Multiple sequence alignment - TraesCS2B01G526800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G526800 chr2B 100.000 3110 0 0 1 3110 721115693 721112584 0.000000e+00 5744.0
1 TraesCS2B01G526800 chr2A 94.573 1603 70 6 1517 3110 728759616 728758022 0.000000e+00 2462.0
2 TraesCS2B01G526800 chr2A 80.164 1099 102 56 437 1501 728760682 728759666 0.000000e+00 715.0
3 TraesCS2B01G526800 chr2D 95.319 1410 56 5 1705 3110 594103025 594101622 0.000000e+00 2230.0
4 TraesCS2B01G526800 chr2D 85.284 564 26 24 758 1294 594103906 594103373 2.120000e-146 529.0
5 TraesCS2B01G526800 chr2D 87.415 294 20 10 437 727 594104248 594103969 3.870000e-84 322.0
6 TraesCS2B01G526800 chr2D 86.555 119 15 1 159 276 472023244 472023126 2.520000e-26 130.0
7 TraesCS2B01G526800 chr7D 89.831 118 12 0 159 276 129822514 129822631 5.370000e-33 152.0
8 TraesCS2B01G526800 chr7D 86.555 119 14 2 159 276 367576792 367576675 2.520000e-26 130.0
9 TraesCS2B01G526800 chr1D 89.655 116 12 0 161 276 233888698 233888583 6.950000e-32 148.0
10 TraesCS2B01G526800 chr1D 76.056 284 33 14 1 276 367673776 367674032 7.050000e-22 115.0
11 TraesCS2B01G526800 chr4B 88.136 118 14 0 159 276 99014548 99014665 1.160000e-29 141.0
12 TraesCS2B01G526800 chr5A 86.726 113 15 0 1 113 635900975 635901087 3.260000e-25 126.0
13 TraesCS2B01G526800 chr5A 85.593 118 17 0 159 276 680739453 680739336 1.170000e-24 124.0
14 TraesCS2B01G526800 chr3B 82.353 119 20 1 159 276 146295504 146295622 5.490000e-18 102.0
15 TraesCS2B01G526800 chr3A 81.513 119 21 1 159 276 56387931 56388049 2.550000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G526800 chr2B 721112584 721115693 3109 True 5744.0 5744 100.000000 1 3110 1 chr2B.!!$R1 3109
1 TraesCS2B01G526800 chr2A 728758022 728760682 2660 True 1588.5 2462 87.368500 437 3110 2 chr2A.!!$R1 2673
2 TraesCS2B01G526800 chr2D 594101622 594104248 2626 True 1027.0 2230 89.339333 437 3110 3 chr2D.!!$R2 2673

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
474 475 0.029834 GCAGGCGGCATTGTAATCAG 59.970 55.0 13.08 0.0 43.97 2.90 F
700 707 0.101759 GCAAGCGATACACCCTCGTA 59.898 55.0 0.00 0.0 38.37 3.43 F
1193 1239 0.321034 TCACTCATCACTGTGCCTGC 60.321 55.0 2.12 0.0 34.49 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1998 2149 0.108615 ACATTCGAACCGGCAGAGAG 60.109 55.0 0.0 0.0 0.00 3.20 R
1999 2150 0.320374 AACATTCGAACCGGCAGAGA 59.680 50.0 0.0 0.0 0.00 3.10 R
2708 2867 1.004595 CTGTCATCACAGCATCCACG 58.995 55.0 0.0 0.0 43.77 4.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 7.847487 TCTAAAATGTATAATTGCCGTTCTCG 58.153 34.615 0.00 0.00 0.00 4.04
26 27 6.431198 AAAATGTATAATTGCCGTTCTCGT 57.569 33.333 0.00 0.00 35.01 4.18
27 28 6.431198 AAATGTATAATTGCCGTTCTCGTT 57.569 33.333 0.00 0.00 35.01 3.85
28 29 6.431198 AATGTATAATTGCCGTTCTCGTTT 57.569 33.333 0.00 0.00 35.01 3.60
29 30 5.866335 TGTATAATTGCCGTTCTCGTTTT 57.134 34.783 0.00 0.00 35.01 2.43
30 31 5.860641 TGTATAATTGCCGTTCTCGTTTTC 58.139 37.500 0.00 0.00 35.01 2.29
31 32 5.640357 TGTATAATTGCCGTTCTCGTTTTCT 59.360 36.000 0.00 0.00 35.01 2.52
32 33 3.982576 AATTGCCGTTCTCGTTTTCTT 57.017 38.095 0.00 0.00 35.01 2.52
33 34 3.982576 ATTGCCGTTCTCGTTTTCTTT 57.017 38.095 0.00 0.00 35.01 2.52
34 35 2.748461 TGCCGTTCTCGTTTTCTTTG 57.252 45.000 0.00 0.00 35.01 2.77
35 36 1.332375 TGCCGTTCTCGTTTTCTTTGG 59.668 47.619 0.00 0.00 35.01 3.28
36 37 1.332686 GCCGTTCTCGTTTTCTTTGGT 59.667 47.619 0.00 0.00 35.01 3.67
37 38 2.601504 GCCGTTCTCGTTTTCTTTGGTC 60.602 50.000 0.00 0.00 35.01 4.02
38 39 2.032290 CCGTTCTCGTTTTCTTTGGTCC 60.032 50.000 0.00 0.00 35.01 4.46
39 40 2.870411 CGTTCTCGTTTTCTTTGGTCCT 59.130 45.455 0.00 0.00 0.00 3.85
40 41 4.053295 CGTTCTCGTTTTCTTTGGTCCTA 58.947 43.478 0.00 0.00 0.00 2.94
41 42 4.084693 CGTTCTCGTTTTCTTTGGTCCTAC 60.085 45.833 0.00 0.00 0.00 3.18
42 43 4.950205 TCTCGTTTTCTTTGGTCCTACT 57.050 40.909 0.00 0.00 0.00 2.57
43 44 6.218746 GTTCTCGTTTTCTTTGGTCCTACTA 58.781 40.000 0.00 0.00 0.00 1.82
44 45 6.600882 TCTCGTTTTCTTTGGTCCTACTAT 57.399 37.500 0.00 0.00 0.00 2.12
45 46 7.001099 TCTCGTTTTCTTTGGTCCTACTATT 57.999 36.000 0.00 0.00 0.00 1.73
46 47 7.095270 TCTCGTTTTCTTTGGTCCTACTATTC 58.905 38.462 0.00 0.00 0.00 1.75
47 48 7.001099 TCGTTTTCTTTGGTCCTACTATTCT 57.999 36.000 0.00 0.00 0.00 2.40
48 49 8.125978 TCGTTTTCTTTGGTCCTACTATTCTA 57.874 34.615 0.00 0.00 0.00 2.10
49 50 8.587608 TCGTTTTCTTTGGTCCTACTATTCTAA 58.412 33.333 0.00 0.00 0.00 2.10
50 51 8.654215 CGTTTTCTTTGGTCCTACTATTCTAAC 58.346 37.037 0.00 0.00 0.00 2.34
51 52 9.498176 GTTTTCTTTGGTCCTACTATTCTAACA 57.502 33.333 0.00 0.00 0.00 2.41
54 55 9.720769 TTCTTTGGTCCTACTATTCTAACAAAG 57.279 33.333 0.00 0.00 41.95 2.77
55 56 9.096823 TCTTTGGTCCTACTATTCTAACAAAGA 57.903 33.333 9.19 9.19 44.95 2.52
56 57 9.892130 CTTTGGTCCTACTATTCTAACAAAGAT 57.108 33.333 5.45 0.00 42.73 2.40
59 60 9.667107 TGGTCCTACTATTCTAACAAAGATTTG 57.333 33.333 3.79 3.79 43.62 2.32
60 61 9.886132 GGTCCTACTATTCTAACAAAGATTTGA 57.114 33.333 12.07 0.00 40.55 2.69
78 79 9.645128 AAGATTTGATGAATTACCATGTATCCA 57.355 29.630 0.00 0.00 0.00 3.41
79 80 9.645128 AGATTTGATGAATTACCATGTATCCAA 57.355 29.630 0.00 0.00 0.00 3.53
82 83 7.218228 TGATGAATTACCATGTATCCAATGC 57.782 36.000 0.00 0.00 0.00 3.56
83 84 6.209192 TGATGAATTACCATGTATCCAATGCC 59.791 38.462 0.00 0.00 0.00 4.40
84 85 4.518590 TGAATTACCATGTATCCAATGCCG 59.481 41.667 0.00 0.00 0.00 5.69
85 86 3.569194 TTACCATGTATCCAATGCCGT 57.431 42.857 0.00 0.00 0.00 5.68
86 87 2.435372 ACCATGTATCCAATGCCGTT 57.565 45.000 0.00 0.00 0.00 4.44
87 88 2.023673 ACCATGTATCCAATGCCGTTG 58.976 47.619 0.00 0.00 37.57 4.10
88 89 2.296792 CCATGTATCCAATGCCGTTGA 58.703 47.619 0.00 0.00 40.37 3.18
89 90 2.687425 CCATGTATCCAATGCCGTTGAA 59.313 45.455 0.00 0.00 40.37 2.69
90 91 3.243168 CCATGTATCCAATGCCGTTGAAG 60.243 47.826 0.00 0.00 40.37 3.02
91 92 3.342377 TGTATCCAATGCCGTTGAAGA 57.658 42.857 0.00 0.00 40.37 2.87
92 93 3.680490 TGTATCCAATGCCGTTGAAGAA 58.320 40.909 0.00 0.00 40.37 2.52
93 94 4.075682 TGTATCCAATGCCGTTGAAGAAA 58.924 39.130 0.00 0.00 40.37 2.52
94 95 4.520874 TGTATCCAATGCCGTTGAAGAAAA 59.479 37.500 0.00 0.00 40.37 2.29
95 96 4.806640 ATCCAATGCCGTTGAAGAAAAT 57.193 36.364 0.00 0.00 40.37 1.82
96 97 5.913137 ATCCAATGCCGTTGAAGAAAATA 57.087 34.783 0.00 0.00 40.37 1.40
97 98 5.713792 TCCAATGCCGTTGAAGAAAATAA 57.286 34.783 0.00 0.00 40.37 1.40
98 99 6.090483 TCCAATGCCGTTGAAGAAAATAAA 57.910 33.333 0.00 0.00 40.37 1.40
99 100 6.516718 TCCAATGCCGTTGAAGAAAATAAAA 58.483 32.000 0.00 0.00 40.37 1.52
100 101 6.986817 TCCAATGCCGTTGAAGAAAATAAAAA 59.013 30.769 0.00 0.00 40.37 1.94
121 122 7.903995 AAAAAGCAAAGAAATGTGTCTGAAA 57.096 28.000 0.00 0.00 0.00 2.69
122 123 8.496707 AAAAAGCAAAGAAATGTGTCTGAAAT 57.503 26.923 0.00 0.00 0.00 2.17
123 124 7.704789 AAAGCAAAGAAATGTGTCTGAAATC 57.295 32.000 0.00 0.00 0.00 2.17
124 125 6.395426 AGCAAAGAAATGTGTCTGAAATCA 57.605 33.333 0.00 0.00 0.00 2.57
125 126 6.808829 AGCAAAGAAATGTGTCTGAAATCAA 58.191 32.000 0.00 0.00 0.00 2.57
126 127 7.267128 AGCAAAGAAATGTGTCTGAAATCAAA 58.733 30.769 0.00 0.00 0.00 2.69
