Multiple sequence alignment - TraesCS2B01G527500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G527500 chr2B 100.000 3517 0 0 1 3517 721930870 721927354 0.000000e+00 6495.0
1 TraesCS2B01G527500 chr2B 84.472 483 43 11 1 452 513251653 513252134 7.920000e-122 448.0
2 TraesCS2B01G527500 chr2B 100.000 165 0 0 3854 4018 721927017 721926853 5.050000e-79 305.0
3 TraesCS2B01G527500 chr2D 91.589 1391 87 12 1867 3243 594483677 594482303 0.000000e+00 1893.0
4 TraesCS2B01G527500 chr2D 92.865 911 39 13 521 1418 594484968 594484071 0.000000e+00 1299.0
5 TraesCS2B01G527500 chr2D 86.101 554 37 17 1 521 594485568 594485022 9.750000e-156 560.0
6 TraesCS2B01G527500 chr2D 86.061 165 19 1 3854 4018 594479564 594479404 1.480000e-39 174.0
7 TraesCS2B01G527500 chr2D 87.342 79 8 2 1720 1797 23414688 23414765 5.530000e-14 89.8
8 TraesCS2B01G527500 chr2D 81.132 106 18 2 2317 2421 645559772 645559668 2.570000e-12 84.2
9 TraesCS2B01G527500 chr2A 95.017 1144 43 7 1913 3045 729136420 729135280 0.000000e+00 1784.0
10 TraesCS2B01G527500 chr2A 90.505 990 37 21 521 1494 729137375 729136427 0.000000e+00 1254.0
11 TraesCS2B01G527500 chr2A 84.278 547 44 20 4 519 729137966 729137431 2.790000e-136 496.0
12 TraesCS2B01G527500 chr2A 80.303 462 63 18 17 451 40836495 40836955 1.390000e-84 324.0
13 TraesCS2B01G527500 chr2A 87.984 258 22 2 1 249 44037662 44037919 3.040000e-76 296.0
14 TraesCS2B01G527500 chr2A 90.541 222 20 1 1576 1796 745830385 745830164 3.930000e-75 292.0
15 TraesCS2B01G527500 chr2A 89.474 209 22 0 3079 3287 729135213 729135005 8.560000e-67 265.0
16 TraesCS2B01G527500 chr2A 88.649 185 18 3 267 450 44038149 44038331 5.230000e-54 222.0
17 TraesCS2B01G527500 chr2A 79.412 306 48 8 19 309 84747180 84746875 6.810000e-48 202.0
18 TraesCS2B01G527500 chr2A 90.476 105 10 0 3318 3422 729134613 729134509 5.410000e-29 139.0
19 TraesCS2B01G527500 chr3A 85.507 483 38 6 1 452 240366848 240366367 3.630000e-130 475.0
20 TraesCS2B01G527500 chr5D 83.437 483 42 15 1 452 341228 340753 8.030000e-112 414.0
21 TraesCS2B01G527500 chr5D 81.211 479 57 21 6 452 534009768 534010245 4.940000e-94 355.0
22 TraesCS2B01G527500 chr5D 78.351 291 34 20 188 452 506940433 506940720 1.160000e-35 161.0
23 TraesCS2B01G527500 chr5D 97.059 34 1 0 957 990 10368487 10368454 1.560000e-04 58.4
24 TraesCS2B01G527500 chr4A 83.544 474 46 11 1 443 625089047 625089519 8.030000e-112 414.0
25 TraesCS2B01G527500 chr3D 81.551 477 55 17 8 452 498892016 498891541 2.950000e-96 363.0
26 TraesCS2B01G527500 chr5A 80.574 453 68 15 17 452 31090020 31090469 8.320000e-87 331.0
27 TraesCS2B01G527500 chr5A 82.493 377 34 10 1 346 658358289 658357914 6.530000e-78 302.0
28 TraesCS2B01G527500 chr5A 81.467 259 38 5 14 262 36078714 36078972 1.890000e-48 204.0
29 TraesCS2B01G527500 chr5A 86.747 83 9 2 1712 1794 4981202 4981282 1.540000e-14 91.6
30 TraesCS2B01G527500 chr1D 88.930 271 21 2 3 264 414343839 414344109 3.870000e-85 326.0
31 TraesCS2B01G527500 chr7A 91.284 218 17 2 1576 1792 55441546 55441762 3.040000e-76 296.0
32 TraesCS2B01G527500 chr7A 86.747 83 9 2 1720 1802 472135123 472135203 1.540000e-14 91.6
33 TraesCS2B01G527500 chr7A 97.368 38 1 0 951 988 421470503 421470540 9.320000e-07 65.8
34 TraesCS2B01G527500 chr1B 78.306 484 60 21 1 452 111059599 111060069 1.840000e-68 270.0
35 TraesCS2B01G527500 chrUn 76.644 441 67 25 42 452 297506675 297507109 1.130000e-50 211.0
36 TraesCS2B01G527500 chr3B 79.675 246 37 11 21 255 807315107 807314864 8.930000e-37 165.0
37 TraesCS2B01G527500 chr3B 88.608 79 7 2 1720 1797 740043151 740043074 1.190000e-15 95.3
38 TraesCS2B01G527500 chr3B 85.714 56 8 0 755 810 15522265 15522320 4.340000e-05 60.2
39 TraesCS2B01G527500 chr4D 81.768 181 28 4 809 987 322903370 322903547 3.240000e-31 147.0
40 TraesCS2B01G527500 chr4B 86.486 74 8 2 1720 1793 91139213 91139142 3.330000e-11 80.5
41 TraesCS2B01G527500 chr7D 94.737 38 2 0 951 988 375035790 375035827 4.340000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G527500 chr2B 721926853 721930870 4017 True 3400.0 6495 100.0000 1 4018 2 chr2B.!!$R1 4017
1 TraesCS2B01G527500 chr2D 594479404 594485568 6164 True 981.5 1893 89.1540 1 4018 4 chr2D.!!$R2 4017
2 TraesCS2B01G527500 chr2A 729134509 729137966 3457 True 787.6 1784 89.9500 4 3422 5 chr2A.!!$R3 3418
3 TraesCS2B01G527500 chr2A 44037662 44038331 669 False 259.0 296 88.3165 1 450 2 chr2A.!!$F2 449

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
677 958 0.304705 CACACTGGCACGTGTCTTTC 59.695 55.0 22.43 1.18 42.12 2.62 F
1038 1350 0.032217 AAGAGGAGGAGGAGCAGGAG 60.032 60.0 0.00 0.00 0.00 3.69 F
2464 2915 0.030235 CATGATGCGAATGCTGGTGG 59.970 55.0 0.00 0.00 43.34 4.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1763 2160 0.249573 CAAAGCAAGGCACCAACAGG 60.250 55.0 0.0 0.0 0.0 4.00 R
2966 3417 0.033011 GAGAGGGGTGTAGAGCTGGA 60.033 60.0 0.0 0.0 0.0 3.86 R
3435 4322 0.179006 GGATCTGGCCCAAGTCATCC 60.179 60.0 0.0 0.0 0.0 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 0.851469 ATGGGATTGCTCAGCCTCAT 59.149 50.000 0.00 0.00 0.00 2.90
44 45 0.465824 GATTGCTCAGCCTCATGCCT 60.466 55.000 0.00 0.00 42.71 4.75
109 110 1.153823 AGCGGATGTCGTTTCCTCG 60.154 57.895 0.00 0.00 41.72 4.63
152 153 2.994995 TTGCGCCCCTCTTCGAGA 60.995 61.111 4.18 0.00 0.00 4.04
163 164 2.102252 CCTCTTCGAGATCAGGGGAAAG 59.898 54.545 0.00 0.00 31.27 2.62
165 166 1.484240 CTTCGAGATCAGGGGAAAGCT 59.516 52.381 0.00 0.00 0.00 3.74
219 231 3.846360 CGTCGTATTCCTTCTTGAAGGT 58.154 45.455 23.78 11.98 40.81 3.50
258 460 3.003763 GTCCCCGGTCTTGGCTCT 61.004 66.667 0.00 0.00 0.00 4.09
264 466 2.435059 GGTCTTGGCTCTGGCGAC 60.435 66.667 0.00 0.00 39.81 5.19
265 467 2.343758 GTCTTGGCTCTGGCGACA 59.656 61.111 0.00 0.00 39.81 4.35
300 524 4.216708 TGTTTGGGTTTGGTAGGTTTAGG 58.783 43.478 0.00 0.00 0.00 2.69
305 529 2.555325 GGTTTGGTAGGTTTAGGTGTGC 59.445 50.000 0.00 0.00 0.00 4.57
336 560 0.980754 TTCGGGCTGAGCATCCCTTA 60.981 55.000 6.82 0.00 40.41 2.69
350 574 5.367937 AGCATCCCTTATCTTTTCTGCTCTA 59.632 40.000 0.00 0.00 33.73 2.43
373 597 2.416836 GCACTATGTTCACGCCTGTCTA 60.417 50.000 0.00 0.00 0.00 2.59
382 606 2.434134 CGCCTGTCTACGTTCGTGC 61.434 63.158 8.14 1.06 0.00 5.34
388 612 1.540707 TGTCTACGTTCGTGCCATGTA 59.459 47.619 8.14 0.00 0.00 2.29
406 630 7.402941 TGCCATGTATTGTATCCCTATCTGTAT 59.597 37.037 0.00 0.00 0.00 2.29
438 662 9.887629 CTACTCCTTCTATCAATGCAATGATAT 57.112 33.333 21.75 10.07 40.51 1.63
461 685 4.216324 CAAACTTTGCGTTGCATATTCG 57.784 40.909 0.00 0.00 38.76 3.34
