Multiple sequence alignment - TraesCS2B01G525900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G525900 chr2B 100.000 5968 0 0 1 5968 719965090 719971057 0.000000e+00 11021.0
1 TraesCS2B01G525900 chr2B 92.838 740 33 8 1642 2362 321316512 321317250 0.000000e+00 1055.0
2 TraesCS2B01G525900 chr2B 94.196 224 13 0 5698 5921 672040698 672040475 5.730000e-90 342.0
3 TraesCS2B01G525900 chr2B 78.231 441 66 18 4912 5334 719978918 719979346 7.680000e-64 255.0
4 TraesCS2B01G525900 chr2B 94.118 85 5 0 4350 4434 719978784 719978868 4.850000e-26 130.0
5 TraesCS2B01G525900 chr2A 90.193 4619 252 78 876 5385 728405730 728410256 0.000000e+00 5834.0
6 TraesCS2B01G525900 chr2A 87.642 793 66 14 1 779 728404923 728405697 0.000000e+00 893.0
7 TraesCS2B01G525900 chr2A 94.714 227 8 4 5695 5920 217468 217691 3.420000e-92 350.0
8 TraesCS2B01G525900 chr2A 91.429 210 15 2 5382 5591 728410387 728410593 9.790000e-73 285.0
9 TraesCS2B01G525900 chr2A 81.492 362 39 17 4950 5300 728413147 728413491 7.620000e-69 272.0
10 TraesCS2B01G525900 chr2A 85.714 98 14 0 4339 4436 766092281 766092378 2.940000e-18 104.0
11 TraesCS2B01G525900 chr2D 93.624 2039 96 15 3369 5385 593512647 593514673 0.000000e+00 3014.0
12 TraesCS2B01G525900 chr2D 89.054 1416 111 22 1971 3371 593511103 593512489 0.000000e+00 1716.0
13 TraesCS2B01G525900 chr2D 88.831 1155 86 26 883 2013 593509962 593511097 0.000000e+00 1378.0
14 TraesCS2B01G525900 chr2D 87.730 815 61 12 1 814 593509177 593509953 0.000000e+00 915.0
15 TraesCS2B01G525900 chr2D 88.485 330 21 7 5382 5701 593514806 593515128 3.370000e-102 383.0
16 TraesCS2B01G525900 chr2D 79.494 356 32 15 4007 4347 593515589 593515918 1.300000e-51 215.0
17 TraesCS2B01G525900 chr2D 85.906 149 17 3 5062 5209 593516408 593516553 8.010000e-34 156.0
18 TraesCS2B01G525900 chr2D 85.714 98 14 0 4339 4436 634166813 634166716 2.940000e-18 104.0
19 TraesCS2B01G525900 chr2D 95.238 63 3 0 4372 4434 593515918 593515980 3.810000e-17 100.0
20 TraesCS2B01G525900 chr2D 83.673 98 16 0 4339 4436 74528438 74528535 6.370000e-15 93.5
21 TraesCS2B01G525900 chr2D 91.803 61 4 1 5019 5078 593516331 593516391 3.830000e-12 84.2
22 TraesCS2B01G525900 chr3A 94.059 808 28 5 1639 2428 181043638 181044443 0.000000e+00 1208.0
23 TraesCS2B01G525900 chr4B 94.015 802 30 6 1644 2428 663441446 663442246 0.000000e+00 1199.0
24 TraesCS2B01G525900 chr7B 91.985 811 45 5 1639 2431 260971379 260970571 0.000000e+00 1120.0
25 TraesCS2B01G525900 chr5B 93.298 746 30 5 1639 2365 665085208 665084464 0.000000e+00 1083.0
26 TraesCS2B01G525900 chr5B 93.548 558 18 3 1891 2431 484093588 484093032 0.000000e+00 815.0
27 TraesCS2B01G525900 chr5B 94.595 407 21 1 1642 2048 464383848 464384253 3.930000e-176 628.0
28 TraesCS2B01G525900 chr5B 92.786 402 11 3 2044 2428 464393232 464393632 3.120000e-157 566.0
29 TraesCS2B01G525900 chr5B 94.643 224 10 2 5701 5923 114132861 114133083 4.430000e-91 346.0
30 TraesCS2B01G525900 chr5B 94.273 227 12 1 5694 5919 528889136 528889362 4.430000e-91 346.0
31 TraesCS2B01G525900 chr5B 93.133 233 12 4 5688 5919 658367711 658367940 7.410000e-89 339.0
32 TraesCS2B01G525900 chr6B 95.556 225 10 0 5698 5922 8131741 8131965 1.580000e-95 361.0
33 TraesCS2B01G525900 chr6B 100.000 30 0 0 3023 3052 494086792 494086821 8.360000e-04 56.5
34 TraesCS2B01G525900 chr6B 100.000 28 0 0 3030 3057 494086781 494086754 1.100000e-02 52.8
35 TraesCS2B01G525900 chr3B 94.619 223 12 0 5699 5921 807484271 807484049 4.430000e-91 346.0
36 TraesCS2B01G525900 chr3B 94.977 219 11 0 5702 5920 167964104 167963886 1.590000e-90 344.0
