Multiple sequence alignment - TraesCS2B01G527400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G527400 chr2B 100.000 5023 0 0 1 5023 721925791 721920769 0.000000e+00 9276.0
1 TraesCS2B01G527400 chr2B 78.832 411 71 11 4616 5023 26391817 26392214 3.860000e-66 263.0
2 TraesCS2B01G527400 chr2B 78.589 411 72 11 4616 5023 26358064 26358461 1.790000e-64 257.0
3 TraesCS2B01G527400 chr2B 79.651 172 29 6 4614 4781 754781978 754781809 8.830000e-23 119.0
4 TraesCS2B01G527400 chr2D 89.901 2614 188 37 2343 4921 594473537 594470965 0.000000e+00 3295.0
5 TraesCS2B01G527400 chr2D 89.561 1322 86 27 1044 2338 594475145 594473849 0.000000e+00 1629.0
6 TraesCS2B01G527400 chr2D 81.742 838 74 34 30 803 594476433 594475611 1.190000e-175 627.0
7 TraesCS2B01G527400 chr2D 94.891 137 6 1 796 932 594475484 594475349 3.940000e-51 213.0
8 TraesCS2B01G527400 chr2A 90.948 1889 124 18 2343 4209 729130428 729128565 0.000000e+00 2497.0
9 TraesCS2B01G527400 chr2A 85.421 926 71 32 1461 2338 729131651 729130742 0.000000e+00 904.0
10 TraesCS2B01G527400 chr2A 93.398 515 34 0 936 1450 729132270 729131756 0.000000e+00 763.0
11 TraesCS2B01G527400 chr2A 91.363 521 42 3 3653 4172 729080634 729080116 0.000000e+00 710.0
12 TraesCS2B01G527400 chr2A 90.859 361 33 0 3255 3615 729080995 729080635 7.560000e-133 484.0
13 TraesCS2B01G527400 chr2A 87.535 353 29 7 4223 4565 729080102 729079755 1.310000e-105 394.0
14 TraesCS2B01G527400 chr2A 82.561 367 59 4 4655 5018 329695834 329695470 8.110000e-83 318.0
15 TraesCS2B01G527400 chr2A 79.853 407 59 16 4616 5018 16777453 16777840 4.950000e-70 276.0
16 TraesCS2B01G527400 chr2A 79.093 397 55 20 4616 5001 83993781 83994160 1.080000e-61 248.0
17 TraesCS2B01G527400 chr2A 80.564 319 56 6 4703 5018 134264276 134263961 1.810000e-59 241.0
18 TraesCS2B01G527400 chr2A 86.364 132 17 1 801 932 729132526 729132396 5.240000e-30 143.0
19 TraesCS2B01G527400 chr2A 92.453 53 4 0 796 848 729132507 729132455 5.390000e-10 76.8
20 TraesCS2B01G527400 chr7D 82.508 303 43 8 4721 5018 72118922 72119219 1.790000e-64 257.0
21 TraesCS2B01G527400 chr7D 79.195 149 27 4 4611 4757 373237579 373237433 3.200000e-17 100.0
22 TraesCS2B01G527400 chr1B 81.288 326 53 6 4694 5016 200295353 200295673 1.790000e-64 257.0
23 TraesCS2B01G527400 chr3D 77.859 411 79 11 4618 5022 522296999 522296595 1.400000e-60 244.0
24 TraesCS2B01G527400 chr3A 81.600 125 13 9 6 120 429671177 429671301 1.490000e-15 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G527400 chr2B 721920769 721925791 5022 True 9276.000000 9276 100.00000 1 5023 1 chr2B.!!$R1 5022
1 TraesCS2B01G527400 chr2D 594470965 594476433 5468 True 1441.000000 3295 89.02375 30 4921 4 chr2D.!!$R1 4891
2 TraesCS2B01G527400 chr2A 729128565 729132526 3961 True 876.760000 2497 89.71680 796 4209 5 chr2A.!!$R4 3413
3 TraesCS2B01G527400 chr2A 729079755 729080995 1240 True 529.333333 710 89.91900 3255 4565 3 chr2A.!!$R3 1310

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
506 550 0.035820 CTTTTCCGGGTCGATGGGAA 60.036 55.0 0.0 9.81 38.03 3.97 F
2188 2665 0.250513 AAACTCAGTCATCCGCTCCC 59.749 55.0 0.0 0.00 0.00 4.30 F
2438 3230 1.098050 GGTCACCATGCCAATCTGAC 58.902 55.0 0.0 0.00 0.00 3.51 F
3229 4050 0.044855 AGAGCCCCCTGAAGGTGTAT 59.955 55.0 0.0 0.00 0.00 2.29 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2274 2755 1.281867 CCACAGGGGCTGATGTTTAGA 59.718 52.381 0.00 0.00 35.18 2.10 R
3155 3976 0.333993 ATCTGCAAGGTGCTCCCAAT 59.666 50.000 0.00 0.00 45.31 3.16 R
3758 4579 0.879090 GACAACGGTGTTTCCCCATC 59.121 55.000 7.93 0.00 38.41 3.51 R
4989 5821 0.027848 GAGTTCGGAGTCGACGGATC 59.972 60.000 10.46 8.32 45.92 3.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.239908 CAAAACATGGCAATTTTTAGGTCC 57.760 37.500 9.41 0.00 0.00 4.46
24 25 5.823861 AAACATGGCAATTTTTAGGTCCT 57.176 34.783 0.00 0.00 0.00 3.85
25 26 5.823861 AACATGGCAATTTTTAGGTCCTT 57.176 34.783 0.00 0.00 0.00 3.36
26 27 5.823861 ACATGGCAATTTTTAGGTCCTTT 57.176 34.783 0.00 0.00 0.00 3.11
27 28 6.186420 ACATGGCAATTTTTAGGTCCTTTT 57.814 33.333 0.00 0.00 0.00 2.27
28 29 6.230472 ACATGGCAATTTTTAGGTCCTTTTC 58.770 36.000 0.00 0.00 0.00 2.29
112 115 9.995003 TTTTTACTTTCTCACATGGCAATTTAT 57.005 25.926 0.00 0.00 0.00 1.40
113 116 9.995003 TTTTACTTTCTCACATGGCAATTTATT 57.005 25.926 0.00 0.00 0.00 1.40
158 161 9.950680 AGCATGGAGTTTTAATGATTAATAACG 57.049 29.630 0.00 0.00 0.00 3.18
256 297 7.669089 AAGAGGGGACATTTTTCTTTTTACA 57.331 32.000 0.00 0.00 0.00 2.41
279 320 0.764271 AAAAGTGTTTGGGCCATGGG 59.236 50.000 15.13 0.00 0.00 4.00
292 333 3.181455 GGGCCATGGGAAATTTATTGGAC 60.181 47.826 15.13 8.28 0.00 4.02
295 336 5.118286 GCCATGGGAAATTTATTGGACTTG 58.882 41.667 15.13 0.00 0.00 3.16
296 337 5.118286 CCATGGGAAATTTATTGGACTTGC 58.882 41.667 2.85 0.00 0.00 4.01
297 338 4.448537 TGGGAAATTTATTGGACTTGCG 57.551 40.909 0.00 0.00 0.00 4.85
302 345 6.869388 GGGAAATTTATTGGACTTGCGTAAAA 59.131 34.615 0.00 0.00 0.00 1.52
361 404 9.562408 TTTATAAAACAGACCATGTCAGTTGTA 57.438 29.630 5.89 5.57 43.00 2.41
444 488 2.058593 AACTGCTATTTGGGCCTAGC 57.941 50.000 14.59 14.59 40.60 3.42
468 512 2.851263 TGTTTTCCTACGTGCTCCAT 57.149 45.000 0.00 0.00 0.00 3.41
488 532 3.721172 ATGGGCCAGGATCGACCCT 62.721 63.158 13.78 0.00 43.25 4.34
490 534 2.680370 GGGCCAGGATCGACCCTTT 61.680 63.158 4.39 0.00 39.42 3.11
491 535 1.303282 GGCCAGGATCGACCCTTTT 59.697 57.895 0.00 0.00 40.05 2.27
492 536 0.748367 GGCCAGGATCGACCCTTTTC 60.748 60.000 0.00 0.00 40.05 2.29
494 538 0.462047 CCAGGATCGACCCTTTTCCG 60.462 60.000 0.00 0.00 40.05 4.30
506 550 0.035820 CTTTTCCGGGTCGATGGGAA 60.036 55.000 0.00 9.81 38.03 3.97
508 552 1.196104 TTTCCGGGTCGATGGGAACT 61.196 55.000 12.57 0.00 39.43 3.01
533 577 2.728180 CGATCGATCGCCCAAGGA 59.272 61.111 32.34 0.00 43.84 3.36
537 581 1.121407 ATCGATCGCCCAAGGATCCA 61.121 55.000 15.82 0.00 37.58 3.41
580 643 3.677596 GCGGTGAAGAAGAGAAAGAAGAG 59.322 47.826 0.00 0.00 0.00 2.85
584 647 5.296748 GTGAAGAAGAGAAAGAAGAGTGCT 58.703 41.667 0.00 0.00 0.00 4.40
585 648 5.177327 GTGAAGAAGAGAAAGAAGAGTGCTG 59.823 44.000 0.00 0.00 0.00 4.41
588 651 1.977129 AGAGAAAGAAGAGTGCTGGCT 59.023 47.619 0.00 0.00 0.00 4.75
622 685 1.406887 GGATCCGCTAAGAACTGGCAA 60.407 52.381 0.00 0.00 0.00 4.52