462 686 3.552604 AACTTTGCGTTGCATATTCGT 57.447 38.095 0.00 0.00 38.76 3.85
463 687 3.117434 ACTTTGCGTTGCATATTCGTC 57.883 42.857 0.00 0.00 38.76 4.20
464 688 2.482336 ACTTTGCGTTGCATATTCGTCA 59.518 40.909 0.00 0.00 38.76 4.35
465 689 3.058570 ACTTTGCGTTGCATATTCGTCAA 60.059 39.130 0.00 0.00 38.76 3.18
466 690 3.544356 TTGCGTTGCATATTCGTCAAA 57.456 38.095 0.00 0.00 38.76 2.69
510 734 4.141620 ACATCATCCACACCCTCTGTAATC 60.142 45.833 0.00 0.00 0.00 1.75
596 877 0.750850 CTCGCGGGGAAGGAAGAATA 59.249 55.000 6.13 0.00 0.00 1.75
597 878 0.750850 TCGCGGGGAAGGAAGAATAG 59.249 55.000 6.13 0.00 0.00 1.73
598 879 0.750850 CGCGGGGAAGGAAGAATAGA 59.249 55.000 0.00 0.00 0.00 1.98
665 946 4.201851 CGGATGCTTTAAGATTCACACTGG 60.202 45.833 0.00 0.00 0.00 4.00
677 958 0.304705 CACACTGGCACGTGTCTTTC 59.695 55.000 22.43 1.18 42.12 2.62
693 974 6.570692 GTGTCTTTCGATGGAATAGGTCTAA 58.429 40.000 0.00 0.00 30.88 2.10
698 979 9.363401 TCTTTCGATGGAATAGGTCTAAAGATA 57.637 33.333 0.00 0.00 30.88 1.98
718 999 0.601558 GTTAGCGTGAGTCCAGGTCA 59.398 55.000 0.00 0.00 0.00 4.02
719 1000 0.601558 TTAGCGTGAGTCCAGGTCAC 59.398 55.000 0.74 0.74 40.87 3.67
725 1006 2.166459 CGTGAGTCCAGGTCACATATGT 59.834 50.000 1.41 1.41 43.90 2.29
753 1042 1.384525 TCCTTTTTCCCGTGTGTGTG 58.615 50.000 0.00 0.00 0.00 3.82
822 1111 5.279056 GCCTAGCTTAGTATCGATCCTGTTT 60.279 44.000 0.00 0.00 0.00 2.83
917 1209 0.764890 TCCACCTGCTAGCTTGTGTT 59.235 50.000 25.35 2.35 0.00 3.32
938 1247 1.881973 CTTGTTGAGGCTAGCTTGCAA 59.118 47.619 21.53 13.16 34.04 4.08
941 1250 1.198637 GTTGAGGCTAGCTTGCAAGTG 59.801 52.381 26.55 17.55 34.04 3.16
1033 1345 2.791868 GCCGAAGAGGAGGAGGAGC 61.792 68.421 0.00 0.00 45.00 4.70
1034 1346 1.380515 CCGAAGAGGAGGAGGAGCA 60.381 63.158 0.00 0.00 45.00 4.26
1035 1347 1.391157 CCGAAGAGGAGGAGGAGCAG 61.391 65.000 0.00 0.00 45.00 4.24
1036 1348 1.391157 CGAAGAGGAGGAGGAGCAGG 61.391 65.000 0.00 0.00 0.00 4.85
1037 1349 0.032615 GAAGAGGAGGAGGAGCAGGA 60.033 60.000 0.00 0.00 0.00 3.86
1038 1350 0.032217 AAGAGGAGGAGGAGCAGGAG 60.032 60.000 0.00 0.00 0.00 3.69
1046 1358 0.972983 GAGGAGCAGGAGCAGGTGTA 60.973 60.000 0.00 0.00 45.49 2.90
1079 1391 2.148916 AAATCACTTGACGAGTCGCA 57.851 45.000 13.59 9.02 36.10 5.10
1223 1535 2.075426 ATCTCCGCACGCATCGATGA 62.075 55.000 29.20 4.80 0.00 2.92
1281 1593 4.914983 TGAAATTGATGCTGAGACCTTCT 58.085 39.130 0.00 0.00 0.00 2.85
1402 1717 2.079925 ACATCTTTTCTTGCTCTCGCC 58.920 47.619 0.00 0.00 34.43 5.54
1494 1891 5.065988 TGGCGGATTAGTCTTTTCTTTATGC 59.934 40.000 0.00 0.00 0.00 3.14
1496 1893 5.297029 GCGGATTAGTCTTTTCTTTATGCCT 59.703 40.000 0.00 0.00 0.00 4.75
1498 1895 7.012044 GCGGATTAGTCTTTTCTTTATGCCTAA 59.988 37.037 0.00 0.00 0.00 2.69
1506 1903 9.290483 GTCTTTTCTTTATGCCTAATTAGTTGC 57.710 33.333 11.50 8.92 0.00 4.17
1507 1904 9.243105 TCTTTTCTTTATGCCTAATTAGTTGCT 57.757 29.630 11.50 2.51 0.00 3.91
1508 1905 9.860898 CTTTTCTTTATGCCTAATTAGTTGCTT 57.139 29.630 11.50 8.94 0.00 3.91
1532 1929 8.867112 TTATAAGTAGTAGCACAATGTGTAGC 57.133 34.615 15.36 0.26 35.75 3.58
1533 1930 4.801330 AGTAGTAGCACAATGTGTAGCA 57.199 40.909 15.36 0.00 35.75 3.49
1534 1931 4.495422 AGTAGTAGCACAATGTGTAGCAC 58.505 43.478 15.36 7.76 35.75 4.40
1541 1938 2.030007 CACAATGTGTAGCACTTTGGGG 60.030 50.000 22.67 14.79 46.61 4.96
1547 1944 1.168714 GTAGCACTTTGGGGCTTCAG 58.831 55.000 0.00 0.00 41.41 3.02
1556 1953 1.357137 TGGGGCTTCAGTATCACACA 58.643 50.000 0.00 0.00 0.00 3.72
1569 1966 6.039270 TCAGTATCACACAACCTTTTTCCTTG 59.961 38.462 0.00 0.00 0.00 3.61
1570 1967 5.891551 AGTATCACACAACCTTTTTCCTTGT 59.108 36.000 0.00 0.00 0.00 3.16
1571 1968 4.448537 TCACACAACCTTTTTCCTTGTG 57.551 40.909 7.95 7.95 46.76 3.33
1576 1973 3.447229 ACAACCTTTTTCCTTGTGGTGAG 59.553 43.478 0.00 0.00 34.23 3.51
1577 1974 3.662759 ACCTTTTTCCTTGTGGTGAGA 57.337 42.857 0.00 0.00 34.23 3.27
1580 1977 4.584743 ACCTTTTTCCTTGTGGTGAGAATC 59.415 41.667 0.00 0.00 34.23 2.52
1581 1978 4.829492 CCTTTTTCCTTGTGGTGAGAATCT 59.171 41.667 0.00 0.00 34.92 2.40
1582 1979 5.302823 CCTTTTTCCTTGTGGTGAGAATCTT 59.697 40.000 0.00 0.00 34.92 2.40
1583 1980 5.772825 TTTTCCTTGTGGTGAGAATCTTG 57.227 39.130 0.00 0.00 34.92 3.02
1584 1981 2.783135 TCCTTGTGGTGAGAATCTTGC 58.217 47.619 0.00 0.00 34.92 4.01
1585 1982 2.373169 TCCTTGTGGTGAGAATCTTGCT 59.627 45.455 0.00 0.00 34.92 3.91
1586 1983 3.152341 CCTTGTGGTGAGAATCTTGCTT 58.848 45.455 0.00 0.00 34.92 3.91
1587 1984 3.571401 CCTTGTGGTGAGAATCTTGCTTT 59.429 43.478 0.00 0.00 34.92 3.51
1588 1985 4.320788 CCTTGTGGTGAGAATCTTGCTTTC 60.321 45.833 0.00 0.00 34.92 2.62
1589 1986 3.149196 TGTGGTGAGAATCTTGCTTTCC 58.851 45.455 0.00 0.00 34.92 3.13
1590 1987 3.149196 GTGGTGAGAATCTTGCTTTCCA 58.851 45.455 0.00 0.00 34.92 3.53
1593 1990 4.263639 TGGTGAGAATCTTGCTTTCCAGAT 60.264 41.667 0.00 0.00 34.92 2.90
1594 1991 4.096081 GGTGAGAATCTTGCTTTCCAGATG 59.904 45.833 0.00 0.00 34.92 2.90
1596 1993 5.877012 GTGAGAATCTTGCTTTCCAGATGTA 59.123 40.000 0.00 0.00 34.92 2.29
1597 1994 5.877012 TGAGAATCTTGCTTTCCAGATGTAC 59.123 40.000 0.00 0.00 34.92 2.90
1600 1997 6.597280 AGAATCTTGCTTTCCAGATGTACTTC 59.403 38.462 0.50 0.50 0.00 3.01
1602 1999 5.482908 TCTTGCTTTCCAGATGTACTTCTC 58.517 41.667 8.26 0.00 0.00 2.87
1603 2000 4.207891 TGCTTTCCAGATGTACTTCTCC 57.792 45.455 8.26 0.00 0.00 3.71
1604 2001 3.840666 TGCTTTCCAGATGTACTTCTCCT 59.159 43.478 8.26 0.00 0.00 3.69
1605 2002 4.287067 TGCTTTCCAGATGTACTTCTCCTT 59.713 41.667 8.26 0.00 0.00 3.36
1606 2003 5.483937 TGCTTTCCAGATGTACTTCTCCTTA 59.516 40.000 8.26 0.00 0.00 2.69
1607 2004 6.156949 TGCTTTCCAGATGTACTTCTCCTTAT 59.843 38.462 8.26 0.00 0.00 1.73
1608 2005 7.051000 GCTTTCCAGATGTACTTCTCCTTATT 58.949 38.462 8.26 0.00 0.00 1.40
1611 2008 8.840200 TTCCAGATGTACTTCTCCTTATTAGT 57.160 34.615 8.26 0.00 0.00 2.24
1612 2009 8.466617 TCCAGATGTACTTCTCCTTATTAGTC 57.533 38.462 8.26 0.00 0.00 2.59
1613 2010 8.282982 TCCAGATGTACTTCTCCTTATTAGTCT 58.717 37.037 8.26 0.00 0.00 3.24
1615 2012 9.743057 CAGATGTACTTCTCCTTATTAGTCTTG 57.257 37.037 8.26 0.00 0.00 3.02
1616 2013 8.417884 AGATGTACTTCTCCTTATTAGTCTTGC 58.582 37.037 5.47 0.00 0.00 4.01
1617 2014 7.719871 TGTACTTCTCCTTATTAGTCTTGCT 57.280 36.000 0.00 0.00 0.00 3.91
1618 2015 7.548097 TGTACTTCTCCTTATTAGTCTTGCTG 58.452 38.462 0.00 0.00 0.00 4.41
1619 2016 6.613153 ACTTCTCCTTATTAGTCTTGCTGT 57.387 37.500 0.00 0.00 0.00 4.40
1621 2018 7.100409 ACTTCTCCTTATTAGTCTTGCTGTTC 58.900 38.462 0.00 0.00 0.00 3.18
1622 2019 6.605471 TCTCCTTATTAGTCTTGCTGTTCA 57.395 37.500 0.00 0.00 0.00 3.18
1626 2023 8.948631 TCCTTATTAGTCTTGCTGTTCATTAG 57.051 34.615 0.00 0.00 0.00 1.73
