Multiple sequence alignment - TraesCS2B01G526000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G526000 chr2B 100.000 2534 0 0 1 2534 719979024 719981557 0.000000e+00 4680.0
1 TraesCS2B01G526000 chr2B 77.982 327 52 14 1 323 719970113 719970423 1.200000e-43 187.0
2 TraesCS2B01G526000 chr2A 88.503 1757 95 49 1 1707 728413214 728414913 0.000000e+00 2026.0
3 TraesCS2B01G526000 chr2A 85.593 354 36 7 2060 2406 728415812 728416157 8.620000e-95 357.0
4 TraesCS2B01G526000 chr2D 89.946 736 31 13 1001 1707 593517694 593518415 0.000000e+00 909.0
5 TraesCS2B01G526000 chr2D 85.353 553 38 15 470 986 593517096 593517641 1.330000e-147 532.0
6 TraesCS2B01G526000 chr2D 82.698 630 70 18 1800 2406 593518404 593519017 8.030000e-145 523.0
7 TraesCS2B01G526000 chr2D 86.127 173 12 4 39 211 593516408 593516568 2.590000e-40 176.0
8 TraesCS2B01G526000 chr2D 83.838 99 14 2 1707 1804 130803689 130803592 2.680000e-15 93.5
9 TraesCS2B01G526000 chrUn 82.569 109 12 7 1697 1802 93789218 93789322 3.470000e-14 89.8
10 TraesCS2B01G526000 chr5D 83.505 97 14 2 1707 1802 106809767 106809672 3.470000e-14 89.8
11 TraesCS2B01G526000 chr7A 82.105 95 15 2 1709 1802 12215328 12215235 2.090000e-11 80.5
12 TraesCS2B01G526000 chr3B 89.394 66 4 2 1708 1772 51163969 51164032 2.090000e-11 80.5
13 TraesCS2B01G526000 chr1B 94.444 36 2 0 2239 2274 142294162 142294127 3.520000e-04 56.5
14 TraesCS2B01G526000 chr6B 100.000 28 0 0 483 510 492211731 492211758 5.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G526000 chr2B 719979024 719981557 2533 False 4680.0 4680 100.000 1 2534 1 chr2B.!!$F2 2533
1 TraesCS2B01G526000 chr2A 728413214 728416157 2943 False 1191.5 2026 87.048 1 2406 2 chr2A.!!$F1 2405
2 TraesCS2B01G526000 chr2D 593516408 593519017 2609 False 535.0 909 86.031 39 2406 4 chr2D.!!$F1 2367

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
433 828 0.380378 TTGTTTTCTGCTGTGCCGTC 59.62 50.0 0.0 0.0 0.0 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2420 3626 0.037303 ATCAACAGACCCAGCCACTG 59.963 55.0 0.0 0.0 37.62 3.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 2.248280 TGTTTCTTCTTGCGGCTGTA 57.752 45.000 0.00 0.00 0.00 2.74
29 30 1.461127 CTTCTTGCGGCTGTAGTTGTC 59.539 52.381 0.00 0.00 0.00 3.18
43 44 6.720112 TGTAGTTGTCACCTTGTAAGTACT 57.280 37.500 0.00 0.00 32.72 2.73
54 55 5.247564 ACCTTGTAAGTACTGCTCCAATGTA 59.752 40.000 0.00 0.00 0.00 2.29
74 75 3.827752 GGAGCTCTCCCCTTTGGT 58.172 61.111 14.64 0.00 43.94 3.67
117 118 4.045771 TCGCCGTCGCTGCTGTTA 62.046 61.111 0.00 0.00 35.26 2.41
118 119 3.109547 CGCCGTCGCTGCTGTTAA 61.110 61.111 0.00 0.00 0.00 2.01
142 143 1.091537 TTGCCGCTGTTATTGTAGCC 58.908 50.000 0.00 0.00 36.60 3.93
152 153 6.868864 CGCTGTTATTGTAGCCTTATGACTAT 59.131 38.462 0.00 0.00 36.60 2.12
154 155 8.499162 GCTGTTATTGTAGCCTTATGACTATTG 58.501 37.037 0.00 0.00 33.89 1.90
218 603 2.276201 CGGCAGGAATTCGATACACAA 58.724 47.619 0.00 0.00 0.00 3.33
228 613 6.293735 GGAATTCGATACACAAACACCAAGAA 60.294 38.462 0.00 0.00 0.00 2.52
229 614 6.627395 ATTCGATACACAAACACCAAGAAA 57.373 33.333 0.00 0.00 0.00 2.52
230 615 6.438259 TTCGATACACAAACACCAAGAAAA 57.562 33.333 0.00 0.00 0.00 2.29
283 668 3.305539 CCACATGCTGTAATGTTTGCAGT 60.306 43.478 7.09 0.00 44.05 4.40
303 690 7.699566 TGCAGTACAAACGAGAATAAAAGTTT 58.300 30.769 0.00 0.00 37.29 2.66
315 702 2.959507 AAAAGTTTTCGTTGCAGGCT 57.040 40.000 0.00 0.00 0.00 4.58
331 726 1.370064 GCTACGGTGTTCCCTGTGT 59.630 57.895 0.00 0.00 0.00 3.72
332 727 0.949105 GCTACGGTGTTCCCTGTGTG 60.949 60.000 0.00 0.00 0.00 3.82
386 781 1.269448 TCTTCTGAATTTGCGGTTGCC 59.731 47.619 0.00 0.00 41.78 4.52
413 808 3.071479 GCCGTACCTCTTGAATTTGTGA 58.929 45.455 0.00 0.00 0.00 3.58
414 809 3.689649 GCCGTACCTCTTGAATTTGTGAT 59.310 43.478 0.00 0.00 0.00 3.06
415 810 4.156008 GCCGTACCTCTTGAATTTGTGATT 59.844 41.667 0.00 0.00 0.00 2.57
416 811 5.631026 CCGTACCTCTTGAATTTGTGATTG 58.369 41.667 0.00 0.00 0.00 2.67
417 812 5.181245 CCGTACCTCTTGAATTTGTGATTGT 59.819 40.000 0.00 0.00 0.00 2.71
418 813 6.293955 CCGTACCTCTTGAATTTGTGATTGTT 60.294 38.462 0.00 0.00 0.00 2.83
419 814 7.138736 CGTACCTCTTGAATTTGTGATTGTTT 58.861 34.615 0.00 0.00 0.00 2.83
420 815 7.647715 CGTACCTCTTGAATTTGTGATTGTTTT 59.352 33.333 0.00 0.00 0.00 2.43
421 816 8.968242 GTACCTCTTGAATTTGTGATTGTTTTC 58.032 33.333 0.00 0.00 0.00 2.29
422 817 7.785033 ACCTCTTGAATTTGTGATTGTTTTCT 58.215 30.769 0.00 0.00 0.00 2.52
433 828 0.380378 TTGTTTTCTGCTGTGCCGTC 59.620 50.000 0.00 0.00 0.00 4.79
453 848 4.867047 CGTCTGTGAAAGTCTAGAATGCAT 59.133 41.667 0.00 0.00 0.00 3.96
468 863 2.084610 TGCATCAGGACTTTCACTCG 57.915 50.000 0.00 0.00 0.00 4.18
469 864 1.338105 TGCATCAGGACTTTCACTCGG 60.338 52.381 0.00 0.00 0.00 4.63
473 868 1.613925 TCAGGACTTTCACTCGGTCTG 59.386 52.381 0.00 0.00 0.00 3.51
495 895 2.640826 TGGTCGGGGACTTTGTATTTCT 59.359 45.455 0.00 0.00 32.47 2.52
505 905 7.393515 GGGGACTTTGTATTTCTGTTATTCAGT 59.606 37.037 0.00 0.00 43.97 3.41
522 932 4.223556 TCAGTTAATAATGCCCGGTTCA 57.776 40.909 0.00 0.00 0.00 3.18
574 984 2.896801 GCACCAAGACCACTGTGCG 61.897 63.158 1.29 0.00 43.83 5.34
585 995 3.353836 CTGTGCGAACAACCCCGG 61.354 66.667 0.00 0.00 0.00 5.73
607 1017 1.658373 CGCACGCATGAAGTCATATGC 60.658 52.381 0.00 11.56 44.67 3.14
616 1026 5.277683 GCATGAAGTCATATGCACAGGTTAG 60.278 44.000 0.00 0.00 46.72 2.34
650 1060 1.643292 CAGCGACCACACACACAAG 59.357 57.895 0.00 0.00 0.00 3.16
651 1061 1.523711 AGCGACCACACACACAAGG 60.524 57.895 0.00 0.00 0.00 3.61
652 1062 2.542907 GCGACCACACACACAAGGG 61.543 63.158 0.00 0.00 0.00 3.95
654 1064 0.462937 CGACCACACACACAAGGGAA 60.463 55.000 0.00 0.00 0.00 3.97