624 687 0.321298 TCCGCTAAGAACTGGCAACC 60.321 55.000 0.00 0.00 0.00 3.77
633 696 2.202932 CTGGCAACCGATCCGAGG 60.203 66.667 0.00 0.00 0.00 4.63
663 738 1.450312 GGAAGCGTGGAGGTCATGG 60.450 63.158 0.00 0.00 33.10 3.66
682 757 1.410850 GGGATCGGATCAGGGAAGCA 61.411 60.000 18.99 0.00 0.00 3.91
688 763 0.743097 GGATCAGGGAAGCACAATGC 59.257 55.000 0.00 0.00 45.46 3.56
690 765 0.333993 ATCAGGGAAGCACAATGCCT 59.666 50.000 0.00 0.00 46.52 4.75
693 768 0.613012 AGGGAAGCACAATGCCTTCC 60.613 55.000 19.09 19.09 46.52 3.46
695 770 1.607801 GGAAGCACAATGCCTTCCCC 61.608 60.000 17.44 0.88 46.52 4.81
696 771 0.613012 GAAGCACAATGCCTTCCCCT 60.613 55.000 0.00 0.00 46.52 4.79
697 772 0.613012 AAGCACAATGCCTTCCCCTC 60.613 55.000 0.00 0.00 46.52 4.30
698 773 1.304381 GCACAATGCCTTCCCCTCA 60.304 57.895 0.00 0.00 37.42 3.86
699 774 1.318158 GCACAATGCCTTCCCCTCAG 61.318 60.000 0.00 0.00 37.42 3.35
700 775 0.682209 CACAATGCCTTCCCCTCAGG 60.682 60.000 0.00 0.00 34.08 3.86
701 776 0.846427 ACAATGCCTTCCCCTCAGGA 60.846 55.000 0.00 0.00 45.68 3.86
715 790 2.502295 CTCAGGAAAGCTGAAGTTGCT 58.498 47.619 0.00 0.00 43.32 3.91
740 815 0.900647 CGAAGGGCTCCTATCCGGAT 60.901 60.000 22.95 22.95 42.12 4.18
761 836 1.759881 GGAGAGCTGATCATGGGGG 59.240 63.158 0.00 0.00 0.00 5.40
766 841 0.706433 AGCTGATCATGGGGGTGTTT 59.294 50.000 0.00 0.00 0.00 2.83
775 850 0.768622 TGGGGGTGTTTGACTTCGAT 59.231 50.000 0.00 0.00 0.00 3.59
830 1038 2.366435 GGAAGGGGGTCGGATCCA 60.366 66.667 13.41 0.00 0.00 3.41
856 1064 1.625315 CGCAAGGGGATCATATCAGGA 59.375 52.381 0.00 0.00 0.00 3.86
904 1112 0.607112 TGAAGCTGCTCCTCACAGAG 59.393 55.000 1.00 0.00 37.32 3.35
932 1140 6.213677 GTTGAAAACCAGGGTAAAGAATCAC 58.786 40.000 0.00 0.00 42.21 3.06
934 1142 5.534654 TGAAAACCAGGGTAAAGAATCACAG 59.465 40.000 0.00 0.00 0.00 3.66
967 1297 0.809241 CGAAGATCTGGGCACTCTGC 60.809 60.000 0.00 0.00 44.08 4.26
993 1323 3.192799 TCTCGCCGGAGAGATTTCT 57.807 52.632 31.15 0.00 44.28 2.52
1008 1338 3.197766 AGATTTCTAGTTCGATGGTGGCA 59.802 43.478 0.00 0.00 0.00 4.92
1025 1355 2.183409 CAGAATTTGCACTCCGGGG 58.817 57.895 0.00 0.00 0.00 5.73
1037 1367 3.421844 CACTCCGGGGAAAAGAAAAGAT 58.578 45.455 9.33 0.00 0.00 2.40
1038 1368 3.191371 CACTCCGGGGAAAAGAAAAGATG 59.809 47.826 9.33 0.00 0.00 2.90
1040 1370 1.204704 CCGGGGAAAAGAAAAGATGGC 59.795 52.381 0.00 0.00 0.00 4.40
1066 1396 1.587043 GGAAGAGAAGCCCGTTTGCC 61.587 60.000 0.00 0.00 0.00 4.52
1082 1412 1.667236 TGCCCATTAGATTCGTGCTG 58.333 50.000 0.00 0.00 0.00 4.41
1108 1438 1.207089 TGATCCGTGATCTGTGGGAAC 59.793 52.381 12.97 0.00 39.56 3.62
1128 1458 2.501723 ACACTTCCCAAGATACGAGCAT 59.498 45.455 0.00 0.00 0.00 3.79
1150 1480 1.348064 TCTCGCCCTTCTCTCCAAAA 58.652 50.000 0.00 0.00 0.00 2.44
1155 1485 1.895131 GCCCTTCTCTCCAAAATGCAA 59.105 47.619 0.00 0.00 0.00 4.08
1330 1662 3.560025 GGAGGTGAGCAAGGATGAAGAAA 60.560 47.826 0.00 0.00 0.00 2.52
1352 1684 8.800332 AGAAACAAAATCTGAATCAATAGCAGT 58.200 29.630 0.00 0.00 0.00 4.40
1450 1869 6.929049 TGAGGACATGAGTAAGTAAACAACTG 59.071 38.462 0.00 0.00 38.88 3.16
1476 1902 5.163824 ACACATGCTTTTCACTATGATCGTG 60.164 40.000 0.00 0.00 0.00 4.35
1486 1912 7.576750 TTCACTATGATCGTGTTTACAGTTC 57.423 36.000 0.00 0.00 34.14 3.01
1507 1933 5.804692 TCGTTTGTTTTTCTACTTGCTCA 57.195 34.783 0.00 0.00 0.00 4.26
1535 1961 4.687483 GCACTTTTCACTATGCAAGCAAAT 59.313 37.500 0.00 0.00 38.00 2.32
1536 1962 5.863397 GCACTTTTCACTATGCAAGCAAATA 59.137 36.000 0.00 0.00 38.00 1.40
1551 1977 9.695526 TGCAAGCAAATATAATTACATCCATTC 57.304 29.630 0.00 0.00 0.00 2.67
1552 1978 9.918630 GCAAGCAAATATAATTACATCCATTCT 57.081 29.630 0.00 0.00 0.00 2.40
1608 2073 8.689061 AGAGAATGTTTGCATTGCAGATATAAA 58.311 29.630 11.76 0.00 44.61 1.40
1713 2178 8.299570 CAAAGAAATTGGCTACTGTAAACTCAT 58.700 33.333 0.00 0.00 35.27 2.90
1716 2181 6.743575 AATTGGCTACTGTAAACTCATCAC 57.256 37.500 0.00 0.00 0.00 3.06
1728 2193 8.856153 TGTAAACTCATCACATTTAGCCTTAA 57.144 30.769 0.00 0.00 0.00 1.85
1769 2234 4.503007 ACGCATATTGTCTTACACTTAGCG 59.497 41.667 0.00 0.00 44.98 4.26
1781 2246 7.705325 GTCTTACACTTAGCGAAAAGATCCATA 59.295 37.037 4.41 0.00 0.00 2.74
1782 2247 7.705325 TCTTACACTTAGCGAAAAGATCCATAC 59.295 37.037 4.41 0.00 0.00 2.39
1786 2251 5.581085 ACTTAGCGAAAAGATCCATACACAC 59.419 40.000 4.41 0.00 0.00 3.82
1788 2253 4.323417 AGCGAAAAGATCCATACACACAA 58.677 39.130 0.00 0.00 0.00 3.33
1790 2255 5.240623 AGCGAAAAGATCCATACACACAAAA 59.759 36.000 0.00 0.00 0.00 2.44
1825 2291 9.495572 AAGAGAGTTGACTGAAATAAGTTTAGG 57.504 33.333 0.00 0.00 0.00 2.69
1827 2293 7.974504 AGAGTTGACTGAAATAAGTTTAGGGA 58.025 34.615 0.00 0.00 0.00 4.20
1828 2294 7.878644 AGAGTTGACTGAAATAAGTTTAGGGAC 59.121 37.037 0.00 0.00 0.00 4.46
1831 2297 5.929992 TGACTGAAATAAGTTTAGGGACACG 59.070 40.000 0.00 0.00 0.00 4.49
1842 2310 5.357878 AGTTTAGGGACACGACGACATATTA 59.642 40.000 0.00 0.00 0.00 0.98
1848 2316 4.208460 GGACACGACGACATATTATTGTGG 59.792 45.833 0.00 0.00 31.76 4.17
1872 2340 8.424918 TGGAAATTATTGTTGAGGTAGCAAAAA 58.575 29.630 0.00 0.00 33.06 1.94
1891 2359 5.972107 AAAATTAGATTGAGCTGCACAGT 57.028 34.783 1.02 0.00 0.00 3.55
1911 2379 5.011329 ACAGTTTTCCTGCATCACATCAAAT 59.989 36.000 0.00 0.00 45.68 2.32
1938 2406 1.439679 CGCCTTACTGAACCTTCACC 58.560 55.000 0.00 0.00 32.90 4.02
1951 2419 3.020984 ACCTTCACCGTGTTTGTTCATT 58.979 40.909 0.00 0.00 0.00 2.57
1957 2431 4.214545 TCACCGTGTTTGTTCATTATCCAC 59.785 41.667 0.00 0.00 0.00 4.02
1970 2444 5.505780 TCATTATCCACGACCTCCAAAAAT 58.494 37.500 0.00 0.00 0.00 1.82
2005 2479 3.259314 TGCTGGGGCACTCCACAT 61.259 61.111 0.00 0.00 46.55 3.21
2016 2490 2.496070 GCACTCCACATACACACTCCTA 59.504 50.000 0.00 0.00 0.00 2.94
2043 2517 2.159382 CCACTGAAACCCGTTATTGCT 58.841 47.619 0.00 0.00 0.00 3.91
2081 2556 7.271223 CGTTTTGTCTAGCAATGTTTATGGAAG 59.729 37.037 1.30 0.00 36.89 3.46
2105 2580 7.861629 AGATTACCTGTGAAACCATGATCTTA 58.138 34.615 0.00 0.00 34.36 2.10
2114 2589 7.884877 TGTGAAACCATGATCTTACTGAAGATT 59.115 33.333 0.00 0.00 44.03 2.40
2157 2632 4.551702 ACATACAACAGCCTCACACATA 57.448 40.909 0.00 0.00 0.00 2.29
2159 2634 5.500234 ACATACAACAGCCTCACACATAAT 58.500 37.500 0.00 0.00 0.00 1.28
2172 2649 7.652507 GCCTCACACATAATAGTAGGACTAAAC 59.347 40.741 0.00 0.00 33.89 2.01
2182 2659 7.826918 ATAGTAGGACTAAACTCAGTCATCC 57.173 40.000 5.69 0.00 45.64 3.51
