Multiple sequence alignment - TraesCS2B01G526100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G526100 chr2B 100.000 3072 0 0 1 3072 719985139 719982068 0.000000e+00 5674.0
1 TraesCS2B01G526100 chr2B 91.443 596 48 3 2386 2980 91166453 91167046 0.000000e+00 815.0
2 TraesCS2B01G526100 chr2B 85.577 104 4 5 2174 2276 706119108 706119201 7.010000e-17 99.0
3 TraesCS2B01G526100 chr2B 85.577 104 4 5 2174 2276 706122239 706122332 7.010000e-17 99.0
4 TraesCS2B01G526100 chr2D 90.966 1439 87 20 721 2133 593524418 593522997 0.000000e+00 1897.0
5 TraesCS2B01G526100 chr2D 91.694 614 38 6 1 607 57199709 57199102 0.000000e+00 839.0
6 TraesCS2B01G526100 chr2D 75.248 202 36 12 1231 1428 87762411 87762602 1.960000e-12 84.2
7 TraesCS2B01G526100 chr2A 91.240 1347 89 13 721 2050 728419005 728417671 0.000000e+00 1807.0
8 TraesCS2B01G526100 chr2A 91.228 57 5 0 1372 1428 88118124 88118180 9.130000e-11 78.7
9 TraesCS2B01G526100 chr1B 91.843 613 38 5 1 606 7540803 7541410 0.000000e+00 845.0
10 TraesCS2B01G526100 chr1B 91.382 615 40 6 1 607 22271404 22272013 0.000000e+00 830.0
11 TraesCS2B01G526100 chr7D 91.680 613 40 4 1 607 87363513 87362906 0.000000e+00 839.0
12 TraesCS2B01G526100 chr7D 91.545 615 39 6 1 608 478768247 478767639 0.000000e+00 835.0
13 TraesCS2B01G526100 chr7D 91.694 602 38 5 1 596 104228402 104227807 0.000000e+00 824.0
14 TraesCS2B01G526100 chr7D 86.087 115 4 8 2171 2283 45593210 45593106 2.500000e-21 113.0
15 TraesCS2B01G526100 chr7D 97.368 38 0 1 2241 2278 569501135 569501171 2.560000e-06 63.9
16 TraesCS2B01G526100 chr7D 100.000 32 0 0 2241 2272 569544200 569544231 3.310000e-05 60.2
17 TraesCS2B01G526100 chr7D 94.444 36 1 1 2241 2276 569557732 569557766 2.000000e-03 54.7
18 TraesCS2B01G526100 chr1D 91.396 616 36 8 1 607 22302074 22302681 0.000000e+00 828.0
19 TraesCS2B01G526100 chr1D 91.205 614 42 5 1 607 494853590 494852982 0.000000e+00 824.0
20 TraesCS2B01G526100 chr6B 91.100 618 41 5 1 609 698069823 698070435 0.000000e+00 824.0
21 TraesCS2B01G526100 chr6B 91.892 37 3 0 2184 2220 590040334 590040298 6.000000e-03 52.8
22 TraesCS2B01G526100 chr5D 82.260 1009 128 34 1023 1992 495308555 495309551 0.000000e+00 824.0
23 TraesCS2B01G526100 chr1A 92.639 557 39 2 2427 2982 60811952 60811397 0.000000e+00 800.0
24 TraesCS2B01G526100 chr1A 81.818 88 2 9 2192 2276 301189370 301189294 9.200000e-06 62.1
25 TraesCS2B01G526100 chr5B 81.657 1014 131 35 1023 1992 611952877 611953879 0.000000e+00 791.0
26 TraesCS2B01G526100 chr5B 92.200 500 33 4 1273 1769 251917775 251918271 0.000000e+00 702.0
27 TraesCS2B01G526100 chr3A 90.134 598 51 6 2389 2981 647693243 647692649 0.000000e+00 771.0
28 TraesCS2B01G526100 chr5A 81.009 1011 135 37 1023 1991 619454323 619455318 0.000000e+00 750.0
29 TraesCS2B01G526100 chr5A 79.445 973 141 28 1051 1998 631859146 631858208 4.320000e-178 634.0
30 TraesCS2B01G526100 chr3B 92.264 530 39 2 2456 2983 424779165 424779694 0.000000e+00 750.0
31 TraesCS2B01G526100 chr3B 86.486 111 7 6 2173 2283 713991087 713991189 6.960000e-22 115.0
32 TraesCS2B01G526100 chr7B 80.776 541 96 7 2448 2983 7615242 7615779 1.700000e-112 416.0
33 TraesCS2B01G526100 chr7B 90.385 52 3 2 2172 2221 741547977 741547926 1.980000e-07 67.6
34 TraesCS2B01G526100 chr7B 97.222 36 0 1 2241 2276 626040672 626040706 3.310000e-05 60.2
35 TraesCS2B01G526100 chr6A 85.904 376 52 1 2494 2869 357374128 357374502 1.720000e-107 399.0
36 TraesCS2B01G526100 chr7A 82.282 412 72 1 2388 2799 734066724 734067134 3.770000e-94 355.0
37 TraesCS2B01G526100 chr4A 86.957 115 4 8 2171 2283 539160929 539161034 5.380000e-23 119.0
38 TraesCS2B01G526100 chrUn 90.909 55 3 2 2168 2221 38956313 38956366 4.250000e-09 73.1
39 TraesCS2B01G526100 chr4B 85.714 63 4 5 2164 2221 29693869 29693807 9.200000e-06 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G526100 chr2B 719982068 719985139 3071 True 5674 5674 100.000 1 3072 1 chr2B.!!$R1 3071
1 TraesCS2B01G526100 chr2B 91166453 91167046 593 False 815 815 91.443 2386 2980 1 chr2B.!!$F1 594
2 TraesCS2B01G526100 chr2D 593522997 593524418 1421 True 1897 1897 90.966 721 2133 1 chr2D.!!$R2 1412
3 TraesCS2B01G526100 chr2D 57199102 57199709 607 True 839 839 91.694 1 607 1 chr2D.!!$R1 606
4 TraesCS2B01G526100 chr2A 728417671 728419005 1334 True 1807 1807 91.240 721 2050 1 chr2A.!!$R1 1329
5 TraesCS2B01G526100 chr1B 7540803 7541410 607 False 845 845 91.843 1 606 1 chr1B.!!$F1 605
6 TraesCS2B01G526100 chr1B 22271404 22272013 609 False 830 830 91.382 1 607 1 chr1B.!!$F2 606
7 TraesCS2B01G526100 chr7D 87362906 87363513 607 True 839 839 91.680 1 607 1 chr7D.!!$R2 606
8 TraesCS2B01G526100 chr7D 478767639 478768247 608 True 835 835 91.545 1 608 1 chr7D.!!$R4 607
9 TraesCS2B01G526100 chr7D 104227807 104228402 595 True 824 824 91.694 1 596 1 chr7D.!!$R3 595
10 TraesCS2B01G526100 chr1D 22302074 22302681 607 False 828 828 91.396 1 607 1 chr1D.!!$F1 606
11 TraesCS2B01G526100 chr1D 494852982 494853590 608 True 824 824 91.205 1 607 1 chr1D.!!$R1 606
12 TraesCS2B01G526100 chr6B 698069823 698070435 612 False 824 824 91.100 1 609 1 chr6B.!!$F1 608
13 TraesCS2B01G526100 chr5D 495308555 495309551 996 False 824 824 82.260 1023 1992 1 chr5D.!!$F1 969
14 TraesCS2B01G526100 chr1A 60811397 60811952 555 True 800 800 92.639 2427 2982 1 chr1A.!!$R1 555
15 TraesCS2B01G526100 chr5B 611952877 611953879 1002 False 791 791 81.657 1023 1992 1 chr5B.!!$F2 969
16 TraesCS2B01G526100 chr3A 647692649 647693243 594 True 771 771 90.134 2389 2981 1 chr3A.!!$R1 592
17 TraesCS2B01G526100 chr5A 619454323 619455318 995 False 750 750 81.009 1023 1991 1 chr5A.!!$F1 968