1627 2024 7.495934 TCCTTATTAGTCTTGCTGTTCATTAGC 59.504 37.037 0.00 0.00 41.49 3.09
1632 2029 3.575506 TGCTGTTCATTAGCAGGGG 57.424 52.632 0.00 0.00 45.52 4.79
1635 2032 2.307392 TGCTGTTCATTAGCAGGGGTTA 59.693 45.455 0.00 0.00 45.52 2.85
1637 2034 3.954258 GCTGTTCATTAGCAGGGGTTAAT 59.046 43.478 0.00 0.00 40.81 1.40
1639 2036 4.532834 TGTTCATTAGCAGGGGTTAATCC 58.467 43.478 0.00 0.00 29.19 3.01
1655 2052 7.555306 GGTTAATCCCTTGCTACTTTCTAAG 57.445 40.000 0.00 0.00 0.00 2.18
1656 2053 7.336396 GGTTAATCCCTTGCTACTTTCTAAGA 58.664 38.462 0.00 0.00 0.00 2.10
1657 2054 7.280428 GGTTAATCCCTTGCTACTTTCTAAGAC 59.720 40.741 0.00 0.00 0.00 3.01
1658 2055 6.628644 AATCCCTTGCTACTTTCTAAGACT 57.371 37.500 0.00 0.00 0.00 3.24
1659 2056 6.628644 ATCCCTTGCTACTTTCTAAGACTT 57.371 37.500 0.00 0.00 0.00 3.01
1660 2057 5.794894 TCCCTTGCTACTTTCTAAGACTTG 58.205 41.667 0.00 0.00 0.00 3.16
1661 2058 5.307196 TCCCTTGCTACTTTCTAAGACTTGT 59.693 40.000 0.00 0.00 0.00 3.16
1662 2059 6.495872 TCCCTTGCTACTTTCTAAGACTTGTA 59.504 38.462 0.00 0.00 0.00 2.41
1663 2060 7.180408 TCCCTTGCTACTTTCTAAGACTTGTAT 59.820 37.037 0.00 0.00 0.00 2.29
1664 2061 7.824779 CCCTTGCTACTTTCTAAGACTTGTATT 59.175 37.037 0.00 0.00 0.00 1.89
1665 2062 8.874816 CCTTGCTACTTTCTAAGACTTGTATTC 58.125 37.037 0.00 0.00 0.00 1.75
1666 2063 9.424319 CTTGCTACTTTCTAAGACTTGTATTCA 57.576 33.333 0.00 0.00 0.00 2.57
1667 2064 8.988064 TGCTACTTTCTAAGACTTGTATTCAG 57.012 34.615 0.00 0.00 0.00 3.02
1668 2065 7.545965 TGCTACTTTCTAAGACTTGTATTCAGC 59.454 37.037 0.00 0.00 0.00 4.26
1669 2066 7.762159 GCTACTTTCTAAGACTTGTATTCAGCT 59.238 37.037 0.00 0.00 0.00 4.24
1670 2067 7.897575 ACTTTCTAAGACTTGTATTCAGCTG 57.102 36.000 7.63 7.63 0.00 4.24
1671 2068 7.445945 ACTTTCTAAGACTTGTATTCAGCTGT 58.554 34.615 14.67 0.00 0.00 4.40
1672 2069 8.585881 ACTTTCTAAGACTTGTATTCAGCTGTA 58.414 33.333 14.67 4.08 0.00 2.74
1673 2070 8.988064 TTTCTAAGACTTGTATTCAGCTGTAG 57.012 34.615 14.67 3.52 0.00 2.74
1674 2071 7.704578 TCTAAGACTTGTATTCAGCTGTAGT 57.295 36.000 14.67 8.55 0.00 2.73
1675 2072 8.123639 TCTAAGACTTGTATTCAGCTGTAGTT 57.876 34.615 14.67 0.00 0.00 2.24
1676 2073 8.029522 TCTAAGACTTGTATTCAGCTGTAGTTG 58.970 37.037 14.67 2.33 0.00 3.16
1677 2074 4.932200 AGACTTGTATTCAGCTGTAGTTGC 59.068 41.667 14.67 1.72 0.00 4.17
1678 2075 4.899502 ACTTGTATTCAGCTGTAGTTGCT 58.100 39.130 14.67 0.00 42.06 3.91
1686 2083 3.037431 AGCTGTAGTTGCTGAGTTCTG 57.963 47.619 0.00 0.00 39.56 3.02
1687 2084 1.462670 GCTGTAGTTGCTGAGTTCTGC 59.537 52.381 4.28 4.28 40.61 4.26
1688 2085 2.869636 GCTGTAGTTGCTGAGTTCTGCT 60.870 50.000 11.46 0.00 40.79 4.24
1689 2086 2.735663 CTGTAGTTGCTGAGTTCTGCTG 59.264 50.000 11.46 0.00 40.79 4.41
1690 2087 2.103094 TGTAGTTGCTGAGTTCTGCTGT 59.897 45.455 11.46 0.81 40.79 4.40
1691 2088 2.338577 AGTTGCTGAGTTCTGCTGTT 57.661 45.000 11.46 0.00 40.79 3.16
1692 2089 2.216898 AGTTGCTGAGTTCTGCTGTTC 58.783 47.619 11.46 1.73 40.79 3.18
1693 2090 2.158842 AGTTGCTGAGTTCTGCTGTTCT 60.159 45.455 11.46 3.51 40.79 3.01
1694 2091 2.160822 TGCTGAGTTCTGCTGTTCTC 57.839 50.000 11.46 9.40 40.79 2.87
1695 2092 1.690893 TGCTGAGTTCTGCTGTTCTCT 59.309 47.619 11.46 1.48 40.79 3.10
1696 2093 2.288702 TGCTGAGTTCTGCTGTTCTCTC 60.289 50.000 11.46 8.57 40.79 3.20
1697 2094 2.930455 GCTGAGTTCTGCTGTTCTCTCC 60.930 54.545 14.37 6.20 37.75 3.71
1698 2095 2.562298 CTGAGTTCTGCTGTTCTCTCCT 59.438 50.000 14.37 0.00 0.00 3.69
1699 2096 2.968574 TGAGTTCTGCTGTTCTCTCCTT 59.031 45.455 14.37 0.00 0.00 3.36
1700 2097 3.389329 TGAGTTCTGCTGTTCTCTCCTTT 59.611 43.478 14.37 0.00 0.00 3.11
1701 2098 4.588951 TGAGTTCTGCTGTTCTCTCCTTTA 59.411 41.667 14.37 0.00 0.00 1.85
1702 2099 5.247110 TGAGTTCTGCTGTTCTCTCCTTTAT 59.753 40.000 14.37 0.00 0.00 1.40
1703 2100 6.437477 TGAGTTCTGCTGTTCTCTCCTTTATA 59.563 38.462 14.37 0.00 0.00 0.98
1704 2101 7.039011 TGAGTTCTGCTGTTCTCTCCTTTATAA 60.039 37.037 14.37 0.00 0.00 0.98
1705 2102 7.856415 AGTTCTGCTGTTCTCTCCTTTATAAT 58.144 34.615 0.00 0.00 0.00 1.28
1706 2103 8.982723 AGTTCTGCTGTTCTCTCCTTTATAATA 58.017 33.333 0.00 0.00 0.00 0.98
1707 2104 9.036671 GTTCTGCTGTTCTCTCCTTTATAATAC 57.963 37.037 0.00 0.00 0.00 1.89
1708 2105 8.540507 TCTGCTGTTCTCTCCTTTATAATACT 57.459 34.615 0.00 0.00 0.00 2.12
1709 2106 8.982723 TCTGCTGTTCTCTCCTTTATAATACTT 58.017 33.333 0.00 0.00 0.00 2.24
1710 2107 9.606631 CTGCTGTTCTCTCCTTTATAATACTTT 57.393 33.333 0.00 0.00 0.00 2.66
1711 2108 9.383519 TGCTGTTCTCTCCTTTATAATACTTTG 57.616 33.333 0.00 0.00 0.00 2.77
1712 2109 8.338986 GCTGTTCTCTCCTTTATAATACTTTGC 58.661 37.037 0.00 0.00 0.00 3.68
1713 2110 9.383519 CTGTTCTCTCCTTTATAATACTTTGCA 57.616 33.333 0.00 0.00 0.00 4.08
1714 2111 9.383519 TGTTCTCTCCTTTATAATACTTTGCAG 57.616 33.333 0.00 0.00 0.00 4.41
1715 2112 9.601217 GTTCTCTCCTTTATAATACTTTGCAGA 57.399 33.333 0.00 0.00 0.00 4.26
1717 2114 9.988815 TCTCTCCTTTATAATACTTTGCAGATC 57.011 33.333 0.00 0.00 0.00 2.75
1718 2115 9.995003 CTCTCCTTTATAATACTTTGCAGATCT 57.005 33.333 0.00 0.00 0.00 2.75
1721 2118 9.905713 TCCTTTATAATACTTTGCAGATCTTGT 57.094 29.630 0.00 0.00 0.00 3.16
1728 2125 8.854614 AATACTTTGCAGATCTTGTAACTCTT 57.145 30.769 0.00 0.00 30.70 2.85
1729 2126 6.551385 ACTTTGCAGATCTTGTAACTCTTG 57.449 37.500 0.00 0.00 30.70 3.02
1730 2127 6.291377 ACTTTGCAGATCTTGTAACTCTTGA 58.709 36.000 0.00 0.00 30.70 3.02
1731 2128 6.939163 ACTTTGCAGATCTTGTAACTCTTGAT 59.061 34.615 0.00 0.00 30.70 2.57
1732 2129 6.732531 TTGCAGATCTTGTAACTCTTGATG 57.267 37.500 0.00 0.00 0.00 3.07
1733 2130 5.798132 TGCAGATCTTGTAACTCTTGATGT 58.202 37.500 0.00 0.00 0.00 3.06
1734 2131 6.935167 TGCAGATCTTGTAACTCTTGATGTA 58.065 36.000 0.00 0.00 0.00 2.29
1735 2132 6.813649 TGCAGATCTTGTAACTCTTGATGTAC 59.186 38.462 0.00 0.00 0.00 2.90
1736 2133 7.038659 GCAGATCTTGTAACTCTTGATGTACT 58.961 38.462 0.00 0.00 0.00 2.73
1737 2134 7.547370 GCAGATCTTGTAACTCTTGATGTACTT 59.453 37.037 0.00 0.00 0.00 2.24
1738 2135 9.429359 CAGATCTTGTAACTCTTGATGTACTTT 57.571 33.333 0.00 0.00 0.00 2.66
1739 2136 9.429359 AGATCTTGTAACTCTTGATGTACTTTG 57.571 33.333 0.00 0.00 0.00 2.77
1740 2137 9.424319 GATCTTGTAACTCTTGATGTACTTTGA 57.576 33.333 0.00 0.00 0.00 2.69
1741 2138 8.589335 TCTTGTAACTCTTGATGTACTTTGAC 57.411 34.615 0.00 0.00 0.00 3.18
1742 2139 8.421784 TCTTGTAACTCTTGATGTACTTTGACT 58.578 33.333 0.00 0.00 0.00 3.41
1743 2140 9.692749 CTTGTAACTCTTGATGTACTTTGACTA 57.307 33.333 0.00 0.00 0.00 2.59
1745 2142 9.639601 TGTAACTCTTGATGTACTTTGACTATG 57.360 33.333 0.00 0.00 0.00 2.23
1746 2143 9.856488 GTAACTCTTGATGTACTTTGACTATGA 57.144 33.333 0.00 0.00 0.00 2.15