656 1066 1.676006 GACCACACACACAAGGGAAAG 59.324 52.381 0.00 0.00 0.00 2.62
657 1067 1.032014 CCACACACACAAGGGAAAGG 58.968 55.000 0.00 0.00 0.00 3.11
676 1103 2.627699 AGGATGTTTGCCACGACAAAAT 59.372 40.909 0.00 0.00 40.99 1.82
714 1141 1.129624 TGTGTGCGACATAAAATCGGC 59.870 47.619 0.00 0.00 39.99 5.54
978 1428 2.452064 GGAGGCCGGGATCCATTCA 61.452 63.158 15.23 0.00 35.54 2.57
995 1445 1.154016 CAATCGACCACGCGAGAGT 60.154 57.895 15.93 6.63 44.26 3.24
1559 2074 3.482833 GCTAGTTAATCGTCTCTTCGTGC 59.517 47.826 0.00 0.00 0.00 5.34
1563 2078 1.927895 AATCGTCTCTTCGTGCCATC 58.072 50.000 0.00 0.00 0.00 3.51
1569 2084 2.789893 GTCTCTTCGTGCCATCGTTATC 59.210 50.000 0.00 0.00 0.00 1.75
1574 2089 3.452755 TCGTGCCATCGTTATCTGAAT 57.547 42.857 0.00 0.00 0.00 2.57
1582 2098 5.568296 GCCATCGTTATCTGAATCGTAGTAC 59.432 44.000 0.00 0.00 0.00 2.73
1646 2167 0.385751 TACCTCTGCGCACTAGCATC 59.614 55.000 5.66 0.00 46.97 3.91
1651 2172 3.264897 GCGCACTAGCATCCCACG 61.265 66.667 0.30 0.00 42.27 4.94
1760 2281 9.890629 TTACAGATATATCAATTACATCCAGCC 57.109 33.333 15.08 0.00 0.00 4.85
1761 2282 8.155620 ACAGATATATCAATTACATCCAGCCT 57.844 34.615 15.08 0.00 0.00 4.58
1762 2283 8.263640 ACAGATATATCAATTACATCCAGCCTC 58.736 37.037 15.08 0.00 0.00 4.70
1763 2284 8.484575 CAGATATATCAATTACATCCAGCCTCT 58.515 37.037 15.08 0.00 0.00 3.69
1764 2285 8.484575 AGATATATCAATTACATCCAGCCTCTG 58.515 37.037 15.08 0.00 0.00 3.35
1765 2286 2.923121 TCAATTACATCCAGCCTCTGC 58.077 47.619 0.00 0.00 37.95 4.26
1766 2287 2.239402 TCAATTACATCCAGCCTCTGCA 59.761 45.455 0.00 0.00 41.13 4.41
1767 2288 3.018856 CAATTACATCCAGCCTCTGCAA 58.981 45.455 0.00 0.00 41.13 4.08
1768 2289 2.113860 TTACATCCAGCCTCTGCAAC 57.886 50.000 0.00 0.00 41.13 4.17
1769 2290 0.983467 TACATCCAGCCTCTGCAACA 59.017 50.000 0.00 0.00 41.13 3.33
1770 2291 0.111061 ACATCCAGCCTCTGCAACAA 59.889 50.000 0.00 0.00 41.13 2.83
1771 2292 0.524862 CATCCAGCCTCTGCAACAAC 59.475 55.000 0.00 0.00 41.13 3.32
1772 2293 0.957395 ATCCAGCCTCTGCAACAACG 60.957 55.000 0.00 0.00 41.13 4.10
1773 2294 2.253452 CAGCCTCTGCAACAACGC 59.747 61.111 0.00 0.00 41.13 4.84
1774 2295 2.203195 AGCCTCTGCAACAACGCA 60.203 55.556 0.00 0.00 41.13 5.24
1775 2296 1.823470 AGCCTCTGCAACAACGCAA 60.823 52.632 0.00 0.00 42.45 4.85
1776 2297 1.174712 AGCCTCTGCAACAACGCAAT 61.175 50.000 0.00 0.00 42.45 3.56
1777 2298 0.521291 GCCTCTGCAACAACGCAATA 59.479 50.000 0.00 0.00 42.45 1.90
1778 2299 1.729149 GCCTCTGCAACAACGCAATAC 60.729 52.381 0.00 0.00 42.45 1.89
1779 2300 1.535028 CCTCTGCAACAACGCAATACA 59.465 47.619 0.00 0.00 42.45 2.29
1780 2301 2.574322 CTCTGCAACAACGCAATACAC 58.426 47.619 0.00 0.00 42.45 2.90
1781 2302 1.943340 TCTGCAACAACGCAATACACA 59.057 42.857 0.00 0.00 42.45 3.72
1782 2303 2.356069 TCTGCAACAACGCAATACACAA 59.644 40.909 0.00 0.00 42.45 3.33
1783 2304 3.111838 CTGCAACAACGCAATACACAAA 58.888 40.909 0.00 0.00 42.45 2.83
1784 2305 3.711086 TGCAACAACGCAATACACAAAT 58.289 36.364 0.00 0.00 39.45 2.32
1785 2306 3.488678 TGCAACAACGCAATACACAAATG 59.511 39.130 0.00 0.00 39.45 2.32
1786 2307 3.733224 GCAACAACGCAATACACAAATGA 59.267 39.130 0.00 0.00 0.00 2.57
1787 2308 4.374906 GCAACAACGCAATACACAAATGAC 60.375 41.667 0.00 0.00 0.00 3.06
1788 2309 4.560136 ACAACGCAATACACAAATGACA 57.440 36.364 0.00 0.00 0.00 3.58
1789 2310 4.286910 ACAACGCAATACACAAATGACAC 58.713 39.130 0.00 0.00 0.00 3.67
1790 2311 4.036262 ACAACGCAATACACAAATGACACT 59.964 37.500 0.00 0.00 0.00 3.55
1791 2312 5.237561 ACAACGCAATACACAAATGACACTA 59.762 36.000 0.00 0.00 0.00 2.74
1792 2313 5.277601 ACGCAATACACAAATGACACTAC 57.722 39.130 0.00 0.00 0.00 2.73
1793 2314 4.143200 ACGCAATACACAAATGACACTACG 60.143 41.667 0.00 0.00 0.00 3.51
1794 2315 4.647964 GCAATACACAAATGACACTACGG 58.352 43.478 0.00 0.00 0.00 4.02
1795 2316 4.390603 GCAATACACAAATGACACTACGGA 59.609 41.667 0.00 0.00 0.00 4.69
1796 2317 5.064707 GCAATACACAAATGACACTACGGAT 59.935 40.000 0.00 0.00 0.00 4.18
1797 2318 6.477742 CAATACACAAATGACACTACGGATG 58.522 40.000 0.00 0.00 0.00 3.51
1798 2319 2.742053 ACACAAATGACACTACGGATGC 59.258 45.455 0.00 0.00 0.00 3.91
1799 2320 2.741517 CACAAATGACACTACGGATGCA 59.258 45.455 0.00 0.00 0.00 3.96
1800 2321 2.742053 ACAAATGACACTACGGATGCAC 59.258 45.455 0.00 0.00 0.00 4.57
1801 2322 2.741517 CAAATGACACTACGGATGCACA 59.258 45.455 0.00 0.00 0.00 4.57
1802 2323 2.988010 ATGACACTACGGATGCACAT 57.012 45.000 0.00 0.00 0.00 3.21
1803 2324 4.400529 AATGACACTACGGATGCACATA 57.599 40.909 0.00 0.00 0.00 2.29
1804 2325 3.878160 TGACACTACGGATGCACATAA 57.122 42.857 0.00 0.00 0.00 1.90
1805 2326 4.400529 TGACACTACGGATGCACATAAT 57.599 40.909 0.00 0.00 0.00 1.28
1806 2327 5.523438 TGACACTACGGATGCACATAATA 57.477 39.130 0.00 0.00 0.00 0.98
1807 2328 6.096673 TGACACTACGGATGCACATAATAT 57.903 37.500 0.00 0.00 0.00 1.28
1808 2329 6.521162 TGACACTACGGATGCACATAATATT 58.479 36.000 0.00 0.00 0.00 1.28
1809 2330 7.662897 TGACACTACGGATGCACATAATATTA 58.337 34.615 0.00 0.00 0.00 0.98
1810 2331 8.311109 TGACACTACGGATGCACATAATATTAT 58.689 33.333 1.91 1.91 0.00 1.28
1811 2332 8.479313 ACACTACGGATGCACATAATATTATG 57.521 34.615 26.83 26.83 44.66 1.90
1812 2333 7.549134 ACACTACGGATGCACATAATATTATGG 59.451 37.037 30.00 21.93 43.69 2.74
1816 2337 8.402798 ACGGATGCACATAATATTATGGAAAA 57.597 30.769 30.00 17.50 43.69 2.29
1836 2358 2.094675 AGCTTCAAATCAATGGACGGG 58.905 47.619 0.00 0.00 0.00 5.28
1849 2371 0.526211 GGACGGGTCCTTGATTTTGC 59.474 55.000 10.60 0.00 46.16 3.68
1853 2375 0.168128 GGGTCCTTGATTTTGCGTCG 59.832 55.000 0.00 0.00 0.00 5.12
1868 2390 2.987547 TCGACCGCTTCCTCCGTT 60.988 61.111 0.00 0.00 0.00 4.44
1883 2551 4.025401 GTTTGCCACGCGTCCCTG 62.025 66.667 9.86 0.00 0.00 4.45