2184 2661 2.166664 AGGACTAAACTCAGTCATCCGC 59.833 50.000 5.69 0.00 45.64 5.54
2188 2665 0.250513 AAACTCAGTCATCCGCTCCC 59.749 55.000 0.00 0.00 0.00 4.30
2192 2669 2.765807 AGTCATCCGCTCCCAGGG 60.766 66.667 0.00 0.00 0.00 4.45
2206 2683 2.610859 AGGGAGCCACCGTCCAAT 60.611 61.111 0.00 0.00 40.11 3.16
2207 2684 2.438434 GGGAGCCACCGTCCAATG 60.438 66.667 0.00 0.00 40.11 2.82
2228 2705 2.353109 GGGAACAAAGAGCAATGGAAGC 60.353 50.000 0.00 0.00 0.00 3.86
2233 2710 2.758979 CAAAGAGCAATGGAAGCTGGAT 59.241 45.455 0.00 0.00 43.58 3.41
2244 2721 2.234908 GGAAGCTGGATGACTACACAGT 59.765 50.000 0.00 0.00 37.87 3.55
2289 2771 5.654497 CAGAATTTTCTAAACATCAGCCCC 58.346 41.667 0.00 0.00 35.34 5.80
2314 2796 3.070878 TGGACTGATGTACTCTGCAACAA 59.929 43.478 0.00 0.00 0.00 2.83
2315 2797 4.256920 GGACTGATGTACTCTGCAACAAT 58.743 43.478 0.00 0.00 0.00 2.71
2316 2798 5.046663 TGGACTGATGTACTCTGCAACAATA 60.047 40.000 0.00 0.00 0.00 1.90
2317 2799 5.521735 GGACTGATGTACTCTGCAACAATAG 59.478 44.000 0.00 0.00 0.00 1.73
2318 2800 6.286240 ACTGATGTACTCTGCAACAATAGA 57.714 37.500 9.00 0.00 0.00 1.98
2331 2813 9.098355 TCTGCAACAATAGATACATACAAACTC 57.902 33.333 0.00 0.00 0.00 3.01
2371 3163 7.341769 TGTGAATTTGAAGGAAAAAGAGAAGGA 59.658 33.333 0.00 0.00 0.00 3.36
2391 3183 9.122779 AGAAGGATCTCAATCTCAATCAATTTC 57.877 33.333 0.00 0.00 32.12 2.17
2393 3185 8.223177 AGGATCTCAATCTCAATCAATTTCAC 57.777 34.615 0.00 0.00 32.12 3.18
2425 3217 9.459640 GTGTTAAGAAAATAAAGAAAGGTCACC 57.540 33.333 0.00 0.00 0.00 4.02
2438 3230 1.098050 GGTCACCATGCCAATCTGAC 58.902 55.000 0.00 0.00 0.00 3.51
2443 3235 2.679837 CACCATGCCAATCTGACTGTAC 59.320 50.000 0.00 0.00 0.00 2.90
2450 3242 5.744171 TGCCAATCTGACTGTACATTATGT 58.256 37.500 2.58 2.58 0.00 2.29
2501 3295 9.965824 CTCTTTATTAAAGGAACAGAAAAGCAA 57.034 29.630 14.60 0.00 39.01 3.91
2505 3299 9.877178 TTATTAAAGGAACAGAAAAGCAAAACA 57.123 25.926 0.00 0.00 0.00 2.83
2506 3300 8.785329 ATTAAAGGAACAGAAAAGCAAAACAA 57.215 26.923 0.00 0.00 0.00 2.83
2507 3301 6.480524 AAAGGAACAGAAAAGCAAAACAAC 57.519 33.333 0.00 0.00 0.00 3.32
2508 3302 5.146010 AGGAACAGAAAAGCAAAACAACA 57.854 34.783 0.00 0.00 0.00 3.33
2513 3307 5.984627 ACAGAAAAGCAAAACAACAACAAC 58.015 33.333 0.00 0.00 0.00 3.32
2523 3317 3.311486 ACAACAACAACAACAACCCTG 57.689 42.857 0.00 0.00 0.00 4.45
2559 3353 4.362279 CTTGTTTTCTGAACATGTGGGTG 58.638 43.478 0.00 0.00 0.00 4.61
2561 3355 3.380004 TGTTTTCTGAACATGTGGGTGTC 59.620 43.478 0.00 0.00 0.00 3.67
2579 3373 4.508124 GGTGTCAGTCTACTTGTTGTTCAG 59.492 45.833 0.00 0.00 0.00 3.02
2581 3375 4.161565 TGTCAGTCTACTTGTTGTTCAGGT 59.838 41.667 0.00 0.00 39.63 4.00
2612 3406 8.853077 ATAGATTGAAGTGTCTGTTTGATTGA 57.147 30.769 0.00 0.00 0.00 2.57
2613 3407 7.199541 AGATTGAAGTGTCTGTTTGATTGAG 57.800 36.000 0.00 0.00 0.00 3.02
2635 3429 8.818622 TGAGGTCTAACTATAGCTGAAACTTA 57.181 34.615 0.00 0.00 0.00 2.24
2681 3478 9.129209 GGTAGCAGTAATCAAAGATTTTGAAAC 57.871 33.333 8.16 9.35 31.55 2.78
2715 3512 5.126061 CCTAGCTGAAAAGTAATGTTGGCAT 59.874 40.000 0.00 0.00 36.80 4.40
2725 3522 5.072741 AGTAATGTTGGCATGAGAACTTGT 58.927 37.500 0.00 0.00 35.15 3.16
2758 3558 3.091633 AGATTGCAAAGCTACCCATGT 57.908 42.857 1.71 0.00 43.24 3.21
2760 3560 2.284754 TTGCAAAGCTACCCATGTGA 57.715 45.000 0.00 0.00 0.00 3.58
2762 3562 1.350684 TGCAAAGCTACCCATGTGAGA 59.649 47.619 0.00 0.00 0.00 3.27
2775 3575 6.790319 ACCCATGTGAGAACTTAAATAAGGT 58.210 36.000 5.27 0.00 37.62 3.50
2801 3601 2.818751 ATAGGACAAATGCCGGGAAA 57.181 45.000 0.00 0.00 0.00 3.13
2804 3604 3.094484 AGGACAAATGCCGGGAAAATA 57.906 42.857 0.00 0.00 0.00 1.40
2810 3610 5.014202 ACAAATGCCGGGAAAATAGTACTT 58.986 37.500 0.00 0.00 0.00 2.24
2863 3663 5.700402 AAAGCTCTACATTCCACATAGGT 57.300 39.130 0.00 0.00 39.02 3.08
2883 3683 9.769093 CATAGGTAACACAAGTTTAATTAGTGC 57.231 33.333 2.60 0.00 39.15 4.40
2964 3784 5.860716 GCACTTTTCACTCCATTCATTCTTC 59.139 40.000 0.00 0.00 0.00 2.87
2988 3808 9.762381 TTCAACATTTGTTCTATAATTAGGGGT 57.238 29.630 0.00 0.00 35.83 4.95
3018 3838 5.235850 TCCTTTGTATGTAGCCAAACTGA 57.764 39.130 0.00 0.00 0.00 3.41
3038 3858 6.435164 ACTGATAACTTAATGCAAAGGGGAT 58.565 36.000 3.31 0.00 0.00 3.85
3040 3860 6.430864 TGATAACTTAATGCAAAGGGGATCA 58.569 36.000 3.31 5.73 0.00 2.92
3047 3867 1.188863 GCAAAGGGGATCACATGCTT 58.811 50.000 11.17 0.00 0.00 3.91
3057 3877 4.035675 GGGATCACATGCTTAGTTTGTAGC 59.964 45.833 0.00 0.00 37.89 3.58
3155 3976 2.358582 CGTATGCCAAGAAATGCCATCA 59.641 45.455 0.00 0.00 0.00 3.07
3181 4002 2.977772 GCACCTTGCAGATCTACTCT 57.022 50.000 0.00 0.00 44.26 3.24
3204 4025 5.057819 TGTTAAGGTTGCAGAAATACACGA 58.942 37.500 0.00 0.00 0.00 4.35
3206 4027 3.120321 AGGTTGCAGAAATACACGACA 57.880 42.857 0.00 0.00 0.00 4.35
3229 4050 0.044855 AGAGCCCCCTGAAGGTGTAT 59.955 55.000 0.00 0.00 0.00 2.29
3253 4074 3.050275 GTTGCTGCCCGAGACACC 61.050 66.667 0.00 0.00 0.00 4.16
3310 4131 4.020839 CCAAGAAATGGCTGTCAAATCCTT 60.021 41.667 0.00 0.00 43.80 3.36
3319 4140 4.158394 GGCTGTCAAATCCTTAATCTGCAA 59.842 41.667 0.00 0.00 0.00 4.08
3330 4151 5.997746 TCCTTAATCTGCAAGTATGTATGGC 59.002 40.000 0.00 0.00 33.76 4.40
3403 4224 1.531578 CTGATGATGCTTGCAGGATCG 59.468 52.381 0.00 0.00 44.79 3.69
3489 4310 0.169009 GCTGAAACTAAAGGGCGCAG 59.831 55.000 10.83 0.00 0.00 5.18
3524 4345 5.591877 GGACAGGATATTGATCAGCAAAGTT 59.408 40.000 0.00 0.00 40.48 2.66
3527 4348 7.989826 ACAGGATATTGATCAGCAAAGTTTAC 58.010 34.615 0.00 0.00 40.48 2.01
3528 4349 7.611467 ACAGGATATTGATCAGCAAAGTTTACA 59.389 33.333 0.00 0.00 40.48 2.41
3531 4352 7.702348 GGATATTGATCAGCAAAGTTTACAACC 59.298 37.037 0.00 0.00 40.48 3.77
3660 4481 3.009033 TCGGATTGTTGAAAGGGACTCAT 59.991 43.478 0.00 0.00 38.49 2.90
3662 4483 4.335416 GGATTGTTGAAAGGGACTCATCA 58.665 43.478 0.00 0.00 38.49 3.07
3714 4535 3.782244 CGCTGCCTCACGAGCAAC 61.782 66.667 0.00 0.00 40.35 4.17
3758 4579 2.543430 CACAAAAGGTGGAAAAATGCCG 59.457 45.455 0.00 0.00 44.04 5.69
4012 4833 3.411446 CTTGTCCATTGCCTGTAGACAA 58.589 45.455 0.00 0.00 43.23 3.18
4019 4840 4.418392 CATTGCCTGTAGACAAGATTTGC 58.582 43.478 0.00 0.00 0.00 3.68
4040 4861 3.251972 GCTAGGAGATGGCTATGTTTTGC 59.748 47.826 0.00 0.00 31.46 3.68
4100 4921 2.175202 TGTGTGGAAAGTTGGTGCTTT 58.825 42.857 0.00 0.00 40.94 3.51
4172 4994 5.633601 TCAACGTCTTCATCAACTACACATC 59.366 40.000 0.00 0.00 0.00 3.06