37 TraesCS2B01G525900 chr1D 94.170 223 13 0 5699 5921 378803591 378803813 2.060000e-89 340.0
38 TraesCS2B01G525900 chr4A 91.367 139 11 1 677 815 255589750 255589887 7.900000e-44 189.0
39 TraesCS2B01G525900 chr1A 84.615 91 12 2 4339 4428 537447501 537447412 8.240000e-14 89.8
40 TraesCS2B01G525900 chr3D 97.143 35 1 0 3023 3057 68079955 68079989 6.460000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G525900 chr2B 719965090 719971057 5967 False 11021.000000 11021 100.000000 1 5968 1 chr2B.!!$F2 5967
1 TraesCS2B01G525900 chr2B 321316512 321317250 738 False 1055.000000 1055 92.838000 1642 2362 1 chr2B.!!$F1 720
2 TraesCS2B01G525900 chr2A 728404923 728413491 8568 False 1821.000000 5834 87.689000 1 5591 4 chr2A.!!$F3 5590
3 TraesCS2B01G525900 chr2D 593509177 593516553 7376 False 884.577778 3014 88.907222 1 5701 9 chr2D.!!$F2 5700
4 TraesCS2B01G525900 chr3A 181043638 181044443 805 False 1208.000000 1208 94.059000 1639 2428 1 chr3A.!!$F1 789
5 TraesCS2B01G525900 chr4B 663441446 663442246 800 False 1199.000000 1199 94.015000 1644 2428 1 chr4B.!!$F1 784
6 TraesCS2B01G525900 chr7B 260970571 260971379 808 True 1120.000000 1120 91.985000 1639 2431 1 chr7B.!!$R1 792
7 TraesCS2B01G525900 chr5B 665084464 665085208 744 True 1083.000000 1083 93.298000 1639 2365 1 chr5B.!!$R2 726
8 TraesCS2B01G525900 chr5B 484093032 484093588 556 True 815.000000 815 93.548000 1891 2431 1 chr5B.!!$R1 540

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
734 747 0.180406 ACTTGTGAGTTGAGGCGGTT 59.820 50.0 0.00 0.0 29.87 4.44 F
1080 1098 0.038892 CACTGGAACCACATGCAAGC 60.039 55.0 0.00 0.0 0.00 4.01 F
1475 1518 0.320247 CGAGCAGAGACAAGCTTGGT 60.320 55.0 29.18 16.7 42.04 3.67 F
3227 3394 0.758685 TTGCCCCAACCTCCAAAGTG 60.759 55.0 0.00 0.0 0.00 3.16 F
3789 4140 0.250038 CATCAGGGGCAGGTATGTCG 60.250 60.0 0.00 0.0 0.00 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1826 1874 0.038251 CACAGCAGAACGAGCCTACA 60.038 55.000 0.0 0.0 0.00 2.74 R
2750 2913 2.860009 AGACACAGAGACACGAACCTA 58.140 47.619 0.0 0.0 0.00 3.08 R
3453 3787 2.225017 ACCCAATGGAAACCACTACTGG 60.225 50.000 0.0 0.0 35.80 4.00 R
4533 4886 1.226717 GAGGCTACAGTCCTTCGCG 60.227 63.158 0.0 0.0 33.24 5.87 R
5731 6248 0.042731 AGGGGTCGGATTCTGGAAGA 59.957 55.000 0.0 0.0 44.68 2.87 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 52 1.229975 TGCTGTGATGTGCAACCTCG 61.230 55.000 0.00 0.00 33.88 4.63
54 55 2.621338 CTGTGATGTGCAACCTCGTAT 58.379 47.619 0.00 0.00 33.88 3.06
110 111 3.006003 GCTACGGGTGGAAATTTTGGAAA 59.994 43.478 0.00 0.00 0.00 3.13
118 120 5.056480 GTGGAAATTTTGGAAAACTGGAGG 58.944 41.667 0.00 0.00 0.00 4.30
119 121 4.102367 TGGAAATTTTGGAAAACTGGAGGG 59.898 41.667 0.00 0.00 0.00 4.30
120 122 4.102524 GGAAATTTTGGAAAACTGGAGGGT 59.897 41.667 0.00 0.00 0.00 4.34
155 157 1.406887 GCAGACTCAATTCGGGGCTTA 60.407 52.381 0.00 0.00 0.00 3.09
183 186 3.261580 GCCAATGGATAACTTTGTTGCC 58.738 45.455 2.05 0.00 33.61 4.52
236 239 1.762708 CTCCTGAGTGTCTCCTCCTC 58.237 60.000 0.00 0.00 0.00 3.71
265 268 6.520792 TTTTACTTCTCTTTGTACTGCGAC 57.479 37.500 0.00 0.00 0.00 5.19
266 269 5.449107 TTACTTCTCTTTGTACTGCGACT 57.551 39.130 0.00 0.00 0.00 4.18
267 270 3.643763 ACTTCTCTTTGTACTGCGACTG 58.356 45.455 0.00 0.00 0.00 3.51
268 271 2.065993 TCTCTTTGTACTGCGACTGC 57.934 50.000 0.00 0.00 43.20 4.40
289 292 3.498397 GCGATATGTAACATTGTGGGAGG 59.502 47.826 0.00 0.00 0.00 4.30
309 312 2.419667 GTAGTTGTAGCGGCCAGAAAA 58.580 47.619 2.24 0.00 0.00 2.29
340 343 5.335191 CCTGTAAGAGCAGAACAATTGTTCC 60.335 44.000 36.20 25.88 46.16 3.62