127 128 7.765360 AGCAAAGAAATGTGTCTGAAATCAAAA 59.235 29.630 0.00 0.00 0.00 2.44
128 129 8.553696 GCAAAGAAATGTGTCTGAAATCAAAAT 58.446 29.630 0.00 0.00 0.00 1.82
129 130 9.858247 CAAAGAAATGTGTCTGAAATCAAAATG 57.142 29.630 0.00 0.00 0.00 2.32
130 131 7.647907 AGAAATGTGTCTGAAATCAAAATGC 57.352 32.000 0.00 0.00 0.00 3.56
131 132 7.211573 AGAAATGTGTCTGAAATCAAAATGCA 58.788 30.769 0.00 0.00 0.00 3.96
132 133 7.711772 AGAAATGTGTCTGAAATCAAAATGCAA 59.288 29.630 0.00 0.00 0.00 4.08
133 134 7.789273 AATGTGTCTGAAATCAAAATGCAAA 57.211 28.000 0.00 0.00 0.00 3.68
134 135 7.972832 ATGTGTCTGAAATCAAAATGCAAAT 57.027 28.000 0.00 0.00 0.00 2.32
135 136 7.789273 TGTGTCTGAAATCAAAATGCAAATT 57.211 28.000 0.00 0.00 0.00 1.82
136 137 8.883954 TGTGTCTGAAATCAAAATGCAAATTA 57.116 26.923 0.00 0.00 0.00 1.40
137 138 8.763356 TGTGTCTGAAATCAAAATGCAAATTAC 58.237 29.630 0.00 0.00 0.00 1.89
138 139 8.981647 GTGTCTGAAATCAAAATGCAAATTACT 58.018 29.630 0.00 0.00 0.00 2.24
139 140 8.980610 TGTCTGAAATCAAAATGCAAATTACTG 58.019 29.630 0.00 0.00 0.00 2.74
140 141 9.195411 GTCTGAAATCAAAATGCAAATTACTGA 57.805 29.630 0.00 0.00 0.00 3.41
141 142 9.195411 TCTGAAATCAAAATGCAAATTACTGAC 57.805 29.630 0.00 0.00 0.00 3.51
142 143 9.199982 CTGAAATCAAAATGCAAATTACTGACT 57.800 29.630 0.00 0.00 0.00 3.41
143 144 9.545105 TGAAATCAAAATGCAAATTACTGACTT 57.455 25.926 0.00 0.00 0.00 3.01
146 147 7.621832 TCAAAATGCAAATTACTGACTTTCG 57.378 32.000 0.00 0.00 0.00 3.46
147 148 6.640499 TCAAAATGCAAATTACTGACTTTCGG 59.360 34.615 0.00 0.00 0.00 4.30
148 149 3.552604 TGCAAATTACTGACTTTCGGC 57.447 42.857 0.00 0.00 0.00 5.54
149 150 2.227865 TGCAAATTACTGACTTTCGGCC 59.772 45.455 0.00 0.00 0.00 6.13
150 151 2.415491 GCAAATTACTGACTTTCGGCCC 60.415 50.000 0.00 0.00 0.00 5.80
151 152 1.734163 AATTACTGACTTTCGGCCCG 58.266 50.000 0.00 0.00 0.00 6.13
152 153 0.107848 ATTACTGACTTTCGGCCCGG 60.108 55.000 1.90 0.00 0.00 5.73
153 154 2.791501 TTACTGACTTTCGGCCCGGC 62.792 60.000 1.90 0.00 0.00 6.13
172 173 3.423154 CGGACGGGTCTGCTTTGC 61.423 66.667 0.00 0.00 0.00 3.68
173 174 3.423154 GGACGGGTCTGCTTTGCG 61.423 66.667 0.00 0.00 0.00 4.85
174 175 2.357034 GACGGGTCTGCTTTGCGA 60.357 61.111 0.00 0.00 0.00 5.10
175 176 2.357517 ACGGGTCTGCTTTGCGAG 60.358 61.111 0.00 0.00 0.00 5.03
176 177 3.121030 CGGGTCTGCTTTGCGAGG 61.121 66.667 0.00 0.00 0.00 4.63
177 178 2.032681 GGGTCTGCTTTGCGAGGT 59.967 61.111 0.00 0.00 0.00 3.85
178 179 2.035442 GGGTCTGCTTTGCGAGGTC 61.035 63.158 0.00 0.00 0.00 3.85
179 180 1.004440 GGTCTGCTTTGCGAGGTCT 60.004 57.895 0.00 0.00 0.00 3.85
180 181 1.294659 GGTCTGCTTTGCGAGGTCTG 61.295 60.000 0.00 0.00 0.00 3.51
181 182 1.669115 TCTGCTTTGCGAGGTCTGC 60.669 57.895 0.00 0.00 0.00 4.26
182 183 1.670406 CTGCTTTGCGAGGTCTGCT 60.670 57.895 0.00 0.00 0.00 4.24
183 184 1.633852 CTGCTTTGCGAGGTCTGCTC 61.634 60.000 0.00 0.00 0.00 4.26
184 185 2.734673 GCTTTGCGAGGTCTGCTCG 61.735 63.158 0.00 0.00 45.93 5.03
185 186 2.048222 TTTGCGAGGTCTGCTCGG 60.048 61.111 0.00 0.00 43.68 4.63
186 187 4.742201 TTGCGAGGTCTGCTCGGC 62.742 66.667 0.00 0.00 43.68 5.54
190 191 4.500116 GAGGTCTGCTCGGCCGTC 62.500 72.222 27.15 18.51 0.00 4.79
217 218 2.360726 GGCCCACGAATCCGGTTT 60.361 61.111 0.00 0.00 40.78 3.27
218 219 1.974875 GGCCCACGAATCCGGTTTT 60.975 57.895 0.00 0.00 40.78 2.43
219 220 1.504900 GCCCACGAATCCGGTTTTC 59.495 57.895 0.00 5.57 40.78 2.29
220 221 1.929806 GCCCACGAATCCGGTTTTCC 61.930 60.000 0.00 0.00 40.78 3.13
234 235 2.653113 GGTTTTCCGCGAATTGTAAACG 59.347 45.455 8.23 0.00 0.00 3.60
251 252 2.030262 GCATTTTGCGGGTTGGCA 59.970 55.556 0.00 0.00 42.12 4.92
252 253 1.375780 GCATTTTGCGGGTTGGCAT 60.376 52.632 0.00 0.00 43.52 4.40
253 254 0.954938 GCATTTTGCGGGTTGGCATT 60.955 50.000 0.00 0.00 43.52 3.56
254 255 1.674221 GCATTTTGCGGGTTGGCATTA 60.674 47.619 0.00 0.00 43.52 1.90
255 256 2.903798 CATTTTGCGGGTTGGCATTAT 58.096 42.857 0.00 0.00 43.52 1.28
256 257 3.739519 GCATTTTGCGGGTTGGCATTATA 60.740 43.478 0.00 0.00 43.52 0.98
257 258 3.512033 TTTTGCGGGTTGGCATTATAC 57.488 42.857 0.00 0.00 43.52 1.47
258 259 1.018148 TTGCGGGTTGGCATTATACG 58.982 50.000 0.00 0.00 43.52 3.06
259 260 0.816018 TGCGGGTTGGCATTATACGG 60.816 55.000 0.00 0.00 38.17 4.02
260 261 1.512156 GCGGGTTGGCATTATACGGG 61.512 60.000 0.00 0.00 0.00 5.28
261 262 0.887387 CGGGTTGGCATTATACGGGG 60.887 60.000 0.00 0.00 0.00 5.73
262 263 0.184211 GGGTTGGCATTATACGGGGT 59.816 55.000 0.00 0.00 0.00 4.95
263 264 1.601166 GGTTGGCATTATACGGGGTC 58.399 55.000 0.00 0.00 0.00 4.46
264 265 1.142262 GGTTGGCATTATACGGGGTCT 59.858 52.381 0.00 0.00 0.00 3.85
265 266 2.218603 GTTGGCATTATACGGGGTCTG 58.781 52.381 0.00 0.00 0.00 3.51
266 267 0.107831 TGGCATTATACGGGGTCTGC 59.892 55.000 0.00 0.00 0.00 4.26
267 268 0.396811 GGCATTATACGGGGTCTGCT 59.603 55.000 0.00 0.00 0.00 4.24
268 269 1.621814 GGCATTATACGGGGTCTGCTA 59.378 52.381 0.00 0.00 0.00 3.49
269 270 2.353803 GGCATTATACGGGGTCTGCTAG 60.354 54.545 0.00 0.00 0.00 3.42
270 271 2.561419 GCATTATACGGGGTCTGCTAGA 59.439 50.000 0.00 0.00 0.00 2.43
271 272 3.367498 GCATTATACGGGGTCTGCTAGAG 60.367 52.174 0.00 0.00 0.00 2.43
272 273 3.870538 TTATACGGGGTCTGCTAGAGA 57.129 47.619 0.00 0.00 0.00 3.10
273 274 2.982339 ATACGGGGTCTGCTAGAGAT 57.018 50.000 0.00 0.00 31.63 2.75
274 275 1.982660 TACGGGGTCTGCTAGAGATG 58.017 55.000 0.00 0.00 31.63 2.90
275 276 1.365633 CGGGGTCTGCTAGAGATGC 59.634 63.158 0.00 0.00 31.63 3.91
276 277 1.751563 GGGGTCTGCTAGAGATGCC 59.248 63.158 0.00 0.00 31.63 4.40
277 278 1.050988 GGGGTCTGCTAGAGATGCCA 61.051 60.000 0.00 0.00 31.63 4.92
278 279 1.055040 GGGTCTGCTAGAGATGCCAT 58.945 55.000 0.00 0.00 31.63 4.40
279 280 2.251818 GGGTCTGCTAGAGATGCCATA 58.748 52.381 0.00 0.00 31.63 2.74
280 281 2.233431 GGGTCTGCTAGAGATGCCATAG 59.767 54.545 0.00 0.00 31.63 2.23
281 282 2.233431 GGTCTGCTAGAGATGCCATAGG 59.767 54.545 0.00 0.00 31.63 2.57
282 283 2.233431 GTCTGCTAGAGATGCCATAGGG 59.767 54.545 0.00 0.00 31.63 3.53
283 284 2.110721 TCTGCTAGAGATGCCATAGGGA 59.889 50.000 0.00 0.00 35.59 4.20
284 285 2.233431 CTGCTAGAGATGCCATAGGGAC 59.767 54.545 0.00 0.00 35.59 4.46
285 286 1.552792 GCTAGAGATGCCATAGGGACC 59.447 57.143 0.00 0.00 35.59 4.46
286 287 2.894731 CTAGAGATGCCATAGGGACCA 58.105 52.381 0.00 0.00 35.59 4.02
287 288 2.429933 AGAGATGCCATAGGGACCAT 57.570 50.000 0.00 0.00 35.59 3.55
288 289 2.711174 AGAGATGCCATAGGGACCATT 58.289 47.619 0.00 0.00 35.59 3.16
289 290 3.874316 AGAGATGCCATAGGGACCATTA 58.126 45.455 0.00 0.00 35.59 1.90
290 291 3.843027 AGAGATGCCATAGGGACCATTAG 59.157 47.826 0.00 0.00 35.59 1.73
291 292 2.915604 AGATGCCATAGGGACCATTAGG 59.084 50.000 0.00 0.00 35.59 2.69
292 293 1.444933 TGCCATAGGGACCATTAGGG 58.555 55.000 0.00 0.00 37.39 3.53
293 294 0.698818 GCCATAGGGACCATTAGGGG 59.301 60.000 0.00 0.00 36.13 4.79
300 301 3.519291 ACCATTAGGGGCAAGCCA 58.481 55.556 13.87 0.00 42.91 4.75
301 302 1.000359 ACCATTAGGGGCAAGCCAC 60.000 57.895 13.87 9.75 42.91 5.01
302 303 1.758122 CCATTAGGGGCAAGCCACC 60.758 63.158 10.26 9.94 41.37 4.61
303 304 2.120909 CATTAGGGGCAAGCCACCG 61.121 63.158 10.26 0.00 41.37 4.94