1747 2144 8.994429 AACTCTTGATGTACTTTGACTATGAG 57.006 34.615 0.00 0.00 0.00 2.90
1748 2145 7.038659 ACTCTTGATGTACTTTGACTATGAGC 58.961 38.462 0.00 0.00 0.00 4.26
1749 2146 7.093552 ACTCTTGATGTACTTTGACTATGAGCT 60.094 37.037 0.00 0.00 0.00 4.09
1750 2147 7.038048 TCTTGATGTACTTTGACTATGAGCTG 58.962 38.462 0.00 0.00 0.00 4.24
1751 2148 6.530019 TGATGTACTTTGACTATGAGCTGA 57.470 37.500 0.00 0.00 0.00 4.26
1752 2149 6.935167 TGATGTACTTTGACTATGAGCTGAA 58.065 36.000 0.00 0.00 0.00 3.02
1753 2150 7.559486 TGATGTACTTTGACTATGAGCTGAAT 58.441 34.615 0.00 0.00 0.00 2.57
1754 2151 8.695456 TGATGTACTTTGACTATGAGCTGAATA 58.305 33.333 0.00 0.00 0.00 1.75
1755 2152 9.703892 GATGTACTTTGACTATGAGCTGAATAT 57.296 33.333 0.00 0.00 0.00 1.28
1760 2157 9.499479 ACTTTGACTATGAGCTGAATATATTGG 57.501 33.333 1.78 0.00 0.00 3.16
1761 2158 7.912056 TTGACTATGAGCTGAATATATTGGC 57.088 36.000 1.78 7.23 0.00 4.52
1762 2159 7.008021 TGACTATGAGCTGAATATATTGGCA 57.992 36.000 17.08 5.19 0.00 4.92
1763 2160 6.875726 TGACTATGAGCTGAATATATTGGCAC 59.124 38.462 17.08 13.07 0.00 5.01
1764 2161 6.176183 ACTATGAGCTGAATATATTGGCACC 58.824 40.000 17.08 11.18 0.00 5.01
1765 2162 4.712051 TGAGCTGAATATATTGGCACCT 57.288 40.909 17.08 3.37 0.00 4.00
1766 2163 4.392047 TGAGCTGAATATATTGGCACCTG 58.608 43.478 17.08 4.17 0.00 4.00
1767 2164 4.141413 TGAGCTGAATATATTGGCACCTGT 60.141 41.667 17.08 2.40 0.00 4.00
1768 2165 4.796606 AGCTGAATATATTGGCACCTGTT 58.203 39.130 17.08 0.00 0.00 3.16
1769 2166 4.581824 AGCTGAATATATTGGCACCTGTTG 59.418 41.667 17.08 0.00 0.00 3.33
1770 2167 4.261741 GCTGAATATATTGGCACCTGTTGG 60.262 45.833 1.78 0.00 39.83 3.77
1779 2176 2.603008 ACCTGTTGGTGCCTTGCT 59.397 55.556 0.00 0.00 46.51 3.91
1780 2177 1.076044 ACCTGTTGGTGCCTTGCTT 60.076 52.632 0.00 0.00 46.51 3.91
1781 2178 0.687427 ACCTGTTGGTGCCTTGCTTT 60.687 50.000 0.00 0.00 46.51 3.51
1782 2179 0.249573 CCTGTTGGTGCCTTGCTTTG 60.250 55.000 0.00 0.00 0.00 2.77
1783 2180 0.461135 CTGTTGGTGCCTTGCTTTGT 59.539 50.000 0.00 0.00 0.00 2.83
1784 2181 0.901124 TGTTGGTGCCTTGCTTTGTT 59.099 45.000 0.00 0.00 0.00 2.83
1785 2182 1.134848 TGTTGGTGCCTTGCTTTGTTC 60.135 47.619 0.00 0.00 0.00 3.18
1786 2183 1.134848 GTTGGTGCCTTGCTTTGTTCA 60.135 47.619 0.00 0.00 0.00 3.18
1787 2184 1.189752 TGGTGCCTTGCTTTGTTCAA 58.810 45.000 0.00 0.00 0.00 2.69
1788 2185 1.552337 TGGTGCCTTGCTTTGTTCAAA 59.448 42.857 0.00 0.00 0.00 2.69
1789 2186 2.027745 TGGTGCCTTGCTTTGTTCAAAA 60.028 40.909 0.00 0.00 0.00 2.44
1790 2187 3.006247 GGTGCCTTGCTTTGTTCAAAAA 58.994 40.909 0.00 0.00 0.00 1.94
1834 2231 4.905866 CAGAGAATGTTTTGCTACAACACG 59.094 41.667 0.00 0.00 36.97 4.49
1837 2234 3.896648 ATGTTTTGCTACAACACGAGG 57.103 42.857 0.00 0.00 36.97 4.63
1850 2247 5.111989 ACAACACGAGGAGATTGATACATG 58.888 41.667 0.00 0.00 0.00 3.21
1852 2249 4.686972 ACACGAGGAGATTGATACATGTG 58.313 43.478 9.11 0.00 0.00 3.21
1853 2250 4.053983 CACGAGGAGATTGATACATGTGG 58.946 47.826 9.11 0.00 0.00 4.17
1937 2385 6.348786 GCCTATGGCTACATGTTACATTGATG 60.349 42.308 2.30 0.00 46.69 3.07
1939 2387 5.816449 TGGCTACATGTTACATTGATGTG 57.184 39.130 2.30 0.00 41.89 3.21
1942 2393 6.128035 TGGCTACATGTTACATTGATGTGAAC 60.128 38.462 2.30 7.78 41.89 3.18
1956 2407 7.665561 TTGATGTGAACGAAATCAGATGTTA 57.334 32.000 0.00 0.00 33.84 2.41
1957 2408 7.060600 TGATGTGAACGAAATCAGATGTTAC 57.939 36.000 0.00 0.00 33.84 2.50
1960 2411 5.637810 TGTGAACGAAATCAGATGTTACCTC 59.362 40.000 0.00 0.00 0.00 3.85
1963 2414 6.590292 TGAACGAAATCAGATGTTACCTCTTC 59.410 38.462 0.00 0.00 0.00 2.87
1964 2415 6.287589 ACGAAATCAGATGTTACCTCTTCT 57.712 37.500 0.00 0.00 0.00 2.85
1966 2417 7.837863 ACGAAATCAGATGTTACCTCTTCTAA 58.162 34.615 0.00 0.00 0.00 2.10
1967 2418 8.478877 ACGAAATCAGATGTTACCTCTTCTAAT 58.521 33.333 0.00 0.00 0.00 1.73
1968 2419 8.973378 CGAAATCAGATGTTACCTCTTCTAATC 58.027 37.037 0.00 0.00 0.00 1.75
1978 2429 5.251601 ACCTCTTCTAATCTCTGCGTTAC 57.748 43.478 0.00 0.00 0.00 2.50
2073 2524 0.099259 CATGCCATGGTACGCTGTTG 59.901 55.000 14.67 0.00 0.00 3.33
2078 2529 1.518325 CATGGTACGCTGTTGACCAA 58.482 50.000 7.20 0.00 46.03 3.67
2090 2541 1.002033 GTTGACCAACTGAGCTTGCAG 60.002 52.381 5.69 0.99 41.63 4.41
2159 2610 5.772672 ACTAGTGGTTTATGGAATTGTTGCA 59.227 36.000 0.00 0.00 34.77 4.08
2210 2661 2.106511 CCCTCTGTTCCTTTGTCCAAGA 59.893 50.000 0.00 0.00 33.80 3.02
2231 2682 0.327259 ATGAGTGGCAGTGCATCACT 59.673 50.000 22.23 22.23 46.51 3.41
2254 2705 7.229306 CACTCAACAGGTATGCATGGTATAATT 59.771 37.037 10.16 0.00 0.00 1.40
2301 2752 6.145534 TCGTTGATCAGTAAGTGACAAATGAC 59.854 38.462 0.00 0.00 38.28 3.06
2364 2815 3.127721 TCGTGCAATTTTGTGTGAAGACA 59.872 39.130 0.00 0.00 0.00 3.41
2421 2872 4.097741 GCAGAGCAGAGTCTGAAGATAGAA 59.902 45.833 24.55 0.00 46.02 2.10
2422 2873 5.581605 CAGAGCAGAGTCTGAAGATAGAAC 58.418 45.833 24.55 2.47 46.02 3.01
2464 2915 0.030235 CATGATGCGAATGCTGGTGG 59.970 55.000 0.00 0.00 43.34 4.61
2486 2937 3.683340 GTCGGTTTTCTACCCTGAATGTC 59.317 47.826 0.00 0.00 44.70 3.06
2686 3137 5.013861 CAAATTGTGTTGCTTGATTCAGC 57.986 39.130 0.00 2.36 40.55 4.26
2774 3225 8.465201 GCTGAATTAAGAGGAGAATTGATTGTT 58.535 33.333 0.00 0.00 0.00 2.83
2792 3243 3.857052 TGTTTGTATCAAGGCCTACTCG 58.143 45.455 5.16 0.00 0.00 4.18
2793 3244 3.259876 TGTTTGTATCAAGGCCTACTCGT 59.740 43.478 5.16 0.00 0.00 4.18
2846 3297 5.606348 TTACACCCAAGAAGTGCAATTTT 57.394 34.783 0.00 0.00 38.87 1.82
2873 3324 2.843113 AGAGAGAATTGTCCTTGGGGAG 59.157 50.000 0.00 0.00 43.12 4.30
2992 3443 2.757868 CTCTACACCCCTCTCTGTTGAG 59.242 54.545 0.00 0.00 41.51 3.02
3031 3540 9.668497 GTCTGTTTATTAGTCTTTGGTAGGATT 57.332 33.333 0.00 0.00 0.00 3.01
3057 3566 9.555727 TTGTATTATGTTATCTAAACCTCTGGC 57.444 33.333 0.00 0.00 0.00 4.85
3070 3586 1.952296 CCTCTGGCCTATGTTGCATTC 59.048 52.381 3.32 0.00 0.00 2.67
3072 3588 3.181451 CCTCTGGCCTATGTTGCATTCTA 60.181 47.826 3.32 0.00 0.00 2.10
3120 3636 4.101114 TCTGGAGACAAATAACTGGCCTA 58.899 43.478 3.32 0.00 42.06 3.93
3135 3651 1.484356 GCCTACTTATGCACGTACGG 58.516 55.000 21.06 9.73 0.00 4.02
3175 3691 6.872920 TGCTTTATTGTTTCTTGGAGTTGTT 58.127 32.000 0.00 0.00 0.00 2.83
3178 3694 7.532682 TTTATTGTTTCTTGGAGTTGTTTGC 57.467 32.000 0.00 0.00 0.00 3.68
3219 3735 4.337274 TGATGTTGCTAGAATTGATGCTGG 59.663 41.667 0.00 0.00 0.00 4.85
3226 3742 4.036144 GCTAGAATTGATGCTGGTTTCTCC 59.964 45.833 0.00 0.00 0.00 3.71
3238 3754 0.804989 GTTTCTCCCTGCGATTGTGG 59.195 55.000 0.00 0.00 0.00 4.17
3240 3756 0.400213 TTCTCCCTGCGATTGTGGTT 59.600 50.000 0.00 0.00 0.00 3.67
3250 3766 3.243035 TGCGATTGTGGTTCAGTTGAAAG 60.243 43.478 0.00 0.00 35.58 2.62