1884 2552 4.555709 TTTGCCACGCGTCCCTGT 62.556 61.111 9.86 0.00 0.00 4.00
1896 2564 2.768046 TCCCTGTGGACCCAACTAC 58.232 57.895 0.00 0.00 35.03 2.73
1897 2565 0.838987 TCCCTGTGGACCCAACTACC 60.839 60.000 0.00 0.00 35.03 3.18
1901 2569 0.104882 TGTGGACCCAACTACCTCCA 60.105 55.000 0.00 0.00 0.00 3.86
1911 2582 5.045797 ACCCAACTACCTCCATTTCTTCTAC 60.046 44.000 0.00 0.00 0.00 2.59
1932 2603 1.806461 TATCTCCTCATGCGACGGCC 61.806 60.000 0.00 0.00 38.85 6.13
1951 2623 1.812571 CCGCAGCCACAAAGTATTCTT 59.187 47.619 0.00 0.00 35.14 2.52
1954 2626 2.164422 GCAGCCACAAAGTATTCTTCCC 59.836 50.000 0.00 0.00 32.90 3.97
1982 2663 2.285442 GCCCTCTACCCACACCCT 60.285 66.667 0.00 0.00 0.00 4.34
2001 2692 2.423446 GCTCACTGCCCTATCCGG 59.577 66.667 0.00 0.00 35.15 5.14
2058 2913 1.963855 CATCGCAACCCCGTCACAA 60.964 57.895 0.00 0.00 0.00 3.33
2134 3331 1.227147 CCGACAACGTGTGACCAGT 60.227 57.895 0.00 0.00 37.88 4.00
2145 3342 2.426023 GACCAGTCACCGCAACCT 59.574 61.111 0.00 0.00 0.00 3.50
2160 3357 2.673043 GCAACCTGCATTTCTCCATGTG 60.673 50.000 0.00 0.00 44.26 3.21
2162 3359 2.880443 ACCTGCATTTCTCCATGTGTT 58.120 42.857 0.00 0.00 0.00 3.32
2167 3364 4.080687 TGCATTTCTCCATGTGTTCATCA 58.919 39.130 0.00 0.00 31.15 3.07
2177 3374 1.980765 TGTGTTCATCAGCTTCTCCCT 59.019 47.619 0.00 0.00 0.00 4.20
2201 3398 1.539065 CGACTCCTTCCCATGGATTCG 60.539 57.143 15.22 4.47 45.37 3.34
2220 3417 2.112928 ACATGGAGCGTGCAACCA 59.887 55.556 11.80 11.80 38.09 3.67
2230 3427 1.604593 GTGCAACCACATCCTGCCT 60.605 57.895 0.00 0.00 41.67 4.75
2274 3478 3.064820 GTCCATGTTGCAATAGGTAACCG 59.935 47.826 0.59 0.00 40.91 4.44
2278 3482 3.085533 TGTTGCAATAGGTAACCGCAAT 58.914 40.909 0.59 0.00 43.74 3.56
2307 3511 5.849510 CCATGTTGCAATATGGATGTTCAT 58.150 37.500 38.29 15.82 46.95 2.57
2321 3525 1.632920 TGTTCATAGGCCCATGTCACA 59.367 47.619 11.14 11.93 0.00 3.58
2333 3537 2.424601 CCATGTCACACAATGGATGACC 59.575 50.000 14.00 0.00 41.71 4.02
2406 3612 0.324645 GGGTGATCAAAGGCCCATGT 60.325 55.000 13.07 0.00 40.76 3.21
2407 3613 0.819582 GGTGATCAAAGGCCCATGTG 59.180 55.000 0.00 0.00 0.00 3.21
2408 3614 1.616725 GGTGATCAAAGGCCCATGTGA 60.617 52.381 0.00 0.00 0.00 3.58
2409 3615 1.474077 GTGATCAAAGGCCCATGTGAC 59.526 52.381 0.00 0.00 0.00 3.67
2410 3616 0.734889 GATCAAAGGCCCATGTGACG 59.265 55.000 0.00 0.00 0.00 4.35
2411 3617 1.315257 ATCAAAGGCCCATGTGACGC 61.315 55.000 0.00 0.00 0.00 5.19
2412 3618 3.055719 AAAGGCCCATGTGACGCG 61.056 61.111 3.53 3.53 0.00 6.01
2413 3619 3.545124 AAAGGCCCATGTGACGCGA 62.545 57.895 15.93 0.00 0.00 5.87
2414 3620 3.958147 AAGGCCCATGTGACGCGAG 62.958 63.158 15.93 0.00 0.00 5.03
2417 3623 3.490759 CCCATGTGACGCGAGCAC 61.491 66.667 23.07 23.07 38.19 4.40
2418 3624 2.738139 CCATGTGACGCGAGCACA 60.738 61.111 30.17 30.17 46.39 4.57
2419 3625 2.316867 CCATGTGACGCGAGCACAA 61.317 57.895 31.10 20.02 45.83 3.33
2420 3626 1.154599 CATGTGACGCGAGCACAAC 60.155 57.895 31.10 14.26 45.83 3.32
2421 3627 1.594021 ATGTGACGCGAGCACAACA 60.594 52.632 31.10 18.29 45.83 3.33
2422 3628 1.560004 ATGTGACGCGAGCACAACAG 61.560 55.000 31.10 0.00 45.83 3.16
2423 3629 2.106131 TGACGCGAGCACAACAGT 59.894 55.556 15.93 0.00 0.00 3.55
2424 3630 2.237066 TGACGCGAGCACAACAGTG 61.237 57.895 15.93 0.00 36.35 3.66
2425 3631 2.943345 GACGCGAGCACAACAGTGG 61.943 63.158 15.93 0.00 33.85 4.00
2426 3632 4.374702 CGCGAGCACAACAGTGGC 62.375 66.667 0.00 0.00 33.85 5.01
2427 3633 2.974698 GCGAGCACAACAGTGGCT 60.975 61.111 0.00 0.00 33.85 4.75
2428 3634 2.941333 CGAGCACAACAGTGGCTG 59.059 61.111 0.00 0.00 37.52 4.85
2429 3635 2.610694 CGAGCACAACAGTGGCTGG 61.611 63.158 0.00 0.00 35.51 4.85
2430 3636 2.203394 AGCACAACAGTGGCTGGG 60.203 61.111 0.00 0.00 35.51 4.45
2431 3637 2.519302 GCACAACAGTGGCTGGGT 60.519 61.111 0.00 0.00 35.51 4.51
2432 3638 2.555547 GCACAACAGTGGCTGGGTC 61.556 63.158 0.00 0.00 35.51 4.46
2433 3639 1.149174 CACAACAGTGGCTGGGTCT 59.851 57.895 0.00 0.00 35.51 3.85
2434 3640 1.149174 ACAACAGTGGCTGGGTCTG 59.851 57.895 0.00 0.00 35.51 3.51
2435 3641 1.149174 CAACAGTGGCTGGGTCTGT 59.851 57.895 0.00 0.00 43.04 3.41
2436 3642 1.922821 AACAGTGGCTGGGTCTGTT 59.077 52.632 4.31 4.31 44.24 3.16
2437 3643 0.466189 AACAGTGGCTGGGTCTGTTG 60.466 55.000 8.62 0.00 46.23 3.33
2438 3644 1.344953 ACAGTGGCTGGGTCTGTTGA 61.345 55.000 0.00 0.00 39.00 3.18
2439 3645 0.037303 CAGTGGCTGGGTCTGTTGAT 59.963 55.000 0.00 0.00 0.00 2.57
2440 3646 0.037303 AGTGGCTGGGTCTGTTGATG 59.963 55.000 0.00 0.00 0.00 3.07
2441 3647 1.303561 TGGCTGGGTCTGTTGATGC 60.304 57.895 0.00 0.00 0.00 3.91
2442 3648 2.401766 GGCTGGGTCTGTTGATGCG 61.402 63.158 0.00 0.00 0.00 4.73
2443 3649 1.375908 GCTGGGTCTGTTGATGCGA 60.376 57.895 0.00 0.00 0.00 5.10
2444 3650 1.639298 GCTGGGTCTGTTGATGCGAC 61.639 60.000 0.00 0.00 0.00 5.19
2445 3651 1.354337 CTGGGTCTGTTGATGCGACG 61.354 60.000 0.00 0.00 0.00 5.12
2446 3652 1.080093 GGGTCTGTTGATGCGACGA 60.080 57.895 0.00 0.00 0.00 4.20
2447 3653 0.669318 GGGTCTGTTGATGCGACGAA 60.669 55.000 0.00 0.00 0.00 3.85
2448 3654 0.716108 GGTCTGTTGATGCGACGAAG 59.284 55.000 0.00 0.00 0.00 3.79
2449 3655 0.716108 GTCTGTTGATGCGACGAAGG 59.284 55.000 0.00 0.00 0.00 3.46
2450 3656 0.317160 TCTGTTGATGCGACGAAGGT 59.683 50.000 0.00 0.00 0.00 3.50
2451 3657 1.148310 CTGTTGATGCGACGAAGGTT 58.852 50.000 0.00 0.00 0.00 3.50
2452 3658 0.865111 TGTTGATGCGACGAAGGTTG 59.135 50.000 0.00 0.00 0.00 3.77
2453 3659 1.144969 GTTGATGCGACGAAGGTTGA 58.855 50.000 0.00 0.00 0.00 3.18
2454 3660 1.136336 GTTGATGCGACGAAGGTTGAC 60.136 52.381 0.00 0.00 0.00 3.18
2455 3661 0.032815 TGATGCGACGAAGGTTGACA 59.967 50.000 0.00 0.00 0.00 3.58
2456 3662 1.337728 TGATGCGACGAAGGTTGACAT 60.338 47.619 0.00 0.00 31.35 3.06