304 305 4.733542 TTAGGGGCAAGCCACCGC 62.734 66.667 10.26 0.00 41.37 5.68
309 310 3.142838 GGCAAGCCACCGCATGAT 61.143 61.111 6.14 0.00 35.71 2.45
310 311 2.410469 GCAAGCCACCGCATGATC 59.590 61.111 0.00 0.00 35.71 2.92
311 312 2.409055 GCAAGCCACCGCATGATCA 61.409 57.895 0.00 0.00 35.71 2.92
312 313 1.936436 GCAAGCCACCGCATGATCAA 61.936 55.000 0.00 0.00 35.71 2.57
313 314 0.099968 CAAGCCACCGCATGATCAAG 59.900 55.000 0.00 0.00 35.71 3.02
314 315 1.033746 AAGCCACCGCATGATCAAGG 61.034 55.000 0.00 6.59 37.52 3.61
315 316 3.113745 CCACCGCATGATCAAGGC 58.886 61.111 13.20 12.41 0.00 4.35
316 317 1.750018 CCACCGCATGATCAAGGCA 60.750 57.895 19.05 0.00 0.00 4.75
317 318 1.430632 CACCGCATGATCAAGGCAC 59.569 57.895 19.05 0.00 0.00 5.01
318 319 1.002257 ACCGCATGATCAAGGCACA 60.002 52.632 19.05 0.00 0.00 4.57
319 320 1.308069 ACCGCATGATCAAGGCACAC 61.308 55.000 19.05 0.00 0.00 3.82
320 321 1.430632 CGCATGATCAAGGCACACC 59.569 57.895 19.05 0.00 0.00 4.16
350 351 3.845781 TTTAGAGCCATCCTGCTTAGG 57.154 47.619 0.00 0.00 42.95 2.69
353 354 2.203408 GCCATCCTGCTTAGGCCC 60.203 66.667 0.00 0.00 41.25 5.80
354 355 3.060614 GCCATCCTGCTTAGGCCCA 62.061 63.158 0.00 0.00 41.25 5.36
355 356 1.614711 CCATCCTGCTTAGGCCCAA 59.385 57.895 0.00 0.00 37.74 4.12
356 357 0.033208 CCATCCTGCTTAGGCCCAAA 60.033 55.000 0.00 0.00 37.74 3.28
357 358 1.412074 CCATCCTGCTTAGGCCCAAAT 60.412 52.381 0.00 0.00 37.74 2.32
358 359 1.959282 CATCCTGCTTAGGCCCAAATC 59.041 52.381 0.00 0.00 37.74 2.17
359 360 0.107214 TCCTGCTTAGGCCCAAATCG 60.107 55.000 0.00 0.00 37.74 3.34
360 361 0.107214 CCTGCTTAGGCCCAAATCGA 60.107 55.000 0.00 0.00 37.74 3.59
361 362 1.681780 CCTGCTTAGGCCCAAATCGAA 60.682 52.381 0.00 0.00 37.74 3.71
362 363 2.301346 CTGCTTAGGCCCAAATCGAAT 58.699 47.619 0.00 0.00 37.74 3.34
363 364 3.476552 CTGCTTAGGCCCAAATCGAATA 58.523 45.455 0.00 0.00 37.74 1.75
364 365 3.882888 CTGCTTAGGCCCAAATCGAATAA 59.117 43.478 0.00 0.00 37.74 1.40
365 366 4.469657 TGCTTAGGCCCAAATCGAATAAT 58.530 39.130 0.00 0.00 37.74 1.28
366 367 4.892934 TGCTTAGGCCCAAATCGAATAATT 59.107 37.500 0.00 0.00 37.74 1.40
367 368 5.362430 TGCTTAGGCCCAAATCGAATAATTT 59.638 36.000 0.00 0.00 37.74 1.82
368 369 5.920840 GCTTAGGCCCAAATCGAATAATTTC 59.079 40.000 0.00 0.00 0.00 2.17
369 370 6.239036 GCTTAGGCCCAAATCGAATAATTTCT 60.239 38.462 0.00 0.00 0.00 2.52
370 371 7.654022 TTAGGCCCAAATCGAATAATTTCTT 57.346 32.000 0.00 0.00 0.00 2.52
371 372 6.544928 AGGCCCAAATCGAATAATTTCTTT 57.455 33.333 0.00 0.00 0.00 2.52
372 373 6.340522 AGGCCCAAATCGAATAATTTCTTTG 58.659 36.000 0.00 0.00 31.61 2.77
373 374 6.070824 AGGCCCAAATCGAATAATTTCTTTGT 60.071 34.615 0.00 0.00 30.63 2.83
374 375 6.035975 GGCCCAAATCGAATAATTTCTTTGTG 59.964 38.462 0.00 0.00 30.63 3.33
375 376 6.035975 GCCCAAATCGAATAATTTCTTTGTGG 59.964 38.462 0.00 0.00 30.63 4.17
376 377 6.035975 CCCAAATCGAATAATTTCTTTGTGGC 59.964 38.462 0.00 0.00 30.63 5.01
377 378 6.589523 CCAAATCGAATAATTTCTTTGTGGCA 59.410 34.615 0.00 0.00 30.63 4.92
378 379 7.278424 CCAAATCGAATAATTTCTTTGTGGCAT 59.722 33.333 0.00 0.00 30.63 4.40
379 380 9.299963 CAAATCGAATAATTTCTTTGTGGCATA 57.700 29.630 0.00 0.00 29.22 3.14
380 381 9.868277 AAATCGAATAATTTCTTTGTGGCATAA 57.132 25.926 0.00 0.00 0.00 1.90
381 382 9.868277 AATCGAATAATTTCTTTGTGGCATAAA 57.132 25.926 9.13 9.13 0.00 1.40
382 383 9.868277 ATCGAATAATTTCTTTGTGGCATAAAA 57.132 25.926 10.66 4.72 0.00 1.52
383 384 9.698309 TCGAATAATTTCTTTGTGGCATAAAAA 57.302 25.926 10.66 3.87 0.00 1.94
398 399 3.625314 AAAAACCCTTGGTGCCAGA 57.375 47.368 0.00 0.00 35.34 3.86
399 400 1.413118 AAAAACCCTTGGTGCCAGAG 58.587 50.000 0.00 0.00 35.34 3.35
400 401 0.555769 AAAACCCTTGGTGCCAGAGA 59.444 50.000 0.00 0.00 35.34 3.10
401 402 0.111253 AAACCCTTGGTGCCAGAGAG 59.889 55.000 0.00 0.00 35.34 3.20
402 403 0.768221 AACCCTTGGTGCCAGAGAGA 60.768 55.000 0.00 0.00 35.34 3.10
403 404 1.298014 CCCTTGGTGCCAGAGAGAC 59.702 63.158 0.00 0.00 0.00 3.36
404 405 1.298014 CCTTGGTGCCAGAGAGACC 59.702 63.158 0.00 0.00 0.00 3.85
405 406 1.197430 CCTTGGTGCCAGAGAGACCT 61.197 60.000 0.00 0.00 0.00 3.85
406 407 0.689623 CTTGGTGCCAGAGAGACCTT 59.310 55.000 0.00 0.00 0.00 3.50
407 408 1.902508 CTTGGTGCCAGAGAGACCTTA 59.097 52.381 0.00 0.00 0.00 2.69
408 409 1.561643 TGGTGCCAGAGAGACCTTAG 58.438 55.000 0.00 0.00 0.00 2.18
409 410 1.077169 TGGTGCCAGAGAGACCTTAGA 59.923 52.381 0.00 0.00 0.00 2.10
410 411 1.754226 GGTGCCAGAGAGACCTTAGAG 59.246 57.143 0.00 0.00 0.00 2.43
411 412 2.452505 GTGCCAGAGAGACCTTAGAGT 58.547 52.381 0.00 0.00 0.00 3.24
412 413 2.165437 GTGCCAGAGAGACCTTAGAGTG 59.835 54.545 0.00 0.00 0.00 3.51
413 414 2.225142 TGCCAGAGAGACCTTAGAGTGT 60.225 50.000 0.00 0.00 0.00 3.55
414 415 2.165437 GCCAGAGAGACCTTAGAGTGTG 59.835 54.545 0.00 0.00 0.00 3.82
415 416 2.757868 CCAGAGAGACCTTAGAGTGTGG 59.242 54.545 0.00 0.00 0.00 4.17
416 417 3.426615 CAGAGAGACCTTAGAGTGTGGT 58.573 50.000 0.00 0.00 36.70 4.16
419 420 3.420397 GACCTTAGAGTGTGGTCGC 57.580 57.895 0.00 0.00 40.44 5.19
420 421 0.601558 GACCTTAGAGTGTGGTCGCA 59.398 55.000 0.00 0.00 40.44 5.10
421 422 0.317479 ACCTTAGAGTGTGGTCGCAC 59.683 55.000 6.55 6.55 39.51 5.34
422 423 0.732880 CCTTAGAGTGTGGTCGCACG 60.733 60.000 8.72 0.00 43.61 5.34
423 424 0.039437 CTTAGAGTGTGGTCGCACGT 60.039 55.000 8.72 4.01 43.61 4.49
424 425 1.198408 CTTAGAGTGTGGTCGCACGTA 59.802 52.381 8.72 3.18 43.61 3.57
425 426 1.456296 TAGAGTGTGGTCGCACGTAT 58.544 50.000 8.72 2.77 43.61 3.06
426 427 0.170561 AGAGTGTGGTCGCACGTATC 59.829 55.000 8.72 2.50 43.61 2.24
427 428 0.170561 GAGTGTGGTCGCACGTATCT 59.829 55.000 8.72 0.00 43.61 1.98
428 429 0.109272 AGTGTGGTCGCACGTATCTG 60.109 55.000 8.72 0.00 43.61 2.90
429 430 0.109458 GTGTGGTCGCACGTATCTGA 60.109 55.000 0.00 0.00 0.00 3.27
430 431 0.815095 TGTGGTCGCACGTATCTGAT 59.185 50.000 0.00 0.00 0.00 2.90
431 432 2.018515 TGTGGTCGCACGTATCTGATA 58.981 47.619 0.00 0.00 0.00 2.15
432 433 2.424246 TGTGGTCGCACGTATCTGATAA 59.576 45.455 0.00 0.00 0.00 1.75
433 434 3.119424 TGTGGTCGCACGTATCTGATAAA 60.119 43.478 0.00 0.00 0.00 1.40
434 435 4.049186 GTGGTCGCACGTATCTGATAAAT 58.951 43.478 0.00 0.00 0.00 1.40
435 436 4.506654 GTGGTCGCACGTATCTGATAAATT 59.493 41.667 0.00 0.00 0.00 1.82
436 437 5.688621 GTGGTCGCACGTATCTGATAAATTA 59.311 40.000 0.00 0.00 0.00 1.40
437 438 6.199531 GTGGTCGCACGTATCTGATAAATTAA 59.800 38.462 0.00 0.00 0.00 1.40
438 439 6.757478 TGGTCGCACGTATCTGATAAATTAAA 59.243 34.615 0.00 0.00 0.00 1.52
439 440 7.278203 TGGTCGCACGTATCTGATAAATTAAAA 59.722 33.333 0.00 0.00 0.00 1.52
440 441 8.117988 GGTCGCACGTATCTGATAAATTAAAAA 58.882 33.333 0.00 0.00 0.00 1.94
441 442 9.646336 GTCGCACGTATCTGATAAATTAAAAAT 57.354 29.630 0.00 0.00 0.00 1.82
460 461 3.698029 ATCAACATTGTTATCGCAGGC 57.302 42.857 0.86 0.00 0.00 4.85
466 467 1.029408 TTGTTATCGCAGGCGGCATT 61.029 50.000 13.08 0.00 45.17 3.56
470 471 0.179070 TATCGCAGGCGGCATTGTAA 60.179 50.000 13.08 0.00 45.17 2.41
472 473 1.009675 CGCAGGCGGCATTGTAATC 60.010 57.895 13.08 0.00 45.17 1.75
474 475 0.029834 GCAGGCGGCATTGTAATCAG 59.970 55.000 13.08 0.00 43.97 2.90
475 476 1.667236 CAGGCGGCATTGTAATCAGA 58.333 50.000 13.08 0.00 0.00 3.27