18 TraesCS2B01G526100 chr5A 631858208 631859146 938 True 634 634 79.445 1051 1998 1 chr5A.!!$R1 947
19 TraesCS2B01G526100 chr3B 424779165 424779694 529 False 750 750 92.264 2456 2983 1 chr3B.!!$F1 527
20 TraesCS2B01G526100 chr7B 7615242 7615779 537 False 416 416 80.776 2448 2983 1 chr7B.!!$F1 535

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
621 631 0.17899 AAAAACAGGGCTCCTTCGCT 60.179 50.0 0.0 0.0 0.0 4.93 F
622 632 0.17899 AAAACAGGGCTCCTTCGCTT 60.179 50.0 0.0 0.0 0.0 4.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1618 1690 0.195096 TCCCCAGGAAGTAAGGGTGT 59.805 55.0 0.00 0.0 41.16 4.16 R
2251 2326 0.321996 GGGAAGATGCTATCCCGGAC 59.678 60.0 0.73 0.0 45.56 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
86 88 5.277058 GCAAGCTAAATCTACACCAAGATCG 60.277 44.000 0.00 0.00 35.10 3.69
159 161 3.134623 TCATTCACAGAGGGCGATTATGT 59.865 43.478 0.00 0.00 0.00 2.29
168 170 2.775384 AGGGCGATTATGTTGGGTCTTA 59.225 45.455 0.00 0.00 0.00 2.10
235 237 2.282555 CACGGCGAGATTAGAACATGTG 59.717 50.000 16.62 0.00 0.00 3.21
237 239 2.738643 CGGCGAGATTAGAACATGTGGT 60.739 50.000 0.00 0.00 0.00 4.16
238 240 2.866762 GGCGAGATTAGAACATGTGGTC 59.133 50.000 0.00 0.00 0.00 4.02
266 268 3.570638 CGGCAGAAGCGGCATCTG 61.571 66.667 26.12 26.12 45.65 2.90
539 546 3.328050 GGATCGATACCCCTCCTGATTTT 59.672 47.826 0.00 0.00 0.00 1.82
561 568 7.462571 TTTATTGTGAGTCTACTAGCAGACA 57.537 36.000 22.39 4.49 46.15 3.41
573 580 8.933807 GTCTACTAGCAGACAATATATACGTCA 58.066 37.037 16.84 0.00 43.70 4.35
620 630 2.341452 AAAAACAGGGCTCCTTCGC 58.659 52.632 0.00 0.00 0.00 4.70
621 631 0.178990 AAAAACAGGGCTCCTTCGCT 60.179 50.000 0.00 0.00 0.00 4.93
622 632 0.178990 AAAACAGGGCTCCTTCGCTT 60.179 50.000 0.00 0.00 0.00 4.68
623 633 0.890996 AAACAGGGCTCCTTCGCTTG 60.891 55.000 0.00 0.00 0.00 4.01
624 634 3.130160 CAGGGCTCCTTCGCTTGC 61.130 66.667 0.00 0.00 0.00 4.01
625 635 3.325753 AGGGCTCCTTCGCTTGCT 61.326 61.111 0.00 0.00 0.00 3.91
626 636 2.821810 GGGCTCCTTCGCTTGCTC 60.822 66.667 0.00 0.00 0.00 4.26
627 637 2.267324 GGCTCCTTCGCTTGCTCT 59.733 61.111 0.00 0.00 0.00 4.09
628 638 2.105466 GGCTCCTTCGCTTGCTCTG 61.105 63.158 0.00 0.00 0.00 3.35
629 639 1.079543 GCTCCTTCGCTTGCTCTGA 60.080 57.895 0.00 0.00 0.00 3.27
630 640 1.083242 GCTCCTTCGCTTGCTCTGAG 61.083 60.000 0.00 0.00 0.00 3.35
631 641 1.079543 TCCTTCGCTTGCTCTGAGC 60.080 57.895 22.38 22.38 42.82 4.26
632 642 1.079266 CCTTCGCTTGCTCTGAGCT 60.079 57.895 28.04 0.00 42.97 4.09
633 643 1.083242 CCTTCGCTTGCTCTGAGCTC 61.083 60.000 28.04 16.51 42.97 4.09
634 644 0.389556 CTTCGCTTGCTCTGAGCTCA 60.390 55.000 28.04 17.19 42.97 4.26
635 645 0.389556 TTCGCTTGCTCTGAGCTCAG 60.390 55.000 33.73 33.73 42.97 3.35
636 646 2.454464 CGCTTGCTCTGAGCTCAGC 61.454 63.158 34.48 29.41 42.97 4.26
637 647 2.454464 GCTTGCTCTGAGCTCAGCG 61.454 63.158 34.48 30.21 42.97 5.18
638 648 1.810441 CTTGCTCTGAGCTCAGCGG 60.810 63.158 34.48 28.08 42.97 5.52
639 649 2.223200 CTTGCTCTGAGCTCAGCGGA 62.223 60.000 34.48 28.48 42.97 5.54
640 650 2.104729 GCTCTGAGCTCAGCGGAG 59.895 66.667 34.48 27.34 43.46 4.63
641 651 2.413963 GCTCTGAGCTCAGCGGAGA 61.414 63.158 34.48 18.82 44.26 3.71
642 652 1.943116 GCTCTGAGCTCAGCGGAGAA 61.943 60.000 34.48 17.95 44.26 2.87
643 653 0.179140 CTCTGAGCTCAGCGGAGAAC 60.179 60.000 34.48 10.43 44.26 3.01
644 654 0.895559 TCTGAGCTCAGCGGAGAACA 60.896 55.000 34.48 15.28 44.26 3.18
645 655 0.735632 CTGAGCTCAGCGGAGAACAC 60.736 60.000 29.79 5.69 44.26 3.32
646 656 1.803519 GAGCTCAGCGGAGAACACG 60.804 63.158 18.66 0.00 44.26 4.49
647 657 2.201436 GAGCTCAGCGGAGAACACGA 62.201 60.000 18.66 0.00 44.26 4.35
648 658 1.803519 GCTCAGCGGAGAACACGAG 60.804 63.158 18.66 0.00 44.26 4.18
649 659 1.581954 CTCAGCGGAGAACACGAGT 59.418 57.895 8.31 0.00 44.26 4.18
650 660 0.455295 CTCAGCGGAGAACACGAGTC 60.455 60.000 8.31 0.00 44.26 3.36
651 661 1.170290 TCAGCGGAGAACACGAGTCA 61.170 55.000 0.00 0.00 0.00 3.41
652 662 0.318699 CAGCGGAGAACACGAGTCAA 60.319 55.000 0.00 0.00 0.00 3.18
653 663 0.387929 AGCGGAGAACACGAGTCAAA 59.612 50.000 0.00 0.00 0.00 2.69
654 664 0.507358 GCGGAGAACACGAGTCAAAC 59.493 55.000 0.00 0.00 0.00 2.93
655 665 1.847818 CGGAGAACACGAGTCAAACA 58.152 50.000 0.00 0.00 0.00 2.83
656 666 2.198406 CGGAGAACACGAGTCAAACAA 58.802 47.619 0.00 0.00 0.00 2.83
657 667 2.218759 CGGAGAACACGAGTCAAACAAG 59.781 50.000 0.00 0.00 0.00 3.16
658 668 3.454375 GGAGAACACGAGTCAAACAAGA 58.546 45.455 0.00 0.00 0.00 3.02
659 669 3.869246 GGAGAACACGAGTCAAACAAGAA 59.131 43.478 0.00 0.00 0.00 2.52
660 670 4.260253 GGAGAACACGAGTCAAACAAGAAC 60.260 45.833 0.00 0.00 0.00 3.01
661 671 4.250464 AGAACACGAGTCAAACAAGAACA 58.750 39.130 0.00 0.00 0.00 3.18
662 672 4.092968 AGAACACGAGTCAAACAAGAACAC 59.907 41.667 0.00 0.00 0.00 3.32
663 673 2.676342 ACACGAGTCAAACAAGAACACC 59.324 45.455 0.00 0.00 0.00 4.16
664 674 2.936498 CACGAGTCAAACAAGAACACCT 59.064 45.455 0.00 0.00 0.00 4.00
665 675 3.001330 CACGAGTCAAACAAGAACACCTC 59.999 47.826 0.00 0.00 0.00 3.85
666 676 2.218759 CGAGTCAAACAAGAACACCTCG 59.781 50.000 0.00 0.00 35.28 4.63
667 677 3.195661 GAGTCAAACAAGAACACCTCGT 58.804 45.455 0.00 0.00 0.00 4.18
668 678 3.195661 AGTCAAACAAGAACACCTCGTC 58.804 45.455 0.00 0.00 0.00 4.20
669 679 3.118738 AGTCAAACAAGAACACCTCGTCT 60.119 43.478 0.00 0.00 0.00 4.18
670 680 4.098960 AGTCAAACAAGAACACCTCGTCTA 59.901 41.667 0.00 0.00 0.00 2.59
671 681 4.208666 GTCAAACAAGAACACCTCGTCTAC 59.791 45.833 0.00 0.00 0.00 2.59
672 682 4.116961 CAAACAAGAACACCTCGTCTACA 58.883 43.478 0.00 0.00 0.00 2.74
673 683 3.366440 ACAAGAACACCTCGTCTACAC 57.634 47.619 0.00 0.00 0.00 2.90
689 699 6.648725 GTCTACACGAAACAGCTAATCAAT 57.351 37.500 0.00 0.00 0.00 2.57
690 700 7.751047 GTCTACACGAAACAGCTAATCAATA 57.249 36.000 0.00 0.00 0.00 1.90