4205 5027 4.245660 TGCGTGAAAAACAAACCAATTCA 58.754 34.783 0.00 0.00 0.00 2.57
4209 5031 6.410038 CGTGAAAAACAAACCAATTCATGTC 58.590 36.000 0.00 0.00 34.11 3.06
4247 5069 3.428746 AGCACACATAAAACAAACGCA 57.571 38.095 0.00 0.00 0.00 5.24
4271 5093 6.940298 CAGTCTGAAATTGTTAGGGGAGTTAA 59.060 38.462 0.00 0.00 0.00 2.01
4272 5094 7.611855 CAGTCTGAAATTGTTAGGGGAGTTAAT 59.388 37.037 0.00 0.00 0.00 1.40
4273 5095 8.170730 AGTCTGAAATTGTTAGGGGAGTTAATT 58.829 33.333 0.00 0.00 0.00 1.40
4274 5096 9.457436 GTCTGAAATTGTTAGGGGAGTTAATTA 57.543 33.333 0.00 0.00 0.00 1.40
4424 5254 3.979497 CAAACCTTCCCGGGGCCT 61.979 66.667 23.50 0.00 36.97 5.19
4489 5319 1.801302 TTCCGTCCCCAGTCTCTCCT 61.801 60.000 0.00 0.00 0.00 3.69
4508 5338 1.881252 GACGTTGCTGGTGACACGT 60.881 57.895 0.00 0.00 35.60 4.49
4596 5427 0.749649 AGGATGACCAGCGATCTCAC 59.250 55.000 0.00 0.00 38.94 3.51
4597 5428 0.249657 GGATGACCAGCGATCTCACC 60.250 60.000 0.00 0.00 35.97 4.02
4600 5431 1.142748 GACCAGCGATCTCACCAGG 59.857 63.158 0.00 0.00 0.00 4.45
4601 5432 1.608717 GACCAGCGATCTCACCAGGT 61.609 60.000 0.00 0.00 0.00 4.00
4602 5433 1.153489 CCAGCGATCTCACCAGGTG 60.153 63.158 14.19 14.19 34.45 4.00
4603 5434 1.593787 CAGCGATCTCACCAGGTGT 59.406 57.895 19.65 0.00 34.79 4.16
4604 5435 0.036952 CAGCGATCTCACCAGGTGTT 60.037 55.000 19.65 5.85 34.79 3.32
4605 5436 1.204704 CAGCGATCTCACCAGGTGTTA 59.795 52.381 19.65 9.14 34.79 2.41
4606 5437 1.899814 AGCGATCTCACCAGGTGTTAA 59.100 47.619 19.65 6.63 34.79 2.01
4636 5467 3.083349 AGCATCTACAGCCGGGCA 61.083 61.111 23.09 0.00 0.00 5.36
4638 5469 2.903357 CATCTACAGCCGGGCACT 59.097 61.111 23.09 7.78 0.00 4.40
4649 5480 2.597510 GGGCACTTCAAACCCGCT 60.598 61.111 0.00 0.00 32.92 5.52
4651 5482 1.739667 GGCACTTCAAACCCGCTTT 59.260 52.632 0.00 0.00 0.00 3.51
4657 5488 3.434299 CACTTCAAACCCGCTTTATACGT 59.566 43.478 0.00 0.00 0.00 3.57
4660 5491 1.325338 CAAACCCGCTTTATACGTCCG 59.675 52.381 0.00 0.00 0.00 4.79
4667 5498 2.704342 CTTTATACGTCCGGGCGGGG 62.704 65.000 34.31 11.51 36.01 5.73
4680 5511 2.738521 CGGGGCGTTCAGTCACTG 60.739 66.667 0.00 0.00 0.00 3.66
4681 5512 3.050275 GGGGCGTTCAGTCACTGC 61.050 66.667 0.00 0.00 0.00 4.40
4682 5513 3.050275 GGGCGTTCAGTCACTGCC 61.050 66.667 0.00 0.00 44.98 4.85
4684 5515 3.414700 GCGTTCAGTCACTGCCCG 61.415 66.667 0.00 5.75 0.00 6.13
4685 5516 2.338620 CGTTCAGTCACTGCCCGA 59.661 61.111 9.58 0.00 0.00 5.14
4688 5519 0.037326 GTTCAGTCACTGCCCGATCA 60.037 55.000 0.00 0.00 0.00 2.92
4689 5520 0.904649 TTCAGTCACTGCCCGATCAT 59.095 50.000 0.00 0.00 0.00 2.45
4691 5522 2.319844 TCAGTCACTGCCCGATCATAT 58.680 47.619 0.00 0.00 0.00 1.78
4697 5529 5.702670 AGTCACTGCCCGATCATATATTTTG 59.297 40.000 0.00 0.00 0.00 2.44
4699 5531 5.700832 TCACTGCCCGATCATATATTTTGAC 59.299 40.000 0.00 0.00 0.00 3.18
4701 5533 4.331968 TGCCCGATCATATATTTTGACCC 58.668 43.478 0.00 0.00 0.00 4.46
4705 5537 5.643777 CCCGATCATATATTTTGACCCAGAC 59.356 44.000 0.00 0.00 0.00 3.51
4731 5563 3.423154 CAAACGGCCCTCAGACGC 61.423 66.667 0.00 0.00 0.00 5.19
4753 5585 2.202987 GCTGACTGGCATCCCTCG 60.203 66.667 0.00 0.00 0.00 4.63
4760 5592 0.979665 CTGGCATCCCTCGTATCCAT 59.020 55.000 0.00 0.00 0.00 3.41
4768 5600 2.371841 TCCCTCGTATCCATCCCAAATG 59.628 50.000 0.00 0.00 0.00 2.32
4769 5601 2.553028 CCCTCGTATCCATCCCAAATGG 60.553 54.545 0.00 0.00 40.48 3.16
4782 5614 1.413118 CAAATGGGGTGGATAAGGGC 58.587 55.000 0.00 0.00 0.00 5.19
4783 5615 1.014804 AAATGGGGTGGATAAGGGCA 58.985 50.000 0.00 0.00 0.00 5.36
4785 5617 1.363530 ATGGGGTGGATAAGGGCAGG 61.364 60.000 0.00 0.00 0.00 4.85
4786 5618 2.195956 GGGTGGATAAGGGCAGGC 59.804 66.667 0.00 0.00 0.00 4.85
4788 5620 2.689691 GGTGGATAAGGGCAGGCCA 61.690 63.158 16.94 0.00 37.98 5.36
4789 5621 1.453928 GTGGATAAGGGCAGGCCAC 60.454 63.158 16.94 0.00 41.77 5.01
4792 5624 4.506255 ATAAGGGCAGGCCACGGC 62.506 66.667 16.94 8.04 37.98 5.68
4812 5644 3.376078 TGGCCTACCACGTCGGAC 61.376 66.667 3.32 0.00 42.67 4.79
4817 5649 4.659172 TACCACGTCGGACCCGGT 62.659 66.667 17.33 17.33 40.25 5.28
4864 5696 0.105194 TATTCCTCCCCATCCGCTCA 60.105 55.000 0.00 0.00 0.00 4.26
4865 5697 1.700042 ATTCCTCCCCATCCGCTCAC 61.700 60.000 0.00 0.00 0.00 3.51
4868 5700 4.770362 TCCCCATCCGCTCACCGA 62.770 66.667 0.00 0.00 40.02 4.69
4875 5707 0.035439 ATCCGCTCACCGAACCAAAT 60.035 50.000 0.00 0.00 40.02 2.32
4897 5729 1.205893 CTAGCCACTTCACTCCACTCC 59.794 57.143 0.00 0.00 0.00 3.85
4921 5753 3.470888 CTACCCTCCGCCACCCAG 61.471 72.222 0.00 0.00 0.00 4.45
4931 5763 3.775654 CCACCCAGGCTCGTCTCC 61.776 72.222 0.00 0.00 0.00 3.71
4932 5764 4.135153 CACCCAGGCTCGTCTCCG 62.135 72.222 0.00 0.00 0.00 4.63
4940 5772 4.514577 CTCGTCTCCGGCGCCATT 62.515 66.667 28.98 0.00 33.95 3.16
4941 5773 4.508128 TCGTCTCCGGCGCCATTC 62.508 66.667 28.98 10.47 33.95 2.67
4953 5785 4.469883 CCATTCGGCCATCTCCAG 57.530 61.111 2.24 0.00 0.00 3.86
4954 5786 1.895707 CCATTCGGCCATCTCCAGC 60.896 63.158 2.24 0.00 0.00 4.85
4955 5787 1.153107 CATTCGGCCATCTCCAGCA 60.153 57.895 2.24 0.00 0.00 4.41
4956 5788 0.536687 CATTCGGCCATCTCCAGCAT 60.537 55.000 2.24 0.00 0.00 3.79
4957 5789 0.536687 ATTCGGCCATCTCCAGCATG 60.537 55.000 2.24 0.00 0.00 4.06
4969 5801 3.963687 CAGCATGGCGGACAGCTGA 62.964 63.158 23.35 0.00 45.77 4.26
4975 5807 4.803426 GCGGACAGCTGACCCGAG 62.803 72.222 37.10 23.24 45.58 4.63
4976 5808 3.374402 CGGACAGCTGACCCGAGT 61.374 66.667 32.88 8.30 45.58 4.18
4977 5809 2.574399 GGACAGCTGACCCGAGTC 59.426 66.667 23.35 5.09 43.83 3.36
4978 5810 2.574399 GACAGCTGACCCGAGTCC 59.426 66.667 23.35 0.00 42.81 3.85
4979 5811 1.979693 GACAGCTGACCCGAGTCCT 60.980 63.158 23.35 0.00 42.81 3.85
4980 5812 1.534235 ACAGCTGACCCGAGTCCTT 60.534 57.895 23.35 0.00 42.81 3.36
4981 5813 1.216710 CAGCTGACCCGAGTCCTTC 59.783 63.158 8.42 0.00 42.81 3.46
4982 5814 1.228894 AGCTGACCCGAGTCCTTCA 60.229 57.895 0.00 0.00 42.81 3.02
4983 5815 1.079750 GCTGACCCGAGTCCTTCAC 60.080 63.158 0.00 0.00 42.81 3.18
4984 5816 1.592223 CTGACCCGAGTCCTTCACC 59.408 63.158 0.00 0.00 42.81 4.02
4985 5817 0.900647 CTGACCCGAGTCCTTCACCT 60.901 60.000 0.00 0.00 42.81 4.00
4986 5818 0.471211 TGACCCGAGTCCTTCACCTT 60.471 55.000 0.00 0.00 42.81 3.50
4987 5819 0.246910 GACCCGAGTCCTTCACCTTC 59.753 60.000 0.00 0.00 37.00 3.46