477 478 2.620115 CAGGCGGCATTGTAATCAGAAT 59.380 45.455 13.08 0.00 0.00 2.40
479 480 3.815401 AGGCGGCATTGTAATCAGAATAC 59.185 43.478 13.08 0.00 0.00 1.89
496 501 7.315142 TCAGAATACAAAATTTGCAGATGGAC 58.685 34.615 5.52 0.00 0.00 4.02
498 503 7.062605 CAGAATACAAAATTTGCAGATGGACAC 59.937 37.037 5.52 0.00 0.00 3.67
500 505 2.988493 CAAAATTTGCAGATGGACACCG 59.012 45.455 0.00 0.00 0.00 4.94
504 509 0.320683 TTGCAGATGGACACCGACAG 60.321 55.000 0.00 0.00 0.00 3.51
518 523 1.626654 CGACAGCACAAAGGCCGTAG 61.627 60.000 0.00 0.00 0.00 3.51
522 527 0.951558 AGCACAAAGGCCGTAGTTTG 59.048 50.000 12.36 12.36 39.19 2.93
525 530 1.944024 CACAAAGGCCGTAGTTTGTCA 59.056 47.619 15.79 0.00 43.43 3.58
551 556 5.462398 CCTAGGCAGACACGATATTTTGTAC 59.538 44.000 0.00 0.00 0.00 2.90
552 557 3.863424 AGGCAGACACGATATTTTGTACG 59.137 43.478 0.00 0.00 0.00 3.67
553 558 3.615496 GGCAGACACGATATTTTGTACGT 59.385 43.478 0.00 0.00 39.53 3.57
554 559 4.799949 GGCAGACACGATATTTTGTACGTA 59.200 41.667 0.00 0.00 37.22 3.57
555 560 5.289193 GGCAGACACGATATTTTGTACGTAA 59.711 40.000 0.00 0.00 37.22 3.18
574 581 6.385537 CGTAATCGTCCCTATTTTAATCGG 57.614 41.667 0.00 0.00 0.00 4.18
595 602 2.592574 GGACAGCACAGCACAGCA 60.593 61.111 0.00 0.00 0.00 4.41
596 603 2.635899 GACAGCACAGCACAGCAC 59.364 61.111 0.00 0.00 0.00 4.40
599 606 2.593725 AGCACAGCACAGCACAGG 60.594 61.111 0.00 0.00 0.00 4.00
600 607 3.667282 GCACAGCACAGCACAGGG 61.667 66.667 0.00 0.00 0.00 4.45
601 608 2.981909 CACAGCACAGCACAGGGG 60.982 66.667 0.00 0.00 0.00 4.79
605 612 4.648626 GCACAGCACAGGGGAGCA 62.649 66.667 0.00 0.00 32.55 4.26
607 614 1.603842 CACAGCACAGGGGAGCATA 59.396 57.895 0.00 0.00 32.55 3.14
610 617 1.123077 CAGCACAGGGGAGCATACTA 58.877 55.000 0.00 0.00 32.55 1.82
611 618 1.123928 AGCACAGGGGAGCATACTAC 58.876 55.000 0.00 0.00 32.55 2.73
619 626 3.477210 GGGAGCATACTACCTCCTTTG 57.523 52.381 6.64 0.00 44.63 2.77
620 627 2.485657 GGGAGCATACTACCTCCTTTGC 60.486 54.545 6.64 0.00 44.63 3.68
621 628 2.485657 GGAGCATACTACCTCCTTTGCC 60.486 54.545 0.00 0.00 43.42 4.52
625 632 0.420272 TACTACCTCCTTTGCCCCCT 59.580 55.000 0.00 0.00 0.00 4.79
700 707 0.101759 GCAAGCGATACACCCTCGTA 59.898 55.000 0.00 0.00 38.37 3.43
722 729 7.222031 TCGTAGGATGATGACTTGATTTTTACG 59.778 37.037 0.00 0.00 0.00 3.18
727 734 7.148407 GGATGATGACTTGATTTTTACGACTGT 60.148 37.037 0.00 0.00 0.00 3.55
728 735 7.490962 TGATGACTTGATTTTTACGACTGTT 57.509 32.000 0.00 0.00 0.00 3.16
729 736 7.925993 TGATGACTTGATTTTTACGACTGTTT 58.074 30.769 0.00 0.00 0.00 2.83
819 861 1.379309 GCTCCTCCCTCGTCTGACT 60.379 63.158 6.21 0.00 0.00 3.41
846 888 4.415501 GACGCGACGCAACAGCAG 62.416 66.667 21.35 3.75 0.00 4.24
860 902 4.567385 GCAGGAGCGAGAGAGCGG 62.567 72.222 0.00 0.00 43.00 5.52
861 903 3.898509 CAGGAGCGAGAGAGCGGG 61.899 72.222 0.00 0.00 43.00 6.13
946 988 1.757699 CAGGGAAGTCTGGTAGTAGCC 59.242 57.143 0.00 0.00 0.00 3.93
947 989 1.646977 AGGGAAGTCTGGTAGTAGCCT 59.353 52.381 0.00 0.00 0.00 4.58
948 990 2.857498 AGGGAAGTCTGGTAGTAGCCTA 59.143 50.000 0.00 0.00 0.00 3.93
949 991 3.117436 AGGGAAGTCTGGTAGTAGCCTAG 60.117 52.174 0.00 0.00 0.00 3.02
1148 1194 1.723288 CCCCTCCTCAGATCCCTAAC 58.277 60.000 0.00 0.00 0.00 2.34
1189 1235 1.284657 CCGATCACTCATCACTGTGC 58.715 55.000 2.12 0.00 34.49 4.57
1193 1239 0.321034 TCACTCATCACTGTGCCTGC 60.321 55.000 2.12 0.00 34.49 4.85
1195 1241 2.046988 TCATCACTGTGCCTGCGG 60.047 61.111 2.12 0.00 0.00 5.69
1231 1293 3.172229 GCGATTAGCTTCTTCAGTCCT 57.828 47.619 0.00 0.00 44.04 3.85
1233 1295 3.452474 CGATTAGCTTCTTCAGTCCTGG 58.548 50.000 0.00 0.00 0.00 4.45
1237 1299 0.676151 GCTTCTTCAGTCCTGGCCTG 60.676 60.000 3.32 2.54 0.00 4.85
1238 1300 0.979665 CTTCTTCAGTCCTGGCCTGA 59.020 55.000 11.88 2.77 37.18 3.86
1249 1317 4.265056 GGCCTGACCCGTGTTGGT 62.265 66.667 0.00 0.00 42.79 3.67
1261 1329 1.545841 GTGTTGGTTTGGGGGATCTC 58.454 55.000 0.00 0.00 0.00 2.75
1278 1346 2.975266 TCTCTAGTCCGAGTGAGTGAC 58.025 52.381 0.00 0.00 32.83 3.67
1307 1375 1.191489 TCGCCTGTTCTGTGATCCCA 61.191 55.000 0.00 0.00 0.00 4.37
1343 1411 1.380403 ATCGTCTCGTCTGCTGGAGG 61.380 60.000 0.00 0.00 0.00 4.30
1377 1450 4.158764 AGAATGTGTCCTCTCGACCTAAAG 59.841 45.833 0.00 0.00 41.18 1.85
1378 1451 1.544691 TGTGTCCTCTCGACCTAAAGC 59.455 52.381 0.00 0.00 41.18 3.51
1399 1472 0.462047 GGGTGGAGTAGATTGCGTGG 60.462 60.000 0.00 0.00 0.00 4.94
1402 1475 2.423577 GTGGAGTAGATTGCGTGGTTT 58.576 47.619 0.00 0.00 0.00 3.27
1440 1515 7.357303 TGTTTTCTTACAGCCGATTTACTTTC 58.643 34.615 0.00 0.00 0.00 2.62
1447 1522 3.127030 CAGCCGATTTACTTTCTTGGTCC 59.873 47.826 0.00 0.00 0.00 4.46
1450 1525 4.157840 GCCGATTTACTTTCTTGGTCCATT 59.842 41.667 0.00 0.00 0.00 3.16
1458 1533 3.703001 TTCTTGGTCCATTCAGAGTCC 57.297 47.619 0.00 0.00 0.00 3.85
1483 1558 1.356624 GTATTGCCAGCCGTGATGC 59.643 57.895 0.00 0.00 0.00 3.91
1535 1644 2.476352 CGTCACAGTCGTTCTGATCGAT 60.476 50.000 13.26 0.00 46.27 3.59
1539 1648 4.816925 TCACAGTCGTTCTGATCGATATCT 59.183 41.667 13.26 4.44 46.27 1.98
1556 1665 7.896811 TCGATATCTATGTTTGCTGTCCTAAT 58.103 34.615 0.34 0.00 0.00 1.73
1580 1689 4.125703 GGACAGTGGAATGATGTCTCATC 58.874 47.826 4.73 3.16 41.34 2.92
1598 1712 7.730332 TGTCTCATCTGCCCTATTTAGAATCTA 59.270 37.037 0.00 0.00 0.00 1.98
1599 1713 8.589338 GTCTCATCTGCCCTATTTAGAATCTAA 58.411 37.037 0.00 0.00 0.00 2.10
1627 1741 3.769739 TGTGCAAGTATTCTGACCAGT 57.230 42.857 0.00 0.00 0.00 4.00
1642 1756 6.136857 TCTGACCAGTATATCAGGCTAGTTT 58.863 40.000 1.66 0.00 42.25 2.66
1650 1764 9.817809 CAGTATATCAGGCTAGTTTTGAACTTA 57.182 33.333 0.00 0.00 42.81 2.24
1661 1776 6.609237 AGTTTTGAACTTAGTTTCGTACCC 57.391 37.500 0.00 0.00 39.04 3.69
1720 1864 6.249192 TCTCATCTAAAGTCTGTCTTGAGGA 58.751 40.000 0.13 0.00 35.76 3.71
1755 1899 1.615392 GGCAGGTTCAGTTTGAGCATT 59.385 47.619 0.00 0.00 28.47 3.56
1779 1923 2.880268 CTGAAACAGTCATCACCTGCAA 59.120 45.455 0.00 0.00 35.07 4.08
1907 2058 1.981256 AGTTGTTTCTGGCAACCGAT 58.019 45.000 4.78 0.00 45.14 4.18
1910 2061 1.686355 TGTTTCTGGCAACCGATTGT 58.314 45.000 0.00 0.00 38.17 2.71
1958 2109 2.421424 CCTCAACATTAAGCAGCCACTC 59.579 50.000 0.00 0.00 0.00 3.51
1967 2118 1.815421 GCAGCCACTCATACCGGTG 60.815 63.158 19.93 1.91 0.00 4.94
1992 2143 2.548067 CCCACGAGTATGCCACTTATCC 60.548 54.545 0.00 0.00 37.72 2.59
1998 2149 4.443394 CGAGTATGCCACTTATCCGTTTAC 59.557 45.833 0.00 0.00 37.72 2.01
1999 2150 5.598769 GAGTATGCCACTTATCCGTTTACT 58.401 41.667 0.00 0.00 37.72 2.24
2019 2170 0.443869 CTCTGCCGGTTCGAATGTTG 59.556 55.000 1.90 0.00 0.00 3.33
2075 2234 8.296713 TGACTTAATATCCTCTTGTTTGTTTGC 58.703 33.333 0.00 0.00 0.00 3.68
2076 2235 8.409358 ACTTAATATCCTCTTGTTTGTTTGCT 57.591 30.769 0.00 0.00 0.00 3.91
2077 2236 8.860088 ACTTAATATCCTCTTGTTTGTTTGCTT 58.140 29.630 0.00 0.00 0.00 3.91
2078 2237 9.132521 CTTAATATCCTCTTGTTTGTTTGCTTG 57.867 33.333 0.00 0.00 0.00 4.01
2079 2238 6.655078 ATATCCTCTTGTTTGTTTGCTTGT 57.345 33.333 0.00 0.00 0.00 3.16
2080 2239 4.799564 TCCTCTTGTTTGTTTGCTTGTT 57.200 36.364 0.00 0.00 0.00 2.83
2081 2240 5.146010 TCCTCTTGTTTGTTTGCTTGTTT 57.854 34.783 0.00 0.00 0.00 2.83