2457 3663 2.094442 TGATGCGACGAAGGTTGACATA 60.094 45.455 0.00 0.00 29.88 2.29
2458 3664 1.705256 TGCGACGAAGGTTGACATAC 58.295 50.000 0.00 0.00 0.00 2.39
2459 3665 0.997196 GCGACGAAGGTTGACATACC 59.003 55.000 0.00 0.00 38.53 2.73
2467 3673 3.719268 AGGTTGACATACCTTGCATCA 57.281 42.857 0.00 0.00 46.39 3.07
2468 3674 3.347216 AGGTTGACATACCTTGCATCAC 58.653 45.455 0.00 0.00 46.39 3.06
2469 3675 2.423538 GGTTGACATACCTTGCATCACC 59.576 50.000 0.00 0.00 35.23 4.02
2470 3676 3.081061 GTTGACATACCTTGCATCACCA 58.919 45.455 0.00 0.00 0.00 4.17
2471 3677 3.431673 TGACATACCTTGCATCACCAA 57.568 42.857 0.00 0.00 0.00 3.67
2472 3678 3.966979 TGACATACCTTGCATCACCAAT 58.033 40.909 0.00 0.00 0.00 3.16
2473 3679 3.947196 TGACATACCTTGCATCACCAATC 59.053 43.478 0.00 0.00 0.00 2.67
2474 3680 4.202441 GACATACCTTGCATCACCAATCT 58.798 43.478 0.00 0.00 0.00 2.40
2475 3681 4.202441 ACATACCTTGCATCACCAATCTC 58.798 43.478 0.00 0.00 0.00 2.75
2476 3682 2.885135 ACCTTGCATCACCAATCTCA 57.115 45.000 0.00 0.00 0.00 3.27
2477 3683 3.159213 ACCTTGCATCACCAATCTCAA 57.841 42.857 0.00 0.00 0.00 3.02
2478 3684 3.087031 ACCTTGCATCACCAATCTCAAG 58.913 45.455 0.00 0.00 0.00 3.02
2479 3685 2.426024 CCTTGCATCACCAATCTCAAGG 59.574 50.000 4.68 4.68 42.82 3.61
2480 3686 3.349927 CTTGCATCACCAATCTCAAGGA 58.650 45.455 0.00 0.00 0.00 3.36
2481 3687 2.995283 TGCATCACCAATCTCAAGGAG 58.005 47.619 0.00 0.00 0.00 3.69
2482 3688 2.295885 GCATCACCAATCTCAAGGAGG 58.704 52.381 0.00 0.00 0.00 4.30
2483 3689 2.092753 GCATCACCAATCTCAAGGAGGA 60.093 50.000 0.00 0.00 0.00 3.71
2484 3690 3.806380 CATCACCAATCTCAAGGAGGAG 58.194 50.000 0.00 0.00 36.21 3.69
2485 3691 2.907892 TCACCAATCTCAAGGAGGAGT 58.092 47.619 0.00 0.00 36.30 3.85
2486 3692 3.251484 TCACCAATCTCAAGGAGGAGTT 58.749 45.455 0.00 0.00 36.30 3.01
2487 3693 3.652869 TCACCAATCTCAAGGAGGAGTTT 59.347 43.478 0.00 0.00 36.30 2.66
2488 3694 4.844085 TCACCAATCTCAAGGAGGAGTTTA 59.156 41.667 0.00 0.00 36.30 2.01
2489 3695 5.488919 TCACCAATCTCAAGGAGGAGTTTAT 59.511 40.000 0.00 0.00 36.30 1.40
2490 3696 5.819901 CACCAATCTCAAGGAGGAGTTTATC 59.180 44.000 0.00 0.00 36.30 1.75
2491 3697 5.488919 ACCAATCTCAAGGAGGAGTTTATCA 59.511 40.000 0.00 0.00 36.30 2.15
2492 3698 6.012508 ACCAATCTCAAGGAGGAGTTTATCAA 60.013 38.462 0.00 0.00 36.30 2.57
2493 3699 7.059156 CCAATCTCAAGGAGGAGTTTATCAAT 58.941 38.462 0.00 0.00 36.30 2.57
2494 3700 8.213679 CCAATCTCAAGGAGGAGTTTATCAATA 58.786 37.037 0.00 0.00 36.30 1.90
2495 3701 9.270640 CAATCTCAAGGAGGAGTTTATCAATAG 57.729 37.037 0.00 0.00 36.30 1.73
2496 3702 7.366847 TCTCAAGGAGGAGTTTATCAATAGG 57.633 40.000 0.00 0.00 36.30 2.57
2497 3703 6.327626 TCTCAAGGAGGAGTTTATCAATAGGG 59.672 42.308 0.00 0.00 36.30 3.53
2498 3704 5.970640 TCAAGGAGGAGTTTATCAATAGGGT 59.029 40.000 0.00 0.00 0.00 4.34
2499 3705 6.447084 TCAAGGAGGAGTTTATCAATAGGGTT 59.553 38.462 0.00 0.00 0.00 4.11
2500 3706 7.626084 TCAAGGAGGAGTTTATCAATAGGGTTA 59.374 37.037 0.00 0.00 0.00 2.85
2501 3707 7.376335 AGGAGGAGTTTATCAATAGGGTTAC 57.624 40.000 0.00 0.00 0.00 2.50
2502 3708 7.140304 AGGAGGAGTTTATCAATAGGGTTACT 58.860 38.462 0.00 0.00 0.00 2.24
2503 3709 7.628101 AGGAGGAGTTTATCAATAGGGTTACTT 59.372 37.037 0.00 0.00 0.00 2.24
2504 3710 7.715686 GGAGGAGTTTATCAATAGGGTTACTTG 59.284 40.741 0.00 0.00 0.00 3.16
2505 3711 8.159229 AGGAGTTTATCAATAGGGTTACTTGT 57.841 34.615 0.00 0.00 0.00 3.16
2506 3712 8.047310 AGGAGTTTATCAATAGGGTTACTTGTG 58.953 37.037 0.00 0.00 0.00 3.33
2507 3713 7.827729 GGAGTTTATCAATAGGGTTACTTGTGT 59.172 37.037 0.00 0.00 0.00 3.72
2508 3714 8.561738 AGTTTATCAATAGGGTTACTTGTGTG 57.438 34.615 0.00 0.00 0.00 3.82
2509 3715 7.610305 AGTTTATCAATAGGGTTACTTGTGTGG 59.390 37.037 0.00 0.00 0.00 4.17
2510 3716 4.986054 TCAATAGGGTTACTTGTGTGGT 57.014 40.909 0.00 0.00 0.00 4.16
2511 3717 4.901868 TCAATAGGGTTACTTGTGTGGTC 58.098 43.478 0.00 0.00 0.00 4.02
2512 3718 4.595781 TCAATAGGGTTACTTGTGTGGTCT 59.404 41.667 0.00 0.00 0.00 3.85
2513 3719 5.781306 TCAATAGGGTTACTTGTGTGGTCTA 59.219 40.000 0.00 0.00 0.00 2.59
2514 3720 5.672421 ATAGGGTTACTTGTGTGGTCTAC 57.328 43.478 0.00 0.00 0.00 2.59
2515 3721 3.584294 AGGGTTACTTGTGTGGTCTACT 58.416 45.455 0.00 0.00 0.00 2.57
2516 3722 3.971971 AGGGTTACTTGTGTGGTCTACTT 59.028 43.478 0.00 0.00 0.00 2.24
2517 3723 4.062991 GGGTTACTTGTGTGGTCTACTTG 58.937 47.826 0.00 0.00 0.00 3.16
2518 3724 4.062991 GGTTACTTGTGTGGTCTACTTGG 58.937 47.826 0.00 0.00 0.00 3.61
2519 3725 2.930826 ACTTGTGTGGTCTACTTGGG 57.069 50.000 0.00 0.00 0.00 4.12
2520 3726 2.404559 ACTTGTGTGGTCTACTTGGGA 58.595 47.619 0.00 0.00 0.00 4.37
2521 3727 2.104281 ACTTGTGTGGTCTACTTGGGAC 59.896 50.000 0.00 0.00 0.00 4.46
2525 3731 3.737122 GGTCTACTTGGGACCCCC 58.263 66.667 8.45 0.00 45.31 5.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 1.388547 ACAGCCGCAAGAAGAAACAA 58.611 45.000 0.00 0.00 43.02 2.83
23 24 4.101119 AGCAGTACTTACAAGGTGACAACT 59.899 41.667 0.00 0.00 0.00 3.16
29 30 3.678056 TGGAGCAGTACTTACAAGGTG 57.322 47.619 0.00 0.00 0.00 4.00
104 105 2.594529 ACAAATTAACAGCAGCGACG 57.405 45.000 0.00 0.00 0.00 5.12
105 106 2.405025 GCAACAAATTAACAGCAGCGAC 59.595 45.455 0.00 0.00 0.00 5.19
106 107 2.606795 GGCAACAAATTAACAGCAGCGA 60.607 45.455 0.00 0.00 0.00 4.93
108 109 1.720852 CGGCAACAAATTAACAGCAGC 59.279 47.619 0.00 0.00 0.00 5.25
109 110 1.720852 GCGGCAACAAATTAACAGCAG 59.279 47.619 0.00 0.00 0.00 4.24
110 111 1.339610 AGCGGCAACAAATTAACAGCA 59.660 42.857 1.45 0.00 0.00 4.41
111 112 1.720852 CAGCGGCAACAAATTAACAGC 59.279 47.619 1.45 0.00 0.00 4.40
112 113 3.011949 ACAGCGGCAACAAATTAACAG 57.988 42.857 1.45 0.00 0.00 3.16
113 114 3.444703 AACAGCGGCAACAAATTAACA 57.555 38.095 1.45 0.00 0.00 2.41