4988 5820 0.471211 ACCCGAGTCCTTCACCTTCA 60.471 55.000 0.00 0.00 0.00 3.02
4989 5821 0.247736 CCCGAGTCCTTCACCTTCAG 59.752 60.000 0.00 0.00 0.00 3.02
4990 5822 1.257743 CCGAGTCCTTCACCTTCAGA 58.742 55.000 0.00 0.00 0.00 3.27
4991 5823 1.827969 CCGAGTCCTTCACCTTCAGAT 59.172 52.381 0.00 0.00 0.00 2.90
4992 5824 2.159170 CCGAGTCCTTCACCTTCAGATC 60.159 54.545 0.00 0.00 0.00 2.75
4993 5825 2.159170 CGAGTCCTTCACCTTCAGATCC 60.159 54.545 0.00 0.00 0.00 3.36
4994 5826 1.827969 AGTCCTTCACCTTCAGATCCG 59.172 52.381 0.00 0.00 0.00 4.18
4995 5827 1.550976 GTCCTTCACCTTCAGATCCGT 59.449 52.381 0.00 0.00 0.00 4.69
4996 5828 1.825474 TCCTTCACCTTCAGATCCGTC 59.175 52.381 0.00 0.00 0.00 4.79
4997 5829 1.469940 CCTTCACCTTCAGATCCGTCG 60.470 57.143 0.00 0.00 0.00 5.12
4998 5830 1.472878 CTTCACCTTCAGATCCGTCGA 59.527 52.381 0.00 0.00 0.00 4.20
4999 5831 0.809385 TCACCTTCAGATCCGTCGAC 59.191 55.000 5.18 5.18 0.00 4.20
5000 5832 0.811915 CACCTTCAGATCCGTCGACT 59.188 55.000 14.70 0.00 0.00 4.18
5001 5833 1.096416 ACCTTCAGATCCGTCGACTC 58.904 55.000 14.70 4.49 0.00 3.36
5002 5834 0.382515 CCTTCAGATCCGTCGACTCC 59.617 60.000 14.70 0.00 0.00 3.85
5003 5835 0.028242 CTTCAGATCCGTCGACTCCG 59.972 60.000 14.70 0.00 37.07 4.63
5004 5836 0.392060 TTCAGATCCGTCGACTCCGA 60.392 55.000 14.70 6.65 43.35 4.55
5013 5845 2.490165 TCGACTCCGAACTCATCCC 58.510 57.895 0.00 0.00 42.51 3.85
5014 5846 0.323087 TCGACTCCGAACTCATCCCA 60.323 55.000 0.00 0.00 42.51 4.37
5015 5847 0.179134 CGACTCCGAACTCATCCCAC 60.179 60.000 0.00 0.00 38.22 4.61
5016 5848 0.179134 GACTCCGAACTCATCCCACG 60.179 60.000 0.00 0.00 0.00 4.94
5017 5849 1.519455 CTCCGAACTCATCCCACGC 60.519 63.158 0.00 0.00 0.00 5.34
5018 5850 2.225791 CTCCGAACTCATCCCACGCA 62.226 60.000 0.00 0.00 0.00 5.24
5019 5851 1.375396 CCGAACTCATCCCACGCAA 60.375 57.895 0.00 0.00 0.00 4.85
5020 5852 1.635663 CCGAACTCATCCCACGCAAC 61.636 60.000 0.00 0.00 0.00 4.17
5021 5853 1.635663 CGAACTCATCCCACGCAACC 61.636 60.000 0.00 0.00 0.00 3.77
5022 5854 1.303317 AACTCATCCCACGCAACCC 60.303 57.895 0.00 0.00 0.00 4.11
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.997129 AGGACCTAAAAATTGCCATGTTTTG 59.003 36.000 0.00 0.00 0.00 2.44
1 2 6.186420 AGGACCTAAAAATTGCCATGTTTT 57.814 33.333 0.00 0.00 0.00 2.43
3 4 5.823861 AAGGACCTAAAAATTGCCATGTT 57.176 34.783 0.00 0.00 0.00 2.71
4 5 5.823861 AAAGGACCTAAAAATTGCCATGT 57.176 34.783 0.00 0.00 0.00 3.21
5 6 6.229733 TGAAAAGGACCTAAAAATTGCCATG 58.770 36.000 0.00 0.00 0.00 3.66
6 7 6.432403 TGAAAAGGACCTAAAAATTGCCAT 57.568 33.333 0.00 0.00 0.00 4.40
7 8 5.878406 TGAAAAGGACCTAAAAATTGCCA 57.122 34.783 0.00 0.00 0.00 4.92
8 9 6.348458 GCATTGAAAAGGACCTAAAAATTGCC 60.348 38.462 0.00 0.00 0.00 4.52
9 10 6.348458 GGCATTGAAAAGGACCTAAAAATTGC 60.348 38.462 0.00 1.10 21.30 3.56
10 11 7.132694 GGCATTGAAAAGGACCTAAAAATTG 57.867 36.000 0.00 0.00 21.30 2.32
49 50 7.344093 TGCCATGAATAAGTGATAAATTTCCCA 59.656 33.333 0.00 0.00 0.00 4.37
50 51 7.725251 TGCCATGAATAAGTGATAAATTTCCC 58.275 34.615 0.00 0.00 0.00 3.97
216 255 8.570470 TGTCCCCTCTTAATAATAAAAATCCCA 58.430 33.333 0.00 0.00 0.00 4.37
263 304 0.105246 TTTCCCATGGCCCAAACACT 60.105 50.000 6.09 0.00 0.00 3.55
264 305 0.983467 ATTTCCCATGGCCCAAACAC 59.017 50.000 6.09 0.00 0.00 3.32
307 350 9.889128 AAAATGCCATGCTGTACTTTATAAAAT 57.111 25.926 0.00 0.00 0.00 1.82
336 379 9.562408 TTACAACTGACATGGTCTGTTTTATAA 57.438 29.630 15.89 12.53 46.90 0.98
339 382 7.554835 AGTTTACAACTGACATGGTCTGTTTTA 59.445 33.333 15.89 12.48 46.90 1.52
343 386 5.036117 AGTTTACAACTGACATGGTCTGT 57.964 39.130 0.00 3.46 44.35 3.41
344 387 8.948631 ATATAGTTTACAACTGACATGGTCTG 57.051 34.615 0.00 2.27 42.84 3.51
416 460 4.745172 GCCCAAATAGCAGTTTTTCCCAAA 60.745 41.667 0.00 0.00 0.00 3.28
418 462 2.301583 GCCCAAATAGCAGTTTTTCCCA 59.698 45.455 0.00 0.00 0.00 4.37
419 463 2.354704 GGCCCAAATAGCAGTTTTTCCC 60.355 50.000 0.00 0.00 0.00 3.97
420 464 2.567169 AGGCCCAAATAGCAGTTTTTCC 59.433 45.455 0.00 0.00 0.00 3.13
444 488 2.159382 AGCACGTAGGAAAACAATGGG 58.841 47.619 0.00 0.00 0.00 4.00
450 494 4.035208 CCATTATGGAGCACGTAGGAAAAC 59.965 45.833 5.05 0.00 40.96 2.43
468 512 1.415672 GGGTCGATCCTGGCCCATTA 61.416 60.000 7.71 0.00 40.76 1.90
488 532 0.321830 GTTCCCATCGACCCGGAAAA 60.322 55.000 0.73 0.00 37.41 2.29
490 534 1.610554 GAGTTCCCATCGACCCGGAA 61.611 60.000 0.73 5.76 33.24 4.30
491 535 2.038329 AGTTCCCATCGACCCGGA 59.962 61.111 0.73 0.00 0.00 5.14
492 536 1.614241 AAGAGTTCCCATCGACCCGG 61.614 60.000 0.00 0.00 0.00 5.73
494 538 1.134670 CAGAAGAGTTCCCATCGACCC 60.135 57.143 0.00 0.00 0.00 4.46
499 543 0.537188 TCGCCAGAAGAGTTCCCATC 59.463 55.000 0.00 0.00 0.00 3.51
506 550 0.309302 CGATCGATCGCCAGAAGAGT 59.691 55.000 32.34 0.00 43.84 3.24
584 647 1.604308 CATCACACAAGGGCAGCCA 60.604 57.895 15.19 0.00 0.00 4.75
585 648 2.345760 CCATCACACAAGGGCAGCC 61.346 63.158 1.26 1.26 0.00 4.85
588 651 0.034186 GGATCCATCACACAAGGGCA 60.034 55.000 6.95 0.00 0.00 5.36
622 685 3.148279 GCTCCACCTCGGATCGGT 61.148 66.667 0.00 0.00 45.19 4.69
624 687 4.271816 CGGCTCCACCTCGGATCG 62.272 72.222 0.00 0.00 45.19 3.69
633 696 1.300233 CGCTTCCTATCGGCTCCAC 60.300 63.158 0.00 0.00 0.00 4.02
663 738 1.373059 GCTTCCCTGATCCGATCCC 59.627 63.158 5.91 0.00 0.00 3.85
682 757 0.846427 TCCTGAGGGGAAGGCATTGT 60.846 55.000 0.00 0.00 41.91 2.71
722 797 4.621269 TCCGGATAGGAGCCCTTC 57.379 61.111 0.00 0.00 45.98 3.46
740 815 1.117749 CCCATGATCAGCTCTCCGGA 61.118 60.000 2.93 2.93 0.00 5.14
761 836 6.721571 TGATTCCTAATCGAAGTCAAACAC 57.278 37.500 0.00 0.00 40.84 3.32
766 841 4.081862 ACGGTTGATTCCTAATCGAAGTCA 60.082 41.667 0.00 0.00 40.84 3.41
775 850 1.404986 CGCCTCACGGTTGATTCCTAA 60.405 52.381 0.00 0.00 38.44 2.69
830 1038 0.625849 ATGATCCCCTTGCGTTTCCT 59.374 50.000 0.00 0.00 0.00 3.36
856 1064 3.127533 GAGATGCCCGTGCGCTTT 61.128 61.111 9.73 0.00 41.78 3.51
904 1112 0.537828 TACCCTGGTTTTCAACGCCC 60.538 55.000 0.00 0.00 0.00 6.13
990 1320 2.176045 TCTGCCACCATCGAACTAGAA 58.824 47.619 0.00 0.00 0.00 2.10
993 1323 3.627395 AATTCTGCCACCATCGAACTA 57.373 42.857 0.00 0.00 0.00 2.24
1008 1338 0.404040 TTCCCCGGAGTGCAAATTCT 59.596 50.000 0.73 0.00 0.00 2.40
1020 1350 1.204704 GCCATCTTTTCTTTTCCCCGG 59.795 52.381 0.00 0.00 0.00 5.73
1023 1353 2.167662 TCCGCCATCTTTTCTTTTCCC 58.832 47.619 0.00 0.00 0.00 3.97