2082 2241 4.928615 TCCTCTTGTTTGTTTGCTTGTTTG 59.071 37.500 0.00 0.00 0.00 2.93
2154 2313 3.711086 TGATTAGCTGCGAAGATGTCTC 58.289 45.455 0.00 0.00 0.00 3.36
2261 2420 2.691409 TCTCCCGGTTTGACATCATC 57.309 50.000 0.00 0.00 0.00 2.92
2423 2582 2.325583 ACCTTGTCTCACGCAAGAAA 57.674 45.000 6.62 0.00 44.29 2.52
2492 2651 2.012673 GGGATGACTGTTGATGCTGTC 58.987 52.381 0.00 0.00 37.68 3.51
2495 2654 1.501169 TGACTGTTGATGCTGTCACG 58.499 50.000 0.00 0.00 40.63 4.35
2759 2918 1.296715 GATGTTCCCTGTGAGCGGT 59.703 57.895 0.00 0.00 0.00 5.68
2810 2969 3.077907 CCCGTGATGTTCCCTGGT 58.922 61.111 0.00 0.00 0.00 4.00
2999 3158 1.145119 GAGTGGGAAGGGGTGAAAGTT 59.855 52.381 0.00 0.00 0.00 2.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.493320 ACGAGAACGGCAATTATACATTTTAGA 59.507 33.333 0.00 0.00 44.46 2.10
1 2 7.627340 ACGAGAACGGCAATTATACATTTTAG 58.373 34.615 0.00 0.00 44.46 1.85
2 3 7.542534 ACGAGAACGGCAATTATACATTTTA 57.457 32.000 0.00 0.00 44.46 1.52
5 6 6.431198 AAACGAGAACGGCAATTATACATT 57.569 33.333 0.00 0.00 44.46 2.71
7 8 5.640357 AGAAAACGAGAACGGCAATTATACA 59.360 36.000 0.00 0.00 44.46 2.29
8 9 6.103222 AGAAAACGAGAACGGCAATTATAC 57.897 37.500 0.00 0.00 44.46 1.47
9 10 6.730960 AAGAAAACGAGAACGGCAATTATA 57.269 33.333 0.00 0.00 44.46 0.98
10 11 5.622770 AAGAAAACGAGAACGGCAATTAT 57.377 34.783 0.00 0.00 44.46 1.28
11 12 5.209240 CAAAGAAAACGAGAACGGCAATTA 58.791 37.500 0.00 0.00 44.46 1.40
12 13 3.982576 AAGAAAACGAGAACGGCAATT 57.017 38.095 0.00 0.00 44.46 2.32
13 14 3.550030 CCAAAGAAAACGAGAACGGCAAT 60.550 43.478 0.00 0.00 44.46 3.56
14 15 2.223386 CCAAAGAAAACGAGAACGGCAA 60.223 45.455 0.00 0.00 44.46 4.52
15 16 1.332375 CCAAAGAAAACGAGAACGGCA 59.668 47.619 0.00 0.00 44.46 5.69
16 17 1.332686 ACCAAAGAAAACGAGAACGGC 59.667 47.619 0.00 0.00 44.46 5.68
17 18 2.032290 GGACCAAAGAAAACGAGAACGG 60.032 50.000 0.00 0.00 44.46 4.44
18 19 2.870411 AGGACCAAAGAAAACGAGAACG 59.130 45.455 0.00 0.00 45.75 3.95
19 20 5.055144 AGTAGGACCAAAGAAAACGAGAAC 58.945 41.667 0.00 0.00 0.00 3.01
20 21 5.286267 AGTAGGACCAAAGAAAACGAGAA 57.714 39.130 0.00 0.00 0.00 2.87
21 22 4.950205 AGTAGGACCAAAGAAAACGAGA 57.050 40.909 0.00 0.00 0.00 4.04
22 23 7.097834 AGAATAGTAGGACCAAAGAAAACGAG 58.902 38.462 0.00 0.00 0.00 4.18
23 24 7.001099 AGAATAGTAGGACCAAAGAAAACGA 57.999 36.000 0.00 0.00 0.00 3.85
24 25 8.654215 GTTAGAATAGTAGGACCAAAGAAAACG 58.346 37.037 0.00 0.00 0.00 3.60
25 26 9.498176 TGTTAGAATAGTAGGACCAAAGAAAAC 57.502 33.333 0.00 0.00 0.00 2.43
28 29 9.720769 CTTTGTTAGAATAGTAGGACCAAAGAA 57.279 33.333 0.00 0.00 0.00 2.52
29 30 9.096823 TCTTTGTTAGAATAGTAGGACCAAAGA 57.903 33.333 0.00 0.00 33.28 2.52
30 31 9.892130 ATCTTTGTTAGAATAGTAGGACCAAAG 57.108 33.333 0.00 0.00 36.22 2.77
33 34 9.667107 CAAATCTTTGTTAGAATAGTAGGACCA 57.333 33.333 0.00 0.00 36.22 4.02
34 35 9.886132 TCAAATCTTTGTTAGAATAGTAGGACC 57.114 33.333 2.82 0.00 39.18 4.46
52 53 9.645128 TGGATACATGGTAATTCATCAAATCTT 57.355 29.630 0.00 0.00 46.17 2.40
72 73 4.695217 TTTCTTCAACGGCATTGGATAC 57.305 40.909 0.00 0.00 38.98 2.24
73 74 5.913137 ATTTTCTTCAACGGCATTGGATA 57.087 34.783 0.00 0.00 38.98 2.59
74 75 4.806640 ATTTTCTTCAACGGCATTGGAT 57.193 36.364 0.00 0.00 38.98 3.41
75 76 5.713792 TTATTTTCTTCAACGGCATTGGA 57.286 34.783 0.00 0.00 38.98 3.53
76 77 6.777526 TTTTATTTTCTTCAACGGCATTGG 57.222 33.333 0.00 0.00 38.98 3.16
97 98 7.903995 TTTCAGACACATTTCTTTGCTTTTT 57.096 28.000 0.00 0.00 0.00 1.94
98 99 7.765360 TGATTTCAGACACATTTCTTTGCTTTT 59.235 29.630 0.00 0.00 0.00 2.27
99 100 7.267128 TGATTTCAGACACATTTCTTTGCTTT 58.733 30.769 0.00 0.00 0.00 3.51
100 101 6.808829 TGATTTCAGACACATTTCTTTGCTT 58.191 32.000 0.00 0.00 0.00 3.91
101 102 6.395426 TGATTTCAGACACATTTCTTTGCT 57.605 33.333 0.00 0.00 0.00 3.91
102 103 7.467557 TTTGATTTCAGACACATTTCTTTGC 57.532 32.000 0.00 0.00 0.00 3.68
103 104 9.858247 CATTTTGATTTCAGACACATTTCTTTG 57.142 29.630 0.00 0.00 0.00 2.77
104 105 8.553696 GCATTTTGATTTCAGACACATTTCTTT 58.446 29.630 0.00 0.00 0.00 2.52
105 106 7.711772 TGCATTTTGATTTCAGACACATTTCTT 59.288 29.630 0.00 0.00 0.00 2.52
106 107 7.211573 TGCATTTTGATTTCAGACACATTTCT 58.788 30.769 0.00 0.00 0.00 2.52
107 108 7.410800 TGCATTTTGATTTCAGACACATTTC 57.589 32.000 0.00 0.00 0.00 2.17
108 109 7.789273 TTGCATTTTGATTTCAGACACATTT 57.211 28.000 0.00 0.00 0.00 2.32
109 110 7.789273 TTTGCATTTTGATTTCAGACACATT 57.211 28.000 0.00 0.00 0.00 2.71
110 111 7.972832 ATTTGCATTTTGATTTCAGACACAT 57.027 28.000 0.00 0.00 0.00 3.21
111 112 7.789273 AATTTGCATTTTGATTTCAGACACA 57.211 28.000 0.00 0.00 0.00 3.72
112 113 8.981647 AGTAATTTGCATTTTGATTTCAGACAC 58.018 29.630 0.00 0.00 0.00 3.67
113 114 8.980610 CAGTAATTTGCATTTTGATTTCAGACA 58.019 29.630 0.00 0.00 0.00 3.41
114 115 9.195411 TCAGTAATTTGCATTTTGATTTCAGAC 57.805 29.630 0.00 0.00 0.00 3.51
115 116 9.195411 GTCAGTAATTTGCATTTTGATTTCAGA 57.805 29.630 0.00 0.00 0.00 3.27
116 117 9.199982 AGTCAGTAATTTGCATTTTGATTTCAG 57.800 29.630 0.00 0.00 0.00 3.02
117 118 9.545105 AAGTCAGTAATTTGCATTTTGATTTCA 57.455 25.926 0.00 0.00 0.00 2.69
120 121 8.702438 CGAAAGTCAGTAATTTGCATTTTGATT 58.298 29.630 0.00 0.00 0.00 2.57
121 122 7.329226 CCGAAAGTCAGTAATTTGCATTTTGAT 59.671 33.333 0.00 0.00 0.00 2.57
122 123 6.640499 CCGAAAGTCAGTAATTTGCATTTTGA 59.360 34.615 0.00 0.00 0.00 2.69
123 124 6.616260 GCCGAAAGTCAGTAATTTGCATTTTG 60.616 38.462 0.00 0.00 0.00 2.44
124 125 5.405269 GCCGAAAGTCAGTAATTTGCATTTT 59.595 36.000 0.00 0.00 0.00 1.82
125 126 4.923281 GCCGAAAGTCAGTAATTTGCATTT 59.077 37.500 0.00 0.00 0.00 2.32
126 127 4.485163 GCCGAAAGTCAGTAATTTGCATT 58.515 39.130 0.00 0.00 0.00 3.56
127 128 3.119495 GGCCGAAAGTCAGTAATTTGCAT 60.119 43.478 0.00 0.00 0.00 3.96
128 129 2.227865 GGCCGAAAGTCAGTAATTTGCA 59.772 45.455 0.00 0.00 0.00 4.08
129 130 2.415491 GGGCCGAAAGTCAGTAATTTGC 60.415 50.000 0.00 0.00 0.00 3.68
130 131 2.159572 CGGGCCGAAAGTCAGTAATTTG 60.160 50.000 24.41 0.00 0.00 2.32
131 132 2.081462 CGGGCCGAAAGTCAGTAATTT 58.919 47.619 24.41 0.00 0.00 1.82
132 133 1.677820 CCGGGCCGAAAGTCAGTAATT 60.678 52.381 30.79 0.00 0.00 1.40
133 134 0.107848 CCGGGCCGAAAGTCAGTAAT 60.108 55.000 30.79 0.00 0.00 1.89
134 135 1.294138 CCGGGCCGAAAGTCAGTAA 59.706 57.895 30.79 0.00 0.00 2.24
135 136 2.975536 CCGGGCCGAAAGTCAGTA 59.024 61.111 30.79 0.00 0.00 2.74
136 137 4.699522 GCCGGGCCGAAAGTCAGT 62.700 66.667 30.79 0.00 0.00 3.41
154 155 3.423154 CAAAGCAGACCCGTCCGC 61.423 66.667 0.00 0.00 33.38 5.54
155 156 3.423154 GCAAAGCAGACCCGTCCG 61.423 66.667 0.00 0.00 0.00 4.79
156 157 3.423154 CGCAAAGCAGACCCGTCC 61.423 66.667 0.00 0.00 0.00 4.79
157 158 2.357034 TCGCAAAGCAGACCCGTC 60.357 61.111 0.00 0.00 0.00 4.79
158 159 2.357517 CTCGCAAAGCAGACCCGT 60.358 61.111 0.00 0.00 0.00 5.28
159 160 3.121030 CCTCGCAAAGCAGACCCG 61.121 66.667 0.00 0.00 0.00 5.28
160 161 2.032681 ACCTCGCAAAGCAGACCC 59.967 61.111 0.00 0.00 0.00 4.46
161 162 1.004440 AGACCTCGCAAAGCAGACC 60.004 57.895 0.00 0.00 0.00 3.85
162 163 1.905922 GCAGACCTCGCAAAGCAGAC 61.906 60.000 0.00 0.00 0.00 3.51
163 164 1.669115 GCAGACCTCGCAAAGCAGA 60.669 57.895 0.00 0.00 0.00 4.26