3283 3799 7.760340 CACAAGACCCTTGTTATTCTACTCTAC 59.240 40.741 9.39 0.00 0.00 2.59
3284 3800 7.674772 ACAAGACCCTTGTTATTCTACTCTACT 59.325 37.037 6.53 0.00 0.00 2.57
3285 3801 7.648039 AGACCCTTGTTATTCTACTCTACTG 57.352 40.000 0.00 0.00 0.00 2.74
3286 3802 7.183460 AGACCCTTGTTATTCTACTCTACTGT 58.817 38.462 0.00 0.00 0.00 3.55
3287 3803 7.339976 AGACCCTTGTTATTCTACTCTACTGTC 59.660 40.741 0.00 0.00 0.00 3.51
3288 3804 6.952358 ACCCTTGTTATTCTACTCTACTGTCA 59.048 38.462 0.00 0.00 0.00 3.58
3289 3805 7.620094 ACCCTTGTTATTCTACTCTACTGTCAT 59.380 37.037 0.00 0.00 0.00 3.06
3290 3806 8.478877 CCCTTGTTATTCTACTCTACTGTCATT 58.521 37.037 0.00 0.00 0.00 2.57
3291 3807 9.877178 CCTTGTTATTCTACTCTACTGTCATTT 57.123 33.333 0.00 0.00 0.00 2.32
3369 4256 2.592897 GTCATGCTACACACGTAGTTCG 59.407 50.000 0.00 0.00 45.92 3.95
3371 4258 0.387622 TGCTACACACGTAGTTCGGC 60.388 55.000 0.00 0.00 45.92 5.54
3395 4282 5.637810 CCGTGTCATACAAATTGTCTAGTGT 59.362 40.000 0.22 0.00 0.00 3.55
3398 4285 8.160342 CGTGTCATACAAATTGTCTAGTGTTAC 58.840 37.037 0.22 2.32 0.00 2.50
3422 4309 2.167693 CAGTCATCTAAACGGGCCACTA 59.832 50.000 4.39 0.00 0.00 2.74
3423 4310 2.835764 AGTCATCTAAACGGGCCACTAA 59.164 45.455 4.39 0.00 0.00 2.24
3433 4320 3.227614 ACGGGCCACTAAACTTCAAATT 58.772 40.909 4.39 0.00 0.00 1.82
3435 4322 4.457949 ACGGGCCACTAAACTTCAAATTAG 59.542 41.667 4.39 0.00 35.67 1.73
3439 4326 6.405842 GGGCCACTAAACTTCAAATTAGGATG 60.406 42.308 4.39 0.00 34.21 3.51
3441 4328 7.251281 GCCACTAAACTTCAAATTAGGATGAC 58.749 38.462 0.00 0.00 34.21 3.06
3442 4329 7.121315 GCCACTAAACTTCAAATTAGGATGACT 59.879 37.037 0.00 0.00 34.21 3.41
3447 4334 4.706962 ACTTCAAATTAGGATGACTTGGGC 59.293 41.667 1.47 0.00 0.00 5.36
3472 4359 1.214589 CATGGCTTGCTGCAAGGTC 59.785 57.895 35.43 23.09 45.15 3.85
3477 4364 4.659172 TTGCTGCAAGGTCCCGGG 62.659 66.667 16.85 16.85 0.00 5.73
3515 4402 2.345991 GTCGCTGGTGCTGGGTTA 59.654 61.111 0.00 0.00 36.97 2.85
3516 4403 1.741770 GTCGCTGGTGCTGGGTTAG 60.742 63.158 0.00 0.00 36.97 2.34
3882 7019 0.034574 TAGGGCATCGGTGTTGCAAT 60.035 50.000 0.59 0.00 41.95 3.56
3883 7020 0.899717 AGGGCATCGGTGTTGCAATT 60.900 50.000 0.59 0.00 41.95 2.32
3884 7021 0.814457 GGGCATCGGTGTTGCAATTA 59.186 50.000 0.59 0.00 41.95 1.40
3885 7022 1.203523 GGGCATCGGTGTTGCAATTAA 59.796 47.619 0.59 0.00 41.95 1.40
3886 7023 2.529151 GGCATCGGTGTTGCAATTAAG 58.471 47.619 0.59 0.00 41.95 1.85
3887 7024 2.094752 GGCATCGGTGTTGCAATTAAGT 60.095 45.455 0.59 0.00 41.95 2.24
3897 7034 1.882989 GCAATTAAGTTGGGCGGCCA 61.883 55.000 29.27 29.27 38.29 5.36
3922 7059 0.942410 CACTGCCAATGCTGCAACAC 60.942 55.000 6.36 0.00 39.83 3.32
3952 7089 1.569479 GCAAGAGGTGGAGTTGCGAC 61.569 60.000 0.00 0.00 37.44 5.19
3953 7090 0.249868 CAAGAGGTGGAGTTGCGACA 60.250 55.000 6.90 0.00 0.00 4.35
3956 7093 0.249911 GAGGTGGAGTTGCGACAAGT 60.250 55.000 6.90 0.00 0.00 3.16
3969 7106 1.826487 ACAAGTCGTTGTTGGCCCC 60.826 57.895 0.00 0.00 45.00 5.80
3970 7107 1.826054 CAAGTCGTTGTTGGCCCCA 60.826 57.895 0.00 0.00 0.00 4.96
3973 7110 2.203280 TCGTTGTTGGCCCCAGTG 60.203 61.111 0.00 0.00 0.00 3.66
3976 7113 1.454847 GTTGTTGGCCCCAGTGACA 60.455 57.895 0.00 0.00 0.00 3.58
3992 7129 1.078759 GACACAAGCCGAGATGACCG 61.079 60.000 0.00 0.00 0.00 4.79
3996 7133 1.741770 AAGCCGAGATGACCGCAAC 60.742 57.895 0.00 0.00 0.00 4.17
4000 7137 1.431488 CCGAGATGACCGCAACATGG 61.431 60.000 0.00 0.00 0.00 3.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 4.562757 GCAATCCCATAGCCGTTGTATCTA 60.563 45.833 0.00 0.00 0.00 1.98
14 15 0.546122 TGAGCAATCCCATAGCCGTT 59.454 50.000 0.00 0.00 0.00 4.44
15 16 0.107456 CTGAGCAATCCCATAGCCGT 59.893 55.000 0.00 0.00 0.00 5.68
91 92 1.153823 CGAGGAAACGACATCCGCT 60.154 57.895 0.00 0.00 42.03 5.52
109 110 1.949257 CCTTGACAACGCCTCCAAC 59.051 57.895 0.00 0.00 0.00 3.77
152 153 1.847088 GGACCTAAGCTTTCCCCTGAT 59.153 52.381 3.20 0.00 0.00 2.90
163 164 1.521141 GGAGGAACCGGACCTAAGC 59.479 63.158 20.81 11.31 37.93 3.09
219 231 1.589993 GCGAGCGAGCAAGATAGCA 60.590 57.895 0.00 0.00 36.85 3.49
258 460 0.890542 AAGAGCAGCAAATGTCGCCA 60.891 50.000 0.00 0.00 0.00 5.69
264 466 2.803956 CCCAAACAAAGAGCAGCAAATG 59.196 45.455 0.00 0.00 0.00 2.32
265 467 2.435437 ACCCAAACAAAGAGCAGCAAAT 59.565 40.909 0.00 0.00 0.00 2.32
300 524 3.182967 CCGAAGAGAAGATACAGCACAC 58.817 50.000 0.00 0.00 0.00 3.82
305 529 2.690497 TCAGCCCGAAGAGAAGATACAG 59.310 50.000 0.00 0.00 0.00 2.74
350 574 4.617875 GGCGTGAACATAGTGCCT 57.382 55.556 0.00 0.00 42.44 4.75
356 580 1.814394 ACGTAGACAGGCGTGAACATA 59.186 47.619 14.38 0.00 40.03 2.29
373 597 1.803334 ACAATACATGGCACGAACGT 58.197 45.000 0.00 0.00 0.00 3.99
510 734 2.440796 ATTGGCCCGGTGATGCAG 60.441 61.111 0.00 0.00 0.00 4.41
536 817 0.108019 AACCAACTCCAGAACCGACC 59.892 55.000 0.00 0.00 0.00 4.79
576 857 0.976073 ATTCTTCCTTCCCCGCGAGA 60.976 55.000 8.23 0.00 0.00 4.04
596 877 5.435291 CACAATCCTTTGCCTAATCTCTCT 58.565 41.667 0.00 0.00 36.22 3.10
597 878 4.578105 CCACAATCCTTTGCCTAATCTCTC 59.422 45.833 0.00 0.00 36.22 3.20
598 879 4.228210 TCCACAATCCTTTGCCTAATCTCT 59.772 41.667 0.00 0.00 36.22 3.10
665 946 1.144969 TTCCATCGAAAGACACGTGC 58.855 50.000 17.22 8.74 46.97 5.34
693 974 3.381908 CCTGGACTCACGCTAACTATCTT 59.618 47.826 0.00 0.00 0.00 2.40
698 979 0.889306 GACCTGGACTCACGCTAACT 59.111 55.000 0.00 0.00 0.00 2.24
734 1015 1.340211 ACACACACACGGGAAAAAGGA 60.340 47.619 0.00 0.00 0.00 3.36
735 1016 1.099689 ACACACACACGGGAAAAAGG 58.900 50.000 0.00 0.00 0.00 3.11
736 1017 1.797348 GCACACACACACGGGAAAAAG 60.797 52.381 0.00 0.00 0.00 2.27
737 1018 0.171455 GCACACACACACGGGAAAAA 59.829 50.000 0.00 0.00 0.00 1.94
738 1019 1.803943 GCACACACACACGGGAAAA 59.196 52.632 0.00 0.00 0.00 2.29
739 1020 2.465299 CGCACACACACACGGGAAA 61.465 57.895 0.00 0.00 0.00 3.13
740 1021 2.294132 TACGCACACACACACGGGAA 62.294 55.000 0.00 0.00 0.00 3.97
741 1022 2.089887 ATACGCACACACACACGGGA 62.090 55.000 0.00 0.00 0.00 5.14
742 1023 1.623081 GATACGCACACACACACGGG 61.623 60.000 0.00 0.00 0.00 5.28
885 1177 2.225019 GCAGGTGGATTGATTAGCGATG 59.775 50.000 0.00 0.00 0.00 3.84
917 1209 1.072173 TGCAAGCTAGCCTCAACAAGA 59.928 47.619 12.13 0.00 0.00 3.02
1033 1345 1.135094 ATCCCATACACCTGCTCCTG 58.865 55.000 0.00 0.00 0.00 3.86
1034 1346 1.135094 CATCCCATACACCTGCTCCT 58.865 55.000 0.00 0.00 0.00 3.69
1035 1347 0.536006 GCATCCCATACACCTGCTCC 60.536 60.000 0.00 0.00 0.00 4.70
1036 1348 0.536006 GGCATCCCATACACCTGCTC 60.536 60.000 0.00 0.00 33.43 4.26
1037 1349 1.533711 GGCATCCCATACACCTGCT 59.466 57.895 0.00 0.00 33.43 4.24
1038 1350 1.529244 GGGCATCCCATACACCTGC 60.529 63.158 0.00 0.00 44.65 4.85