114 115 5.404066 ACAATAACAGCGGCAACAAATTAAC 59.596 36.000 1.45 0.00 0.00 2.01
115 116 5.533482 ACAATAACAGCGGCAACAAATTAA 58.467 33.333 1.45 0.00 0.00 1.40
116 117 5.127693 ACAATAACAGCGGCAACAAATTA 57.872 34.783 1.45 0.00 0.00 1.40
117 118 3.988819 ACAATAACAGCGGCAACAAATT 58.011 36.364 1.45 0.00 0.00 1.82
118 119 3.658757 ACAATAACAGCGGCAACAAAT 57.341 38.095 1.45 0.00 0.00 2.32
142 143 7.766278 GGTATACATCCCTGCAATAGTCATAAG 59.234 40.741 5.01 0.00 0.00 1.73
152 153 2.631062 CGGTAGGTATACATCCCTGCAA 59.369 50.000 5.01 0.00 35.39 4.08
154 155 1.549170 CCGGTAGGTATACATCCCTGC 59.451 57.143 5.01 0.00 33.21 4.85
194 195 3.673809 GTGTATCGAATTCCTGCCGTATC 59.326 47.826 0.00 0.00 0.00 2.24
218 603 6.006449 AGTCTGCTGATATTTTCTTGGTGTT 58.994 36.000 0.00 0.00 0.00 3.32
228 613 7.413438 CGCTGTAAGAAAAGTCTGCTGATATTT 60.413 37.037 0.00 1.70 34.07 1.40
229 614 6.036517 CGCTGTAAGAAAAGTCTGCTGATATT 59.963 38.462 0.00 0.00 34.07 1.28
230 615 5.521735 CGCTGTAAGAAAAGTCTGCTGATAT 59.478 40.000 0.00 0.00 34.07 1.63
283 668 9.212687 CAACGAAAACTTTTATTCTCGTTTGTA 57.787 29.630 8.46 0.00 44.49 2.41
287 672 6.259638 TGCAACGAAAACTTTTATTCTCGTT 58.740 32.000 6.22 6.22 46.91 3.85
292 677 4.982295 AGCCTGCAACGAAAACTTTTATTC 59.018 37.500 0.00 0.00 0.00 1.75
295 680 4.553156 CGTAGCCTGCAACGAAAACTTTTA 60.553 41.667 2.49 0.00 41.55 1.52
296 681 2.959507 AGCCTGCAACGAAAACTTTT 57.040 40.000 0.00 0.00 0.00 2.27
303 690 1.666553 CACCGTAGCCTGCAACGAA 60.667 57.895 10.13 0.00 41.55 3.85
315 702 0.105224 CACACACAGGGAACACCGTA 59.895 55.000 0.00 0.00 46.96 4.02
331 726 0.244721 CATCAGACCGTCAGAGCACA 59.755 55.000 0.40 0.00 0.00 4.57
332 727 0.459237 CCATCAGACCGTCAGAGCAC 60.459 60.000 0.40 0.00 0.00 4.40
392 787 3.071479 TCACAAATTCAAGAGGTACGGC 58.929 45.455 0.00 0.00 0.00 5.68
413 808 1.001378 GACGGCACAGCAGAAAACAAT 60.001 47.619 0.00 0.00 0.00 2.71
414 809 0.380378 GACGGCACAGCAGAAAACAA 59.620 50.000 0.00 0.00 0.00 2.83
415 810 0.463654 AGACGGCACAGCAGAAAACA 60.464 50.000 0.00 0.00 0.00 2.83
416 811 0.040958 CAGACGGCACAGCAGAAAAC 60.041 55.000 0.00 0.00 0.00 2.43
417 812 0.463654 ACAGACGGCACAGCAGAAAA 60.464 50.000 0.00 0.00 0.00 2.29
418 813 1.146041 ACAGACGGCACAGCAGAAA 59.854 52.632 0.00 0.00 0.00 2.52
419 814 1.595109 CACAGACGGCACAGCAGAA 60.595 57.895 0.00 0.00 0.00 3.02
420 815 2.026945 TTCACAGACGGCACAGCAGA 62.027 55.000 0.00 0.00 0.00 4.26
421 816 1.159713 TTTCACAGACGGCACAGCAG 61.160 55.000 0.00 0.00 0.00 4.24
422 817 1.153269 TTTCACAGACGGCACAGCA 60.153 52.632 0.00 0.00 0.00 4.41
433 828 5.293814 CCTGATGCATTCTAGACTTTCACAG 59.706 44.000 0.00 0.00 0.00 3.66
453 848 1.613925 CAGACCGAGTGAAAGTCCTGA 59.386 52.381 0.00 0.00 30.63 3.86
468 863 1.765597 AAAGTCCCCGACCACAGACC 61.766 60.000 0.00 0.00 32.18 3.85
469 864 0.602905 CAAAGTCCCCGACCACAGAC 60.603 60.000 0.00 0.00 32.18 3.51
473 868 2.484742 AATACAAAGTCCCCGACCAC 57.515 50.000 0.00 0.00 32.18 4.16
495 895 6.123651 ACCGGGCATTATTAACTGAATAACA 58.876 36.000 6.32 0.00 41.69 2.41
528 938 4.253685 TCCTGCATTCTAGTTTCTTTCCG 58.746 43.478 0.00 0.00 0.00 4.30
529 939 5.249420 ACTCCTGCATTCTAGTTTCTTTCC 58.751 41.667 0.00 0.00 0.00 3.13
534 944 4.094146 GCTCAACTCCTGCATTCTAGTTTC 59.906 45.833 0.00 0.00 29.93 2.78
537 947 2.568956 TGCTCAACTCCTGCATTCTAGT 59.431 45.455 0.00 0.00 0.00 2.57
538 948 2.935201 GTGCTCAACTCCTGCATTCTAG 59.065 50.000 0.00 0.00 39.00 2.43
539 949 2.355108 GGTGCTCAACTCCTGCATTCTA 60.355 50.000 0.00 0.00 39.00 2.10
540 950 1.612726 GGTGCTCAACTCCTGCATTCT 60.613 52.381 0.00 0.00 39.00 2.40
541 951 0.807496 GGTGCTCAACTCCTGCATTC 59.193 55.000 0.00 0.00 39.00 2.67
542 952 0.111061 TGGTGCTCAACTCCTGCATT 59.889 50.000 0.00 0.00 39.00 3.56
543 953 0.111061 TTGGTGCTCAACTCCTGCAT 59.889 50.000 0.00 0.00 39.00 3.96
544 954 0.535780 CTTGGTGCTCAACTCCTGCA 60.536 55.000 0.00 0.00 32.83 4.41
545 955 0.250467 TCTTGGTGCTCAACTCCTGC 60.250 55.000 0.00 0.00 32.83 4.85
585 995 1.428370 TATGACTTCATGCGTGCGGC 61.428 55.000 0.00 0.00 43.96 6.53
586 996 1.070376 CATATGACTTCATGCGTGCGG 60.070 52.381 0.00 0.00 37.15 5.69
587 997 1.658373 GCATATGACTTCATGCGTGCG 60.658 52.381 6.97 0.00 38.31 5.34
588 998 2.028287 GCATATGACTTCATGCGTGC 57.972 50.000 6.97 6.24 38.31 5.34
607 1017 3.139077 GTTGGAACCACTCTAACCTGTG 58.861 50.000 0.00 0.00 39.09 3.66
616 1026 1.172812 GCTGGGTGTTGGAACCACTC 61.173 60.000 0.00 0.00 42.47 3.51
650 1060 0.243636 CGTGGCAAACATCCTTTCCC 59.756 55.000 0.00 0.00 0.00 3.97
651 1061 1.068541 GTCGTGGCAAACATCCTTTCC 60.069 52.381 0.00 0.00 0.00 3.13
652 1062 1.606668 TGTCGTGGCAAACATCCTTTC 59.393 47.619 0.00 0.00 0.00 2.62
654 1064 1.686355 TTGTCGTGGCAAACATCCTT 58.314 45.000 4.96 0.00 0.00 3.36
656 1066 2.500509 TTTTGTCGTGGCAAACATCC 57.499 45.000 0.00 0.00 37.98 3.51
657 1067 4.979197 TGTTATTTTGTCGTGGCAAACATC 59.021 37.500 0.00 0.00 37.98 3.06
676 1103 4.563580 CACACACAACGTACTCAACTGTTA 59.436 41.667 0.00 0.00 0.00 2.41
798 1236 1.920835 GGGAAGTCCACTGGCTCCT 60.921 63.158 0.00 0.00 37.91 3.69
800 1238 2.113243 AACGGGAAGTCCACTGGCTC 62.113 60.000 0.00 0.00 37.91 4.70
943 1389 0.528901 TCCACCACGACAACGACAAG 60.529 55.000 0.00 0.00 42.66 3.16
973 1423 0.298707 CTCGCGTGGTCGATTGAATG 59.701 55.000 5.77 0.00 37.87 2.67
978 1428 1.154016 CACTCTCGCGTGGTCGATT 60.154 57.895 5.77 0.00 37.87 3.34
995 1445 1.067846 CCGTCCTCTTCGACATGAACA 60.068 52.381 0.00 0.00 32.74 3.18
997 1447 1.067846 CACCGTCCTCTTCGACATGAA 60.068 52.381 0.00 0.00 32.74 2.57
1284 1784 3.001902 GCCGATGGTGAGGACGTCA 62.002 63.158 18.91 0.00 0.00 4.35
1559 2074 6.900189 AGTACTACGATTCAGATAACGATGG 58.100 40.000 0.00 0.00 0.00 3.51
1591 2107 9.403110 GGTTGAATTACCTACGTACATAGTATG 57.597 37.037 8.66 8.66 35.23 2.39