164 165 1.633852 GAGCAGACCTCGCAAAGCAG 61.634 60.000 0.00 0.00 0.00 4.24
165 166 1.669115 GAGCAGACCTCGCAAAGCA 60.669 57.895 0.00 0.00 0.00 3.91
166 167 3.172919 GAGCAGACCTCGCAAAGC 58.827 61.111 0.00 0.00 0.00 3.51
173 174 4.500116 GACGGCCGAGCAGACCTC 62.500 72.222 35.90 12.84 37.22 3.85
199 200 4.770874 AACCGGATTCGTGGGCCG 62.771 66.667 9.46 0.00 44.42 6.13
200 201 1.929806 GAAAACCGGATTCGTGGGCC 61.930 60.000 9.46 0.00 33.95 5.80
201 202 1.504900 GAAAACCGGATTCGTGGGC 59.495 57.895 9.46 0.00 33.95 5.36
202 203 1.641123 CGGAAAACCGGATTCGTGGG 61.641 60.000 9.46 0.00 33.95 4.61
203 204 1.791662 CGGAAAACCGGATTCGTGG 59.208 57.895 9.46 1.91 33.95 4.94
204 205 1.133869 GCGGAAAACCGGATTCGTG 59.866 57.895 9.46 9.51 33.95 4.35
205 206 2.385091 CGCGGAAAACCGGATTCGT 61.385 57.895 9.46 0.00 33.95 3.85
206 207 1.628447 TTCGCGGAAAACCGGATTCG 61.628 55.000 9.46 4.59 0.00 3.34
207 208 0.730840 ATTCGCGGAAAACCGGATTC 59.269 50.000 9.46 12.46 0.00 2.52
208 209 1.135517 CAATTCGCGGAAAACCGGATT 60.136 47.619 9.46 0.00 33.19 3.01
209 210 0.450184 CAATTCGCGGAAAACCGGAT 59.550 50.000 9.46 0.00 0.00 4.18
210 211 0.885596 ACAATTCGCGGAAAACCGGA 60.886 50.000 9.46 3.74 0.00 5.14
211 212 0.797542 TACAATTCGCGGAAAACCGG 59.202 50.000 6.13 0.00 0.00 5.28
212 213 2.598000 TTACAATTCGCGGAAAACCG 57.402 45.000 6.13 4.21 0.00 4.44
213 214 2.653113 CGTTTACAATTCGCGGAAAACC 59.347 45.455 6.13 0.00 0.00 3.27
214 215 2.087905 GCGTTTACAATTCGCGGAAAAC 59.912 45.455 6.13 4.12 40.51 2.43
215 216 2.308811 GCGTTTACAATTCGCGGAAAA 58.691 42.857 6.13 0.00 40.51 2.29
216 217 1.953113 GCGTTTACAATTCGCGGAAA 58.047 45.000 6.13 0.00 40.51 3.13
217 218 3.661229 GCGTTTACAATTCGCGGAA 57.339 47.368 6.13 0.00 40.51 4.30
234 235 0.954938 AATGCCAACCCGCAAAATGC 60.955 50.000 0.00 0.00 43.24 3.56
235 236 2.376808 TAATGCCAACCCGCAAAATG 57.623 45.000 0.00 0.00 43.24 2.32
236 237 3.490078 CGTATAATGCCAACCCGCAAAAT 60.490 43.478 0.00 0.00 43.24 1.82
237 238 2.159366 CGTATAATGCCAACCCGCAAAA 60.159 45.455 0.00 0.00 43.24 2.44
238 239 1.402259 CGTATAATGCCAACCCGCAAA 59.598 47.619 0.00 0.00 43.24 3.68
239 240 1.018148 CGTATAATGCCAACCCGCAA 58.982 50.000 0.00 0.00 43.24 4.85
240 241 0.816018 CCGTATAATGCCAACCCGCA 60.816 55.000 0.00 0.00 44.35 5.69
241 242 1.512156 CCCGTATAATGCCAACCCGC 61.512 60.000 0.00 0.00 0.00 6.13
242 243 0.887387 CCCCGTATAATGCCAACCCG 60.887 60.000 0.00 0.00 0.00 5.28
243 244 0.184211 ACCCCGTATAATGCCAACCC 59.816 55.000 0.00 0.00 0.00 4.11
244 245 1.142262 AGACCCCGTATAATGCCAACC 59.858 52.381 0.00 0.00 0.00 3.77
245 246 2.218603 CAGACCCCGTATAATGCCAAC 58.781 52.381 0.00 0.00 0.00 3.77
246 247 1.476110 GCAGACCCCGTATAATGCCAA 60.476 52.381 0.00 0.00 0.00 4.52
247 248 0.107831 GCAGACCCCGTATAATGCCA 59.892 55.000 0.00 0.00 0.00 4.92
248 249 0.396811 AGCAGACCCCGTATAATGCC 59.603 55.000 0.00 0.00 34.24 4.40
249 250 2.561419 TCTAGCAGACCCCGTATAATGC 59.439 50.000 0.00 0.00 0.00 3.56
250 251 4.079970 TCTCTAGCAGACCCCGTATAATG 58.920 47.826 0.00 0.00 0.00 1.90
251 252 4.383931 TCTCTAGCAGACCCCGTATAAT 57.616 45.455 0.00 0.00 0.00 1.28
252 253 3.870538 TCTCTAGCAGACCCCGTATAA 57.129 47.619 0.00 0.00 0.00 0.98
253 254 3.687125 CATCTCTAGCAGACCCCGTATA 58.313 50.000 0.00 0.00 32.26 1.47
254 255 2.520069 CATCTCTAGCAGACCCCGTAT 58.480 52.381 0.00 0.00 32.26 3.06
255 256 1.982660 CATCTCTAGCAGACCCCGTA 58.017 55.000 0.00 0.00 32.26 4.02
256 257 1.395826 GCATCTCTAGCAGACCCCGT 61.396 60.000 0.00 0.00 32.26 5.28
257 258 1.365633 GCATCTCTAGCAGACCCCG 59.634 63.158 0.00 0.00 32.26 5.73
258 259 1.050988 TGGCATCTCTAGCAGACCCC 61.051 60.000 0.00 0.00 32.26 4.95
259 260 1.055040 ATGGCATCTCTAGCAGACCC 58.945 55.000 0.00 0.00 32.26 4.46
260 261 2.233431 CCTATGGCATCTCTAGCAGACC 59.767 54.545 1.65 0.00 32.26 3.85
261 262 2.233431 CCCTATGGCATCTCTAGCAGAC 59.767 54.545 1.65 0.00 32.26 3.51
262 263 2.110721 TCCCTATGGCATCTCTAGCAGA 59.889 50.000 1.65 0.00 34.78 4.26
263 264 2.233431 GTCCCTATGGCATCTCTAGCAG 59.767 54.545 1.65 0.00 0.00 4.24
264 265 2.251818 GTCCCTATGGCATCTCTAGCA 58.748 52.381 1.65 0.00 0.00 3.49
265 266 1.552792 GGTCCCTATGGCATCTCTAGC 59.447 57.143 1.65 0.00 0.00 3.42
266 267 2.894731 TGGTCCCTATGGCATCTCTAG 58.105 52.381 1.65 0.00 0.00 2.43
267 268 3.567375 ATGGTCCCTATGGCATCTCTA 57.433 47.619 1.65 0.00 0.00 2.43
268 269 2.429933 ATGGTCCCTATGGCATCTCT 57.570 50.000 1.65 0.00 0.00 3.10
269 270 3.054802 CCTAATGGTCCCTATGGCATCTC 60.055 52.174 1.65 0.00 0.00 2.75
270 271 2.915604 CCTAATGGTCCCTATGGCATCT 59.084 50.000 1.65 0.00 0.00 2.90
271 272 2.025887 CCCTAATGGTCCCTATGGCATC 60.026 54.545 1.65 0.00 0.00 3.91
272 273 1.995542 CCCTAATGGTCCCTATGGCAT 59.004 52.381 4.88 4.88 0.00 4.40
273 274 1.444933 CCCTAATGGTCCCTATGGCA 58.555 55.000 0.00 0.00 0.00 4.92
274 275 0.698818 CCCCTAATGGTCCCTATGGC 59.301 60.000 0.00 0.00 0.00 4.40
275 276 0.698818 GCCCCTAATGGTCCCTATGG 59.301 60.000 0.00 0.00 0.00 2.74
276 277 1.444933 TGCCCCTAATGGTCCCTATG 58.555 55.000 0.00 0.00 0.00 2.23
277 278 2.065799 CTTGCCCCTAATGGTCCCTAT 58.934 52.381 0.00 0.00 0.00 2.57
278 279 1.518367 CTTGCCCCTAATGGTCCCTA 58.482 55.000 0.00 0.00 0.00 3.53
279 280 1.937924 GCTTGCCCCTAATGGTCCCT 61.938 60.000 0.00 0.00 0.00 4.20
280 281 1.455773 GCTTGCCCCTAATGGTCCC 60.456 63.158 0.00 0.00 0.00 4.46
281 282 1.455773 GGCTTGCCCCTAATGGTCC 60.456 63.158 0.00 0.00 0.00 4.46
282 283 1.037579 GTGGCTTGCCCCTAATGGTC 61.038 60.000 9.35 0.00 0.00 4.02
283 284 1.000359 GTGGCTTGCCCCTAATGGT 60.000 57.895 9.35 0.00 0.00 3.55
284 285 1.758122 GGTGGCTTGCCCCTAATGG 60.758 63.158 9.35 0.00 0.00 3.16
285 286 2.120909 CGGTGGCTTGCCCCTAATG 61.121 63.158 9.35 0.00 0.00 1.90
286 287 2.275418 CGGTGGCTTGCCCCTAAT 59.725 61.111 9.35 0.00 0.00 1.73
287 288 4.733542 GCGGTGGCTTGCCCCTAA 62.734 66.667 9.35 0.00 35.83 2.69
292 293 3.129913 GATCATGCGGTGGCTTGCC 62.130 63.158 4.43 4.43 42.37 4.52
293 294 1.936436 TTGATCATGCGGTGGCTTGC 61.936 55.000 0.00 0.00 42.37 4.01
294 295 0.099968 CTTGATCATGCGGTGGCTTG 59.900 55.000 0.00 0.00 43.59 4.01
295 296 1.033746 CCTTGATCATGCGGTGGCTT 61.034 55.000 0.00 0.00 40.82 4.35
296 297 1.452651 CCTTGATCATGCGGTGGCT 60.453 57.895 0.00 0.00 40.82 4.75
297 298 3.113745 CCTTGATCATGCGGTGGC 58.886 61.111 0.00 0.00 40.52 5.01
298 299 1.750018 TGCCTTGATCATGCGGTGG 60.750 57.895 11.72 3.19 0.00 4.61
299 300 1.307355 TGTGCCTTGATCATGCGGTG 61.307 55.000 11.72 0.00 0.00 4.94
300 301 1.002257 TGTGCCTTGATCATGCGGT 60.002 52.632 11.72 0.00 0.00 5.68
301 302 1.430632 GTGTGCCTTGATCATGCGG 59.569 57.895 11.72 7.35 0.00 5.69
302 303 1.028330 AGGTGTGCCTTGATCATGCG 61.028 55.000 11.72 3.81 44.18 4.73
303 304 2.877975 AGGTGTGCCTTGATCATGC 58.122 52.632 10.06 10.06 44.18 4.06
328 329 4.526970 CCTAAGCAGGATGGCTCTAAAAA 58.473 43.478 0.00 0.00 45.91 1.94
329 330 3.685550 GCCTAAGCAGGATGGCTCTAAAA 60.686 47.826 0.00 0.00 45.91 1.52
330 331 2.158755 GCCTAAGCAGGATGGCTCTAAA 60.159 50.000 0.00 0.00 45.91 1.85
331 332 1.417890 GCCTAAGCAGGATGGCTCTAA 59.582 52.381 0.00 0.00 45.91 2.10
332 333 1.051812 GCCTAAGCAGGATGGCTCTA 58.948 55.000 0.00 0.00 45.91 2.43
333 334 1.704007 GGCCTAAGCAGGATGGCTCT 61.704 60.000 0.00 0.00 45.91 4.09