691 701 8.354011 GTCTACACGAAACAGCTAATCAATAT 57.646 34.615 0.00 0.00 0.00 1.28
692 702 9.459640 GTCTACACGAAACAGCTAATCAATATA 57.540 33.333 0.00 0.00 0.00 0.86
742 752 7.771927 AAAATGATATCTGGATAGCTTTGGG 57.228 36.000 3.98 0.00 30.72 4.12
751 761 4.735369 TGGATAGCTTTGGGTTGAAGAAA 58.265 39.130 0.00 0.00 0.00 2.52
752 762 5.144100 TGGATAGCTTTGGGTTGAAGAAAA 58.856 37.500 0.00 0.00 0.00 2.29
753 763 5.600484 TGGATAGCTTTGGGTTGAAGAAAAA 59.400 36.000 0.00 0.00 0.00 1.94
811 822 3.944055 TCTCTCTGGACAGCTAAACAC 57.056 47.619 0.00 0.00 0.00 3.32
828 839 7.553044 AGCTAAACACTGTTAATTATCTGGACC 59.447 37.037 0.00 0.00 0.00 4.46
829 840 7.553044 GCTAAACACTGTTAATTATCTGGACCT 59.447 37.037 0.00 0.00 0.00 3.85
875 886 6.507023 AGTTGAAGTTTGGCAGTAGAAATTG 58.493 36.000 0.00 0.00 0.00 2.32
876 887 6.096846 AGTTGAAGTTTGGCAGTAGAAATTGT 59.903 34.615 0.00 0.00 0.00 2.71
880 891 5.376625 AGTTTGGCAGTAGAAATTGTCTGA 58.623 37.500 0.00 0.00 37.12 3.27
907 922 6.899393 TTCCATCAGCTGACAAACTTAAAT 57.101 33.333 20.97 0.00 0.00 1.40
950 966 2.602211 GCGAGTTGATGAGATCACAGTG 59.398 50.000 0.00 0.00 39.39 3.66
955 971 4.774726 AGTTGATGAGATCACAGTGGTAGT 59.225 41.667 0.00 0.00 39.39 2.73
962 992 4.090090 AGATCACAGTGGTAGTTGCTACT 58.910 43.478 6.00 6.00 37.16 2.57
963 993 5.262009 AGATCACAGTGGTAGTTGCTACTA 58.738 41.667 3.76 3.76 37.16 1.82
1001 1031 3.552875 AGCCATCCATCACTTTGATCAG 58.447 45.455 0.00 0.00 34.28 2.90
1012 1042 2.158475 ACTTTGATCAGCCCAAACTCCA 60.158 45.455 0.00 0.00 31.13 3.86
1291 1336 0.615331 TCCTCGTCTACTACCACGGT 59.385 55.000 0.00 0.00 36.64 4.83
1462 1507 2.747686 GTCGCCTGGGTCCTTTCA 59.252 61.111 0.00 0.00 0.00 2.69
1576 1627 1.365368 CCAACATCGCGCACCACATA 61.365 55.000 8.75 0.00 0.00 2.29
1624 1696 1.305046 CCTCGTCCTGGTACACCCT 60.305 63.158 0.00 0.00 34.29 4.34
2031 2103 2.278857 CGACATCGCCGGAAGAGG 60.279 66.667 5.05 8.22 0.00 3.69
2032 2104 2.771639 CGACATCGCCGGAAGAGGA 61.772 63.158 16.85 1.13 0.00 3.71
2033 2105 1.515954 GACATCGCCGGAAGAGGAA 59.484 57.895 16.85 0.00 0.00 3.36
2064 2136 1.220749 GTGTAGCTTCATCCCCGCA 59.779 57.895 0.00 0.00 0.00 5.69
2075 2147 6.045955 GCTTCATCCCCGCAAAATAAAAATA 58.954 36.000 0.00 0.00 0.00 1.40
2101 2173 7.880059 AAAACTGTAACTTCACCGTATAGTC 57.120 36.000 0.00 0.00 0.00 2.59
2104 2176 5.125097 ACTGTAACTTCACCGTATAGTCTGG 59.875 44.000 0.00 0.00 0.00 3.86
2124 2199 5.047590 TCTGGAAATAACTGTAGCTTCGTCA 60.048 40.000 0.00 0.00 0.00 4.35
2126 2201 4.329256 GGAAATAACTGTAGCTTCGTCACC 59.671 45.833 0.00 0.00 0.00 4.02
2129 2204 0.522180 ACTGTAGCTTCGTCACCGAG 59.478 55.000 0.00 0.00 45.24 4.63
2133 2208 1.134560 GTAGCTTCGTCACCGAGGAAT 59.865 52.381 0.00 0.00 45.24 3.01
2134 2209 1.471119 AGCTTCGTCACCGAGGAATA 58.529 50.000 0.00 0.00 45.24 1.75
2135 2210 1.134560 AGCTTCGTCACCGAGGAATAC 59.865 52.381 0.00 0.00 45.24 1.89
2136 2211 1.134560 GCTTCGTCACCGAGGAATACT 59.865 52.381 0.00 0.00 45.24 2.12
2137 2212 2.798680 CTTCGTCACCGAGGAATACTG 58.201 52.381 0.00 0.00 45.24 2.74
2138 2213 0.454600 TCGTCACCGAGGAATACTGC 59.545 55.000 0.00 0.00 38.40 4.40
2139 2214 0.456221 CGTCACCGAGGAATACTGCT 59.544 55.000 0.00 0.00 35.63 4.24
2140 2215 1.135083 CGTCACCGAGGAATACTGCTT 60.135 52.381 0.00 0.00 35.63 3.91
2141 2216 2.541556 GTCACCGAGGAATACTGCTTC 58.458 52.381 0.00 0.00 0.00 3.86
2142 2217 1.134367 TCACCGAGGAATACTGCTTCG 59.866 52.381 0.00 0.00 0.00 3.79
2143 2218 1.135083 CACCGAGGAATACTGCTTCGT 60.135 52.381 0.00 0.00 0.00 3.85
2144 2219 1.134560 ACCGAGGAATACTGCTTCGTC 59.865 52.381 0.00 0.00 36.92 4.20
2145 2220 1.405821 CCGAGGAATACTGCTTCGTCT 59.594 52.381 0.00 0.00 37.70 4.18
2146 2221 2.617308 CCGAGGAATACTGCTTCGTCTA 59.383 50.000 0.00 0.00 37.70 2.59
2147 2222 3.548415 CCGAGGAATACTGCTTCGTCTAC 60.548 52.174 0.00 0.00 37.70 2.59
2148 2223 3.064958 CGAGGAATACTGCTTCGTCTACA 59.935 47.826 9.89 0.00 37.70 2.74
2149 2224 4.352887 GAGGAATACTGCTTCGTCTACAC 58.647 47.826 6.20 0.00 37.18 2.90
2150 2225 4.017808 AGGAATACTGCTTCGTCTACACT 58.982 43.478 0.00 0.00 0.00 3.55
2151 2226 5.191426 AGGAATACTGCTTCGTCTACACTA 58.809 41.667 0.00 0.00 0.00 2.74
2152 2227 5.297278 AGGAATACTGCTTCGTCTACACTAG 59.703 44.000 0.00 0.00 0.00 2.57
2153 2228 2.923605 ACTGCTTCGTCTACACTAGC 57.076 50.000 0.00 0.00 0.00 3.42
2154 2229 2.160205 ACTGCTTCGTCTACACTAGCA 58.840 47.619 0.00 0.00 36.22 3.49
2155 2230 2.095161 ACTGCTTCGTCTACACTAGCAC 60.095 50.000 0.00 0.00 34.64 4.40
2156 2231 1.201647 TGCTTCGTCTACACTAGCACC 59.798 52.381 0.00 0.00 34.64 5.01
2157 2232 1.201647 GCTTCGTCTACACTAGCACCA 59.798 52.381 0.00 0.00 31.48 4.17
2158 2233 2.864968 CTTCGTCTACACTAGCACCAC 58.135 52.381 0.00 0.00 0.00 4.16
2159 2234 0.800631 TCGTCTACACTAGCACCACG 59.199 55.000 0.00 0.00 0.00 4.94
2160 2235 0.797249 CGTCTACACTAGCACCACGC 60.797 60.000 0.00 0.00 42.91 5.34
2204 2279 9.877178 TTTACAAGGCAAAAACTTTATTTCTCA 57.123 25.926 0.00 0.00 0.00 3.27
2205 2280 9.877178 TTACAAGGCAAAAACTTTATTTCTCAA 57.123 25.926 0.00 0.00 0.00 3.02
2206 2281 8.785329 ACAAGGCAAAAACTTTATTTCTCAAA 57.215 26.923 0.00 0.00 0.00 2.69
2207 2282 9.394767 ACAAGGCAAAAACTTTATTTCTCAAAT 57.605 25.926 0.00 0.00 34.90 2.32
2221 2296 7.588143 ATTTCTCAAATAATAGCGAGATCGG 57.412 36.000 4.18 0.00 40.23 4.18
2222 2297 5.959618 TCTCAAATAATAGCGAGATCGGA 57.040 39.130 4.18 0.00 40.23 4.55
2223 2298 5.944013 TCTCAAATAATAGCGAGATCGGAG 58.056 41.667 4.18 0.00 40.23 4.63
2224 2299 5.060662 TCAAATAATAGCGAGATCGGAGG 57.939 43.478 4.18 0.00 40.23 4.30
2225 2300 4.523173 TCAAATAATAGCGAGATCGGAGGT 59.477 41.667 4.18 0.00 40.23 3.85
2226 2301 4.442375 AATAATAGCGAGATCGGAGGTG 57.558 45.455 4.18 0.00 40.23 4.00
2227 2302 1.982660 AATAGCGAGATCGGAGGTGA 58.017 50.000 4.18 0.00 40.23 4.02