1025 1355 4.229876 CTGTTCCGCCATCTTTTCTTTTC 58.770 43.478 0.00 0.00 0.00 2.29
1037 1367 0.321671 CTTCTCTTCCTGTTCCGCCA 59.678 55.000 0.00 0.00 0.00 5.69
1038 1368 1.021920 GCTTCTCTTCCTGTTCCGCC 61.022 60.000 0.00 0.00 0.00 6.13
1040 1370 0.391793 GGGCTTCTCTTCCTGTTCCG 60.392 60.000 0.00 0.00 0.00 4.30
1082 1412 0.596083 CAGATCACGGATCACCTCGC 60.596 60.000 13.95 0.00 41.12 5.03
1088 1418 1.207089 GTTCCCACAGATCACGGATCA 59.793 52.381 13.95 0.00 41.12 2.92
1108 1438 2.672961 TGCTCGTATCTTGGGAAGTG 57.327 50.000 0.00 0.00 0.00 3.16
1128 1458 0.033109 TGGAGAGAAGGGCGAGATCA 60.033 55.000 0.00 0.00 0.00 2.92
1150 1480 5.049612 CGATACTTGCAGAGATTGATTGCAT 60.050 40.000 0.00 0.00 46.10 3.96
1155 1485 6.534436 GCATATCGATACTTGCAGAGATTGAT 59.466 38.462 20.84 9.98 35.22 2.57
1330 1662 6.183360 CCGACTGCTATTGATTCAGATTTTGT 60.183 38.462 0.00 0.00 0.00 2.83
1352 1684 2.758327 CCTCGACCACCATCCCGA 60.758 66.667 0.00 0.00 0.00 5.14
1466 1885 6.627690 AACGAACTGTAAACACGATCATAG 57.372 37.500 0.00 0.00 0.00 2.23
1468 1887 5.235616 ACAAACGAACTGTAAACACGATCAT 59.764 36.000 0.00 0.00 0.00 2.45
1476 1902 8.885302 AGTAGAAAAACAAACGAACTGTAAAC 57.115 30.769 0.00 0.00 0.00 2.01
1486 1912 6.526674 AGTTTGAGCAAGTAGAAAAACAAACG 59.473 34.615 0.00 0.00 45.40 3.60
1507 1933 4.916983 TGCATAGTGAAAAGTGCAGTTT 57.083 36.364 13.86 13.86 42.13 2.66
1542 1968 6.183361 GGGTTCAGAGGTTATAGAATGGATGT 60.183 42.308 0.00 0.00 0.00 3.06
1544 1970 6.153924 AGGGTTCAGAGGTTATAGAATGGAT 58.846 40.000 0.00 0.00 0.00 3.41
1545 1971 5.538877 AGGGTTCAGAGGTTATAGAATGGA 58.461 41.667 0.00 0.00 0.00 3.41
1546 1972 5.896073 AGGGTTCAGAGGTTATAGAATGG 57.104 43.478 0.00 0.00 0.00 3.16
1547 1973 5.986135 CGAAGGGTTCAGAGGTTATAGAATG 59.014 44.000 0.00 0.00 0.00 2.67
1548 1974 5.661759 ACGAAGGGTTCAGAGGTTATAGAAT 59.338 40.000 0.00 0.00 0.00 2.40
1549 1975 5.021458 ACGAAGGGTTCAGAGGTTATAGAA 58.979 41.667 0.00 0.00 0.00 2.10
1550 1976 4.607239 ACGAAGGGTTCAGAGGTTATAGA 58.393 43.478 0.00 0.00 0.00 1.98
1551 1977 5.340439 AACGAAGGGTTCAGAGGTTATAG 57.660 43.478 0.00 0.00 31.79 1.31
1753 2218 6.367969 GGATCTTTTCGCTAAGTGTAAGACAA 59.632 38.462 0.00 0.00 0.00 3.18
1764 2229 5.483811 TGTGTGTATGGATCTTTTCGCTAA 58.516 37.500 0.00 0.00 0.00 3.09
1788 2253 5.819901 CAGTCAACTCTCTTCCAGACTTTTT 59.180 40.000 0.00 0.00 34.39 1.94
1790 2255 4.651503 TCAGTCAACTCTCTTCCAGACTTT 59.348 41.667 0.00 0.00 34.39 2.66
1793 2258 4.592485 TTCAGTCAACTCTCTTCCAGAC 57.408 45.455 0.00 0.00 0.00 3.51
1794 2259 5.815233 ATTTCAGTCAACTCTCTTCCAGA 57.185 39.130 0.00 0.00 0.00 3.86
1795 2260 7.158021 ACTTATTTCAGTCAACTCTCTTCCAG 58.842 38.462 0.00 0.00 0.00 3.86
1797 2262 7.971183 AACTTATTTCAGTCAACTCTCTTCC 57.029 36.000 0.00 0.00 0.00 3.46
1804 2270 7.444487 GTGTCCCTAAACTTATTTCAGTCAACT 59.556 37.037 0.00 0.00 0.00 3.16
1824 2290 4.208460 CACAATAATATGTCGTCGTGTCCC 59.792 45.833 0.00 0.00 0.00 4.46
1825 2291 4.208460 CCACAATAATATGTCGTCGTGTCC 59.792 45.833 0.00 0.00 0.00 4.02
1827 2293 5.001237 TCCACAATAATATGTCGTCGTGT 57.999 39.130 0.00 0.00 0.00 4.49
1828 2294 5.959652 TTCCACAATAATATGTCGTCGTG 57.040 39.130 0.00 0.00 0.00 4.35
1842 2310 7.178274 TGCTACCTCAACAATAATTTCCACAAT 59.822 33.333 0.00 0.00 0.00 2.71
1872 2340 5.105997 GGAAAACTGTGCAGCTCAATCTAAT 60.106 40.000 0.00 0.00 0.00 1.73
1891 2359 5.336929 CCTGATTTGATGTGATGCAGGAAAA 60.337 40.000 0.00 0.00 43.03 2.29
1922 2390 3.107642 ACACGGTGAAGGTTCAGTAAG 57.892 47.619 16.29 0.00 37.98 2.34
1929 2397 2.438411 TGAACAAACACGGTGAAGGTT 58.562 42.857 16.29 14.21 0.00 3.50
1951 2419 4.258543 GTGATTTTTGGAGGTCGTGGATA 58.741 43.478 0.00 0.00 0.00 2.59
1957 2431 1.399727 GCGTGTGATTTTTGGAGGTCG 60.400 52.381 0.00 0.00 0.00 4.79
2005 2479 2.056223 GCGGGCCTAGGAGTGTGTA 61.056 63.158 14.75 0.00 0.00 2.90
2016 2490 4.660938 GGTTTCAGTGGCGGGCCT 62.661 66.667 11.55 0.00 36.94 5.19
2043 2517 6.985645 TGCTAGACAAAACGTTCCTAAAGTTA 59.014 34.615 0.00 0.00 0.00 2.24
2081 2556 7.770897 AGTAAGATCATGGTTTCACAGGTAATC 59.229 37.037 0.00 0.00 0.00 1.75
2124 2599 6.375455 AGGCTGTTGTATGTAAAAGGATGAAG 59.625 38.462 0.00 0.00 0.00 3.02
2139 2614 6.294361 ACTATTATGTGTGAGGCTGTTGTA 57.706 37.500 0.00 0.00 0.00 2.41
2140 2615 5.165961 ACTATTATGTGTGAGGCTGTTGT 57.834 39.130 0.00 0.00 0.00 3.32
2141 2616 5.755375 CCTACTATTATGTGTGAGGCTGTTG 59.245 44.000 0.00 0.00 0.00 3.33
2142 2617 5.661312 TCCTACTATTATGTGTGAGGCTGTT 59.339 40.000 0.00 0.00 0.00 3.16
2143 2618 5.069251 GTCCTACTATTATGTGTGAGGCTGT 59.931 44.000 0.00 0.00 0.00 4.40
2146 2621 5.793030 AGTCCTACTATTATGTGTGAGGC 57.207 43.478 0.00 0.00 0.00 4.70
2157 2632 7.013464 CGGATGACTGAGTTTAGTCCTACTATT 59.987 40.741 0.00 0.00 45.07 1.73
2159 2634 5.821470 CGGATGACTGAGTTTAGTCCTACTA 59.179 44.000 0.00 0.00 45.07 1.82
2172 2649 1.440893 CTGGGAGCGGATGACTGAG 59.559 63.158 0.00 0.00 0.00 3.35
2188 2665 2.971598 ATTGGACGGTGGCTCCCTG 61.972 63.158 0.00 0.00 0.00 4.45
2192 2669 2.438434 CCCATTGGACGGTGGCTC 60.438 66.667 3.62 0.00 34.08 4.70
2200 2677 2.238521 TGCTCTTTGTTCCCATTGGAC 58.761 47.619 3.62 0.00 41.57 4.02
2206 2683 2.673775 TCCATTGCTCTTTGTTCCCA 57.326 45.000 0.00 0.00 0.00 4.37
2207 2684 2.353109 GCTTCCATTGCTCTTTGTTCCC 60.353 50.000 0.00 0.00 0.00 3.97
2228 2705 5.582689 TGTCATACTGTGTAGTCATCCAG 57.417 43.478 0.00 0.00 38.36 3.86
2274 2755 1.281867 CCACAGGGGCTGATGTTTAGA 59.718 52.381 0.00 0.00 35.18 2.10
2289 2771 2.232208 TGCAGAGTACATCAGTCCACAG 59.768 50.000 0.00 0.00 0.00 3.66
2341 2823 9.889128 TCTCTTTTTCCTTCAAATTCACAAATT 57.111 25.926 0.00 0.00 36.64 1.82
2371 3163 8.577048 ACTGTGAAATTGATTGAGATTGAGAT 57.423 30.769 0.00 0.00 0.00 2.75
2405 3197 6.295292 GGCATGGTGACCTTTCTTTATTTTCT 60.295 38.462 2.11 0.00 0.00 2.52
2415 3207 2.165030 CAGATTGGCATGGTGACCTTTC 59.835 50.000 2.11 0.00 0.00 2.62
2425 3217 6.261603 ACATAATGTACAGTCAGATTGGCATG 59.738 38.462 0.00 0.00 0.00 4.06
2475 3267 9.965824 TTGCTTTTCTGTTCCTTTAATAAAGAG 57.034 29.630 13.87 3.98 41.02 2.85
2501 3295 4.061596 CAGGGTTGTTGTTGTTGTTGTTT 58.938 39.130 0.00 0.00 0.00 2.83
2504 3298 2.992543 CACAGGGTTGTTGTTGTTGTTG 59.007 45.455 0.00 0.00 34.62 3.33
2505 3299 2.028567 CCACAGGGTTGTTGTTGTTGTT 60.029 45.455 0.00 0.00 34.62 2.83
2506 3300 1.548269 CCACAGGGTTGTTGTTGTTGT 59.452 47.619 0.00 0.00 34.62 3.32
2507 3301 2.292103 CCACAGGGTTGTTGTTGTTG 57.708 50.000 0.00 0.00 34.62 3.33