1058 1370 2.869801 TGCGACTCGTCAAGTGATTTTT 59.130 40.909 0.00 0.00 38.74 1.94
1105 1417 3.350833 AGGAAGATCGCAGCAATTTCTT 58.649 40.909 0.00 0.00 0.00 2.52
1185 1497 3.461831 AGATAGACTGTAGCTGGGAGAGT 59.538 47.826 0.00 0.00 0.00 3.24
1223 1535 2.722201 GGGTTCGACCTGCGGAGAT 61.722 63.158 5.10 0.00 38.64 2.75
1281 1593 2.799562 CGCGGAGTCTGATTCATGCTTA 60.800 50.000 2.16 0.00 0.00 3.09
1402 1717 5.435948 CTACACAAGTAGTAACACATGCG 57.564 43.478 0.00 0.00 42.25 4.73
1426 1823 2.434336 AGTTGAGTGCAGAGTTGGTACA 59.566 45.455 0.00 0.00 0.00 2.90
1500 1897 9.529325 CATTGTGCTACTACTTATAAGCAACTA 57.471 33.333 12.54 0.00 45.81 2.24
1501 1898 8.041323 ACATTGTGCTACTACTTATAAGCAACT 58.959 33.333 12.54 0.00 45.81 3.16
1502 1899 8.116753 CACATTGTGCTACTACTTATAAGCAAC 58.883 37.037 12.54 2.03 45.81 4.17
1503 1900 7.822334 ACACATTGTGCTACTACTTATAAGCAA 59.178 33.333 16.62 6.41 45.81 3.91
1504 1901 7.327975 ACACATTGTGCTACTACTTATAAGCA 58.672 34.615 16.62 1.28 42.41 3.91
1505 1902 7.772332 ACACATTGTGCTACTACTTATAAGC 57.228 36.000 16.62 0.00 36.98 3.09
1506 1903 8.969267 GCTACACATTGTGCTACTACTTATAAG 58.031 37.037 16.62 11.05 36.98 1.73
1507 1904 8.471609 TGCTACACATTGTGCTACTACTTATAA 58.528 33.333 16.62 0.00 36.98 0.98
1508 1905 7.919091 GTGCTACACATTGTGCTACTACTTATA 59.081 37.037 16.62 0.00 36.98 0.98
1509 1906 6.757010 GTGCTACACATTGTGCTACTACTTAT 59.243 38.462 16.62 0.00 36.98 1.73
1510 1907 6.071560 AGTGCTACACATTGTGCTACTACTTA 60.072 38.462 16.62 0.00 36.98 2.24
1511 1908 4.929808 GTGCTACACATTGTGCTACTACTT 59.070 41.667 16.62 0.00 36.98 2.24
1512 1909 4.220821 AGTGCTACACATTGTGCTACTACT 59.779 41.667 16.62 11.42 36.98 2.57
1513 1910 4.495422 AGTGCTACACATTGTGCTACTAC 58.505 43.478 16.62 9.54 36.98 2.73
1514 1911 4.801330 AGTGCTACACATTGTGCTACTA 57.199 40.909 16.62 1.09 36.98 1.82
1515 1912 3.685139 AGTGCTACACATTGTGCTACT 57.315 42.857 16.62 12.04 36.98 2.57
1516 1913 4.466828 CAAAGTGCTACACATTGTGCTAC 58.533 43.478 16.62 10.17 37.98 3.58
1517 1914 3.501828 CCAAAGTGCTACACATTGTGCTA 59.498 43.478 16.62 7.61 40.14 3.49
1518 1915 2.294233 CCAAAGTGCTACACATTGTGCT 59.706 45.455 16.62 6.87 40.14 4.40
1519 1916 2.607771 CCCAAAGTGCTACACATTGTGC 60.608 50.000 16.62 3.73 40.14 4.57
1532 1929 2.749621 GTGATACTGAAGCCCCAAAGTG 59.250 50.000 0.00 0.00 0.00 3.16
1533 1930 2.375174 TGTGATACTGAAGCCCCAAAGT 59.625 45.455 0.00 0.00 0.00 2.66
1534 1931 2.749621 GTGTGATACTGAAGCCCCAAAG 59.250 50.000 0.00 0.00 0.00 2.77
1538 1935 2.084546 GTTGTGTGATACTGAAGCCCC 58.915 52.381 0.00 0.00 0.00 5.80
1541 1938 5.438761 AAAAGGTTGTGTGATACTGAAGC 57.561 39.130 0.00 0.00 0.00 3.86
1547 1944 5.977129 CACAAGGAAAAAGGTTGTGTGATAC 59.023 40.000 6.32 0.00 43.94 2.24
1556 1953 3.976015 TCTCACCACAAGGAAAAAGGTT 58.024 40.909 0.00 0.00 38.69 3.50
1569 1966 3.149196 TGGAAAGCAAGATTCTCACCAC 58.851 45.455 0.00 0.00 0.00 4.16
1570 1967 3.072915 TCTGGAAAGCAAGATTCTCACCA 59.927 43.478 0.00 0.00 0.00 4.17
1571 1968 3.679389 TCTGGAAAGCAAGATTCTCACC 58.321 45.455 0.00 0.00 0.00 4.02
1576 1973 6.597280 AGAAGTACATCTGGAAAGCAAGATTC 59.403 38.462 0.00 0.00 30.62 2.52
1577 1974 6.479884 AGAAGTACATCTGGAAAGCAAGATT 58.520 36.000 0.00 0.00 30.62 2.40
1580 1977 4.633565 GGAGAAGTACATCTGGAAAGCAAG 59.366 45.833 5.13 0.00 0.00 4.01
1581 1978 4.287067 AGGAGAAGTACATCTGGAAAGCAA 59.713 41.667 5.13 0.00 0.00 3.91
1582 1979 3.840666 AGGAGAAGTACATCTGGAAAGCA 59.159 43.478 5.13 0.00 0.00 3.91
1583 1980 4.479786 AGGAGAAGTACATCTGGAAAGC 57.520 45.455 5.13 0.00 0.00 3.51
1584 1981 9.757227 CTAATAAGGAGAAGTACATCTGGAAAG 57.243 37.037 5.13 0.00 0.00 2.62
1585 1982 9.268282 ACTAATAAGGAGAAGTACATCTGGAAA 57.732 33.333 5.13 0.00 0.00 3.13
1586 1983 8.840200 ACTAATAAGGAGAAGTACATCTGGAA 57.160 34.615 5.13 0.00 0.00 3.53
1587 1984 8.282982 AGACTAATAAGGAGAAGTACATCTGGA 58.717 37.037 5.13 0.00 0.00 3.86
1588 1985 8.472007 AGACTAATAAGGAGAAGTACATCTGG 57.528 38.462 5.13 0.00 0.00 3.86
1589 1986 9.743057 CAAGACTAATAAGGAGAAGTACATCTG 57.257 37.037 5.13 0.00 0.00 2.90
1590 1987 8.417884 GCAAGACTAATAAGGAGAAGTACATCT 58.582 37.037 0.00 0.00 0.00 2.90
1593 1990 7.178628 ACAGCAAGACTAATAAGGAGAAGTACA 59.821 37.037 0.00 0.00 0.00 2.90
1594 1991 7.548967 ACAGCAAGACTAATAAGGAGAAGTAC 58.451 38.462 0.00 0.00 0.00 2.73
1596 1993 6.613153 ACAGCAAGACTAATAAGGAGAAGT 57.387 37.500 0.00 0.00 0.00 3.01
1597 1994 7.099764 TGAACAGCAAGACTAATAAGGAGAAG 58.900 38.462 0.00 0.00 0.00 2.85
1600 1997 7.856145 AATGAACAGCAAGACTAATAAGGAG 57.144 36.000 0.00 0.00 0.00 3.69
1602 1999 7.280876 TGCTAATGAACAGCAAGACTAATAAGG 59.719 37.037 0.00 0.00 45.71 2.69
1603 2000 8.201554 TGCTAATGAACAGCAAGACTAATAAG 57.798 34.615 0.00 0.00 45.71 1.73
1615 2012 1.839424 AACCCCTGCTAATGAACAGC 58.161 50.000 0.00 0.00 39.56 4.40
1616 2013 4.580580 GGATTAACCCCTGCTAATGAACAG 59.419 45.833 0.00 0.00 0.00 3.16
1617 2014 4.532834 GGATTAACCCCTGCTAATGAACA 58.467 43.478 0.00 0.00 0.00 3.18
1631 2028 7.280428 GTCTTAGAAAGTAGCAAGGGATTAACC 59.720 40.741 0.00 0.00 38.08 2.85
1632 2029 8.041919 AGTCTTAGAAAGTAGCAAGGGATTAAC 58.958 37.037 0.00 0.00 0.00 2.01
1635 2032 6.628644 AGTCTTAGAAAGTAGCAAGGGATT 57.371 37.500 0.00 0.00 0.00 3.01
1637 2034 5.307196 ACAAGTCTTAGAAAGTAGCAAGGGA 59.693 40.000 0.00 0.00 0.00 4.20
1639 2036 8.779354 AATACAAGTCTTAGAAAGTAGCAAGG 57.221 34.615 0.00 0.00 0.00 3.61
1640 2037 9.424319 TGAATACAAGTCTTAGAAAGTAGCAAG 57.576 33.333 0.00 0.00 0.00 4.01
1641 2038 9.424319 CTGAATACAAGTCTTAGAAAGTAGCAA 57.576 33.333 0.00 0.00 0.00 3.91
1642 2039 7.545965 GCTGAATACAAGTCTTAGAAAGTAGCA 59.454 37.037 0.00 0.00 0.00 3.49
1643 2040 7.762159 AGCTGAATACAAGTCTTAGAAAGTAGC 59.238 37.037 0.00 0.00 0.00 3.58
1644 2041 9.081997 CAGCTGAATACAAGTCTTAGAAAGTAG 57.918 37.037 8.42 0.00 0.00 2.57
1645 2042 8.585881 ACAGCTGAATACAAGTCTTAGAAAGTA 58.414 33.333 23.35 0.00 0.00 2.24
1646 2043 7.445945 ACAGCTGAATACAAGTCTTAGAAAGT 58.554 34.615 23.35 0.00 0.00 2.66
1647 2044 7.897575 ACAGCTGAATACAAGTCTTAGAAAG 57.102 36.000 23.35 0.00 0.00 2.62
1648 2045 8.585881 ACTACAGCTGAATACAAGTCTTAGAAA 58.414 33.333 23.35 0.00 0.00 2.52
1649 2046 8.123639 ACTACAGCTGAATACAAGTCTTAGAA 57.876 34.615 23.35 0.00 0.00 2.10
1650 2047 7.704578 ACTACAGCTGAATACAAGTCTTAGA 57.295 36.000 23.35 0.00 0.00 2.10
1651 2048 7.201478 GCAACTACAGCTGAATACAAGTCTTAG 60.201 40.741 23.35 9.26 0.00 2.18
1652 2049 6.590292 GCAACTACAGCTGAATACAAGTCTTA 59.410 38.462 23.35 0.00 0.00 2.10
1653 2050 5.409826 GCAACTACAGCTGAATACAAGTCTT 59.590 40.000 23.35 0.00 0.00 3.01
1654 2051 4.932200 GCAACTACAGCTGAATACAAGTCT 59.068 41.667 23.35 0.00 0.00 3.24