2228 2303 2.208132 ATAGCGAGATCGGAGGTGAT 57.792 50.000 4.18 0.00 40.23 3.06
2229 2304 1.982660 TAGCGAGATCGGAGGTGATT 58.017 50.000 4.18 0.00 40.23 2.57
2230 2305 1.115467 AGCGAGATCGGAGGTGATTT 58.885 50.000 4.18 0.00 40.23 2.17
2231 2306 2.307768 AGCGAGATCGGAGGTGATTTA 58.692 47.619 4.18 0.00 40.23 1.40
2232 2307 2.894126 AGCGAGATCGGAGGTGATTTAT 59.106 45.455 4.18 0.00 40.23 1.40
2233 2308 3.057174 AGCGAGATCGGAGGTGATTTATC 60.057 47.826 4.18 0.00 40.23 1.75
2234 2309 3.305403 GCGAGATCGGAGGTGATTTATCA 60.305 47.826 4.18 0.00 40.23 2.15
2235 2310 4.796290 GCGAGATCGGAGGTGATTTATCAA 60.796 45.833 4.18 0.00 37.99 2.57
2236 2311 5.289595 CGAGATCGGAGGTGATTTATCAAA 58.710 41.667 0.00 0.00 35.57 2.69
2237 2312 5.928839 CGAGATCGGAGGTGATTTATCAAAT 59.071 40.000 0.00 0.00 35.57 2.32
2238 2313 6.128715 CGAGATCGGAGGTGATTTATCAAATG 60.129 42.308 0.00 0.00 35.57 2.32
2239 2314 6.830912 AGATCGGAGGTGATTTATCAAATGA 58.169 36.000 0.00 0.00 38.75 2.57
2240 2315 7.456725 AGATCGGAGGTGATTTATCAAATGAT 58.543 34.615 1.01 1.01 38.75 2.45
2241 2316 6.866010 TCGGAGGTGATTTATCAAATGATG 57.134 37.500 6.17 0.00 38.75 3.07
2242 2317 6.591001 TCGGAGGTGATTTATCAAATGATGA 58.409 36.000 6.17 0.00 43.67 2.92
2243 2318 6.707608 TCGGAGGTGATTTATCAAATGATGAG 59.292 38.462 6.17 0.00 42.53 2.90
2244 2319 6.707608 CGGAGGTGATTTATCAAATGATGAGA 59.292 38.462 6.17 0.00 42.53 3.27
2245 2320 7.227314 CGGAGGTGATTTATCAAATGATGAGAA 59.773 37.037 6.17 0.00 42.53 2.87
2256 2331 7.320443 TCAAATGATGAGAAATAAAGTCCGG 57.680 36.000 0.00 0.00 33.04 5.14
2257 2332 6.318648 TCAAATGATGAGAAATAAAGTCCGGG 59.681 38.462 0.00 0.00 33.04 5.73
2258 2333 5.630415 ATGATGAGAAATAAAGTCCGGGA 57.370 39.130 0.00 0.00 0.00 5.14
2259 2334 5.630415 TGATGAGAAATAAAGTCCGGGAT 57.370 39.130 0.00 0.00 0.00 3.85
2260 2335 6.740944 TGATGAGAAATAAAGTCCGGGATA 57.259 37.500 0.00 0.00 0.00 2.59
2261 2336 6.759272 TGATGAGAAATAAAGTCCGGGATAG 58.241 40.000 0.00 0.00 0.00 2.08
2262 2337 4.957296 TGAGAAATAAAGTCCGGGATAGC 58.043 43.478 0.00 0.00 0.00 2.97
2263 2338 4.407621 TGAGAAATAAAGTCCGGGATAGCA 59.592 41.667 0.00 0.00 0.00 3.49
2264 2339 5.071788 TGAGAAATAAAGTCCGGGATAGCAT 59.928 40.000 0.00 0.00 0.00 3.79
2265 2340 5.552178 AGAAATAAAGTCCGGGATAGCATC 58.448 41.667 0.00 0.00 0.00 3.91
2266 2341 5.308237 AGAAATAAAGTCCGGGATAGCATCT 59.692 40.000 0.00 0.00 0.00 2.90
2267 2342 5.568620 AATAAAGTCCGGGATAGCATCTT 57.431 39.130 0.00 0.00 0.00 2.40
2268 2343 3.477210 AAAGTCCGGGATAGCATCTTC 57.523 47.619 0.00 0.00 0.00 2.87
2269 2344 1.343069 AGTCCGGGATAGCATCTTCC 58.657 55.000 0.00 0.00 0.00 3.46
2270 2345 0.321996 GTCCGGGATAGCATCTTCCC 59.678 60.000 0.00 0.00 46.96 3.97
2276 2351 3.845781 GGATAGCATCTTCCCAGAACA 57.154 47.619 0.00 0.00 30.76 3.18
2277 2352 4.363991 GGATAGCATCTTCCCAGAACAT 57.636 45.455 0.00 0.00 30.76 2.71
2278 2353 4.723309 GGATAGCATCTTCCCAGAACATT 58.277 43.478 0.00 0.00 30.76 2.71
2279 2354 5.136105 GGATAGCATCTTCCCAGAACATTT 58.864 41.667 0.00 0.00 30.76 2.32
2280 2355 5.009410 GGATAGCATCTTCCCAGAACATTTG 59.991 44.000 0.00 0.00 30.76 2.32
2281 2356 4.038271 AGCATCTTCCCAGAACATTTGA 57.962 40.909 0.00 0.00 30.76 2.69
2282 2357 4.410099 AGCATCTTCCCAGAACATTTGAA 58.590 39.130 0.00 0.00 30.76 2.69
2283 2358 5.021458 AGCATCTTCCCAGAACATTTGAAT 58.979 37.500 0.00 0.00 30.76 2.57
2284 2359 6.189859 AGCATCTTCCCAGAACATTTGAATA 58.810 36.000 0.00 0.00 30.76 1.75
2285 2360 6.096001 AGCATCTTCCCAGAACATTTGAATAC 59.904 38.462 0.00 0.00 30.76 1.89
2286 2361 6.096001 GCATCTTCCCAGAACATTTGAATACT 59.904 38.462 0.00 0.00 30.76 2.12
2287 2362 7.363268 GCATCTTCCCAGAACATTTGAATACTT 60.363 37.037 0.00 0.00 30.76 2.24
2288 2363 8.526147 CATCTTCCCAGAACATTTGAATACTTT 58.474 33.333 0.00 0.00 30.76 2.66
2289 2364 8.477419 TCTTCCCAGAACATTTGAATACTTTT 57.523 30.769 0.00 0.00 0.00 2.27
2290 2365 8.576442 TCTTCCCAGAACATTTGAATACTTTTC 58.424 33.333 0.00 0.00 0.00 2.29
2291 2366 7.227049 TCCCAGAACATTTGAATACTTTTCC 57.773 36.000 0.00 0.00 0.00 3.13
2292 2367 6.210584 TCCCAGAACATTTGAATACTTTTCCC 59.789 38.462 0.00 0.00 0.00 3.97
2293 2368 6.092748 CCAGAACATTTGAATACTTTTCCCG 58.907 40.000 0.00 0.00 0.00 5.14
2294 2369 5.572896 CAGAACATTTGAATACTTTTCCCGC 59.427 40.000 0.00 0.00 0.00 6.13
2295 2370 5.242838 AGAACATTTGAATACTTTTCCCGCA 59.757 36.000 0.00 0.00 0.00 5.69
2296 2371 5.659440 ACATTTGAATACTTTTCCCGCAT 57.341 34.783 0.00 0.00 0.00 4.73
2297 2372 6.767524 ACATTTGAATACTTTTCCCGCATA 57.232 33.333 0.00 0.00 0.00 3.14
2298 2373 7.164230 ACATTTGAATACTTTTCCCGCATAA 57.836 32.000 0.00 0.00 0.00 1.90
2299 2374 7.607250 ACATTTGAATACTTTTCCCGCATAAA 58.393 30.769 0.00 0.00 0.00 1.40
2300 2375 8.091449 ACATTTGAATACTTTTCCCGCATAAAA 58.909 29.630 0.00 0.00 0.00 1.52
2301 2376 8.930760 CATTTGAATACTTTTCCCGCATAAAAA 58.069 29.630 0.00 0.00 0.00 1.94
2339 2414 5.878406 TTTTTGGGCTAATCAAAAGGTGA 57.122 34.783 0.00 0.00 42.59 4.02
2371 2446 3.786516 TTTTTGTCGGAGGACCAAAAC 57.213 42.857 0.00 0.00 40.68 2.43
2372 2447 1.682740 TTTGTCGGAGGACCAAAACC 58.317 50.000 0.00 0.00 42.73 3.27
2373 2448 0.533308 TTGTCGGAGGACCAAAACCG 60.533 55.000 11.38 11.38 42.73 4.44
2374 2449 1.070275 GTCGGAGGACCAAAACCGT 59.930 57.895 15.25 0.00 44.72 4.83
2375 2450 1.070105 TCGGAGGACCAAAACCGTG 59.930 57.895 15.25 0.00 44.72 4.94
2376 2451 1.964373 CGGAGGACCAAAACCGTGG 60.964 63.158 9.99 0.00 44.92 4.94
2377 2452 2.265904 GGAGGACCAAAACCGTGGC 61.266 63.158 0.00 0.00 43.00 5.01
2378 2453 2.203437 AGGACCAAAACCGTGGCC 60.203 61.111 0.00 0.00 43.00 5.36
2379 2454 3.666253 GGACCAAAACCGTGGCCG 61.666 66.667 0.00 0.00 43.00 6.13
2380 2455 2.592287 GACCAAAACCGTGGCCGA 60.592 61.111 0.00 0.00 43.00 5.54
2381 2456 1.969589 GACCAAAACCGTGGCCGAT 60.970 57.895 0.00 0.00 43.00 4.18