414 422 7.443259 TTGTTTAGCTTACCCTGTGTATTTC 57.557 36.000 0.00 0.00 0.00 2.17
417 425 3.858247 AGCTTACCCTGTGTATTTCGAC 58.142 45.455 0.00 0.00 0.00 4.20
418 426 2.601763 GCTTACCCTGTGTATTTCGACG 59.398 50.000 0.00 0.00 0.00 5.12
426 434 1.411612 GTGTATTTCGACGGGATCCCT 59.588 52.381 28.42 15.42 0.00 4.20
427 435 2.624838 GTGTATTTCGACGGGATCCCTA 59.375 50.000 28.42 9.36 0.00 3.53
551 561 0.322322 TTGTTAACGGCGGTCATCCT 59.678 50.000 13.24 0.00 0.00 3.24
564 574 0.322816 TCATCCTGTTGCCAAGAGCC 60.323 55.000 0.00 0.00 42.71 4.70
612 622 4.074970 GGCGATGATTTTGAGGATACCAT 58.925 43.478 0.00 0.00 37.17 3.55
639 649 1.688269 TTTAGCGATGGTACCCGGGG 61.688 60.000 27.92 12.73 0.00 5.73
645 655 2.604299 GATGGTACCCGGGGCAGTTC 62.604 65.000 27.92 12.31 0.00 3.01
670 680 9.015577 TCTGTTATTTTAAGTTTTTGTCGCAAG 57.984 29.630 0.00 0.00 0.00 4.01
678 688 4.359706 AGTTTTTGTCGCAAGGTTCATTC 58.640 39.130 0.00 0.00 38.47 2.67
689 702 8.774586 GTCGCAAGGTTCATTCTGTTATATTAT 58.225 33.333 0.00 0.00 38.47 1.28
716 729 3.347958 TCCGAATTTTGTGCAGTTCAC 57.652 42.857 0.00 0.00 45.82 3.18
726 739 2.419673 TGTGCAGTTCACTTGTGAGTTG 59.580 45.455 3.61 7.61 45.81 3.16
729 742 2.289002 GCAGTTCACTTGTGAGTTGAGG 59.711 50.000 15.68 3.27 32.54 3.86
734 747 0.180406 ACTTGTGAGTTGAGGCGGTT 59.820 50.000 0.00 0.00 29.87 4.44
746 759 2.084546 GAGGCGGTTGCTGTAATCTTT 58.915 47.619 0.00 0.00 42.25 2.52
803 816 2.796593 GGCACATCTTTGTTTGCACTTC 59.203 45.455 0.00 0.00 32.34 3.01
831 844 3.425162 AAAATGGAAGTCTCTTCGCCT 57.575 42.857 3.88 0.00 0.00 5.52
832 845 3.425162 AAATGGAAGTCTCTTCGCCTT 57.575 42.857 3.88 0.00 0.00 4.35
833 846 2.393271 ATGGAAGTCTCTTCGCCTTG 57.607 50.000 3.88 0.00 0.00 3.61
834 847 1.048601 TGGAAGTCTCTTCGCCTTGT 58.951 50.000 3.88 0.00 0.00 3.16
835 848 2.244695 TGGAAGTCTCTTCGCCTTGTA 58.755 47.619 3.88 0.00 0.00 2.41
836 849 2.631062 TGGAAGTCTCTTCGCCTTGTAA 59.369 45.455 3.88 0.00 0.00 2.41
837 850 3.260884 TGGAAGTCTCTTCGCCTTGTAAT 59.739 43.478 3.88 0.00 0.00 1.89
838 851 4.464951 TGGAAGTCTCTTCGCCTTGTAATA 59.535 41.667 3.88 0.00 0.00 0.98
839 852 5.128827 TGGAAGTCTCTTCGCCTTGTAATAT 59.871 40.000 3.88 0.00 0.00 1.28
840 853 6.322969 TGGAAGTCTCTTCGCCTTGTAATATA 59.677 38.462 3.88 0.00 0.00 0.86
841 854 7.147794 TGGAAGTCTCTTCGCCTTGTAATATAA 60.148 37.037 3.88 0.00 0.00 0.98
842 855 7.382759 GGAAGTCTCTTCGCCTTGTAATATAAG 59.617 40.741 3.88 0.00 0.00 1.73
843 856 7.584122 AGTCTCTTCGCCTTGTAATATAAGA 57.416 36.000 0.00 0.00 0.00 2.10
844 857 7.653647 AGTCTCTTCGCCTTGTAATATAAGAG 58.346 38.462 0.00 0.00 39.72 2.85
845 858 6.363896 GTCTCTTCGCCTTGTAATATAAGAGC 59.636 42.308 0.00 0.41 38.75 4.09
846 859 5.220381 TCTTCGCCTTGTAATATAAGAGCG 58.780 41.667 18.58 18.58 41.63 5.03
847 860 4.579454 TCGCCTTGTAATATAAGAGCGT 57.421 40.909 21.37 0.00 41.34 5.07
848 861 4.940463 TCGCCTTGTAATATAAGAGCGTT 58.060 39.130 21.37 0.00 41.34 4.84
849 862 5.353938 TCGCCTTGTAATATAAGAGCGTTT 58.646 37.500 21.37 0.00 41.34 3.60
850 863 5.813672 TCGCCTTGTAATATAAGAGCGTTTT 59.186 36.000 21.37 0.00 41.34 2.43
851 864 6.314400 TCGCCTTGTAATATAAGAGCGTTTTT 59.686 34.615 21.37 0.00 41.34 1.94
852 865 6.627671 CGCCTTGTAATATAAGAGCGTTTTTC 59.372 38.462 17.35 0.00 38.65 2.29
853 866 7.469260 GCCTTGTAATATAAGAGCGTTTTTCA 58.531 34.615 0.00 0.00 0.00 2.69
854 867 8.129211 GCCTTGTAATATAAGAGCGTTTTTCAT 58.871 33.333 0.00 0.00 0.00 2.57
862 875 9.694137 ATATAAGAGCGTTTTTCATACTAGGAC 57.306 33.333 0.00 0.00 0.00 3.85
863 876 5.401531 AGAGCGTTTTTCATACTAGGACA 57.598 39.130 0.00 0.00 0.00 4.02