1655 2052 4.932200 AGCAACTACAGCTGAATACAAGTC 59.068 41.667 23.35 0.80 41.61 3.01
1656 2053 4.899502 AGCAACTACAGCTGAATACAAGT 58.100 39.130 23.35 10.30 41.61 3.16
1666 2063 2.869636 GCAGAACTCAGCAACTACAGCT 60.870 50.000 0.00 0.00 44.62 4.24
1667 2064 1.462670 GCAGAACTCAGCAACTACAGC 59.537 52.381 0.00 0.00 0.00 4.40
1668 2065 2.735663 CAGCAGAACTCAGCAACTACAG 59.264 50.000 0.00 0.00 0.00 2.74
1669 2066 2.103094 ACAGCAGAACTCAGCAACTACA 59.897 45.455 0.00 0.00 0.00 2.74
1670 2067 2.760374 ACAGCAGAACTCAGCAACTAC 58.240 47.619 0.00 0.00 0.00 2.73
1671 2068 3.070159 AGAACAGCAGAACTCAGCAACTA 59.930 43.478 0.00 0.00 0.00 2.24
1672 2069 2.158842 AGAACAGCAGAACTCAGCAACT 60.159 45.455 0.00 0.00 0.00 3.16
1673 2070 2.216898 AGAACAGCAGAACTCAGCAAC 58.783 47.619 0.00 0.00 0.00 4.17
1674 2071 2.103771 AGAGAACAGCAGAACTCAGCAA 59.896 45.455 0.00 0.00 32.59 3.91
1675 2072 1.690893 AGAGAACAGCAGAACTCAGCA 59.309 47.619 0.00 0.00 32.59 4.41
1676 2073 2.336667 GAGAGAACAGCAGAACTCAGC 58.663 52.381 0.00 0.00 32.59 4.26
1677 2074 2.562298 AGGAGAGAACAGCAGAACTCAG 59.438 50.000 0.00 0.00 32.59 3.35
1678 2075 2.603021 AGGAGAGAACAGCAGAACTCA 58.397 47.619 0.00 0.00 32.59 3.41
1679 2076 3.676291 AAGGAGAGAACAGCAGAACTC 57.324 47.619 0.00 0.00 0.00 3.01
1680 2077 5.753721 ATAAAGGAGAGAACAGCAGAACT 57.246 39.130 0.00 0.00 0.00 3.01
1681 2078 9.036671 GTATTATAAAGGAGAGAACAGCAGAAC 57.963 37.037 0.00 0.00 0.00 3.01
1682 2079 8.982723 AGTATTATAAAGGAGAGAACAGCAGAA 58.017 33.333 0.00 0.00 0.00 3.02
1683 2080 8.540507 AGTATTATAAAGGAGAGAACAGCAGA 57.459 34.615 0.00 0.00 0.00 4.26
1684 2081 9.606631 AAAGTATTATAAAGGAGAGAACAGCAG 57.393 33.333 0.00 0.00 0.00 4.24
1685 2082 9.383519 CAAAGTATTATAAAGGAGAGAACAGCA 57.616 33.333 0.00 0.00 0.00 4.41
1686 2083 8.338986 GCAAAGTATTATAAAGGAGAGAACAGC 58.661 37.037 0.00 0.00 0.00 4.40
1687 2084 9.383519 TGCAAAGTATTATAAAGGAGAGAACAG 57.616 33.333 0.00 0.00 0.00 3.16
1688 2085 9.383519 CTGCAAAGTATTATAAAGGAGAGAACA 57.616 33.333 0.00 0.00 0.00 3.18
1689 2086 9.601217 TCTGCAAAGTATTATAAAGGAGAGAAC 57.399 33.333 0.00 0.00 0.00 3.01
1691 2088 9.988815 GATCTGCAAAGTATTATAAAGGAGAGA 57.011 33.333 0.00 0.00 0.00 3.10
1692 2089 9.995003 AGATCTGCAAAGTATTATAAAGGAGAG 57.005 33.333 0.00 0.00 0.00 3.20
1695 2092 9.905713 ACAAGATCTGCAAAGTATTATAAAGGA 57.094 29.630 0.00 0.00 0.00 3.36
1702 2099 9.944376 AAGAGTTACAAGATCTGCAAAGTATTA 57.056 29.630 0.00 0.00 0.00 0.98
1703 2100 8.725148 CAAGAGTTACAAGATCTGCAAAGTATT 58.275 33.333 0.00 0.00 0.00 1.89
1704 2101 8.097038 TCAAGAGTTACAAGATCTGCAAAGTAT 58.903 33.333 0.00 0.00 0.00 2.12
1705 2102 7.441836 TCAAGAGTTACAAGATCTGCAAAGTA 58.558 34.615 0.00 0.00 0.00 2.24
1706 2103 6.291377 TCAAGAGTTACAAGATCTGCAAAGT 58.709 36.000 0.00 0.00 0.00 2.66
1707 2104 6.791887 TCAAGAGTTACAAGATCTGCAAAG 57.208 37.500 0.00 0.00 0.00 2.77
1708 2105 6.712095 ACATCAAGAGTTACAAGATCTGCAAA 59.288 34.615 0.00 0.00 0.00 3.68
1709 2106 6.233434 ACATCAAGAGTTACAAGATCTGCAA 58.767 36.000 0.00 0.00 0.00 4.08
1710 2107 5.798132 ACATCAAGAGTTACAAGATCTGCA 58.202 37.500 0.00 0.00 0.00 4.41
1711 2108 7.038659 AGTACATCAAGAGTTACAAGATCTGC 58.961 38.462 0.00 0.00 0.00 4.26
1712 2109 8.994429 AAGTACATCAAGAGTTACAAGATCTG 57.006 34.615 0.00 0.00 0.00 2.90
1713 2110 9.429359 CAAAGTACATCAAGAGTTACAAGATCT 57.571 33.333 0.00 0.00 0.00 2.75
1714 2111 9.424319 TCAAAGTACATCAAGAGTTACAAGATC 57.576 33.333 0.00 0.00 0.00 2.75
1715 2112 9.209175 GTCAAAGTACATCAAGAGTTACAAGAT 57.791 33.333 0.00 0.00 0.00 2.40
1716 2113 8.421784 AGTCAAAGTACATCAAGAGTTACAAGA 58.578 33.333 0.00 0.00 0.00 3.02
1717 2114 8.594881 AGTCAAAGTACATCAAGAGTTACAAG 57.405 34.615 0.00 0.00 0.00 3.16
1719 2116 9.639601 CATAGTCAAAGTACATCAAGAGTTACA 57.360 33.333 0.00 0.00 0.00 2.41
1720 2117 9.856488 TCATAGTCAAAGTACATCAAGAGTTAC 57.144 33.333 0.00 0.00 0.00 2.50
1722 2119 7.547370 GCTCATAGTCAAAGTACATCAAGAGTT 59.453 37.037 0.00 0.00 0.00 3.01
1723 2120 7.038659 GCTCATAGTCAAAGTACATCAAGAGT 58.961 38.462 0.00 0.00 0.00 3.24
1724 2121 7.222417 CAGCTCATAGTCAAAGTACATCAAGAG 59.778 40.741 0.00 0.00 0.00 2.85
1725 2122 7.038048 CAGCTCATAGTCAAAGTACATCAAGA 58.962 38.462 0.00 0.00 0.00 3.02
1726 2123 7.038048 TCAGCTCATAGTCAAAGTACATCAAG 58.962 38.462 0.00 0.00 0.00 3.02
1727 2124 6.935167 TCAGCTCATAGTCAAAGTACATCAA 58.065 36.000 0.00 0.00 0.00 2.57
1728 2125 6.530019 TCAGCTCATAGTCAAAGTACATCA 57.470 37.500 0.00 0.00 0.00 3.07
1729 2126 9.703892 ATATTCAGCTCATAGTCAAAGTACATC 57.296 33.333 0.00 0.00 0.00 3.06
1734 2131 9.499479 CCAATATATTCAGCTCATAGTCAAAGT 57.501 33.333 0.00 0.00 0.00 2.66
1735 2132 8.449397 GCCAATATATTCAGCTCATAGTCAAAG 58.551 37.037 8.97 0.00 0.00 2.77
1736 2133 7.938490 TGCCAATATATTCAGCTCATAGTCAAA 59.062 33.333 14.88 0.00 0.00 2.69
1737 2134 7.388776 GTGCCAATATATTCAGCTCATAGTCAA 59.611 37.037 14.88 0.00 0.00 3.18
1738 2135 6.875726 GTGCCAATATATTCAGCTCATAGTCA 59.124 38.462 14.88 0.00 0.00 3.41
1739 2136 6.314896 GGTGCCAATATATTCAGCTCATAGTC 59.685 42.308 14.88 0.46 0.00 2.59
1740 2137 6.013032 AGGTGCCAATATATTCAGCTCATAGT 60.013 38.462 14.88 0.00 32.55 2.12
1741 2138 6.315642 CAGGTGCCAATATATTCAGCTCATAG 59.684 42.308 13.21 3.05 35.40 2.23
1742 2139 6.175471 CAGGTGCCAATATATTCAGCTCATA 58.825 40.000 13.21 0.00 35.40 2.15
1743 2140 5.008331 CAGGTGCCAATATATTCAGCTCAT 58.992 41.667 13.21 7.71 35.40 2.90
1744 2141 4.141413 ACAGGTGCCAATATATTCAGCTCA 60.141 41.667 13.21 0.00 35.40 4.26
1745 2142 4.392940 ACAGGTGCCAATATATTCAGCTC 58.607 43.478 13.21 11.14 35.40 4.09
1746 2143 4.443978 ACAGGTGCCAATATATTCAGCT 57.556 40.909 14.88 13.08 37.72 4.24
1747 2144 4.261741 CCAACAGGTGCCAATATATTCAGC 60.262 45.833 9.22 9.22 0.00 4.26
1748 2145 4.889409 ACCAACAGGTGCCAATATATTCAG 59.111 41.667 0.00 0.00 33.38 3.02
1749 2146 4.644234 CACCAACAGGTGCCAATATATTCA 59.356 41.667 1.21 0.00 45.68 2.57
1750 2147 5.186996 CACCAACAGGTGCCAATATATTC 57.813 43.478 1.21 0.00 45.68 1.75
1762 2159 0.687427 AAAGCAAGGCACCAACAGGT 60.687 50.000 0.00 0.00 35.55 4.00
1763 2160 0.249573 CAAAGCAAGGCACCAACAGG 60.250 55.000 0.00 0.00 0.00 4.00
1764 2161 0.461135 ACAAAGCAAGGCACCAACAG 59.539 50.000 0.00 0.00 0.00 3.16
1765 2162 0.901124 AACAAAGCAAGGCACCAACA 59.099 45.000 0.00 0.00 0.00 3.33
1766 2163 1.134848 TGAACAAAGCAAGGCACCAAC 60.135 47.619 0.00 0.00 0.00 3.77
1767 2164 1.189752 TGAACAAAGCAAGGCACCAA 58.810 45.000 0.00 0.00 0.00 3.67
1768 2165 1.189752 TTGAACAAAGCAAGGCACCA 58.810 45.000 0.00 0.00 0.00 4.17
1769 2166 2.307934 TTTGAACAAAGCAAGGCACC 57.692 45.000 0.00 0.00 0.00 5.01
1792 2189 6.769512 TCTCTGAACAGCTACCTATGTTTTT 58.230 36.000 0.00 0.00 39.66 1.94