2382 2457 1.918868 GACCAAAACCGTGGCCGATC 61.919 60.000 0.00 0.00 43.00 3.69
2383 2458 1.969064 CCAAAACCGTGGCCGATCA 60.969 57.895 0.00 0.00 35.63 2.92
2384 2459 1.519751 CCAAAACCGTGGCCGATCAA 61.520 55.000 0.00 0.00 35.63 2.57
2398 2473 0.465705 GATCAACTCCGCCTGGATGA 59.534 55.000 0.00 0.00 45.33 2.92
2408 2483 1.525923 CCTGGATGAGGAGTGGCAG 59.474 63.158 0.00 0.00 46.33 4.85
2450 2529 2.032681 ACCCCAAGCTCAGCGAAC 59.967 61.111 0.00 0.00 0.00 3.95
2518 2597 1.298859 GGACGGAGCGATTGCAAAGT 61.299 55.000 1.71 3.27 46.23 2.66
2586 2665 1.885850 GTTCGTGGCAGGAACGTGT 60.886 57.895 30.03 0.00 41.70 4.49
2719 2798 1.258445 ACTGTCTGCGGTAGGGAAGG 61.258 60.000 0.00 0.00 31.28 3.46
2809 2888 5.916883 ACTCAATTTCAAGAATGCAAAGTCG 59.083 36.000 0.00 0.00 0.00 4.18
2840 2919 1.902840 CGTTCCGCAAACAAAGTTGT 58.097 45.000 0.00 0.00 44.72 3.32
2865 2946 2.621070 AGACTTGCTAGGGAAGGTTGA 58.379 47.619 0.00 0.00 0.00 3.18
2895 2976 5.106442 TCGTTATGTCATGTATGGTGTCAC 58.894 41.667 0.00 0.00 0.00 3.67
2958 3040 6.377146 TGGAGGTTTGGAGCACTAAATAAATC 59.623 38.462 0.00 0.00 0.00 2.17
2997 3079 1.322442 AAAAAGAGTGCAGGTGGAGC 58.678 50.000 0.00 0.00 0.00 4.70
2998 3080 0.475906 AAAAGAGTGCAGGTGGAGCT 59.524 50.000 0.00 0.00 0.00 4.09
2999 3081 0.250640 AAAGAGTGCAGGTGGAGCTG 60.251 55.000 0.00 1.33 0.00 4.24
3000 3082 2.744768 AAGAGTGCAGGTGGAGCTGC 62.745 60.000 21.21 21.21 45.89 5.25
3006 3088 4.039092 AGGTGGAGCTGCGCCAAT 62.039 61.111 35.31 16.61 34.65 3.16
3007 3089 3.064324 GGTGGAGCTGCGCCAATT 61.064 61.111 30.57 0.00 34.65 2.32
3008 3090 2.639327 GGTGGAGCTGCGCCAATTT 61.639 57.895 30.57 0.00 34.65 1.82
3009 3091 1.290009 GTGGAGCTGCGCCAATTTT 59.710 52.632 26.61 0.00 34.65 1.82
3010 3092 0.319813 GTGGAGCTGCGCCAATTTTT 60.320 50.000 26.61 0.00 34.65 1.94
3011 3093 1.067915 GTGGAGCTGCGCCAATTTTTA 60.068 47.619 26.61 0.00 34.65 1.52
3012 3094 1.824230 TGGAGCTGCGCCAATTTTTAT 59.176 42.857 23.05 0.00 28.67 1.40
3013 3095 2.233431 TGGAGCTGCGCCAATTTTTATT 59.767 40.909 23.05 0.00 28.67 1.40
3014 3096 3.261580 GGAGCTGCGCCAATTTTTATTT 58.738 40.909 17.92 0.00 0.00 1.40
3015 3097 3.684305 GGAGCTGCGCCAATTTTTATTTT 59.316 39.130 17.92 0.00 0.00 1.82
3016 3098 4.154015 GGAGCTGCGCCAATTTTTATTTTT 59.846 37.500 17.92 0.00 0.00 1.94
3017 3099 5.350091 GGAGCTGCGCCAATTTTTATTTTTA 59.650 36.000 17.92 0.00 0.00 1.52
3018 3100 6.407475 AGCTGCGCCAATTTTTATTTTTAG 57.593 33.333 4.18 0.00 0.00 1.85
3019 3101 5.931724 AGCTGCGCCAATTTTTATTTTTAGT 59.068 32.000 4.18 0.00 0.00 2.24
3020 3102 6.426633 AGCTGCGCCAATTTTTATTTTTAGTT 59.573 30.769 4.18 0.00 0.00 2.24
3021 3103 7.041440 AGCTGCGCCAATTTTTATTTTTAGTTT 60.041 29.630 4.18 0.00 0.00 2.66
3022 3104 7.589587 GCTGCGCCAATTTTTATTTTTAGTTTT 59.410 29.630 4.18 0.00 0.00 2.43
3049 3131 8.719560 TTTTTATTTTTACGAAAACCTTGCCT 57.280 26.923 0.00 0.00 37.56 4.75
3050 3132 7.933728 TTTATTTTTACGAAAACCTTGCCTC 57.066 32.000 0.00 0.00 37.56 4.70
3051 3133 3.612472 TTTTACGAAAACCTTGCCTCG 57.388 42.857 0.00 0.00 37.33 4.63
3052 3134 0.869730 TTACGAAAACCTTGCCTCGC 59.130 50.000 0.00 0.00 34.70 5.03
3053 3135 0.249953 TACGAAAACCTTGCCTCGCA 60.250 50.000 0.00 0.00 36.47 5.10
3054 3136 1.098712 ACGAAAACCTTGCCTCGCAA 61.099 50.000 0.00 0.00 46.80 4.85
3055 3137 8.824932 TTTTTACGAAAACCTTGCCTCGCAAT 62.825 38.462 0.00 0.00 37.57 3.56
3064 3146 2.565210 TGCCTCGCAATTGCATTAAG 57.435 45.000 28.77 18.57 42.21 1.85
3065 3147 1.134753 TGCCTCGCAATTGCATTAAGG 59.865 47.619 28.77 25.74 42.21 2.69
3066 3148 1.405105 GCCTCGCAATTGCATTAAGGA 59.595 47.619 28.54 17.99 42.21 3.36
3067 3149 2.159254 GCCTCGCAATTGCATTAAGGAA 60.159 45.455 28.54 8.25 42.21 3.36
3068 3150 3.675775 GCCTCGCAATTGCATTAAGGAAA 60.676 43.478 28.54 7.45 42.21 3.13
3069 3151 4.107622 CCTCGCAATTGCATTAAGGAAAG 58.892 43.478 28.77 9.48 42.21 2.62
3070 3152 3.510719 TCGCAATTGCATTAAGGAAAGC 58.489 40.909 28.77 0.00 42.21 3.51
3071 3153 2.279659 CGCAATTGCATTAAGGAAAGCG 59.720 45.455 28.77 7.37 44.49 4.68
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 3.247411 TCCGCGCACATAATTAATCACTG 59.753 43.478 8.75 0.00 0.00 3.66
40 41 2.223144 GCTCCGCGCACATAATTAATCA 59.777 45.455 8.75 0.00 38.92 2.57
62 63 5.277058 CGATCTTGGTGTAGATTTAGCTTGC 60.277 44.000 0.00 0.00 35.06 4.01
86 88 1.745489 GGAATGTCGGCCACCTGTC 60.745 63.158 2.24 0.00 0.00 3.51
159 161 1.702401 TGACAGCACCATAAGACCCAA 59.298 47.619 0.00 0.00 0.00 4.12
168 170 0.543277 ATCACGGATGACAGCACCAT 59.457 50.000 0.00 0.00 37.79 3.55
235 237 1.626654 CTGCCGTGAACACATCGACC 61.627 60.000 5.80 0.00 0.00 4.79
237 239 0.032815 TTCTGCCGTGAACACATCGA 59.967 50.000 5.80 0.00 0.00 3.59
238 240 0.439985 CTTCTGCCGTGAACACATCG 59.560 55.000 5.80 0.00 0.00 3.84
266 268 1.889545 AGCTTCAGTCCTTCAAGCAC 58.110 50.000 5.73 0.00 44.24 4.40
314 316 6.071672 ACTGTGATATTATCCGATCTCACCAG 60.072 42.308 1.27 5.67 34.20 4.00
472 478 0.469070 CCATCTAGCCAGCTCAGCTT 59.531 55.000 12.79 0.00 41.83 3.74
473 479 1.409251 CCCATCTAGCCAGCTCAGCT 61.409 60.000 12.24 12.24 44.49 4.24
474 480 1.071128 CCCATCTAGCCAGCTCAGC 59.929 63.158 0.00 0.00 0.00 4.26
475 481 0.762082 TCCCCATCTAGCCAGCTCAG 60.762 60.000 0.00 0.00 0.00 3.35
476 482 1.050988 GTCCCCATCTAGCCAGCTCA 61.051 60.000 0.00 0.00 0.00 4.26
521 527 5.470098 CACAATAAAATCAGGAGGGGTATCG 59.530 44.000 0.00 0.00 0.00 2.92
539 546 7.646548 ATTGTCTGCTAGTAGACTCACAATA 57.353 36.000 32.36 14.55 45.70 1.90
607 617 3.130160 GCAAGCGAAGGAGCCCTG 61.130 66.667 0.00 0.00 38.01 4.45
609 619 2.821810 GAGCAAGCGAAGGAGCCC 60.822 66.667 0.00 0.00 38.01 5.19
610 620 2.105466 CAGAGCAAGCGAAGGAGCC 61.105 63.158 0.00 0.00 38.01 4.70
611 621 1.079543 TCAGAGCAAGCGAAGGAGC 60.080 57.895 0.00 0.00 37.41 4.70
612 622 1.083242 GCTCAGAGCAAGCGAAGGAG 61.083 60.000 18.17 0.00 41.89 3.69