2534 3328 3.181477 CCACATGTTCAGAAAACAAGGCA 60.181 43.478 0.00 0.00 33.42 4.75
2559 3353 4.694339 ACCTGAACAACAAGTAGACTGAC 58.306 43.478 0.00 0.00 0.00 3.51
2591 3385 5.829924 ACCTCAATCAAACAGACACTTCAAT 59.170 36.000 0.00 0.00 0.00 2.57
2594 3388 5.059833 AGACCTCAATCAAACAGACACTTC 58.940 41.667 0.00 0.00 0.00 3.01
2600 3394 8.198109 GCTATAGTTAGACCTCAATCAAACAGA 58.802 37.037 0.84 0.00 0.00 3.41
2607 3401 8.417884 AGTTTCAGCTATAGTTAGACCTCAATC 58.582 37.037 0.84 0.00 0.00 2.67
2611 3405 9.738832 CTTAAGTTTCAGCTATAGTTAGACCTC 57.261 37.037 0.84 0.00 0.00 3.85
2612 3406 9.476928 TCTTAAGTTTCAGCTATAGTTAGACCT 57.523 33.333 1.63 0.00 0.00 3.85
2635 3429 8.100791 TGCTACCAAATGTAAACTAGTGATCTT 58.899 33.333 0.00 0.00 0.00 2.40
2639 3433 6.765403 ACTGCTACCAAATGTAAACTAGTGA 58.235 36.000 0.00 0.00 0.00 3.41
2640 3434 8.542497 TTACTGCTACCAAATGTAAACTAGTG 57.458 34.615 0.00 0.00 0.00 2.74
2641 3435 9.379791 GATTACTGCTACCAAATGTAAACTAGT 57.620 33.333 0.00 0.00 0.00 2.57
2642 3436 9.378551 TGATTACTGCTACCAAATGTAAACTAG 57.621 33.333 0.00 0.00 0.00 2.57
2681 3478 6.481954 ACTTTTCAGCTAGGAAAATACACG 57.518 37.500 11.21 4.07 43.56 4.49
2715 3512 9.890629 ATCTACAATGCTATTTACAAGTTCTCA 57.109 29.630 0.00 0.00 0.00 3.27
2753 3553 7.921786 TCACCTTATTTAAGTTCTCACATGG 57.078 36.000 0.00 0.00 0.00 3.66
2775 3575 4.565444 CCCGGCATTTGTCCTATATCATCA 60.565 45.833 0.00 0.00 0.00 3.07
2836 3636 8.421784 CCTATGTGGAATGTAGAGCTTTTAGTA 58.578 37.037 0.00 0.00 38.35 1.82
2847 3647 7.103641 ACTTGTGTTACCTATGTGGAATGTAG 58.896 38.462 0.00 0.00 39.71 2.74
2851 3651 8.927675 TTAAACTTGTGTTACCTATGTGGAAT 57.072 30.769 0.00 0.00 35.76 3.01
2928 3728 2.433604 TGAAAAGTGCAATGGGAGCAAA 59.566 40.909 0.00 0.00 44.64 3.68
2964 3784 8.413229 CCACCCCTAATTATAGAACAAATGTTG 58.587 37.037 3.05 0.00 38.56 3.33
2988 3808 4.953579 GGCTACATACAAAGGAAAATCCCA 59.046 41.667 0.00 0.00 37.19 4.37
3018 3838 6.194235 TGTGATCCCCTTTGCATTAAGTTAT 58.806 36.000 0.00 0.00 0.00 1.89
3038 3858 4.641396 ACAGCTACAAACTAAGCATGTGA 58.359 39.130 0.00 0.00 41.32 3.58
3040 3860 7.687941 ATTAACAGCTACAAACTAAGCATGT 57.312 32.000 0.00 0.00 41.32 3.21
3155 3976 0.333993 ATCTGCAAGGTGCTCCCAAT 59.666 50.000 0.00 0.00 45.31 3.16
3181 4002 5.049954 GTCGTGTATTTCTGCAACCTTAACA 60.050 40.000 0.00 0.00 0.00 2.41
3204 4025 0.622665 CTTCAGGGGGCTCTCAATGT 59.377 55.000 0.00 0.00 0.00 2.71
3206 4027 0.551131 ACCTTCAGGGGGCTCTCAAT 60.551 55.000 0.00 0.00 40.27 2.57
3253 4074 1.007336 GGTTACGACTGCTGTCCACG 61.007 60.000 17.01 9.56 39.94 4.94
3310 4131 8.374743 TGAATAGCCATACATACTTGCAGATTA 58.625 33.333 0.00 0.00 0.00 1.75
3358 4179 5.178061 TGTCATGAACTAATCAACAGCGAT 58.822 37.500 0.00 0.00 42.54 4.58
3403 4224 2.747989 GGGCCAGTTAAGTGTAGAAAGC 59.252 50.000 4.39 4.30 0.00 3.51
3489 4310 1.617947 ATCCTGTCCTCGGACTTGGC 61.618 60.000 16.41 0.00 44.80 4.52
3531 4352 5.768164 AGGTACCTAAACTTTCACCATTGTG 59.232 40.000 14.41 0.00 44.18 3.33
3545 4366 2.880890 GCCGACGAGATAGGTACCTAAA 59.119 50.000 25.25 6.25 31.73 1.85
3662 4483 2.275380 GCCACCATGCGGAAAAGGT 61.275 57.895 3.67 0.00 35.59 3.50
3714 4535 1.755179 AGCATCACAATTTCCTCGGG 58.245 50.000 0.00 0.00 0.00 5.14
3758 4579 0.879090 GACAACGGTGTTTCCCCATC 59.121 55.000 7.93 0.00 38.41 3.51
3863 4684 2.623418 AGAGGACATGACCACCAGTA 57.377 50.000 16.63 0.00 0.00 2.74
3869 4690 1.347707 GGTGTGAAGAGGACATGACCA 59.652 52.381 16.63 0.00 0.00 4.02
4012 4833 4.596643 ACATAGCCATCTCCTAGCAAATCT 59.403 41.667 0.00 0.00 0.00 2.40
4019 4840 4.454678 TGCAAAACATAGCCATCTCCTAG 58.545 43.478 0.00 0.00 0.00 3.02
4040 4861 5.946298 AGTCAAAGTGCACACATAATCATG 58.054 37.500 21.04 4.30 38.21 3.07
4172 4994 1.522668 TTTCACGCAAGACAGGATGG 58.477 50.000 0.00 0.00 41.10 3.51
4205 5027 7.756722 GTGCTATGAATACTTTGCTTTTGACAT 59.243 33.333 0.00 0.00 0.00 3.06
4209 5031 6.862608 TGTGTGCTATGAATACTTTGCTTTTG 59.137 34.615 0.00 0.00 0.00 2.44
4247 5069 5.584551 AACTCCCCTAACAATTTCAGACT 57.415 39.130 0.00 0.00 0.00 3.24
4271 5093 7.501559 ACGTACCACAGATATACAGTCACTAAT 59.498 37.037 0.00 0.00 0.00 1.73
4272 5094 6.825213 ACGTACCACAGATATACAGTCACTAA 59.175 38.462 0.00 0.00 0.00 2.24
4273 5095 6.351711 ACGTACCACAGATATACAGTCACTA 58.648 40.000 0.00 0.00 0.00 2.74
4274 5096 5.191426 ACGTACCACAGATATACAGTCACT 58.809 41.667 0.00 0.00 0.00 3.41
4489 5319 1.880796 CGTGTCACCAGCAACGTCA 60.881 57.895 0.00 0.00 0.00 4.35
4508 5338 1.744639 GCAGGGCTCATCTCATCGA 59.255 57.895 0.00 0.00 0.00 3.59
4577 5408 0.749649 GTGAGATCGCTGGTCATCCT 59.250 55.000 0.00 0.00 34.23 3.24
4588 5419 3.594603 ACTTAACACCTGGTGAGATCG 57.405 47.619 32.30 17.34 36.96 3.69
4596 5427 5.741011 TCTTAAGGCATACTTAACACCTGG 58.259 41.667 1.85 0.00 44.55 4.45
4597 5428 5.294552 GCTCTTAAGGCATACTTAACACCTG 59.705 44.000 1.85 0.00 44.55 4.00
4600 5431 6.927294 ATGCTCTTAAGGCATACTTAACAC 57.073 37.500 22.30 0.00 46.81 3.32
4627 5458 2.644992 GTTTGAAGTGCCCGGCTG 59.355 61.111 11.61 0.00 0.00 4.85
4633 5464 0.955905 TAAAGCGGGTTTGAAGTGCC 59.044 50.000 14.94 0.00 0.00 5.01
4636 5467 3.667360 ACGTATAAAGCGGGTTTGAAGT 58.333 40.909 14.94 8.37 0.00 3.01
4638 5469 3.002102 GGACGTATAAAGCGGGTTTGAA 58.998 45.455 14.94 0.55 0.00 2.69
4648 5479 1.300388 CCCGCCCGGACGTATAAAG 60.300 63.158 9.94 0.00 37.50 1.85
4649 5480 2.795110 CCCCGCCCGGACGTATAAA 61.795 63.158 9.94 0.00 37.50 1.40
4667 5498 3.414700 CGGGCAGTGACTGAACGC 61.415 66.667 18.18 6.98 32.44 4.84
4669 5500 0.037326 TGATCGGGCAGTGACTGAAC 60.037 55.000 18.18 10.16 32.44 3.18
4670 5501 0.904649 ATGATCGGGCAGTGACTGAA 59.095 50.000 18.18 0.00 32.44 3.02
4671 5502 1.775385 TATGATCGGGCAGTGACTGA 58.225 50.000 18.18 10.71 32.44 3.41
4673 5504 5.489792 AAATATATGATCGGGCAGTGACT 57.510 39.130 0.00 0.00 0.00 3.41
4680 5511 4.331968 TGGGTCAAAATATATGATCGGGC 58.668 43.478 0.00 0.00 0.00 6.13
4681 5512 5.643777 GTCTGGGTCAAAATATATGATCGGG 59.356 44.000 0.00 0.00 0.00 5.14
4682 5513 5.348724 CGTCTGGGTCAAAATATATGATCGG 59.651 44.000 0.00 0.00 0.00 4.18
4684 5515 6.727824 CCGTCTGGGTCAAAATATATGATC 57.272 41.667 0.00 0.00 0.00 2.92
4711 5543 1.671742 GTCTGAGGGCCGTTTGAGA 59.328 57.895 0.00 0.00 0.00 3.27
4731 5563 4.864334 GATGCCAGTCAGCCCGGG 62.864 72.222 19.09 19.09 0.00 5.73
4742 5574 0.976641 GATGGATACGAGGGATGCCA 59.023 55.000 5.86 0.00 42.51 4.92
