.998145 ATCTTCCCAGCCTTTCAGCT 59.002 50.000 0.00 0.00 46.45 4.24
7911 11358 1.340405 TGATCTTCCCAGCCTTTCAGC 60.340 52.381 0.00 0.00 0.00 4.26
7912 11359 2.751806 GTTGATCTTCCCAGCCTTTCAG 59.248 50.000 0.00 0.00 0.00 3.02
7913 11360 2.795329 GTTGATCTTCCCAGCCTTTCA 58.205 47.619 0.00 0.00 0.00 2.69
7914 11361 1.740025 CGTTGATCTTCCCAGCCTTTC 59.260 52.381 0.00 0.00 0.00 2.62
7915 11362 1.614317 CCGTTGATCTTCCCAGCCTTT 60.614 52.381 0.00 0.00 0.00 3.11
7916 11363 0.035056 CCGTTGATCTTCCCAGCCTT 60.035 55.000 0.00 0.00 0.00 4.35
7917 11364 1.201429 ACCGTTGATCTTCCCAGCCT 61.201 55.000 0.00 0.00 0.00 4.58
7918 11365 1.026718 CACCGTTGATCTTCCCAGCC 61.027 60.000 0.00 0.00 0.00 4.85
7919 11366 0.036388 TCACCGTTGATCTTCCCAGC 60.036 55.000 0.00 0.00 0.00 4.85
7920 11367 1.726853 GTCACCGTTGATCTTCCCAG 58.273 55.000 0.00 0.00 33.11 4.45
7921 11368 0.037697 CGTCACCGTTGATCTTCCCA 60.038 55.000 0.00 0.00 33.11 4.37
7922 11369 0.245539 TCGTCACCGTTGATCTTCCC 59.754 55.000 0.00 0.00 33.11 3.97
7923 11370 1.630148 CTCGTCACCGTTGATCTTCC 58.370 55.000 0.00 0.00 33.11 3.46
7924 11371 0.992802 GCTCGTCACCGTTGATCTTC 59.007 55.000 0.00 0.00 33.11 2.87
7925 11372 0.603569 AGCTCGTCACCGTTGATCTT 59.396 50.000 0.00 0.00 33.11 2.40
7926 11373 0.109086 CAGCTCGTCACCGTTGATCT 60.109 55.000 0.00 0.00 33.11 2.75
7927 11374 1.078759 CCAGCTCGTCACCGTTGATC 61.079 60.000 0.00 0.00 33.11 2.92
7928 11375 1.079819 CCAGCTCGTCACCGTTGAT 60.080 57.895 0.00 0.00 33.11 2.57
7929 11376 1.740332 TTCCAGCTCGTCACCGTTGA 61.740 55.000 0.00 0.00 35.01 3.18
7930 11377 1.284982 CTTCCAGCTCGTCACCGTTG 61.285 60.000 0.00 0.00 35.01 4.10
7931 11378 1.006102 CTTCCAGCTCGTCACCGTT 60.006 57.895 0.00 0.00 35.01 4.44
7932 11379 2.651361 CTTCCAGCTCGTCACCGT 59.349 61.111 0.00 0.00 35.01 4.83
7933 11380 2.125912 CCTTCCAGCTCGTCACCG 60.126 66.667 0.00 0.00 0.00 4.94
7934 11381 2.435059 GCCTTCCAGCTCGTCACC 60.435 66.667 0.00 0.00 0.00 4.02
7935 11382 1.739562 CAGCCTTCCAGCTCGTCAC 60.740 63.158 0.00 0.00 42.61 3.67
7936 11383 2.659016 CAGCCTTCCAGCTCGTCA 59.341 61.111 0.00 0.00 42.61 4.35
7937 11384 1.605058 TACCAGCCTTCCAGCTCGTC 61.605 60.000 0.00 0.00 42.61 4.20
7938 11385 1.192146 TTACCAGCCTTCCAGCTCGT 61.192 55.000 0.00 0.00 42.61 4.18
7939 11386 0.460987 CTTACCAGCCTTCCAGCTCG 60.461 60.000 0.00 0.00 42.61 5.03
7952 11399 0.108520 GGCGACCGTTGATCTTACCA 60.109 55.000 0.00 0.00 0.00 3.25
7955 11402 2.070783 GTTTGGCGACCGTTGATCTTA 58.929 47.619 0.00 0.00 0.00 2.10
8019 11466 2.053747 ACATTAAGGAGGACCCACCA 57.946 50.000 5.35 0.00 42.04 4.17
8022 11469 4.600111 ACAAACTACATTAAGGAGGACCCA 59.400 41.667 0.00 0.00 37.41 4.51
8033 11481 4.781087 ACCTGGAGGCTACAAACTACATTA 59.219 41.667 0.00 0.00 39.32 1.90
8042 11490 3.245658 ACTCTTCTACCTGGAGGCTACAA 60.246 47.826 0.00 0.00 39.32 2.41
8045 11493 2.421670 CGACTCTTCTACCTGGAGGCTA 60.422 54.545 0.00 0.00 39.32 3.93
8083 11531 0.392706 TCCGACGAGCCCTACGTATA 59.607 55.000 0.00 0.00 43.97 1.47
8084 11532 0.883814 CTCCGACGAGCCCTACGTAT 60.884 60.000 0.00 0.00 43.97 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.