613 623 1.079543 GCTCAGAGCAAGCGAAGGA 60.080 57.895 18.17 0.00 41.89 3.36
614 624 1.079266 AGCTCAGAGCAAGCGAAGG 60.079 57.895 24.64 0.00 45.56 3.46
615 625 0.389556 TGAGCTCAGAGCAAGCGAAG 60.390 55.000 24.64 0.00 45.56 3.79
616 626 0.389556 CTGAGCTCAGAGCAAGCGAA 60.390 55.000 35.69 0.00 45.56 4.70
617 627 1.214853 CTGAGCTCAGAGCAAGCGA 59.785 57.895 35.69 0.00 45.56 4.93
618 628 2.454464 GCTGAGCTCAGAGCAAGCG 61.454 63.158 41.20 18.14 45.56 4.68
619 629 2.454464 CGCTGAGCTCAGAGCAAGC 61.454 63.158 41.20 28.27 45.56 4.01
620 630 1.810441 CCGCTGAGCTCAGAGCAAG 60.810 63.158 41.20 23.94 45.56 4.01
621 631 2.223200 CTCCGCTGAGCTCAGAGCAA 62.223 60.000 41.20 27.36 45.56 3.91
622 632 2.677875 TCCGCTGAGCTCAGAGCA 60.678 61.111 41.20 26.50 45.56 4.26
623 633 1.943116 TTCTCCGCTGAGCTCAGAGC 61.943 60.000 41.20 28.58 46.59 4.09
624 634 0.179140 GTTCTCCGCTGAGCTCAGAG 60.179 60.000 41.20 37.06 46.59 3.35
625 635 0.895559 TGTTCTCCGCTGAGCTCAGA 60.896 55.000 41.20 23.20 46.59 3.27
626 636 0.735632 GTGTTCTCCGCTGAGCTCAG 60.736 60.000 34.82 34.82 46.40 3.35
627 637 1.290324 GTGTTCTCCGCTGAGCTCA 59.710 57.895 17.19 17.19 38.58 4.26
628 638 1.803519 CGTGTTCTCCGCTGAGCTC 60.804 63.158 6.82 6.82 38.58 4.09
629 639 2.206515 CTCGTGTTCTCCGCTGAGCT 62.207 60.000 1.78 0.00 38.58 4.09
630 640 1.803519 CTCGTGTTCTCCGCTGAGC 60.804 63.158 0.00 0.00 38.58 4.26
631 641 0.455295 GACTCGTGTTCTCCGCTGAG 60.455 60.000 0.00 0.00 40.17 3.35
632 642 1.170290 TGACTCGTGTTCTCCGCTGA 61.170 55.000 0.00 0.00 0.00 4.26
633 643 0.318699 TTGACTCGTGTTCTCCGCTG 60.319 55.000 0.00 0.00 0.00 5.18
634 644 0.387929 TTTGACTCGTGTTCTCCGCT 59.612 50.000 0.00 0.00 0.00 5.52
635 645 0.507358 GTTTGACTCGTGTTCTCCGC 59.493 55.000 0.00 0.00 0.00 5.54
636 646 1.847818 TGTTTGACTCGTGTTCTCCG 58.152 50.000 0.00 0.00 0.00 4.63
637 647 3.454375 TCTTGTTTGACTCGTGTTCTCC 58.546 45.455 0.00 0.00 0.00 3.71
638 648 4.328983 TGTTCTTGTTTGACTCGTGTTCTC 59.671 41.667 0.00 0.00 0.00 2.87
639 649 4.092968 GTGTTCTTGTTTGACTCGTGTTCT 59.907 41.667 0.00 0.00 0.00 3.01
640 650 4.331962 GTGTTCTTGTTTGACTCGTGTTC 58.668 43.478 0.00 0.00 0.00 3.18
641 651 3.126343 GGTGTTCTTGTTTGACTCGTGTT 59.874 43.478 0.00 0.00 0.00 3.32
642 652 2.676342 GGTGTTCTTGTTTGACTCGTGT 59.324 45.455 0.00 0.00 0.00 4.49
643 653 2.936498 AGGTGTTCTTGTTTGACTCGTG 59.064 45.455 0.00 0.00 0.00 4.35
644 654 3.195661 GAGGTGTTCTTGTTTGACTCGT 58.804 45.455 0.00 0.00 0.00 4.18
645 655 2.218759 CGAGGTGTTCTTGTTTGACTCG 59.781 50.000 0.00 0.00 40.19 4.18
646 656 3.195661 ACGAGGTGTTCTTGTTTGACTC 58.804 45.455 0.00 0.00 36.75 3.36
647 657 3.118738 AGACGAGGTGTTCTTGTTTGACT 60.119 43.478 0.00 0.00 40.11 3.41
648 658 3.195661 AGACGAGGTGTTCTTGTTTGAC 58.804 45.455 0.00 0.00 40.11 3.18
649 659 3.536956 AGACGAGGTGTTCTTGTTTGA 57.463 42.857 0.00 0.00 40.11 2.69
650 660 4.025979 GTGTAGACGAGGTGTTCTTGTTTG 60.026 45.833 0.00 0.00 40.11 2.93
651 661 4.117685 GTGTAGACGAGGTGTTCTTGTTT 58.882 43.478 0.00 0.00 40.11 2.83
652 662 3.714391 GTGTAGACGAGGTGTTCTTGTT 58.286 45.455 0.00 0.00 40.11 2.83
653 663 3.366440 GTGTAGACGAGGTGTTCTTGT 57.634 47.619 0.00 0.00 42.62 3.16
666 676 6.648725 ATTGATTAGCTGTTTCGTGTAGAC 57.351 37.500 0.00 0.00 0.00 2.59
717 727 7.786464 ACCCAAAGCTATCCAGATATCATTTTT 59.214 33.333 5.32 0.00 0.00 1.94
718 728 7.300658 ACCCAAAGCTATCCAGATATCATTTT 58.699 34.615 5.32 0.00 0.00 1.82
719 729 6.856757 ACCCAAAGCTATCCAGATATCATTT 58.143 36.000 5.32 0.00 0.00 2.32
724 734 5.912149 TCAACCCAAAGCTATCCAGATAT 57.088 39.130 0.00 0.00 0.00 1.63
780 790 6.609212 AGCTGTCCAGAGAGATAATTTCTACA 59.391 38.462 0.00 0.00 33.74 2.74
789 799 5.126222 CAGTGTTTAGCTGTCCAGAGAGATA 59.874 44.000 0.00 0.00 0.00 1.98
796 807 6.560253 AATTAACAGTGTTTAGCTGTCCAG 57.440 37.500 14.90 0.00 45.36 3.86
811 822 7.600752 GCTAGCTTAGGTCCAGATAATTAACAG 59.399 40.741 7.70 0.00 0.00 3.16
852 863 6.273071 ACAATTTCTACTGCCAAACTTCAAC 58.727 36.000 0.00 0.00 0.00 3.18
875 886 3.373439 GTCAGCTGATGGAAATGTCAGAC 59.627 47.826 21.47 0.00 32.38 3.51
876 887 3.008266 TGTCAGCTGATGGAAATGTCAGA 59.992 43.478 21.47 0.00 32.38 3.27
880 891 4.147321 AGTTTGTCAGCTGATGGAAATGT 58.853 39.130 21.47 8.34 0.00 2.71
907 922 4.933400 GCCGAGAAGTTACTGGTTTCATAA 59.067 41.667 0.00 0.00 0.00 1.90
920 935 1.272490 TCATCAACTCGCCGAGAAGTT 59.728 47.619 22.80 2.31 33.32 2.66
955 971 9.170734 CTCCGGTAGTATATATTGTAGTAGCAA 57.829 37.037 0.00 0.00 0.00 3.91
962 992 6.548622 GGATGGCTCCGGTAGTATATATTGTA 59.451 42.308 0.00 0.00 0.00 2.41
963 993 5.363005 GGATGGCTCCGGTAGTATATATTGT 59.637 44.000 0.00 0.00 0.00 2.71
995 1025 1.425066 AGTTGGAGTTTGGGCTGATCA 59.575 47.619 0.00 0.00 0.00 2.92
1001 1031 1.363807 GTGCAGTTGGAGTTTGGGC 59.636 57.895 0.00 0.00 0.00 5.36
1012 1042 1.604593 GGACATGGCTGGTGCAGTT 60.605 57.895 0.00 0.00 41.91 3.16
1445 1490 1.671379 GTGAAAGGACCCAGGCGAC 60.671 63.158 0.00 0.00 0.00 5.19
1618 1690 0.195096 TCCCCAGGAAGTAAGGGTGT 59.805 55.000 0.00 0.00 41.16 4.16
1624 1696 1.601419 CGTCGCTCCCCAGGAAGTAA 61.601 60.000 0.00 0.00 0.00 2.24
1726 1798 2.043852 ATGAGCGGGTCGTCCTCT 60.044 61.111 2.41 0.00 0.00 3.69
1883 1955 2.513204 CTGCCACATCTCCGCCTG 60.513 66.667 0.00 0.00 0.00 4.85
2031 2103 4.877282 AGCTACACAGTTGACTCTTCTTC 58.123 43.478 0.00 0.00 0.00 2.87
2032 2104 4.946478 AGCTACACAGTTGACTCTTCTT 57.054 40.909 0.00 0.00 0.00 2.52
2033 2105 4.342378 TGAAGCTACACAGTTGACTCTTCT 59.658 41.667 0.00 0.00 31.83 2.85
2099 2171 5.169295 ACGAAGCTACAGTTATTTCCAGAC 58.831 41.667 0.00 0.00 0.00 3.51
2101 2173 5.062308 GTGACGAAGCTACAGTTATTTCCAG 59.938 44.000 0.00 0.00 0.00 3.86
2104 2176 5.451828 GGTGACGAAGCTACAGTTATTTC 57.548 43.478 0.00 0.00 0.00 2.17