1793 2190 6.360370 TCTCTGAACAGCTACCTATGTTTT 57.640 37.500 0.00 0.00 39.66 2.43
1794 2191 6.360370 TTCTCTGAACAGCTACCTATGTTT 57.640 37.500 0.00 0.00 39.66 2.83
1795 2192 6.070538 ACATTCTCTGAACAGCTACCTATGTT 60.071 38.462 0.00 0.00 42.17 2.71
1796 2193 5.423610 ACATTCTCTGAACAGCTACCTATGT 59.576 40.000 0.00 0.00 0.00 2.29
1797 2194 5.911752 ACATTCTCTGAACAGCTACCTATG 58.088 41.667 0.00 0.00 0.00 2.23
1802 2199 5.049129 AGCAAAACATTCTCTGAACAGCTAC 60.049 40.000 0.00 0.00 0.00 3.58
1810 2207 5.277297 CGTGTTGTAGCAAAACATTCTCTGA 60.277 40.000 3.51 0.00 39.57 3.27
1834 2231 5.798125 TCTCCACATGTATCAATCTCCTC 57.202 43.478 0.00 0.00 0.00 3.71
1937 2385 5.869888 AGAGGTAACATCTGATTTCGTTCAC 59.130 40.000 0.00 0.00 41.41 3.18
1939 2387 6.814146 AGAAGAGGTAACATCTGATTTCGTTC 59.186 38.462 0.00 0.00 41.41 3.95
1942 2393 8.879342 ATTAGAAGAGGTAACATCTGATTTCG 57.121 34.615 0.00 0.00 41.41 3.46
1956 2407 4.705507 TGTAACGCAGAGATTAGAAGAGGT 59.294 41.667 0.00 0.00 0.00 3.85
1957 2408 5.250235 TGTAACGCAGAGATTAGAAGAGG 57.750 43.478 0.00 0.00 0.00 3.69
1960 2411 6.276847 AGGAATGTAACGCAGAGATTAGAAG 58.723 40.000 0.00 0.00 0.00 2.85
1963 2414 6.142480 CGTTAGGAATGTAACGCAGAGATTAG 59.858 42.308 3.48 0.00 46.19 1.73
1964 2415 5.975344 CGTTAGGAATGTAACGCAGAGATTA 59.025 40.000 3.48 0.00 46.19 1.75
1966 2417 4.360563 CGTTAGGAATGTAACGCAGAGAT 58.639 43.478 3.48 0.00 46.19 2.75
1967 2418 3.766151 CGTTAGGAATGTAACGCAGAGA 58.234 45.455 3.48 0.00 46.19 3.10
1978 2429 3.120199 CCAAGTCAAGTGCGTTAGGAATG 60.120 47.826 0.00 0.00 0.00 2.67
2073 2524 1.736681 GATCTGCAAGCTCAGTTGGTC 59.263 52.381 2.63 0.00 35.63 4.02
2078 2529 3.095332 TGAGTAGATCTGCAAGCTCAGT 58.905 45.455 13.64 0.00 35.63 3.41
2154 2605 3.050275 GGTGTCTCGGGCTGCAAC 61.050 66.667 0.50 0.00 0.00 4.17
2159 2610 4.988716 TCCACGGTGTCTCGGGCT 62.989 66.667 7.45 0.00 31.23 5.19
2210 2661 0.616891 TGATGCACTGCCACTCATCT 59.383 50.000 0.00 0.00 37.00 2.90
2231 2682 8.532186 AAAATTATACCATGCATACCTGTTGA 57.468 30.769 0.00 0.00 0.00 3.18
2254 2705 6.642950 ACGAATCAACAACAACAAGAACAAAA 59.357 30.769 0.00 0.00 0.00 2.44
2264 2715 5.510671 ACTGATCAACGAATCAACAACAAC 58.489 37.500 0.00 0.00 35.32 3.32
2274 2725 7.387673 TCATTTGTCACTTACTGATCAACGAAT 59.612 33.333 0.00 0.00 0.00 3.34
2301 2752 5.723295 CAAAAAGGGATCCTACAACCATTG 58.277 41.667 12.58 3.44 31.13 2.82
2364 2815 9.936759 TTTTAGTTGGATTTCAAAAGAAACAGT 57.063 25.926 0.00 0.00 37.08 3.55
2686 3137 4.826274 TCTGTAAACCTTCTCCCATCAG 57.174 45.455 0.00 0.00 0.00 2.90
2774 3225 3.093814 TGACGAGTAGGCCTTGATACAA 58.906 45.455 12.58 0.00 0.00 2.41
2793 3244 3.262915 TCACCACATATGTCACCACATGA 59.737 43.478 5.07 0.00 43.54 3.07
2810 3261 4.474394 TGGGTGTAAAATGAACATCACCA 58.526 39.130 18.33 7.81 44.63 4.17
2846 3297 6.070194 CCCCAAGGACAATTCTCTCTTTACTA 60.070 42.308 0.00 0.00 33.47 1.82
2873 3324 2.100989 ACTGTAACCTCGACCTCCATC 58.899 52.381 0.00 0.00 0.00 3.51
2966 3417 0.033011 GAGAGGGGTGTAGAGCTGGA 60.033 60.000 0.00 0.00 0.00 3.86
2970 3421 1.205893 CAACAGAGAGGGGTGTAGAGC 59.794 57.143 0.00 0.00 0.00 4.09
2992 3443 9.178758 ACTAATAAACAGACCAATCCATTTCTC 57.821 33.333 0.00 0.00 0.00 2.87
3031 3540 9.555727 GCCAGAGGTTTAGATAACATAATACAA 57.444 33.333 0.00 0.00 0.00 2.41
3047 3556 1.075374 TGCAACATAGGCCAGAGGTTT 59.925 47.619 5.01 0.00 0.00 3.27
3057 3566 5.587844 AGACAAGCTTAGAATGCAACATAGG 59.412 40.000 0.00 0.00 0.00 2.57
3093 3609 6.349300 GCCAGTTATTTGTCTCCAGATAGAA 58.651 40.000 0.00 0.00 0.00 2.10
3097 3613 3.525199 AGGCCAGTTATTTGTCTCCAGAT 59.475 43.478 5.01 0.00 0.00 2.90
3120 3636 2.443887 ACAACCGTACGTGCATAAGT 57.556 45.000 15.21 0.00 0.00 2.24
3162 3678 4.799564 AACAAGCAAACAACTCCAAGAA 57.200 36.364 0.00 0.00 0.00 2.52
3164 3680 6.980397 AGAAATAACAAGCAAACAACTCCAAG 59.020 34.615 0.00 0.00 0.00 3.61
3175 3691 5.851720 TCAATTGGCAGAAATAACAAGCAA 58.148 33.333 5.42 0.00 0.00 3.91
3178 3694 7.622672 GCAACATCAATTGGCAGAAATAACAAG 60.623 37.037 5.42 0.00 0.00 3.16
3219 3735 0.804989 CCACAATCGCAGGGAGAAAC 59.195 55.000 0.00 0.00 0.00 2.78
3226 3742 1.069022 CAACTGAACCACAATCGCAGG 60.069 52.381 0.00 0.00 0.00 4.85
3231 3747 6.038714 AGAGTTCTTTCAACTGAACCACAATC 59.961 38.462 0.00 0.00 42.32 2.67
3238 3754 6.313905 TCTTGTGAGAGTTCTTTCAACTGAAC 59.686 38.462 0.00 0.00 41.84 3.18
3240 3756 5.812642 GTCTTGTGAGAGTTCTTTCAACTGA 59.187 40.000 0.00 0.00 31.07 3.41
3250 3766 3.477210 ACAAGGGTCTTGTGAGAGTTC 57.523 47.619 11.88 0.00 31.07 3.01
3300 3816 6.199393 GTGGCCGAGAAATGTAATTATTCAC 58.801 40.000 0.00 0.00 33.67 3.18
3315 3831 2.915659 ACGTCAAGGTGGCCGAGA 60.916 61.111 0.00 0.00 0.00 4.04
3369 4256 2.747446 AGACAATTTGTATGACACGGCC 59.253 45.455 1.15 0.00 0.00 6.13
3371 4258 5.637810 ACACTAGACAATTTGTATGACACGG 59.362 40.000 6.92 0.00 0.00 4.94
3395 4282 3.118884 GCCCGTTTAGATGACTGGAGTAA 60.119 47.826 0.00 0.00 0.00 2.24
3398 4285 1.473434 GGCCCGTTTAGATGACTGGAG 60.473 57.143 0.00 0.00 0.00 3.86
3422 4309 6.295292 GCCCAAGTCATCCTAATTTGAAGTTT 60.295 38.462 0.00 0.00 0.00 2.66
3423 4310 5.185828 GCCCAAGTCATCCTAATTTGAAGTT 59.814 40.000 0.00 0.00 0.00 2.66
3433 4320 2.050144 GATCTGGCCCAAGTCATCCTA 58.950 52.381 0.00 0.00 0.00 2.94
3435 4322 0.179006 GGATCTGGCCCAAGTCATCC 60.179 60.000 0.00 0.00 0.00 3.51
3439 4326 0.466922 CCATGGATCTGGCCCAAGTC 60.467 60.000 5.56 0.00 37.22 3.01
3441 4328 4.593033 CCATGGATCTGGCCCAAG 57.407 61.111 5.56 0.00 37.22 3.61
3447 4334 1.735376 GCAGCAAGCCATGGATCTGG 61.735 60.000 18.40 2.17 39.45 3.86
3869 7006 3.056891 CCCAACTTAATTGCAACACCGAT 60.057 43.478 0.00 0.00 36.93 4.18
3882 7019 2.282603 GGTGGCCGCCCAACTTAA 60.283 61.111 25.93 0.00 45.80 1.85
3906 7043 2.335729 CGTGTTGCAGCATTGGCA 59.664 55.556 6.50 0.00 44.61 4.92
3910 7047 1.279539 CGACACGTGTTGCAGCATT 59.720 52.632 24.26 0.00 0.00 3.56
3911 7048 1.887242 ACGACACGTGTTGCAGCAT 60.887 52.632 31.39 12.44 39.18 3.79
3922 7059 1.151777 ACCTCTTGCAACACGACACG 61.152 55.000 0.00 0.00 0.00 4.49
3952 7089 1.795170 CTGGGGCCAACAACGACTTG 61.795 60.000 4.39 0.00 0.00 3.16
3953 7090 1.528309 CTGGGGCCAACAACGACTT 60.528 57.895 4.39 0.00 0.00 3.01
3956 7093 2.203280 CACTGGGGCCAACAACGA 60.203 61.111 4.39 0.00 0.00 3.85
3966 7103 2.669569 CGGCTTGTGTCACTGGGG 60.670 66.667 4.27 0.00 0.00 4.96
3969 7106 1.073964 CATCTCGGCTTGTGTCACTG 58.926 55.000 4.27 0.00 0.00 3.66
3970 7107 0.969149 TCATCTCGGCTTGTGTCACT 59.031 50.000 4.27 0.00 0.00 3.41
3973 7110 1.078759 CGGTCATCTCGGCTTGTGTC 61.079 60.000 0.00 0.00 0.00 3.67
3976 7113 2.125512 GCGGTCATCTCGGCTTGT 60.126 61.111 0.00 0.00 0.00 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.