864 877 5.411781 AGAGCGTTTTTCATACTAGGACAG 58.588 41.667 0.00 0.00 0.00 3.51
865 878 5.047235 AGAGCGTTTTTCATACTAGGACAGT 60.047 40.000 0.00 0.00 41.62 3.55
866 879 6.152323 AGAGCGTTTTTCATACTAGGACAGTA 59.848 38.462 0.00 0.00 43.89 2.74
867 880 6.331061 AGCGTTTTTCATACTAGGACAGTAG 58.669 40.000 0.00 0.00 43.01 2.57
868 881 5.005490 GCGTTTTTCATACTAGGACAGTAGC 59.995 44.000 0.00 0.00 43.01 3.58
869 882 6.097356 CGTTTTTCATACTAGGACAGTAGCA 58.903 40.000 0.00 0.00 43.01 3.49
870 883 6.034683 CGTTTTTCATACTAGGACAGTAGCAC 59.965 42.308 0.00 0.00 43.01 4.40
871 884 6.599356 TTTTCATACTAGGACAGTAGCACA 57.401 37.500 0.00 0.00 43.01 4.57
872 885 5.578005 TTCATACTAGGACAGTAGCACAC 57.422 43.478 0.00 0.00 43.01 3.82
873 886 4.595986 TCATACTAGGACAGTAGCACACA 58.404 43.478 0.00 0.00 43.01 3.72
874 887 5.014202 TCATACTAGGACAGTAGCACACAA 58.986 41.667 0.00 0.00 43.01 3.33
875 888 3.944055 ACTAGGACAGTAGCACACAAG 57.056 47.619 0.00 0.00 34.98 3.16
876 889 2.028930 ACTAGGACAGTAGCACACAAGC 60.029 50.000 0.00 0.00 34.98 4.01
877 890 0.758734 AGGACAGTAGCACACAAGCA 59.241 50.000 0.00 0.00 36.85 3.91
878 891 0.868406 GGACAGTAGCACACAAGCAC 59.132 55.000 0.00 0.00 36.85 4.40
879 892 1.581934 GACAGTAGCACACAAGCACA 58.418 50.000 0.00 0.00 36.85 4.57
880 893 1.261619 GACAGTAGCACACAAGCACAC 59.738 52.381 0.00 0.00 36.85 3.82
881 894 1.298602 CAGTAGCACACAAGCACACA 58.701 50.000 0.00 0.00 36.85 3.72
911 924 2.061509 ATTCCGGTAAATTTCGGGGG 57.938 50.000 15.89 5.16 45.69 5.40
952 965 1.638388 TTGCATCAAAGCGAGCGAGG 61.638 55.000 0.00 0.00 37.31 4.63
953 966 2.817423 GCATCAAAGCGAGCGAGGG 61.817 63.158 0.00 0.00 0.00 4.30
954 967 1.153568 CATCAAAGCGAGCGAGGGA 60.154 57.895 0.00 0.00 0.00 4.20
962 975 2.493973 GAGCGAGGGAGCACTGAG 59.506 66.667 0.00 0.00 40.15 3.35
1003 1016 0.179000 GTGGGTACAGGAGCTCATGG 59.821 60.000 29.98 14.25 30.95 3.66
1017 1030 0.458370 TCATGGTCACAGATCACGCG 60.458 55.000 3.53 3.53 0.00 6.01
1078 1096 1.142667 TCTCACTGGAACCACATGCAA 59.857 47.619 0.00 0.00 0.00 4.08
1079 1097 1.538512 CTCACTGGAACCACATGCAAG 59.461 52.381 0.00 0.00 0.00 4.01
1080 1098 0.038892 CACTGGAACCACATGCAAGC 60.039 55.000 0.00 0.00 0.00 4.01
1082 1100 2.126346 GGAACCACATGCAAGCGC 60.126 61.111 0.00 0.00 39.24 5.92
1083 1101 2.126346 GAACCACATGCAAGCGCC 60.126 61.111 2.29 0.00 37.32 6.53
1084 1102 3.631487 GAACCACATGCAAGCGCCC 62.631 63.158 2.29 0.00 37.32 6.13
1473 1516 1.633852 GCCGAGCAGAGACAAGCTTG 61.634 60.000 24.84 24.84 42.04 4.01
1475 1518 0.320247 CGAGCAGAGACAAGCTTGGT 60.320 55.000 29.18 16.70 42.04 3.67
1577 1620 3.418995 GCCCATGTCTAGATGCATTCAT 58.581 45.455 0.00 0.00 35.17 2.57
1598 1641 2.227089 ATCTGTCCCGTTCTGCCGAC 62.227 60.000 0.00 0.00 0.00 4.79
1826 1874 0.899253 TCTGCTCTGCTCTGCTCTGT 60.899 55.000 0.00 0.00 0.00 3.41
1876 1931 8.421784 TGGGTACTACTTAGCTTTCATCTATTG 58.578 37.037 0.00 0.00 0.00 1.90
2074 2182 6.332630 GCTTAATTTAGGCATCTGCTTTCAA 58.667 36.000 5.71 0.00 41.70 2.69
2166 2302 4.069312 TCCTATCTGTAGTTGGTTCCCA 57.931 45.455 0.00 0.00 0.00 4.37
2490 2645 6.582677 ATTCGACCCAATTATGTTTGTTGA 57.417 33.333 0.00 0.00 0.00 3.18
2510 2665 9.853555 TTGTTGAAGTTATATGTTTGCCATAAG 57.146 29.630 0.00 0.00 39.43 1.73
2582 2738 7.497925 AGAAACAGTGAGAAAATGTCCTAAC 57.502 36.000 0.00 0.00 0.00 2.34
2670 2826 7.280876 TGAGTTTGGATAAAGATATGCTGTCAC 59.719 37.037 0.00 0.00 31.61 3.67
2693 2849 9.801873 TCACTTTTGTTAAGATCTTTCAAAAGG 57.198 29.630 38.70 33.18 44.82 3.11
2809 2972 3.554934 TGTTGGAAAGAATGTGCTCAGT 58.445 40.909 0.00 0.00 0.00 3.41
2854 3017 2.605030 GCAAGCGCAATTGATACCAAA 58.395 42.857 11.47 0.00 38.36 3.28