334 335 1.228094 GGCCTAAGCAGGATGGCTC 60.228 63.158 0.00 0.00 45.91 4.70
335 336 2.761465 GGGCCTAAGCAGGATGGCT 61.761 63.158 0.84 0.00 45.91 4.75
336 337 2.203408 GGGCCTAAGCAGGATGGC 60.203 66.667 0.84 0.00 45.91 4.40
337 338 0.033208 TTTGGGCCTAAGCAGGATGG 60.033 55.000 4.53 0.00 45.91 3.51
338 339 1.959282 GATTTGGGCCTAAGCAGGATG 59.041 52.381 11.06 0.00 45.91 3.51
339 340 1.477558 CGATTTGGGCCTAAGCAGGAT 60.478 52.381 15.78 0.00 45.91 3.24
340 341 0.107214 CGATTTGGGCCTAAGCAGGA 60.107 55.000 15.78 0.00 45.91 3.86
341 342 0.107214 TCGATTTGGGCCTAAGCAGG 60.107 55.000 15.78 1.08 45.77 4.85
342 343 1.750193 TTCGATTTGGGCCTAAGCAG 58.250 50.000 15.78 8.69 42.56 4.24
343 344 2.435372 ATTCGATTTGGGCCTAAGCA 57.565 45.000 15.78 0.00 42.56 3.91
344 345 5.453567 AATTATTCGATTTGGGCCTAAGC 57.546 39.130 4.53 5.30 38.76 3.09
345 346 7.277174 AGAAATTATTCGATTTGGGCCTAAG 57.723 36.000 4.53 0.00 40.63 2.18
346 347 7.654022 AAGAAATTATTCGATTTGGGCCTAA 57.346 32.000 4.53 3.27 40.63 2.69
347 348 7.123547 ACAAAGAAATTATTCGATTTGGGCCTA 59.876 33.333 4.53 0.00 40.63 3.93
348 349 6.070824 ACAAAGAAATTATTCGATTTGGGCCT 60.071 34.615 4.53 0.00 40.63 5.19
349 350 6.035975 CACAAAGAAATTATTCGATTTGGGCC 59.964 38.462 0.00 0.00 40.63 5.80
350 351 6.035975 CCACAAAGAAATTATTCGATTTGGGC 59.964 38.462 8.29 0.00 40.63 5.36
351 352 6.035975 GCCACAAAGAAATTATTCGATTTGGG 59.964 38.462 8.29 4.49 40.63 4.12
352 353 6.589523 TGCCACAAAGAAATTATTCGATTTGG 59.410 34.615 8.29 0.00 40.63 3.28
353 354 7.579589 TGCCACAAAGAAATTATTCGATTTG 57.420 32.000 3.07 3.07 40.63 2.32
354 355 9.868277 TTATGCCACAAAGAAATTATTCGATTT 57.132 25.926 0.00 0.00 40.63 2.17
355 356 9.868277 TTTATGCCACAAAGAAATTATTCGATT 57.132 25.926 0.00 0.00 40.63 3.34
356 357 9.868277 TTTTATGCCACAAAGAAATTATTCGAT 57.132 25.926 0.00 0.00 40.63 3.59
357 358 9.698309 TTTTTATGCCACAAAGAAATTATTCGA 57.302 25.926 0.00 0.00 40.63 3.71
380 381 1.063266 TCTCTGGCACCAAGGGTTTTT 60.063 47.619 0.00 0.00 31.02 1.94
381 382 0.555769 TCTCTGGCACCAAGGGTTTT 59.444 50.000 0.00 0.00 31.02 2.43
382 383 0.111253 CTCTCTGGCACCAAGGGTTT 59.889 55.000 0.00 0.00 31.02 3.27
383 384 0.768221 TCTCTCTGGCACCAAGGGTT 60.768 55.000 0.00 0.00 31.02 4.11
384 385 1.152030 TCTCTCTGGCACCAAGGGT 60.152 57.895 0.00 0.00 35.62 4.34
385 386 1.298014 GTCTCTCTGGCACCAAGGG 59.702 63.158 0.00 0.00 0.00 3.95
386 387 1.197430 AGGTCTCTCTGGCACCAAGG 61.197 60.000 0.00 0.00 31.99 3.61
387 388 0.689623 AAGGTCTCTCTGGCACCAAG 59.310 55.000 0.00 0.00 31.99 3.61
388 389 1.902508 CTAAGGTCTCTCTGGCACCAA 59.097 52.381 0.00 0.00 31.99 3.67
389 390 1.077169 TCTAAGGTCTCTCTGGCACCA 59.923 52.381 0.00 0.00 31.99 4.17
390 391 1.754226 CTCTAAGGTCTCTCTGGCACC 59.246 57.143 0.00 0.00 0.00 5.01
391 392 2.165437 CACTCTAAGGTCTCTCTGGCAC 59.835 54.545 0.00 0.00 0.00 5.01
392 393 2.225142 ACACTCTAAGGTCTCTCTGGCA 60.225 50.000 0.00 0.00 0.00 4.92
393 394 2.165437 CACACTCTAAGGTCTCTCTGGC 59.835 54.545 0.00 0.00 0.00 4.85
394 395 2.757868 CCACACTCTAAGGTCTCTCTGG 59.242 54.545 0.00 0.00 0.00 3.86
395 396 3.426615 ACCACACTCTAAGGTCTCTCTG 58.573 50.000 0.00 0.00 0.00 3.35
396 397 3.692690 GACCACACTCTAAGGTCTCTCT 58.307 50.000 0.00 0.00 46.45 3.10
401 402 0.601558 TGCGACCACACTCTAAGGTC 59.398 55.000 0.00 0.00 46.48 3.85
402 403 0.317479 GTGCGACCACACTCTAAGGT 59.683 55.000 0.00 0.00 41.67 3.50
403 404 0.732880 CGTGCGACCACACTCTAAGG 60.733 60.000 0.00 0.00 42.17 2.69
404 405 0.039437 ACGTGCGACCACACTCTAAG 60.039 55.000 0.00 0.00 42.17 2.18
405 406 1.237533 TACGTGCGACCACACTCTAA 58.762 50.000 0.00 0.00 42.17 2.10
406 407 1.399440 GATACGTGCGACCACACTCTA 59.601 52.381 0.00 0.00 42.17 2.43
407 408 0.170561 GATACGTGCGACCACACTCT 59.829 55.000 0.00 0.00 42.17 3.24
408 409 0.170561 AGATACGTGCGACCACACTC 59.829 55.000 0.00 0.00 42.17 3.51
409 410 0.109272 CAGATACGTGCGACCACACT 60.109 55.000 0.00 0.00 42.17 3.55
410 411 0.109458 TCAGATACGTGCGACCACAC 60.109 55.000 0.00 0.00 42.17 3.82
411 412 0.815095 ATCAGATACGTGCGACCACA 59.185 50.000 0.00 0.00 42.17 4.17
412 413 2.768833 TATCAGATACGTGCGACCAC 57.231 50.000 0.00 0.00 38.62 4.16
413 414 3.786516 TTTATCAGATACGTGCGACCA 57.213 42.857 0.00 0.00 0.00 4.02
414 415 6.758593 TTAATTTATCAGATACGTGCGACC 57.241 37.500 0.00 0.00 0.00 4.79
415 416 9.646336 ATTTTTAATTTATCAGATACGTGCGAC 57.354 29.630 0.00 0.00 0.00 5.19
416 417 9.858247 GATTTTTAATTTATCAGATACGTGCGA 57.142 29.630 0.00 0.00 0.00 5.10
417 418 9.644993 TGATTTTTAATTTATCAGATACGTGCG 57.355 29.630 0.00 0.00 0.00 5.34
433 434 9.086336 CCTGCGATAACAATGTTGATTTTTAAT 57.914 29.630 9.15 0.00 0.00 1.40
434 435 7.062839 GCCTGCGATAACAATGTTGATTTTTAA 59.937 33.333 9.15 0.00 0.00 1.52
435 436 6.529829 GCCTGCGATAACAATGTTGATTTTTA 59.470 34.615 9.15 0.00 0.00 1.52
436 437 5.348451 GCCTGCGATAACAATGTTGATTTTT 59.652 36.000 9.15 0.00 0.00 1.94
437 438 4.864247 GCCTGCGATAACAATGTTGATTTT 59.136 37.500 9.15 0.00 0.00 1.82
438 439 4.423732 GCCTGCGATAACAATGTTGATTT 58.576 39.130 9.15 0.00 0.00 2.17
439 440 3.487376 CGCCTGCGATAACAATGTTGATT 60.487 43.478 9.15 0.00 42.83 2.57
440 441 2.032054 CGCCTGCGATAACAATGTTGAT 59.968 45.455 9.15 0.00 42.83 2.57
441 442 1.396648 CGCCTGCGATAACAATGTTGA 59.603 47.619 9.15 0.00 42.83 3.18
460 461 8.633075 AATTTTGTATTCTGATTACAATGCCG 57.367 30.769 19.82 0.00 34.24 5.69
470 471 7.977853 GTCCATCTGCAAATTTTGTATTCTGAT 59.022 33.333 10.65 6.16 0.00 2.90
472 473 7.062605 GTGTCCATCTGCAAATTTTGTATTCTG 59.937 37.037 10.65 4.54 0.00 3.02
474 475 6.311200 GGTGTCCATCTGCAAATTTTGTATTC 59.689 38.462 10.65 0.00 0.00 1.75
475 476 6.165577 GGTGTCCATCTGCAAATTTTGTATT 58.834 36.000 10.65 0.00 0.00 1.89
477 478 4.320861 CGGTGTCCATCTGCAAATTTTGTA 60.321 41.667 10.65 5.44 0.00 2.41
479 480 2.988493 CGGTGTCCATCTGCAAATTTTG 59.012 45.455 4.72 4.72 0.00 2.44
487 492 2.103042 GCTGTCGGTGTCCATCTGC 61.103 63.158 0.00 0.00 0.00 4.26
496 501 2.639286 GCCTTTGTGCTGTCGGTG 59.361 61.111 0.00 0.00 0.00 4.94
498 503 3.726517 CGGCCTTTGTGCTGTCGG 61.727 66.667 0.00 0.00 32.81 4.79
504 509 0.666374 ACAAACTACGGCCTTTGTGC 59.334 50.000 17.39 0.00 38.80 4.57
518 523 3.935993 TCTGCCTAGGCTGACAAAC 57.064 52.632 32.73 5.59 42.61 2.93
525 530 2.002505 ATATCGTGTCTGCCTAGGCT 57.997 50.000 33.07 13.89 42.51 4.58
551 556 5.164022 GCCGATTAAAATAGGGACGATTACG 60.164 44.000 4.33 0.00 37.31 3.18
552 557 5.930569 AGCCGATTAAAATAGGGACGATTAC 59.069 40.000 4.33 0.00 31.02 1.89
553 558 6.105397 AGCCGATTAAAATAGGGACGATTA 57.895 37.500 4.33 0.00 31.02 1.75
554 559 4.969484 AGCCGATTAAAATAGGGACGATT 58.031 39.130 4.33 0.00 34.48 3.34
555 560 4.618920 AGCCGATTAAAATAGGGACGAT 57.381 40.909 4.33 0.00 32.48 3.73
595 602 1.413227 GGAGGTAGTATGCTCCCCTGT 60.413 57.143 6.68 0.00 0.00 4.00
596 603 1.133009 AGGAGGTAGTATGCTCCCCTG 60.133 57.143 6.68 0.00 36.70 4.45
599 606 2.485657 GCAAAGGAGGTAGTATGCTCCC 60.486 54.545 0.00 0.00 36.70 4.30
600 607 2.485657 GGCAAAGGAGGTAGTATGCTCC 60.486 54.545 0.00 0.00 34.37 4.70
601 608 2.485657 GGGCAAAGGAGGTAGTATGCTC 60.486 54.545 0.00 0.00 34.37 4.26
605 612 1.010917 AGGGGGCAAAGGAGGTAGTAT 59.989 52.381 0.00 0.00 0.00 2.12