2124 2199 1.134560 GACGAAGCAGTATTCCTCGGT 59.865 52.381 0.00 0.00 0.00 4.69
2126 2201 2.853731 AGACGAAGCAGTATTCCTCG 57.146 50.000 0.00 0.00 0.00 4.63
2129 2204 4.373348 AGTGTAGACGAAGCAGTATTCC 57.627 45.455 0.00 0.00 0.00 3.01
2133 2208 3.126514 GTGCTAGTGTAGACGAAGCAGTA 59.873 47.826 18.91 0.68 42.83 2.74
2134 2209 2.095161 GTGCTAGTGTAGACGAAGCAGT 60.095 50.000 18.91 0.00 42.83 4.40
2135 2210 2.520979 GTGCTAGTGTAGACGAAGCAG 58.479 52.381 18.91 0.42 42.83 4.24
2136 2211 1.201647 GGTGCTAGTGTAGACGAAGCA 59.798 52.381 15.84 15.84 41.13 3.91
2137 2212 1.201647 TGGTGCTAGTGTAGACGAAGC 59.798 52.381 11.80 11.80 36.83 3.86
2138 2213 2.728225 CGTGGTGCTAGTGTAGACGAAG 60.728 54.545 0.00 0.00 0.00 3.79
2139 2214 1.198408 CGTGGTGCTAGTGTAGACGAA 59.802 52.381 0.00 0.00 0.00 3.85
2140 2215 0.800631 CGTGGTGCTAGTGTAGACGA 59.199 55.000 0.00 0.00 0.00 4.20
2141 2216 0.797249 GCGTGGTGCTAGTGTAGACG 60.797 60.000 0.00 0.00 41.73 4.18
2142 2217 3.031660 GCGTGGTGCTAGTGTAGAC 57.968 57.895 0.00 0.00 41.73 2.59
2178 2253 9.877178 TGAGAAATAAAGTTTTTGCCTTGTAAA 57.123 25.926 0.00 0.00 0.00 2.01
2179 2254 9.877178 TTGAGAAATAAAGTTTTTGCCTTGTAA 57.123 25.926 0.00 0.00 0.00 2.41
2180 2255 9.877178 TTTGAGAAATAAAGTTTTTGCCTTGTA 57.123 25.926 0.00 0.00 0.00 2.41
2181 2256 8.785329 TTTGAGAAATAAAGTTTTTGCCTTGT 57.215 26.923 0.00 0.00 0.00 3.16
2195 2270 9.140286 CCGATCTCGCTATTATTTGAGAAATAA 57.860 33.333 4.43 4.43 40.55 1.40
2196 2271 8.520351 TCCGATCTCGCTATTATTTGAGAAATA 58.480 33.333 0.00 0.00 40.55 1.40
2197 2272 7.378966 TCCGATCTCGCTATTATTTGAGAAAT 58.621 34.615 0.00 0.00 40.55 2.17
2198 2273 6.745116 TCCGATCTCGCTATTATTTGAGAAA 58.255 36.000 0.00 0.00 40.55 2.52
2199 2274 6.327279 TCCGATCTCGCTATTATTTGAGAA 57.673 37.500 0.00 0.00 40.55 2.87
2200 2275 5.106118 CCTCCGATCTCGCTATTATTTGAGA 60.106 44.000 0.00 0.00 41.33 3.27
2201 2276 5.098893 CCTCCGATCTCGCTATTATTTGAG 58.901 45.833 0.00 0.00 38.18 3.02
2202 2277 4.523173 ACCTCCGATCTCGCTATTATTTGA 59.477 41.667 0.00 0.00 38.18 2.69
2203 2278 4.623167 CACCTCCGATCTCGCTATTATTTG 59.377 45.833 0.00 0.00 38.18 2.32
2204 2279 4.523173 TCACCTCCGATCTCGCTATTATTT 59.477 41.667 0.00 0.00 38.18 1.40
2205 2280 4.079970 TCACCTCCGATCTCGCTATTATT 58.920 43.478 0.00 0.00 38.18 1.40
2206 2281 3.687125 TCACCTCCGATCTCGCTATTAT 58.313 45.455 0.00 0.00 38.18 1.28
2207 2282 3.136009 TCACCTCCGATCTCGCTATTA 57.864 47.619 0.00 0.00 38.18 0.98
2208 2283 1.982660 TCACCTCCGATCTCGCTATT 58.017 50.000 0.00 0.00 38.18 1.73
2209 2284 2.208132 ATCACCTCCGATCTCGCTAT 57.792 50.000 0.00 0.00 38.18 2.97
2210 2285 1.982660 AATCACCTCCGATCTCGCTA 58.017 50.000 0.00 0.00 38.18 4.26
2211 2286 1.115467 AAATCACCTCCGATCTCGCT 58.885 50.000 0.00 0.00 38.18 4.93
2212 2287 2.795175 TAAATCACCTCCGATCTCGC 57.205 50.000 0.00 0.00 38.18 5.03
2213 2288 4.505313 TGATAAATCACCTCCGATCTCG 57.495 45.455 0.00 0.00 39.44 4.04
2214 2289 6.931281 TCATTTGATAAATCACCTCCGATCTC 59.069 38.462 0.00 0.00 36.36 2.75
2215 2290 6.830912 TCATTTGATAAATCACCTCCGATCT 58.169 36.000 0.00 0.00 36.36 2.75
2216 2291 7.388776 TCATCATTTGATAAATCACCTCCGATC 59.611 37.037 0.00 0.00 36.36 3.69
2217 2292 7.226441 TCATCATTTGATAAATCACCTCCGAT 58.774 34.615 0.00 0.00 36.36 4.18
2218 2293 6.591001 TCATCATTTGATAAATCACCTCCGA 58.409 36.000 0.00 0.00 36.36 4.55
2219 2294 6.707608 TCTCATCATTTGATAAATCACCTCCG 59.292 38.462 0.00 0.00 36.36 4.63
2220 2295 8.455903 TTCTCATCATTTGATAAATCACCTCC 57.544 34.615 0.00 0.00 36.36 4.30
2230 2305 9.056005 CCGGACTTTATTTCTCATCATTTGATA 57.944 33.333 0.00 0.00 32.72 2.15
2231 2306 7.013655 CCCGGACTTTATTTCTCATCATTTGAT 59.986 37.037 0.73 0.00 32.72 2.57
2232 2307 6.318648 CCCGGACTTTATTTCTCATCATTTGA 59.681 38.462 0.73 0.00 0.00 2.69
2233 2308 6.318648 TCCCGGACTTTATTTCTCATCATTTG 59.681 38.462 0.73 0.00 0.00 2.32
2234 2309 6.423182 TCCCGGACTTTATTTCTCATCATTT 58.577 36.000 0.73 0.00 0.00 2.32
2235 2310 6.001449 TCCCGGACTTTATTTCTCATCATT 57.999 37.500 0.73 0.00 0.00 2.57
2236 2311 5.630415 TCCCGGACTTTATTTCTCATCAT 57.370 39.130 0.73 0.00 0.00 2.45
2237 2312 5.630415 ATCCCGGACTTTATTTCTCATCA 57.370 39.130 0.73 0.00 0.00 3.07
2238 2313 5.639931 GCTATCCCGGACTTTATTTCTCATC 59.360 44.000 0.73 0.00 0.00 2.92
2239 2314 5.071788 TGCTATCCCGGACTTTATTTCTCAT 59.928 40.000 0.73 0.00 0.00 2.90
2240 2315 4.407621 TGCTATCCCGGACTTTATTTCTCA 59.592 41.667 0.73 0.00 0.00 3.27
2241 2316 4.957296 TGCTATCCCGGACTTTATTTCTC 58.043 43.478 0.73 0.00 0.00 2.87
2242 2317 5.308237 AGATGCTATCCCGGACTTTATTTCT 59.692 40.000 0.73 0.00 0.00 2.52
2243 2318 5.552178 AGATGCTATCCCGGACTTTATTTC 58.448 41.667 0.73 0.00 0.00 2.17
2244 2319 5.568620 AGATGCTATCCCGGACTTTATTT 57.431 39.130 0.73 0.00 0.00 1.40
2245 2320 5.513267 GGAAGATGCTATCCCGGACTTTATT 60.513 44.000 0.73 0.00 0.00 1.40
2246 2321 4.020128 GGAAGATGCTATCCCGGACTTTAT 60.020 45.833 0.73 0.00 0.00 1.40
2247 2322 3.323979 GGAAGATGCTATCCCGGACTTTA 59.676 47.826 0.73 0.00 0.00 1.85
2248 2323 2.104963 GGAAGATGCTATCCCGGACTTT 59.895 50.000 0.73 0.00 0.00 2.66
2249 2324 1.694696 GGAAGATGCTATCCCGGACTT 59.305 52.381 0.73 0.00 0.00 3.01
2250 2325 1.343069 GGAAGATGCTATCCCGGACT 58.657 55.000 0.73 0.00 0.00 3.85
2251 2326 0.321996 GGGAAGATGCTATCCCGGAC 59.678 60.000 0.73 0.00 45.56 4.79
2252 2327 2.759985 GGGAAGATGCTATCCCGGA 58.240 57.895 0.73 0.00 45.56 5.14
2256 2331 3.845781 TGTTCTGGGAAGATGCTATCC 57.154 47.619 0.00 0.00 34.85 2.59
2257 2332 5.824624 TCAAATGTTCTGGGAAGATGCTATC 59.175 40.000 0.00 0.00 0.00 2.08
2258 2333 5.759059 TCAAATGTTCTGGGAAGATGCTAT 58.241 37.500 0.00 0.00 0.00 2.97
2259 2334 5.178096 TCAAATGTTCTGGGAAGATGCTA 57.822 39.130 0.00 0.00 0.00 3.49
2260 2335 4.038271 TCAAATGTTCTGGGAAGATGCT 57.962 40.909 0.00 0.00 0.00 3.79