1595 2111 6.218746 GGGGTTGAATTACCTACGTACATAG 58.781 44.000 0.00 0.00 38.30 2.23
1596 2112 5.221224 CGGGGTTGAATTACCTACGTACATA 60.221 44.000 0.00 0.00 38.30 2.29
1597 2113 4.441913 CGGGGTTGAATTACCTACGTACAT 60.442 45.833 0.00 0.00 38.30 2.29
1598 2114 3.119173 CGGGGTTGAATTACCTACGTACA 60.119 47.826 0.00 0.00 38.30 2.90
1599 2115 3.447742 CGGGGTTGAATTACCTACGTAC 58.552 50.000 0.00 0.00 38.30 3.67
1601 2117 1.207811 CCGGGGTTGAATTACCTACGT 59.792 52.381 0.00 0.00 38.30 3.57
1603 2119 3.736720 GATCCGGGGTTGAATTACCTAC 58.263 50.000 0.00 0.00 38.30 3.18
1646 2167 0.802494 CGAAGGAAAATCACCGTGGG 59.198 55.000 0.00 0.00 0.00 4.61
1651 2172 6.238239 GCTAATTCTCTCGAAGGAAAATCACC 60.238 42.308 4.26 0.00 31.60 4.02
1734 2255 9.890629 GGCTGGATGTAATTGATATATCTGTAA 57.109 33.333 13.79 0.73 33.79 2.41
1735 2256 9.271921 AGGCTGGATGTAATTGATATATCTGTA 57.728 33.333 13.79 1.26 33.79 2.74
1736 2257 8.155620 AGGCTGGATGTAATTGATATATCTGT 57.844 34.615 13.79 0.00 33.79 3.41
1737 2258 8.484575 AGAGGCTGGATGTAATTGATATATCTG 58.515 37.037 13.79 0.00 33.79 2.90
1738 2259 8.484575 CAGAGGCTGGATGTAATTGATATATCT 58.515 37.037 13.79 0.00 33.79 1.98
1739 2260 7.226325 GCAGAGGCTGGATGTAATTGATATATC 59.774 40.741 5.73 5.73 36.96 1.63
1740 2261 7.052873 GCAGAGGCTGGATGTAATTGATATAT 58.947 38.462 0.00 0.00 36.96 0.86
1741 2262 6.013466 TGCAGAGGCTGGATGTAATTGATATA 60.013 38.462 0.00 0.00 41.91 0.86
1742 2263 5.221986 TGCAGAGGCTGGATGTAATTGATAT 60.222 40.000 0.00 0.00 41.91 1.63
1743 2264 4.102996 TGCAGAGGCTGGATGTAATTGATA 59.897 41.667 0.00 0.00 41.91 2.15
1744 2265 3.117776 TGCAGAGGCTGGATGTAATTGAT 60.118 43.478 0.00 0.00 41.91 2.57
1745 2266 2.239402 TGCAGAGGCTGGATGTAATTGA 59.761 45.455 0.00 0.00 41.91 2.57
1746 2267 2.646930 TGCAGAGGCTGGATGTAATTG 58.353 47.619 0.00 0.00 41.91 2.32
1747 2268 3.019564 GTTGCAGAGGCTGGATGTAATT 58.980 45.455 0.00 0.00 41.91 1.40
1748 2269 2.025981 TGTTGCAGAGGCTGGATGTAAT 60.026 45.455 0.00 0.00 41.91 1.89
1749 2270 1.350684 TGTTGCAGAGGCTGGATGTAA 59.649 47.619 0.00 0.00 41.91 2.41
1750 2271 0.983467 TGTTGCAGAGGCTGGATGTA 59.017 50.000 0.00 0.00 41.91 2.29
1751 2272 0.111061 TTGTTGCAGAGGCTGGATGT 59.889 50.000 0.00 0.00 41.91 3.06
1752 2273 0.524862 GTTGTTGCAGAGGCTGGATG 59.475 55.000 0.00 0.00 41.91 3.51
1753 2274 0.957395 CGTTGTTGCAGAGGCTGGAT 60.957 55.000 0.00 0.00 41.91 3.41
1754 2275 1.597854 CGTTGTTGCAGAGGCTGGA 60.598 57.895 0.00 0.00 41.91 3.86
1755 2276 2.949106 CGTTGTTGCAGAGGCTGG 59.051 61.111 0.00 0.00 41.91 4.85
1756 2277 2.253452 GCGTTGTTGCAGAGGCTG 59.747 61.111 0.00 0.00 41.91 4.85
1757 2278 2.203195 TGCGTTGTTGCAGAGGCT 60.203 55.556 11.11 0.00 40.62 4.58
1763 2284 2.851805 TTGTGTATTGCGTTGTTGCA 57.148 40.000 0.00 0.00 44.61 4.08
1764 2285 3.733224 TCATTTGTGTATTGCGTTGTTGC 59.267 39.130 0.00 0.00 0.00 4.17
1765 2286 4.737279 TGTCATTTGTGTATTGCGTTGTTG 59.263 37.500 0.00 0.00 0.00 3.33
1766 2287 4.737765 GTGTCATTTGTGTATTGCGTTGTT 59.262 37.500 0.00 0.00 0.00 2.83
1767 2288 4.036262 AGTGTCATTTGTGTATTGCGTTGT 59.964 37.500 0.00 0.00 0.00 3.32
1768 2289 4.536065 AGTGTCATTTGTGTATTGCGTTG 58.464 39.130 0.00 0.00 0.00 4.10
1769 2290 4.829064 AGTGTCATTTGTGTATTGCGTT 57.171 36.364 0.00 0.00 0.00 4.84
1770 2291 4.143200 CGTAGTGTCATTTGTGTATTGCGT 60.143 41.667 0.00 0.00 0.00 5.24
1771 2292 4.322934 CGTAGTGTCATTTGTGTATTGCG 58.677 43.478 0.00 0.00 0.00 4.85
1772 2293 4.390603 TCCGTAGTGTCATTTGTGTATTGC 59.609 41.667 0.00 0.00 0.00 3.56
1773 2294 6.477742 CATCCGTAGTGTCATTTGTGTATTG 58.522 40.000 0.00 0.00 0.00 1.90
1774 2295 5.064707 GCATCCGTAGTGTCATTTGTGTATT 59.935 40.000 0.00 0.00 0.00 1.89
1775 2296 4.570772 GCATCCGTAGTGTCATTTGTGTAT 59.429 41.667 0.00 0.00 0.00 2.29
1776 2297 3.930229 GCATCCGTAGTGTCATTTGTGTA 59.070 43.478 0.00 0.00 0.00 2.90
1777 2298 2.742053 GCATCCGTAGTGTCATTTGTGT 59.258 45.455 0.00 0.00 0.00 3.72
1778 2299 2.741517 TGCATCCGTAGTGTCATTTGTG 59.258 45.455 0.00 0.00 0.00 3.33
1779 2300 2.742053 GTGCATCCGTAGTGTCATTTGT 59.258 45.455 0.00 0.00 0.00 2.83
1780 2301 2.741517 TGTGCATCCGTAGTGTCATTTG 59.258 45.455 0.00 0.00 0.00 2.32
1781 2302 3.052455 TGTGCATCCGTAGTGTCATTT 57.948 42.857 0.00 0.00 0.00 2.32
1782 2303 2.760634 TGTGCATCCGTAGTGTCATT 57.239 45.000 0.00 0.00 0.00 2.57
1783 2304 2.988010 ATGTGCATCCGTAGTGTCAT 57.012 45.000 0.00 0.00 0.00 3.06
1784 2305 3.878160 TTATGTGCATCCGTAGTGTCA 57.122 42.857 0.00 0.00 0.00 3.58
1785 2306 8.595533 CATAATATTATGTGCATCCGTAGTGTC 58.404 37.037 22.33 0.00 36.60 3.67
1786 2307 7.549134 CCATAATATTATGTGCATCCGTAGTGT 59.451 37.037 26.36 0.00 39.04 3.55
1787 2308 7.763985 TCCATAATATTATGTGCATCCGTAGTG 59.236 37.037 26.36 11.76 39.04 2.74
1788 2309 7.847096 TCCATAATATTATGTGCATCCGTAGT 58.153 34.615 26.36 0.00 39.04 2.73
1789 2310 8.716646 TTCCATAATATTATGTGCATCCGTAG 57.283 34.615 26.36 12.30 39.04 3.51
1790 2311 9.508642 TTTTCCATAATATTATGTGCATCCGTA 57.491 29.630 26.36 7.46 39.04 4.02
1791 2312 7.994425 TTTCCATAATATTATGTGCATCCGT 57.006 32.000 26.36 0.00 39.04 4.69
1792 2313 7.485913 GCTTTTCCATAATATTATGTGCATCCG 59.514 37.037 26.36 13.96 39.04 4.18
1793 2314 8.526147 AGCTTTTCCATAATATTATGTGCATCC 58.474 33.333 26.36 14.48 39.04 3.51
1794 2315 9.918630 AAGCTTTTCCATAATATTATGTGCATC 57.081 29.630 26.36 14.57 39.04 3.91
1795 2316 9.918630 GAAGCTTTTCCATAATATTATGTGCAT 57.081 29.630 26.36 17.13 39.04 3.96
1796 2317 8.911965 TGAAGCTTTTCCATAATATTATGTGCA 58.088 29.630 26.36 13.13 39.04 4.57
1797 2318 9.748708 TTGAAGCTTTTCCATAATATTATGTGC 57.251 29.630 26.36 21.19 39.04 4.57
1805 2326 9.820725 CCATTGATTTGAAGCTTTTCCATAATA 57.179 29.630 0.00 0.00 0.00 0.98
1806 2327 8.542080 TCCATTGATTTGAAGCTTTTCCATAAT 58.458 29.630 0.00 0.00 0.00 1.28
1807 2328 7.818930 GTCCATTGATTTGAAGCTTTTCCATAA 59.181 33.333 0.00 0.00 0.00 1.90