607 614 0.477795 AAGGGGGCAAAGGAGGTAGT 60.478 55.000 0.00 0.00 0.00 2.73
610 617 0.471780 CAAAAGGGGGCAAAGGAGGT 60.472 55.000 0.00 0.00 0.00 3.85
611 618 1.830587 GCAAAAGGGGGCAAAGGAGG 61.831 60.000 0.00 0.00 0.00 4.30
612 619 1.120795 TGCAAAAGGGGGCAAAGGAG 61.121 55.000 0.00 0.00 37.03 3.69
614 621 1.835693 TTGCAAAAGGGGGCAAAGG 59.164 52.632 0.00 0.00 46.11 3.11
618 625 1.743321 CGACTTTGCAAAAGGGGGCA 61.743 55.000 13.84 0.00 38.46 5.36
619 626 1.006220 CGACTTTGCAAAAGGGGGC 60.006 57.895 13.84 2.47 0.00 5.80
620 627 0.313987 GACGACTTTGCAAAAGGGGG 59.686 55.000 13.84 3.55 0.00 5.40
621 628 1.028905 TGACGACTTTGCAAAAGGGG 58.971 50.000 13.84 3.94 0.00 4.79
625 632 3.127589 TCTCGATGACGACTTTGCAAAA 58.872 40.909 13.84 0.00 43.81 2.44
669 676 2.127232 GCTTGCCGACTTTGCGTC 60.127 61.111 0.00 0.00 39.33 5.19
700 707 7.065085 CAGTCGTAAAAATCAAGTCATCATCCT 59.935 37.037 0.00 0.00 0.00 3.24
756 786 3.060473 CGAATCGGCGACTTCTATTTTCC 60.060 47.826 13.76 0.00 0.00 3.13
758 788 3.518590 ACGAATCGGCGACTTCTATTTT 58.481 40.909 13.76 0.00 34.83 1.82
762 792 3.911989 GACGAATCGGCGACTTCTA 57.088 52.632 13.76 0.00 34.83 2.10
799 841 2.043450 CAGACGAGGGAGGAGCCT 60.043 66.667 0.00 0.00 36.66 4.58
800 842 2.043852 TCAGACGAGGGAGGAGCC 60.044 66.667 0.00 0.00 0.00 4.70
801 843 1.379309 AGTCAGACGAGGGAGGAGC 60.379 63.158 0.00 0.00 0.00 4.70
802 844 0.254747 AGAGTCAGACGAGGGAGGAG 59.745 60.000 0.00 0.00 0.00 3.69
1044 1086 4.899239 GTGGCGATGCGGAGGAGG 62.899 72.222 0.00 0.00 0.00 4.30
1133 1179 0.635009 ACGGGTTAGGGATCTGAGGA 59.365 55.000 0.00 0.00 0.00 3.71
1138 1184 4.272245 CCGACGGGTTAGGGATCT 57.728 61.111 5.81 0.00 0.00 2.75
1148 1194 1.140161 TGAGCGATTAACCGACGGG 59.860 57.895 20.00 0.00 40.11 5.28
1201 1247 2.658593 CTAATCGCTCACCGCCGG 60.659 66.667 0.00 0.00 36.73 6.13
1202 1248 3.330853 GCTAATCGCTCACCGCCG 61.331 66.667 0.00 0.00 36.73 6.46
1211 1273 2.863137 CAGGACTGAAGAAGCTAATCGC 59.137 50.000 0.00 0.00 39.57 4.58
1212 1274 3.452474 CCAGGACTGAAGAAGCTAATCG 58.548 50.000 0.00 0.00 0.00 3.34
1213 1275 3.202097 GCCAGGACTGAAGAAGCTAATC 58.798 50.000 0.00 0.00 0.00 1.75
1219 1281 0.979665 TCAGGCCAGGACTGAAGAAG 59.020 55.000 24.25 0.00 45.60 2.85
1226 1288 4.640690 ACGGGTCAGGCCAGGACT 62.641 66.667 22.23 0.00 39.65 3.85
1228 1290 4.954118 ACACGGGTCAGGCCAGGA 62.954 66.667 5.01 0.00 39.65 3.86
1231 1293 4.263572 CCAACACGGGTCAGGCCA 62.264 66.667 5.01 0.00 39.65 5.36
1233 1295 1.826487 AAACCAACACGGGTCAGGC 60.826 57.895 9.02 0.00 41.32 4.85
1237 1299 2.197605 CCCCAAACCAACACGGGTC 61.198 63.158 0.00 0.00 41.32 4.46
1238 1300 2.123640 CCCCAAACCAACACGGGT 60.124 61.111 0.00 0.00 45.04 5.28
1249 1317 1.289830 TCGGACTAGAGATCCCCCAAA 59.710 52.381 0.00 0.00 31.99 3.28
1261 1329 0.727970 CGGTCACTCACTCGGACTAG 59.272 60.000 0.00 0.00 0.00 2.57
1307 1375 1.302993 ATTAAACAGCCCCGCGTGT 60.303 52.632 4.92 0.00 0.00 4.49
1315 1383 2.599082 CAGACGAGACGATTAAACAGCC 59.401 50.000 0.00 0.00 0.00 4.85
1343 1411 3.053455 GGACACATTCTAGTATCTGCGC 58.947 50.000 0.00 0.00 0.00 6.09
1345 1413 5.561919 CGAGAGGACACATTCTAGTATCTGC 60.562 48.000 0.00 0.00 0.00 4.26
1346 1414 5.760743 TCGAGAGGACACATTCTAGTATCTG 59.239 44.000 0.00 0.00 0.00 2.90
1347 1415 5.761234 GTCGAGAGGACACATTCTAGTATCT 59.239 44.000 0.00 0.00 45.36 1.98
1348 1416 5.992729 GTCGAGAGGACACATTCTAGTATC 58.007 45.833 0.00 0.00 45.36 2.24
1377 1450 0.811616 CGCAATCTACTCCACCCAGC 60.812 60.000 0.00 0.00 0.00 4.85
1378 1451 0.537188 ACGCAATCTACTCCACCCAG 59.463 55.000 0.00 0.00 0.00 4.45
1418 1491 7.308348 CCAAGAAAGTAAATCGGCTGTAAGAAA 60.308 37.037 0.00 0.00 34.07 2.52
1440 1515 1.406069 CCGGACTCTGAATGGACCAAG 60.406 57.143 0.00 0.00 0.00 3.61
1447 1522 5.050091 GCAATACAATACCGGACTCTGAATG 60.050 44.000 9.46 0.00 0.00 2.67
1450 1525 3.181469 GGCAATACAATACCGGACTCTGA 60.181 47.826 9.46 0.00 0.00 3.27
1458 1533 0.586319 CGGCTGGCAATACAATACCG 59.414 55.000 1.08 0.00 0.00 4.02
1483 1558 1.739562 GGCGACAGCTCTCTTGTGG 60.740 63.158 0.00 0.00 44.37 4.17
1509 1612 1.009222 GAACGACTGTGACGACGGT 60.009 57.895 0.00 0.00 44.92 4.83
1512 1615 2.243407 GATCAGAACGACTGTGACGAC 58.757 52.381 12.23 0.00 45.86 4.34
1535 1644 6.328934 TCCCATTAGGACAGCAAACATAGATA 59.671 38.462 0.00 0.00 40.93 1.98
1539 1648 4.853468 TCCCATTAGGACAGCAAACATA 57.147 40.909 0.00 0.00 40.93 2.29
1556 1665 2.237143 GAGACATCATTCCACTGTCCCA 59.763 50.000 0.00 0.00 40.08 4.37
1598 1712 7.599998 GGTCAGAATACTTGCACAATCAAAATT 59.400 33.333 0.00 0.00 0.00 1.82
1599 1713 7.092716 GGTCAGAATACTTGCACAATCAAAAT 58.907 34.615 0.00 0.00 0.00 1.82
1606 1720 4.085357 ACTGGTCAGAATACTTGCACAA 57.915 40.909 4.84 0.00 0.00 3.33
1642 1756 3.652274 CCGGGTACGAAACTAAGTTCAA 58.348 45.455 0.00 0.00 44.60 2.69
1650 1764 2.363359 CCTAATAGCCGGGTACGAAACT 59.637 50.000 17.09 0.00 44.60 2.66
1651 1765 2.546584 CCCTAATAGCCGGGTACGAAAC 60.547 54.545 17.09 0.00 44.60 2.78
1661 1776 6.662865 ATCATCTGATATCCCTAATAGCCG 57.337 41.667 0.00 0.00 32.01 5.52
1720 1864 0.535335 CTGCCAGCCAGAAATTGCAT 59.465 50.000 0.00 0.00 44.64 3.96
1755 1899 4.065088 GCAGGTGATGACTGTTTCAGTTA 58.935 43.478 3.91 0.61 45.44 2.24
1799 1947 7.093354 GTCAGTCATGAGAGATCTAACAACAA 58.907 38.462 0.00 0.00 35.66 2.83
1907 2058 4.259356 CAAGCAAGATGATCTCCTCACAA 58.741 43.478 0.00 0.00 36.48 3.33
1910 2061 4.019950 TGAACAAGCAAGATGATCTCCTCA 60.020 41.667 0.00 0.00 38.53 3.86
1958 2109 1.813753 CGTGGGAAGCACCGGTATG 60.814 63.158 6.87 0.00 40.11 2.39
1967 2118 1.090052 GTGGCATACTCGTGGGAAGC 61.090 60.000 0.00 0.00 0.00 3.86
1992 2143 1.347320 GAACCGGCAGAGAGTAAACG 58.653 55.000 0.00 0.00 0.00 3.60
1998 2149 0.108615 ACATTCGAACCGGCAGAGAG 60.109 55.000 0.00 0.00 0.00 3.20
1999 2150 0.320374 AACATTCGAACCGGCAGAGA 59.680 50.000 0.00 0.00 0.00 3.10
2019 2170 5.106396 GCCAGCATCCTTATGACATAACATC 60.106 44.000 3.68 0.00 34.84 3.06
2075 2234 3.632145 AGAGCACCCTACAAACAAACAAG 59.368 43.478 0.00 0.00 0.00 3.16
2076 2235 3.380004 CAGAGCACCCTACAAACAAACAA 59.620 43.478 0.00 0.00 0.00 2.83
2077 2236 2.948979 CAGAGCACCCTACAAACAAACA 59.051 45.455 0.00 0.00 0.00 2.83
2078 2237 3.211045 TCAGAGCACCCTACAAACAAAC 58.789 45.455 0.00 0.00 0.00 2.93
2079 2238 3.135712 TCTCAGAGCACCCTACAAACAAA 59.864 43.478 0.00 0.00 0.00 2.83
2080 2239 2.703536 TCTCAGAGCACCCTACAAACAA 59.296 45.455 0.00 0.00 0.00 2.83
2081 2240 2.325484 TCTCAGAGCACCCTACAAACA 58.675 47.619 0.00 0.00 0.00 2.83
2082 2241 3.244249 ACTTCTCAGAGCACCCTACAAAC 60.244 47.826 0.00 0.00 0.00 2.93
2143 2302 4.179926 TGAACTTCCAGAGACATCTTCG 57.820 45.455 0.00 0.00 31.64 3.79
2154 2313 3.181471 ACCTCGCTATCATGAACTTCCAG 60.181 47.826 0.00 0.00 0.00 3.86
2261 2420 3.187227 CCAACTCTGGATCTTTGACAACG 59.813 47.826 0.00 0.00 46.92 4.10
2492 2651 2.554806 AATTGATCATGTGCTGCGTG 57.445 45.000 0.00 0.00 35.47 5.34
2495 2654 4.561606 GTCTTCAAATTGATCATGTGCTGC 59.438 41.667 0.00 0.00 0.00 5.25
2708 2867 1.004595 CTGTCATCACAGCATCCACG 58.995 55.000 0.00 0.00 43.77 4.94
2787 2946 2.275418 GAACATCACGGGCCCCAT 59.725 61.111 18.66 0.37 0.00 4.00
2906 3065 2.915659 AGTCCGGTCTTCACGCCA 60.916 61.111 0.00 0.00 0.00 5.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.