4743 5575 0.250513 GGATGGATACGAGGGATGCC 59.749 60.000 0.00 0.00 42.51 4.40
4747 5579 2.184088 TTTGGGATGGATACGAGGGA 57.816 50.000 0.00 0.00 42.51 4.20
4768 5600 2.927056 CCTGCCCTTATCCACCCC 59.073 66.667 0.00 0.00 0.00 4.95
4769 5601 2.195956 GCCTGCCCTTATCCACCC 59.804 66.667 0.00 0.00 0.00 4.61
4772 5604 3.006677 GTGGCCTGCCCTTATCCA 58.993 61.111 3.32 0.00 34.56 3.41
4773 5605 2.203209 CGTGGCCTGCCCTTATCC 60.203 66.667 3.32 0.00 34.56 2.59
4774 5606 2.203209 CCGTGGCCTGCCCTTATC 60.203 66.667 3.32 0.00 34.56 1.75
4775 5607 4.506255 GCCGTGGCCTGCCCTTAT 62.506 66.667 3.32 0.00 34.56 1.73
4795 5627 3.376078 GTCCGACGTGGTAGGCCA 61.376 66.667 5.01 0.00 43.73 5.36
4797 5629 4.139234 GGGTCCGACGTGGTAGGC 62.139 72.222 0.00 0.00 39.52 3.93
4800 5632 4.659172 ACCGGGTCCGACGTGGTA 62.659 66.667 11.39 0.00 42.83 3.25
4864 5696 0.988832 TGGCTAGGATTTGGTTCGGT 59.011 50.000 0.00 0.00 0.00 4.69
4865 5697 1.065418 AGTGGCTAGGATTTGGTTCGG 60.065 52.381 0.00 0.00 0.00 4.30
4868 5700 3.074538 AGTGAAGTGGCTAGGATTTGGTT 59.925 43.478 0.00 0.00 0.00 3.67
4875 5707 1.203187 AGTGGAGTGAAGTGGCTAGGA 60.203 52.381 0.00 0.00 0.00 2.94
4897 5729 2.808206 GGCGGAGGGTAGTGGATGG 61.808 68.421 0.00 0.00 0.00 3.51
4936 5768 1.895707 GCTGGAGATGGCCGAATGG 60.896 63.158 0.00 0.00 38.77 3.16
4937 5769 0.536687 ATGCTGGAGATGGCCGAATG 60.537 55.000 0.00 0.00 0.00 2.67
4938 5770 0.536687 CATGCTGGAGATGGCCGAAT 60.537 55.000 0.00 0.00 0.00 3.34
4939 5771 1.153107 CATGCTGGAGATGGCCGAA 60.153 57.895 0.00 0.00 0.00 4.30
4940 5772 2.507452 CATGCTGGAGATGGCCGA 59.493 61.111 0.00 0.00 0.00 5.54
4941 5773 2.593725 CCATGCTGGAGATGGCCG 60.594 66.667 0.00 0.00 40.96 6.13
4944 5776 2.593725 CCGCCATGCTGGAGATGG 60.594 66.667 6.40 1.25 39.92 3.51
4945 5777 1.890979 GTCCGCCATGCTGGAGATG 60.891 63.158 4.52 0.00 39.92 2.90
4946 5778 2.321263 CTGTCCGCCATGCTGGAGAT 62.321 60.000 4.52 0.00 39.92 2.75
4947 5779 3.002583 TGTCCGCCATGCTGGAGA 61.003 61.111 4.52 1.23 39.92 3.71
4948 5780 2.513204 CTGTCCGCCATGCTGGAG 60.513 66.667 4.52 3.16 40.96 3.86
4949 5781 4.783621 GCTGTCCGCCATGCTGGA 62.784 66.667 6.40 0.33 40.96 3.86
4950 5782 4.790962 AGCTGTCCGCCATGCTGG 62.791 66.667 0.00 0.00 41.55 4.85
4951 5783 3.506096 CAGCTGTCCGCCATGCTG 61.506 66.667 5.25 0.00 45.15 4.41
4952 5784 3.709633 TCAGCTGTCCGCCATGCT 61.710 61.111 14.67 0.00 40.39 3.79
4953 5785 3.503363 GTCAGCTGTCCGCCATGC 61.503 66.667 14.67 0.00 40.39 4.06
4954 5786 2.821366 GGTCAGCTGTCCGCCATG 60.821 66.667 14.34 0.00 40.39 3.66
4955 5787 4.101448 GGGTCAGCTGTCCGCCAT 62.101 66.667 21.42 0.00 40.39 4.40
4958 5790 4.803426 CTCGGGTCAGCTGTCCGC 62.803 72.222 31.38 22.11 43.10 5.54
4959 5791 3.343788 GACTCGGGTCAGCTGTCCG 62.344 68.421 30.81 30.81 44.59 4.79
4960 5792 2.574399 GACTCGGGTCAGCTGTCC 59.426 66.667 20.35 20.35 41.75 4.02
4961 5793 1.536943 AAGGACTCGGGTCAGCTGTC 61.537 60.000 18.98 8.19 43.77 3.51
4962 5794 1.534235 AAGGACTCGGGTCAGCTGT 60.534 57.895 18.98 0.00 43.77 4.40
4963 5795 1.216710 GAAGGACTCGGGTCAGCTG 59.783 63.158 18.98 7.63 43.77 4.24
4964 5796 1.228894 TGAAGGACTCGGGTCAGCT 60.229 57.895 18.98 2.64 43.77 4.24
4965 5797 1.079750 GTGAAGGACTCGGGTCAGC 60.080 63.158 18.98 6.11 43.77 4.26
4966 5798 0.900647 AGGTGAAGGACTCGGGTCAG 60.901 60.000 18.98 0.00 43.77 3.51
4967 5799 0.471211 AAGGTGAAGGACTCGGGTCA 60.471 55.000 18.98 0.00 43.77 4.02
4968 5800 0.246910 GAAGGTGAAGGACTCGGGTC 59.753 60.000 6.97 6.97 41.43 4.46
4969 5801 0.471211 TGAAGGTGAAGGACTCGGGT 60.471 55.000 0.00 0.00 0.00 5.28
4970 5802 0.247736 CTGAAGGTGAAGGACTCGGG 59.752 60.000 0.00 0.00 0.00 5.14
4971 5803 1.257743 TCTGAAGGTGAAGGACTCGG 58.742 55.000 0.00 0.00 0.00 4.63
4972 5804 2.159170 GGATCTGAAGGTGAAGGACTCG 60.159 54.545 0.00 0.00 0.00 4.18
4973 5805 2.159170 CGGATCTGAAGGTGAAGGACTC 60.159 54.545 0.00 0.00 0.00 3.36
4974 5806 1.827969 CGGATCTGAAGGTGAAGGACT 59.172 52.381 0.00 0.00 0.00 3.85
4975 5807 1.550976 ACGGATCTGAAGGTGAAGGAC 59.449 52.381 9.00 0.00 0.00 3.85
4976 5808 1.825474 GACGGATCTGAAGGTGAAGGA 59.175 52.381 9.00 0.00 0.00 3.36
4977 5809 1.469940 CGACGGATCTGAAGGTGAAGG 60.470 57.143 9.00 0.00 0.00 3.46
4978 5810 1.472878 TCGACGGATCTGAAGGTGAAG 59.527 52.381 9.00 0.00 0.00 3.02
4979 5811 1.201647 GTCGACGGATCTGAAGGTGAA 59.798 52.381 9.00 0.00 0.00 3.18
4980 5812 0.809385 GTCGACGGATCTGAAGGTGA 59.191 55.000 9.00 0.00 0.00 4.02
4981 5813 0.811915 AGTCGACGGATCTGAAGGTG 59.188 55.000 9.00 0.00 0.00 4.00
4982 5814 1.096416 GAGTCGACGGATCTGAAGGT 58.904 55.000 9.00 0.00 0.00 3.50
4983 5815 0.382515 GGAGTCGACGGATCTGAAGG 59.617 60.000 9.00 0.00 0.00 3.46
4984 5816 0.028242 CGGAGTCGACGGATCTGAAG 59.972 60.000 9.00 1.51 39.00 3.02
4985 5817 0.392060 TCGGAGTCGACGGATCTGAA 60.392 55.000 9.00 0.00 40.88 3.02
4986 5818 0.392060 TTCGGAGTCGACGGATCTGA 60.392 55.000 9.00 10.18 45.92 3.27
4987 5819 0.248134 GTTCGGAGTCGACGGATCTG 60.248 60.000 10.46 7.83 45.92 2.90
4988 5820 0.392729 AGTTCGGAGTCGACGGATCT 60.393 55.000 10.46 10.32 45.92 2.75
4989 5821 0.027848 GAGTTCGGAGTCGACGGATC 59.972 60.000 10.46 8.32 45.92 3.36
4990 5822 0.675837 TGAGTTCGGAGTCGACGGAT 60.676 55.000 10.46 0.00 45.92 4.18
4991 5823 0.675837 ATGAGTTCGGAGTCGACGGA 60.676 55.000 10.46 6.41 45.92 4.69
4992 5824 0.248134 GATGAGTTCGGAGTCGACGG 60.248 60.000 10.46 3.90 45.92 4.79
4993 5825 0.248134 GGATGAGTTCGGAGTCGACG 60.248 60.000 10.46 0.00 45.92 5.12
4994 5826 0.100861 GGGATGAGTTCGGAGTCGAC 59.899 60.000 7.70 7.70 45.92 4.20
4995 5827 0.323087 TGGGATGAGTTCGGAGTCGA 60.323 55.000 0.00 0.00 44.44 4.20
4996 5828 0.179134 GTGGGATGAGTTCGGAGTCG 60.179 60.000 0.00 0.00 37.82 4.18
4997 5829 0.179134 CGTGGGATGAGTTCGGAGTC 60.179 60.000 0.00 0.00 0.00 3.36
4998 5830 1.890894 CGTGGGATGAGTTCGGAGT 59.109 57.895 0.00 0.00 0.00 3.85
4999 5831 1.519455 GCGTGGGATGAGTTCGGAG 60.519 63.158 0.00 0.00 0.00 4.63
5000 5832 1.822114 TTGCGTGGGATGAGTTCGGA 61.822 55.000 0.00 0.00 0.00 4.55
5001 5833 1.375396 TTGCGTGGGATGAGTTCGG 60.375 57.895 0.00 0.00 0.00 4.30
5002 5834 1.635663 GGTTGCGTGGGATGAGTTCG 61.636 60.000 0.00 0.00 0.00 3.95
5003 5835 1.305930 GGGTTGCGTGGGATGAGTTC 61.306 60.000 0.00 0.00 0.00 3.01
5004 5836 1.303317 GGGTTGCGTGGGATGAGTT 60.303 57.895 0.00 0.00 0.00 3.01
5005 5837 2.351276 GGGTTGCGTGGGATGAGT 59.649 61.111 0.00 0.00 0.00 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.