1808 2329 7.322664 GTCCATTGATTTGAAGCTTTTCCATA 58.677 34.615 0.00 0.00 0.00 2.74
1809 2330 6.168389 GTCCATTGATTTGAAGCTTTTCCAT 58.832 36.000 0.00 0.00 0.00 3.41
1810 2331 5.540911 GTCCATTGATTTGAAGCTTTTCCA 58.459 37.500 0.00 0.00 0.00 3.53
1811 2332 4.622740 CGTCCATTGATTTGAAGCTTTTCC 59.377 41.667 0.00 0.00 0.00 3.13
1812 2333 4.622740 CCGTCCATTGATTTGAAGCTTTTC 59.377 41.667 0.00 0.00 0.00 2.29
1816 2337 2.094675 CCCGTCCATTGATTTGAAGCT 58.905 47.619 0.00 0.00 0.00 3.74
1836 2358 1.136057 GGTCGACGCAAAATCAAGGAC 60.136 52.381 9.92 0.00 0.00 3.85
1853 2375 2.677979 GCAAACGGAGGAAGCGGTC 61.678 63.158 0.00 0.00 0.00 4.79
1880 2548 0.613777 GAGGTAGTTGGGTCCACAGG 59.386 60.000 0.00 0.00 0.00 4.00
1881 2549 0.613777 GGAGGTAGTTGGGTCCACAG 59.386 60.000 0.00 0.00 0.00 3.66
1882 2550 0.104882 TGGAGGTAGTTGGGTCCACA 60.105 55.000 0.00 0.00 34.03 4.17
1883 2551 1.286248 ATGGAGGTAGTTGGGTCCAC 58.714 55.000 0.00 0.00 41.88 4.02
1884 2552 2.053747 AATGGAGGTAGTTGGGTCCA 57.946 50.000 0.00 0.00 43.23 4.02
1885 2553 2.576648 AGAAATGGAGGTAGTTGGGTCC 59.423 50.000 0.00 0.00 0.00 4.46
1886 2554 4.019231 AGAAGAAATGGAGGTAGTTGGGTC 60.019 45.833 0.00 0.00 0.00 4.46
1887 2555 3.916989 AGAAGAAATGGAGGTAGTTGGGT 59.083 43.478 0.00 0.00 0.00 4.51
1888 2556 4.576330 AGAAGAAATGGAGGTAGTTGGG 57.424 45.455 0.00 0.00 0.00 4.12
1889 2557 6.301169 AGTAGAAGAAATGGAGGTAGTTGG 57.699 41.667 0.00 0.00 0.00 3.77
1890 2558 9.535878 GATAAGTAGAAGAAATGGAGGTAGTTG 57.464 37.037 0.00 0.00 0.00 3.16
1891 2559 9.495382 AGATAAGTAGAAGAAATGGAGGTAGTT 57.505 33.333 0.00 0.00 0.00 2.24
1892 2560 9.138596 GAGATAAGTAGAAGAAATGGAGGTAGT 57.861 37.037 0.00 0.00 0.00 2.73
1893 2561 8.581578 GGAGATAAGTAGAAGAAATGGAGGTAG 58.418 40.741 0.00 0.00 0.00 3.18
1894 2562 8.290277 AGGAGATAAGTAGAAGAAATGGAGGTA 58.710 37.037 0.00 0.00 0.00 3.08
1895 2563 7.136203 AGGAGATAAGTAGAAGAAATGGAGGT 58.864 38.462 0.00 0.00 0.00 3.85
1896 2564 7.288852 TGAGGAGATAAGTAGAAGAAATGGAGG 59.711 40.741 0.00 0.00 0.00 4.30
1897 2565 8.243961 TGAGGAGATAAGTAGAAGAAATGGAG 57.756 38.462 0.00 0.00 0.00 3.86
1901 2569 7.014711 TCGCATGAGGAGATAAGTAGAAGAAAT 59.985 37.037 0.00 0.00 0.00 2.17
1911 2582 1.932604 GCCGTCGCATGAGGAGATAAG 60.933 57.143 0.00 0.00 34.03 1.73
1932 2603 2.159517 GGAAGAATACTTTGTGGCTGCG 60.160 50.000 0.00 0.00 36.39 5.18
1933 2604 2.164422 GGGAAGAATACTTTGTGGCTGC 59.836 50.000 0.00 0.00 36.39 5.25
1937 2608 2.420022 CGCTGGGAAGAATACTTTGTGG 59.580 50.000 0.00 0.00 36.39 4.17
1968 2640 1.668101 GAGCGAGGGTGTGGGTAGAG 61.668 65.000 0.00 0.00 0.00 2.43
2005 2696 4.899239 GGAGAGCGTCCCGGCATG 62.899 72.222 0.00 0.00 39.88 4.06
2037 2728 2.189521 GACGGGGTTGCGATGGAT 59.810 61.111 0.00 0.00 0.00 3.41
2058 2913 2.844839 GGGCCGGCAGATCTAGGT 60.845 66.667 30.85 0.00 0.00 3.08
2091 3288 4.828296 GGCTGTGGATGGGGCTGG 62.828 72.222 0.00 0.00 0.00 4.85
2127 3324 2.110213 GGTTGCGGTGACTGGTCA 59.890 61.111 0.00 0.00 37.24 4.02
2145 3342 4.080687 TGATGAACACATGGAGAAATGCA 58.919 39.130 0.00 0.00 0.00 3.96
2160 3357 3.006247 GTCAAGGGAGAAGCTGATGAAC 58.994 50.000 0.00 0.00 0.00 3.18
2162 3359 1.205655 CGTCAAGGGAGAAGCTGATGA 59.794 52.381 0.00 0.00 0.00 2.92
2167 3364 0.892063 GAGTCGTCAAGGGAGAAGCT 59.108 55.000 0.00 0.00 0.00 3.74
2177 3374 0.613260 CCATGGGAAGGAGTCGTCAA 59.387 55.000 2.85 0.00 0.00 3.18
2220 3417 1.064906 CAGATGTTGGAGGCAGGATGT 60.065 52.381 0.00 0.00 39.31 3.06
2230 3427 3.148412 CATGTTGTGGTCAGATGTTGGA 58.852 45.455 0.00 0.00 0.00 3.53
2274 3478 7.031372 CCATATTGCAACATGGACTATATTGC 58.969 38.462 29.24 7.77 43.80 3.56
2297 3501 1.852309 ACATGGGCCTATGAACATCCA 59.148 47.619 33.41 4.67 0.00 3.41
2298 3502 2.158623 TGACATGGGCCTATGAACATCC 60.159 50.000 33.41 15.12 0.00 3.51
2303 3507 1.632920 TGTGTGACATGGGCCTATGAA 59.367 47.619 33.41 18.77 0.00 2.57
2307 3511 1.340893 CCATTGTGTGACATGGGCCTA 60.341 52.381 4.53 0.00 0.00 3.93
2321 3525 1.203162 TGGGCTTTGGTCATCCATTGT 60.203 47.619 0.00 0.00 43.91 2.71
2333 3537 6.005823 TCCATCTTGTATGATATGGGCTTTG 58.994 40.000 0.00 0.00 39.51 2.77
2343 3547 4.040047 TGGTGACCTCCATCTTGTATGAT 58.960 43.478 2.11 0.00 31.96 2.45
2380 3584 1.134907 GCCTTTGATCACCCATTGCAG 60.135 52.381 0.00 0.00 0.00 4.41
2406 3612 2.106131 ACTGTTGTGCTCGCGTCA 59.894 55.556 5.77 2.39 0.00 4.35
2407 3613 2.546321 CACTGTTGTGCTCGCGTC 59.454 61.111 5.77 0.00 37.38 5.19
2408 3614 2.967076 CCACTGTTGTGCTCGCGT 60.967 61.111 5.77 0.00 42.54 6.01
2409 3615 4.374702 GCCACTGTTGTGCTCGCG 62.375 66.667 0.00 0.00 42.54 5.87
2410 3616 2.974698 AGCCACTGTTGTGCTCGC 60.975 61.111 0.00 0.00 42.54 5.03
2411 3617 2.610694 CCAGCCACTGTTGTGCTCG 61.611 63.158 0.00 0.00 42.54 5.03
2412 3618 2.263741 CCCAGCCACTGTTGTGCTC 61.264 63.158 0.00 0.00 42.54 4.26
2413 3619 2.203394 CCCAGCCACTGTTGTGCT 60.203 61.111 0.00 0.00 42.54 4.40
2414 3620 2.519302 ACCCAGCCACTGTTGTGC 60.519 61.111 0.00 0.00 42.54 4.57
2415 3621 1.149174 AGACCCAGCCACTGTTGTG 59.851 57.895 0.00 0.00 43.45 3.33
2416 3622 1.149174 CAGACCCAGCCACTGTTGT 59.851 57.895 0.00 0.00 0.00 3.32
2417 3623 1.149174 ACAGACCCAGCCACTGTTG 59.851 57.895 0.00 0.00 41.21 3.33
2418 3624 1.922821 AACAGACCCAGCCACTGTT 59.077 52.632 0.00 0.00 45.79 3.16
2419 3625 1.149174 CAACAGACCCAGCCACTGT 59.851 57.895 0.00 0.00 45.02 3.55
2420 3626 0.037303 ATCAACAGACCCAGCCACTG 59.963 55.000 0.00 0.00 37.62 3.66
2421 3627 0.037303 CATCAACAGACCCAGCCACT 59.963 55.000 0.00 0.00 0.00 4.00
2422 3628 1.589716 GCATCAACAGACCCAGCCAC 61.590 60.000 0.00 0.00 0.00 5.01
2423 3629 1.303561 GCATCAACAGACCCAGCCA 60.304 57.895 0.00 0.00 0.00 4.75
2424 3630 2.401766 CGCATCAACAGACCCAGCC 61.402 63.158 0.00 0.00 0.00 4.85