2881 3044 6.666678 TGATTCTGCCCTTCTAATTTCTGAT 58.333 36.000 0.00 0.00 0.00 2.90
2937 3100 6.156256 TCTGAACCCTACTATTACAGTGCATT 59.844 38.462 0.00 0.00 38.24 3.56
2952 3115 5.104610 ACAGTGCATTCCATCTCTTATGAGT 60.105 40.000 5.60 0.00 40.98 3.41
2973 3136 5.522097 GAGTATGACTCAAAGCTTTCCTAGC 59.478 44.000 9.23 4.87 46.12 3.42
3009 3172 4.082125 ACTTTCCCTCTTAATGCACCAAG 58.918 43.478 0.00 0.00 0.00 3.61
3027 3190 3.624777 CAAGCCTTGGATGGAATAGTGT 58.375 45.455 0.00 0.00 0.00 3.55
3028 3191 4.780815 CAAGCCTTGGATGGAATAGTGTA 58.219 43.478 0.00 0.00 0.00 2.90
3030 3193 5.450818 AGCCTTGGATGGAATAGTGTAAA 57.549 39.130 0.00 0.00 0.00 2.01
3031 3194 5.826643 AGCCTTGGATGGAATAGTGTAAAA 58.173 37.500 0.00 0.00 0.00 1.52
3053 3216 7.707774 AAAAATTGTCTTACATTTTGGGACG 57.292 32.000 1.88 0.00 33.54 4.79
3054 3217 5.385509 AATTGTCTTACATTTTGGGACGG 57.614 39.130 0.00 0.00 0.00 4.79
3055 3218 3.773418 TGTCTTACATTTTGGGACGGA 57.227 42.857 0.00 0.00 0.00 4.69
3056 3219 3.670625 TGTCTTACATTTTGGGACGGAG 58.329 45.455 0.00 0.00 0.00 4.63
3095 3261 6.208402 TGGTTATTGAGCTTCTTTGCATGTAA 59.792 34.615 0.00 0.00 34.99 2.41
3097 3263 7.274250 GGTTATTGAGCTTCTTTGCATGTAAAG 59.726 37.037 25.24 25.24 38.67 1.85
3103 3269 8.194104 TGAGCTTCTTTGCATGTAAAGTTTTTA 58.806 29.630 28.29 11.99 38.49 1.52
3104 3270 8.940768 AGCTTCTTTGCATGTAAAGTTTTTAA 57.059 26.923 28.29 17.35 38.49 1.52
3105 3271 9.034544 AGCTTCTTTGCATGTAAAGTTTTTAAG 57.965 29.630 28.29 24.03 38.49 1.85
3106 3272 8.817100 GCTTCTTTGCATGTAAAGTTTTTAAGT 58.183 29.630 28.29 0.00 38.49 2.24
3109 3275 9.515020 TCTTTGCATGTAAAGTTTTTAAGTCTG 57.485 29.630 28.29 6.58 38.49 3.51
3112 3278 6.140110 GCATGTAAAGTTTTTAAGTCTGCGA 58.860 36.000 0.00 0.00 0.00 5.10
3113 3279 6.801862 GCATGTAAAGTTTTTAAGTCTGCGAT 59.198 34.615 0.00 0.00 0.00 4.58
3127 3294 4.872691 AGTCTGCGATTTCATAAGTCTTGG 59.127 41.667 0.00 0.00 0.00 3.61
3142 3309 5.990120 AGTCTTGGAAAAATAGCTTGCAT 57.010 34.783 0.00 0.00 0.00 3.96
3143 3310 6.350629 AGTCTTGGAAAAATAGCTTGCATT 57.649 33.333 0.00 0.00 0.00 3.56
3144 3311 6.161381 AGTCTTGGAAAAATAGCTTGCATTG 58.839 36.000 0.00 0.00 0.00 2.82
3145 3312 4.931002 TCTTGGAAAAATAGCTTGCATTGC 59.069 37.500 0.46 0.46 0.00 3.56
3158 3325 1.341778 TGCATTGCATCCATGGTGGTA 60.342 47.619 12.58 1.65 34.20 3.25
3167 3334 4.460382 GCATCCATGGTGGTATAGGATTTG 59.540 45.833 12.58 0.00 39.03 2.32
3182 3349 3.264450 AGGATTTGTAGTGCTACTTGCCT 59.736 43.478 10.28 8.59 42.00 4.75
3214 3381 3.244596 GGTAGGATCAAGATAGTTGCCCC 60.245 52.174 0.00 0.00 0.00 5.80
3227 3394 0.758685 TTGCCCCAACCTCCAAAGTG 60.759 55.000 0.00 0.00 0.00 3.16
3277 3448 4.342092 ACTTCCTTTGAAACTTGGGATGTG 59.658 41.667 0.00 0.00 34.60 3.21
3366 3538 9.891828 TGTTGCTTGTATTTTACAGATTTGTAG 57.108 29.630 0.00 0.00 40.68 2.74
3410 3744 3.934579 CTGCAAAAGCTTTGGTTTCTGTT 59.065 39.130 13.54 0.00 31.82 3.16
3413 3747 4.391523 GCAAAAGCTTTGGTTTCTGTTCAA 59.608 37.500 13.54 0.00 31.82 2.69
3415 3749 6.403527 GCAAAAGCTTTGGTTTCTGTTCAAAT 60.404 34.615 13.54 0.00 31.82 2.32
3453 3787 7.332926 CCAGTAATGCTAACCTGTATCATGATC 59.667 40.741 12.53 4.90 0.00 2.92
3511 3846 8.625467 ATTAAGAACTCTATGGTAGGTTTCCT 57.375 34.615 0.00 0.00 37.71 3.36
3603 3939 4.876107 CGCAGTGGAGATAAAGGTACATTT 59.124 41.667 10.70 10.70 0.00 2.32
3612 3948 7.201741 GGAGATAAAGGTACATTTGAAGCTTCC 60.202 40.741 23.42 6.23 32.53 3.46
3694 4045 3.367292 CCAAATGTGGGTTTCTTCCATCG 60.367 47.826 0.00 0.00 41.77 3.84
3789 4140 0.250038 CATCAGGGGCAGGTATGTCG 60.250 60.000 0.00 0.00 0.00 4.35
3790 4141 1.410850 ATCAGGGGCAGGTATGTCGG 61.411 60.000 0.00 0.00 0.00 4.79