2261 2336 4.789012 TTCAAATGTTCTGGGAAGATGC 57.211 40.909 0.00 0.00 0.00 3.91
2262 2337 7.636150 AGTATTCAAATGTTCTGGGAAGATG 57.364 36.000 0.00 0.00 0.00 2.90
2263 2338 8.655935 AAAGTATTCAAATGTTCTGGGAAGAT 57.344 30.769 0.00 0.00 0.00 2.40
2264 2339 8.477419 AAAAGTATTCAAATGTTCTGGGAAGA 57.523 30.769 0.00 0.00 0.00 2.87
2265 2340 7.814587 GGAAAAGTATTCAAATGTTCTGGGAAG 59.185 37.037 0.00 0.00 0.00 3.46
2266 2341 7.256154 GGGAAAAGTATTCAAATGTTCTGGGAA 60.256 37.037 0.00 0.00 0.00 3.97
2267 2342 6.210584 GGGAAAAGTATTCAAATGTTCTGGGA 59.789 38.462 0.00 0.00 0.00 4.37
2268 2343 6.398095 GGGAAAAGTATTCAAATGTTCTGGG 58.602 40.000 0.00 0.00 0.00 4.45
2269 2344 6.092748 CGGGAAAAGTATTCAAATGTTCTGG 58.907 40.000 0.00 0.00 0.00 3.86
2270 2345 5.572896 GCGGGAAAAGTATTCAAATGTTCTG 59.427 40.000 0.00 0.00 0.00 3.02
2271 2346 5.242838 TGCGGGAAAAGTATTCAAATGTTCT 59.757 36.000 0.00 0.00 0.00 3.01
2272 2347 5.465935 TGCGGGAAAAGTATTCAAATGTTC 58.534 37.500 0.00 0.00 0.00 3.18
2273 2348 5.461032 TGCGGGAAAAGTATTCAAATGTT 57.539 34.783 0.00 0.00 0.00 2.71
2274 2349 5.659440 ATGCGGGAAAAGTATTCAAATGT 57.341 34.783 0.00 0.00 0.00 2.71
2275 2350 8.472683 TTTTATGCGGGAAAAGTATTCAAATG 57.527 30.769 0.00 0.00 0.00 2.32
2317 2392 5.878406 TCACCTTTTGATTAGCCCAAAAA 57.122 34.783 0.00 0.00 41.28 1.94
2351 2426 2.427812 GGTTTTGGTCCTCCGACAAAAA 59.572 45.455 0.00 2.17 45.58 1.94
2352 2427 2.025898 GGTTTTGGTCCTCCGACAAAA 58.974 47.619 0.00 0.00 39.67 2.44
2353 2428 1.682740 GGTTTTGGTCCTCCGACAAA 58.317 50.000 0.00 0.00 41.13 2.83
2354 2429 0.533308 CGGTTTTGGTCCTCCGACAA 60.533 55.000 8.80 0.00 44.86 3.18
2355 2430 1.070105 CGGTTTTGGTCCTCCGACA 59.930 57.895 8.80 0.00 44.86 4.35
2356 2431 1.070275 ACGGTTTTGGTCCTCCGAC 59.930 57.895 17.29 1.08 44.86 4.79
2357 2432 1.070105 CACGGTTTTGGTCCTCCGA 59.930 57.895 17.29 0.00 44.86 4.55
2358 2433 1.964373 CCACGGTTTTGGTCCTCCG 60.964 63.158 11.61 11.61 46.98 4.63
2359 2434 2.265904 GCCACGGTTTTGGTCCTCC 61.266 63.158 0.00 0.00 39.09 4.30
2360 2435 2.265904 GGCCACGGTTTTGGTCCTC 61.266 63.158 0.00 0.00 39.09 3.71
2361 2436 2.203437 GGCCACGGTTTTGGTCCT 60.203 61.111 0.00 0.00 39.09 3.85
2362 2437 3.666253 CGGCCACGGTTTTGGTCC 61.666 66.667 2.24 0.00 38.09 4.46
2363 2438 1.918868 GATCGGCCACGGTTTTGGTC 61.919 60.000 2.24 0.00 39.09 4.02
2364 2439 1.969589 GATCGGCCACGGTTTTGGT 60.970 57.895 2.24 0.00 39.09 3.67
2365 2440 1.519751 TTGATCGGCCACGGTTTTGG 61.520 55.000 2.24 0.00 41.39 3.28
2366 2441 0.386731 GTTGATCGGCCACGGTTTTG 60.387 55.000 2.24 0.00 41.39 2.44
2367 2442 0.536460 AGTTGATCGGCCACGGTTTT 60.536 50.000 2.24 0.00 41.39 2.43
2368 2443 0.953960 GAGTTGATCGGCCACGGTTT 60.954 55.000 2.24 0.00 41.39 3.27
2369 2444 1.375523 GAGTTGATCGGCCACGGTT 60.376 57.895 2.24 0.00 41.39 4.44
2370 2445 2.264794 GAGTTGATCGGCCACGGT 59.735 61.111 2.24 0.00 41.39 4.83
2371 2446 2.511600 GGAGTTGATCGGCCACGG 60.512 66.667 2.24 0.00 41.39 4.94
2372 2447 2.885644 CGGAGTTGATCGGCCACG 60.886 66.667 2.24 0.00 42.74 4.94
2373 2448 3.195698 GCGGAGTTGATCGGCCAC 61.196 66.667 2.24 0.00 45.84 5.01
2377 2452 2.202932 CCAGGCGGAGTTGATCGG 60.203 66.667 0.00 0.00 0.00 4.18
2378 2453 2.892640 TCCAGGCGGAGTTGATCG 59.107 61.111 0.00 0.00 35.91 3.69
2398 2473 2.373169 TCTTTGATTGACTGCCACTCCT 59.627 45.455 0.00 0.00 0.00 3.69
2408 2483 4.225267 TCCTTAGGGGTCTCTTTGATTGAC 59.775 45.833 0.00 0.00 36.25 3.18
2450 2529 0.965439 TTTCGCCCAAACTTCCATGG 59.035 50.000 4.97 4.97 36.42 3.66
2518 2597 0.409876 CCTCCTCCCGATCCATCCTA 59.590 60.000 0.00 0.00 0.00 2.94
2647 2726 5.426689 TCATGTTCTTGAGCCAGTAGAAT 57.573 39.130 0.00 0.00 31.25 2.40
2719 2798 5.886960 AGGTCTTTCTGCATGTTATTGAC 57.113 39.130 0.00 0.00 0.00 3.18
2809 2888 2.822701 GGAACGCCGAACCCATCC 60.823 66.667 0.00 0.00 0.00 3.51
2865 2946 7.814587 CACCATACATGACATAACGATCTACAT 59.185 37.037 0.00 0.00 0.00 2.29
2895 2976 0.520412 CTTACAAAATCCGGCGCACG 60.520 55.000 10.83 10.78 43.80 5.34
2958 3040 1.028905 TTTTGAGGGGAACGTTGCTG 58.971 50.000 19.59 0.00 0.00 4.41
3023 3105 9.332502 AGGCAAGGTTTTCGTAAAAATAAAAAT 57.667 25.926 0.00 0.00 36.77 1.82
3024 3106 8.719560 AGGCAAGGTTTTCGTAAAAATAAAAA 57.280 26.923 0.00 0.00 36.77 1.94
3025 3107 7.167801 CGAGGCAAGGTTTTCGTAAAAATAAAA 59.832 33.333 0.00 0.00 36.77 1.52
3026 3108 6.637658 CGAGGCAAGGTTTTCGTAAAAATAAA 59.362 34.615 0.00 0.00 36.77 1.40
3027 3109 6.144175 CGAGGCAAGGTTTTCGTAAAAATAA 58.856 36.000 0.00 0.00 36.77 1.40
3028 3110 5.691815 CGAGGCAAGGTTTTCGTAAAAATA 58.308 37.500 0.00 0.00 36.77 1.40
3029 3111 4.542735 CGAGGCAAGGTTTTCGTAAAAAT 58.457 39.130 0.00 0.00 36.77 1.82
3030 3112 3.792794 GCGAGGCAAGGTTTTCGTAAAAA 60.793 43.478 0.00 0.00 35.61 1.94
3031 3113 2.287129 GCGAGGCAAGGTTTTCGTAAAA 60.287 45.455 0.00 0.00 35.61 1.52
3032 3114 1.264826 GCGAGGCAAGGTTTTCGTAAA 59.735 47.619 0.00 0.00 35.61 2.01
3033 3115 0.869730 GCGAGGCAAGGTTTTCGTAA 59.130 50.000 0.00 0.00 35.61 3.18
3034 3116 0.249953 TGCGAGGCAAGGTTTTCGTA 60.250 50.000 0.00 0.00 34.76 3.43
3035 3117 1.098712 TTGCGAGGCAAGGTTTTCGT 61.099 50.000 0.00 0.00 43.99 3.85
3036 3118 1.652012 TTGCGAGGCAAGGTTTTCG 59.348 52.632 0.00 0.00 43.99 3.46
3045 3127 1.134753 CCTTAATGCAATTGCGAGGCA 59.865 47.619 24.58 7.91 45.83 4.75
3046 3128 1.405105 TCCTTAATGCAATTGCGAGGC 59.595 47.619 24.58 1.61 45.83 4.70
3047 3129 3.781079 TTCCTTAATGCAATTGCGAGG 57.219 42.857 24.58 24.55 45.83 4.63
3048 3130 3.549070 GCTTTCCTTAATGCAATTGCGAG 59.451 43.478 24.58 17.92 45.83 5.03
3049 3131 3.510719 GCTTTCCTTAATGCAATTGCGA 58.489 40.909 24.58 14.46 45.83 5.10
3050 3132 2.279659 CGCTTTCCTTAATGCAATTGCG 59.720 45.455 24.58 10.34 45.83 4.85
3051 3133 3.912708 CGCTTTCCTTAATGCAATTGC 57.087 42.857 23.69 23.69 36.99 3.56


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.