2425 3631 1.375908 TCGCATCAACAGACCCAGC 60.376 57.895 0.00 0.00 0.00 4.85
2426 3632 1.354337 CGTCGCATCAACAGACCCAG 61.354 60.000 0.00 0.00 0.00 4.45
2427 3633 1.374125 CGTCGCATCAACAGACCCA 60.374 57.895 0.00 0.00 0.00 4.51
2428 3634 0.669318 TTCGTCGCATCAACAGACCC 60.669 55.000 0.00 0.00 0.00 4.46
2429 3635 0.716108 CTTCGTCGCATCAACAGACC 59.284 55.000 0.00 0.00 0.00 3.85
2430 3636 0.716108 CCTTCGTCGCATCAACAGAC 59.284 55.000 0.00 0.00 0.00 3.51
2431 3637 0.317160 ACCTTCGTCGCATCAACAGA 59.683 50.000 0.00 0.00 0.00 3.41
2432 3638 1.136252 CAACCTTCGTCGCATCAACAG 60.136 52.381 0.00 0.00 0.00 3.16
2433 3639 0.865111 CAACCTTCGTCGCATCAACA 59.135 50.000 0.00 0.00 0.00 3.33
2434 3640 1.136336 GTCAACCTTCGTCGCATCAAC 60.136 52.381 0.00 0.00 0.00 3.18
2435 3641 1.144969 GTCAACCTTCGTCGCATCAA 58.855 50.000 0.00 0.00 0.00 2.57
2436 3642 0.032815 TGTCAACCTTCGTCGCATCA 59.967 50.000 0.00 0.00 0.00 3.07
2437 3643 1.359848 ATGTCAACCTTCGTCGCATC 58.640 50.000 0.00 0.00 0.00 3.91
2438 3644 2.268298 GTATGTCAACCTTCGTCGCAT 58.732 47.619 0.00 0.00 0.00 4.73
2439 3645 1.670674 GGTATGTCAACCTTCGTCGCA 60.671 52.381 0.00 0.00 36.53 5.10
2440 3646 0.997196 GGTATGTCAACCTTCGTCGC 59.003 55.000 0.00 0.00 36.53 5.19
2448 3654 2.423538 GGTGATGCAAGGTATGTCAACC 59.576 50.000 0.00 0.00 40.06 3.77
2449 3655 3.081061 TGGTGATGCAAGGTATGTCAAC 58.919 45.455 0.00 0.00 0.00 3.18
2450 3656 3.431673 TGGTGATGCAAGGTATGTCAA 57.568 42.857 0.00 0.00 0.00 3.18
2451 3657 3.431673 TTGGTGATGCAAGGTATGTCA 57.568 42.857 0.00 0.00 0.00 3.58
2452 3658 4.202441 AGATTGGTGATGCAAGGTATGTC 58.798 43.478 0.00 0.00 0.00 3.06
2453 3659 4.202441 GAGATTGGTGATGCAAGGTATGT 58.798 43.478 0.00 0.00 0.00 2.29
2454 3660 4.201657 TGAGATTGGTGATGCAAGGTATG 58.798 43.478 0.00 0.00 0.00 2.39
2455 3661 4.508551 TGAGATTGGTGATGCAAGGTAT 57.491 40.909 0.00 0.00 0.00 2.73
2456 3662 3.998913 TGAGATTGGTGATGCAAGGTA 57.001 42.857 0.00 0.00 0.00 3.08
2457 3663 2.885135 TGAGATTGGTGATGCAAGGT 57.115 45.000 0.00 0.00 0.00 3.50
2458 3664 2.426024 CCTTGAGATTGGTGATGCAAGG 59.574 50.000 0.00 0.00 44.19 3.61
2459 3665 3.349927 TCCTTGAGATTGGTGATGCAAG 58.650 45.455 0.00 0.00 34.18 4.01
2460 3666 3.349927 CTCCTTGAGATTGGTGATGCAA 58.650 45.455 0.00 0.00 0.00 4.08
2461 3667 2.356432 CCTCCTTGAGATTGGTGATGCA 60.356 50.000 0.00 0.00 0.00 3.96
2462 3668 2.092753 TCCTCCTTGAGATTGGTGATGC 60.093 50.000 0.00 0.00 0.00 3.91
2463 3669 3.199508 ACTCCTCCTTGAGATTGGTGATG 59.800 47.826 0.00 0.00 36.22 3.07
2464 3670 3.458831 ACTCCTCCTTGAGATTGGTGAT 58.541 45.455 0.00 0.00 36.22 3.06
2465 3671 2.907892 ACTCCTCCTTGAGATTGGTGA 58.092 47.619 0.00 0.00 36.22 4.02
2466 3672 3.710209 AACTCCTCCTTGAGATTGGTG 57.290 47.619 0.00 0.00 36.22 4.17
2467 3673 5.488919 TGATAAACTCCTCCTTGAGATTGGT 59.511 40.000 0.00 0.00 36.22 3.67
2468 3674 5.994250 TGATAAACTCCTCCTTGAGATTGG 58.006 41.667 0.00 0.00 36.22 3.16
2469 3675 9.270640 CTATTGATAAACTCCTCCTTGAGATTG 57.729 37.037 0.00 0.00 36.22 2.67
2470 3676 8.435982 CCTATTGATAAACTCCTCCTTGAGATT 58.564 37.037 0.00 0.00 36.22 2.40
2471 3677 7.017056 CCCTATTGATAAACTCCTCCTTGAGAT 59.983 40.741 0.00 0.00 36.22 2.75
2472 3678 6.327626 CCCTATTGATAAACTCCTCCTTGAGA 59.672 42.308 0.00 0.00 36.22 3.27
2473 3679 6.100424 ACCCTATTGATAAACTCCTCCTTGAG 59.900 42.308 0.00 0.00 38.37 3.02
2474 3680 5.970640 ACCCTATTGATAAACTCCTCCTTGA 59.029 40.000 0.00 0.00 0.00 3.02
2475 3681 6.253946 ACCCTATTGATAAACTCCTCCTTG 57.746 41.667 0.00 0.00 0.00 3.61
2476 3682 6.910259 AACCCTATTGATAAACTCCTCCTT 57.090 37.500 0.00 0.00 0.00 3.36
2477 3683 7.140304 AGTAACCCTATTGATAAACTCCTCCT 58.860 38.462 0.00 0.00 0.00 3.69
2478 3684 7.376335 AGTAACCCTATTGATAAACTCCTCC 57.624 40.000 0.00 0.00 0.00 4.30
2479 3685 8.265764 ACAAGTAACCCTATTGATAAACTCCTC 58.734 37.037 0.00 0.00 0.00 3.71
2480 3686 8.047310 CACAAGTAACCCTATTGATAAACTCCT 58.953 37.037 0.00 0.00 0.00 3.69
2481 3687 7.827729 ACACAAGTAACCCTATTGATAAACTCC 59.172 37.037 0.00 0.00 0.00 3.85
2482 3688 8.665685 CACACAAGTAACCCTATTGATAAACTC 58.334 37.037 0.00 0.00 0.00 3.01
2483 3689 7.610305 CCACACAAGTAACCCTATTGATAAACT 59.390 37.037 0.00 0.00 0.00 2.66
2484 3690 7.392393 ACCACACAAGTAACCCTATTGATAAAC 59.608 37.037 0.00 0.00 0.00 2.01
2485 3691 7.463431 ACCACACAAGTAACCCTATTGATAAA 58.537 34.615 0.00 0.00 0.00 1.40
2486 3692 7.023171 ACCACACAAGTAACCCTATTGATAA 57.977 36.000 0.00 0.00 0.00 1.75
2487 3693 6.442564 AGACCACACAAGTAACCCTATTGATA 59.557 38.462 0.00 0.00 0.00 2.15
2488 3694 5.250774 AGACCACACAAGTAACCCTATTGAT 59.749 40.000 0.00 0.00 0.00 2.57
2489 3695 4.595781 AGACCACACAAGTAACCCTATTGA 59.404 41.667 0.00 0.00 0.00 2.57
2490 3696 4.906618 AGACCACACAAGTAACCCTATTG 58.093 43.478 0.00 0.00 0.00 1.90
2491 3697 5.783875 AGTAGACCACACAAGTAACCCTATT 59.216 40.000 0.00 0.00 0.00 1.73
2492 3698 5.339477 AGTAGACCACACAAGTAACCCTAT 58.661 41.667 0.00 0.00 0.00 2.57
2493 3699 4.744237 AGTAGACCACACAAGTAACCCTA 58.256 43.478 0.00 0.00 0.00 3.53
2494 3700 3.584294 AGTAGACCACACAAGTAACCCT 58.416 45.455 0.00 0.00 0.00 4.34
2495 3701 4.062991 CAAGTAGACCACACAAGTAACCC 58.937 47.826 0.00 0.00 0.00 4.11
2496 3702 4.062991 CCAAGTAGACCACACAAGTAACC 58.937 47.826 0.00 0.00 0.00 2.85
2497 3703 4.062991 CCCAAGTAGACCACACAAGTAAC 58.937 47.826 0.00 0.00 0.00 2.50
2498 3704 3.968649 TCCCAAGTAGACCACACAAGTAA 59.031 43.478 0.00 0.00 0.00 2.24
2499 3705 3.322828 GTCCCAAGTAGACCACACAAGTA 59.677 47.826 0.00 0.00 0.00 2.24
2500 3706 2.104281 GTCCCAAGTAGACCACACAAGT 59.896 50.000 0.00 0.00 0.00 3.16
2501 3707 2.767505 GTCCCAAGTAGACCACACAAG 58.232 52.381 0.00 0.00 0.00 3.16
2502 3708 2.922740 GTCCCAAGTAGACCACACAA 57.077 50.000 0.00 0.00 0.00 3.33


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.