3804 4155 6.594159 CAGGTATGTCGGTCTTAACAGATTTT 59.406 38.462 0.00 0.00 32.12 1.82
3880 4231 5.353394 TGTCCACTGAAAGACAAAGTAGT 57.647 39.130 0.00 0.00 39.96 2.73
3881 4232 5.741011 TGTCCACTGAAAGACAAAGTAGTT 58.259 37.500 0.00 0.00 39.96 2.24
3972 4324 1.555967 TTAAGCATTCAGGGTTGCCC 58.444 50.000 0.00 0.00 45.90 5.36
4077 4430 8.858003 TTCAGATATCGAAGACAAGTGAATAC 57.142 34.615 0.00 0.00 42.51 1.89
4080 4433 7.805542 CAGATATCGAAGACAAGTGAATACGAT 59.194 37.037 0.00 0.00 42.51 3.73
4083 4436 4.398358 TCGAAGACAAGTGAATACGATCCT 59.602 41.667 0.00 0.00 0.00 3.24
4296 4649 7.439655 GGGCTACAACTATCTGACTTTATTGAG 59.560 40.741 0.00 0.00 0.00 3.02
4383 4736 0.250038 ATCATGACATCGAAGGGGCG 60.250 55.000 0.00 0.00 0.00 6.13
4399 4752 2.993899 GGGGCGATTCATCTGTATTACG 59.006 50.000 0.00 0.00 0.00 3.18
4506 4859 5.483937 TCCTTTGGACAAGAGCTGTAAGATA 59.516 40.000 0.00 0.00 38.84 1.98
4509 4862 5.584253 TGGACAAGAGCTGTAAGATAGTC 57.416 43.478 0.00 0.00 38.84 2.59
4533 4886 5.586643 CAGGGACTTTCTTATTTCTGCTACC 59.413 44.000 0.00 0.00 34.60 3.18
4536 4889 3.617263 ACTTTCTTATTTCTGCTACCGCG 59.383 43.478 0.00 0.00 39.65 6.46
4570 4923 0.179156 CATGATGTGCTTTCGGCCAC 60.179 55.000 2.24 0.00 40.92 5.01
4591 4944 3.438781 ACGAGAGTGTGAGAGAACAGATC 59.561 47.826 0.00 0.00 46.97 2.75
4593 4946 4.016444 GAGAGTGTGAGAGAACAGATCCT 58.984 47.826 0.00 0.00 0.00 3.24
4608 4961 6.159299 ACAGATCCTGAGTATGATTCAGTG 57.841 41.667 0.45 0.00 40.32 3.66
4614 4967 7.009179 TCCTGAGTATGATTCAGTGTTTCTT 57.991 36.000 2.05 0.00 40.32 2.52
4630 4983 3.812156 TTCTTCAGTCAGTGAACCGAA 57.188 42.857 0.00 0.00 40.45 4.30
4691 5044 7.458397 TCCTGTTACCTTCATCTTGTATTTGT 58.542 34.615 0.00 0.00 0.00 2.83
4701 5054 6.902341 TCATCTTGTATTTGTTCAGCAACTC 58.098 36.000 0.00 0.00 36.72 3.01
4702 5055 6.486320 TCATCTTGTATTTGTTCAGCAACTCA 59.514 34.615 0.00 0.00 36.72 3.41
4715 5068 7.545615 TGTTCAGCAACTCATGTACTTGTATAG 59.454 37.037 8.46 2.28 33.17 1.31
4718 5071 7.759886 TCAGCAACTCATGTACTTGTATAGTTC 59.240 37.037 8.46 6.13 38.33 3.01
4761 5114 5.636837 GGCTTATGCGTTTCTTTTATGTGA 58.363 37.500 0.00 0.00 40.82 3.58
4787 5143 3.152983 CGTTTGCACGTGAATGACATAC 58.847 45.455 22.23 11.16 41.84 2.39
4997 5368 1.072331 TCAACTTGAAGCCTCTGGACC 59.928 52.381 0.00 0.00 0.00 4.46
5142 5513 1.132262 CGGTCACTGCTGTTTGTTGTT 59.868 47.619 0.00 0.00 0.00 2.83
5160 5531 5.235616 TGTTGTTGCTGTTACTGTAGCTTAC 59.764 40.000 0.00 2.67 40.52 2.34
5209 5580 2.950172 GCTCGTCGCGGCAGAAAAA 61.950 57.895 12.89 0.00 0.00 1.94
5307 5678 2.203181 GCAGCAGAGATGGGAGCC 60.203 66.667 0.00 0.00 0.00 4.70
5357 5728 1.279271 CATTTCACCGGTTCCCTCTCT 59.721 52.381 2.97 0.00 0.00 3.10
5364 5735 1.608717 CGGTTCCCTCTCTCACCTGG 61.609 65.000 0.00 0.00 0.00 4.45
5417 5924 0.661483 GTTTGCGGTTGCTTCTCTGC 60.661 55.000 0.00 0.00 43.34 4.26
5438 5945 4.216257 TGCTCTCAGTTGCTTATTGTTTCC 59.784 41.667 0.00 0.00 0.00 3.13
5510 6017 4.461431 TGTAGCACCTGAATTCTAGAACGA 59.539 41.667 7.48 0.00 0.00 3.85
5598 6114 6.795144 ATTATCCCAATGAACTTCATGCAA 57.205 33.333 4.99 0.00 37.15 4.08
5600 6116 4.255833 TCCCAATGAACTTCATGCAAAC 57.744 40.909 4.99 0.00 37.15 2.93
5609 6125 4.164822 ACTTCATGCAAACGATCCAAAG 57.835 40.909 0.00 0.00 0.00 2.77
5621 6138 3.826157 ACGATCCAAAGCCATTTTTGAGA 59.174 39.130 0.00 0.00 39.79 3.27
5624 6141 3.303938 TCCAAAGCCATTTTTGAGACCA 58.696 40.909 0.37 0.00 39.79 4.02
5626 6143 4.347583 TCCAAAGCCATTTTTGAGACCAAT 59.652 37.500 0.37 0.00 39.79 3.16
5640 6157 0.827507 ACCAATGAGTTGTGTGCCCC 60.828 55.000 0.00 0.00 33.36 5.80
5654 6171 2.224818 TGTGCCCCGGTTATTTTGTACT 60.225 45.455 0.00 0.00 0.00 2.73
5655 6172 3.008813 TGTGCCCCGGTTATTTTGTACTA 59.991 43.478 0.00 0.00 0.00 1.82
5656 6173 3.374988 GTGCCCCGGTTATTTTGTACTAC 59.625 47.826 0.00 0.00 0.00 2.73
5657 6174 3.008813 TGCCCCGGTTATTTTGTACTACA 59.991 43.478 0.00 0.00 0.00 2.74
5658 6175 4.009002 GCCCCGGTTATTTTGTACTACAA 58.991 43.478 0.00 0.00 36.11 2.41
5675 6192 9.594478 TGTACTACAATTTGTACCATATCACAG 57.406 33.333 5.14 0.00 38.48 3.66
5701 6218 3.744426 CACCGGTTACAAGACCAGTTTAG 59.256 47.826 2.97 0.00 39.78 1.85
5702 6219 3.244318 ACCGGTTACAAGACCAGTTTAGG 60.244 47.826 0.00 0.00 39.78 2.69
5704 6221 3.079578 GGTTACAAGACCAGTTTAGGCC 58.920 50.000 0.00 0.00 39.57 5.19
5705 6222 3.079578 GTTACAAGACCAGTTTAGGCCC 58.920 50.000 0.00 0.00 0.00 5.80
5706 6223 1.145571 ACAAGACCAGTTTAGGCCCA 58.854 50.000 0.00 0.00 0.00 5.36
5707 6224 1.073923 ACAAGACCAGTTTAGGCCCAG 59.926 52.381 0.00 0.00 0.00 4.45
5708 6225 1.073923 CAAGACCAGTTTAGGCCCAGT 59.926 52.381 0.00 0.00 0.00 4.00
5709 6226 1.446016 AGACCAGTTTAGGCCCAGTT 58.554 50.000 0.00 0.00 0.00 3.16
5710 6227 1.351350 AGACCAGTTTAGGCCCAGTTC 59.649 52.381 0.00 0.00 0.00 3.01
5712 6229 1.780919 ACCAGTTTAGGCCCAGTTCTT 59.219 47.619 0.00 0.00 0.00 2.52
5713 6230 2.177016 ACCAGTTTAGGCCCAGTTCTTT 59.823 45.455 0.00 0.00 0.00 2.52
5714 6231 3.230976 CCAGTTTAGGCCCAGTTCTTTT 58.769 45.455 0.00 0.00 0.00 2.27
5715 6232 3.005791 CCAGTTTAGGCCCAGTTCTTTTG 59.994 47.826 0.00 0.00 0.00 2.44
5716 6233 2.628178 AGTTTAGGCCCAGTTCTTTTGC 59.372 45.455 0.00 0.00 0.00 3.68
5717 6234 2.628178 GTTTAGGCCCAGTTCTTTTGCT 59.372 45.455 0.00 0.00 0.00 3.91
5718 6235 3.799432 TTAGGCCCAGTTCTTTTGCTA 57.201 42.857 0.00 0.00 0.00 3.49
5719 6236 2.206576 AGGCCCAGTTCTTTTGCTAG 57.793 50.000 0.00 0.00 0.00 3.42
5720 6237 1.705186 AGGCCCAGTTCTTTTGCTAGA 59.295 47.619 0.00 0.00 0.00 2.43
5721 6238 2.108250 AGGCCCAGTTCTTTTGCTAGAA 59.892 45.455 0.00 0.00 0.00 2.10
5722 6239 3.092301 GGCCCAGTTCTTTTGCTAGAAT 58.908 45.455 0.00 0.00 36.60 2.40
5723 6240 3.129462 GGCCCAGTTCTTTTGCTAGAATC 59.871 47.826 0.00 0.00 36.60 2.52
5724 6241 4.013050 GCCCAGTTCTTTTGCTAGAATCT 58.987 43.478 0.00 0.00 36.60 2.40
5725 6242 4.142513 GCCCAGTTCTTTTGCTAGAATCTG 60.143 45.833 0.00 0.00 36.60 2.90
5726 6243 4.397417 CCCAGTTCTTTTGCTAGAATCTGG 59.603 45.833 21.34 21.34 43.61 3.86
5728 6245 4.397417 CAGTTCTTTTGCTAGAATCTGGGG 59.603 45.833 0.00 0.00 36.60 4.96
5729 6246 4.289672 AGTTCTTTTGCTAGAATCTGGGGA 59.710 41.667 0.00 0.00 36.60 4.81
5730 6247 5.044550 AGTTCTTTTGCTAGAATCTGGGGAT 60.045 40.000 0.00 0.00 36.60 3.85
5731 6248 5.456921 TCTTTTGCTAGAATCTGGGGATT 57.543 39.130 0.00 0.00 43.99 3.01
5749 6266 0.909623 TTCTTCCAGAATCCGACCCC 59.090 55.000 0.00 0.00 0.00 4.95
5750 6267 0.042731 TCTTCCAGAATCCGACCCCT 59.957 55.000 0.00 0.00 0.00 4.79
5751 6268 1.289830 TCTTCCAGAATCCGACCCCTA 59.710 52.381 0.00 0.00 0.00 3.53
5753 6270 0.398098 TCCAGAATCCGACCCCTACC 60.398 60.000 0.00 0.00 0.00 3.18
5754 6271 1.408453 CCAGAATCCGACCCCTACCC 61.408 65.000 0.00 0.00 0.00 3.69
5755 6272 0.689745 CAGAATCCGACCCCTACCCA 60.690 60.000 0.00 0.00 0.00 4.51
5758 6275 2.547123 AATCCGACCCCTACCCAGCT 62.547 60.000 0.00 0.00 0.00 4.24
5759 6276 2.547123 ATCCGACCCCTACCCAGCTT 62.547 60.000 0.00 0.00 0.00 3.74
5761 6278 2.732619 CGACCCCTACCCAGCTTCC 61.733 68.421 0.00 0.00 0.00 3.46
5762 6279 2.286197 ACCCCTACCCAGCTTCCC 60.286 66.667 0.00 0.00 0.00 3.97
5763 6280 2.042930 CCCCTACCCAGCTTCCCT 59.957 66.667 0.00 0.00 0.00 4.20
5764 6281 2.073101 CCCCTACCCAGCTTCCCTC 61.073 68.421 0.00 0.00 0.00 4.30
5766 6283 0.695803 CCCTACCCAGCTTCCCTCAT 60.696 60.000 0.00 0.00 0.00 2.90
5768 6285 2.408565 CCTACCCAGCTTCCCTCATAA 58.591 52.381 0.00 0.00 0.00 1.90
5769 6286 2.982488 CCTACCCAGCTTCCCTCATAAT 59.018 50.000 0.00 0.00 0.00 1.28
5770 6287 3.008485 CCTACCCAGCTTCCCTCATAATC 59.992 52.174 0.00 0.00 0.00 1.75
5772 6289 3.126453 ACCCAGCTTCCCTCATAATCTT 58.874 45.455 0.00 0.00 0.00 2.40
5774 6291 3.887716 CCCAGCTTCCCTCATAATCTTTG 59.112 47.826 0.00 0.00 0.00 2.77
5778 6295 3.567585 GCTTCCCTCATAATCTTTGAGCC 59.432 47.826 0.00 0.00 39.42 4.70
5780 6297 2.443255 TCCCTCATAATCTTTGAGCCCC 59.557 50.000 0.00 0.00 39.42 5.80
5781 6298 2.175499 CCCTCATAATCTTTGAGCCCCA 59.825 50.000 0.00 0.00 39.42 4.96
5782 6299 3.181425 CCCTCATAATCTTTGAGCCCCAT 60.181 47.826 0.00 0.00 39.42 4.00
5786 6303 5.271598 TCATAATCTTTGAGCCCCATTTGT 58.728 37.500 0.00 0.00 0.00 2.83
5787 6304 5.721000 TCATAATCTTTGAGCCCCATTTGTT 59.279 36.000 0.00 0.00 0.00 2.83
5788 6305 4.980339 AATCTTTGAGCCCCATTTGTTT 57.020 36.364 0.00 0.00 0.00 2.83
5789 6306 4.980339 ATCTTTGAGCCCCATTTGTTTT 57.020 36.364 0.00 0.00 0.00 2.43
5791 6308 5.208463 TCTTTGAGCCCCATTTGTTTTAC 57.792 39.130 0.00 0.00 0.00 2.01
5792 6309 4.651503 TCTTTGAGCCCCATTTGTTTTACA 59.348 37.500 0.00 0.00 0.00 2.41
5793 6310 5.129485 TCTTTGAGCCCCATTTGTTTTACAA 59.871 36.000 0.00 0.00 36.11 2.41
5797 6314 4.167319 AGCCCCATTTGTTTTACAATCCT 58.833 39.130 0.00 0.00 38.00 3.24
5798 6315 4.020307 AGCCCCATTTGTTTTACAATCCTG 60.020 41.667 0.00 0.00 38.00 3.86
5800 6317 5.478407 CCCCATTTGTTTTACAATCCTGTC 58.522 41.667 0.00 0.00 38.00 3.51
5802 6319 6.435904 CCCCATTTGTTTTACAATCCTGTCTA 59.564 38.462 0.00 0.00 38.00 2.59
5803 6320 7.039363 CCCCATTTGTTTTACAATCCTGTCTAA 60.039 37.037 0.00 0.00 38.00 2.10
5804 6321 8.531146 CCCATTTGTTTTACAATCCTGTCTAAT 58.469 33.333 0.00 0.00 38.00 1.73
5805 6322 9.927668 CCATTTGTTTTACAATCCTGTCTAATT 57.072 29.630 0.00 0.00 38.00 1.40
5828 6345 9.900112 AATTAGACCCTAACTAGATAGGATTGT 57.100 33.333 23.97 14.76 44.46 2.71
5832 6349 9.725206 AGACCCTAACTAGATAGGATTGTAAAA 57.275 33.333 23.97 0.00 44.46 1.52
5833 6350 9.761504 GACCCTAACTAGATAGGATTGTAAAAC 57.238 37.037 23.97 2.40 44.46 2.43
5834 6351 9.275572 ACCCTAACTAGATAGGATTGTAAAACA 57.724 33.333 23.97 0.00 44.46 2.83
5840 6357 9.408648 ACTAGATAGGATTGTAAAACAAATGGG 57.591 33.333 0.00 0.00 41.96 4.00
5841 6358 7.660030 AGATAGGATTGTAAAACAAATGGGG 57.340 36.000 0.00 0.00 41.96 4.96
5842 6359 4.551702 AGGATTGTAAAACAAATGGGGC 57.448 40.909 0.00 0.00 41.96 5.80
5845 6362 4.020662 GGATTGTAAAACAAATGGGGCTCA 60.021 41.667 0.00 0.00 41.96 4.26
5846 6363 5.512232 GGATTGTAAAACAAATGGGGCTCAA 60.512 40.000 0.00 0.00 41.96 3.02
5848 6365 4.954875 TGTAAAACAAATGGGGCTCAAAG 58.045 39.130 0.00 0.00 0.00 2.77
5849 6366 4.651503 TGTAAAACAAATGGGGCTCAAAGA 59.348 37.500 0.00 0.00 0.00 2.52
5850 6367 4.980339 AAAACAAATGGGGCTCAAAGAT 57.020 36.364 0.00 0.00 0.00 2.40
5852 6369 4.541973 AACAAATGGGGCTCAAAGATTC 57.458 40.909 0.00 0.00 0.00 2.52
5854 6371 3.512724 ACAAATGGGGCTCAAAGATTCTG 59.487 43.478 0.00 0.00 0.00 3.02
5856 6373 1.371467 TGGGGCTCAAAGATTCTGGA 58.629 50.000 0.00 0.00 0.00 3.86
5857 6374 1.710244 TGGGGCTCAAAGATTCTGGAA 59.290 47.619 0.00 0.00 0.00 3.53
5870 6387 1.573108 TCTGGAAGAAGCTGGGTAGG 58.427 55.000 0.00 0.00 42.31 3.18
5871 6388 0.543749 CTGGAAGAAGCTGGGTAGGG 59.456 60.000 0.00 0.00 34.07 3.53
5872 6389 0.914417 TGGAAGAAGCTGGGTAGGGG 60.914 60.000 0.00 0.00 0.00 4.79
5873 6390 0.914902 GGAAGAAGCTGGGTAGGGGT 60.915 60.000 0.00 0.00 0.00 4.95
5874 6391 0.542333 GAAGAAGCTGGGTAGGGGTC 59.458 60.000 0.00 0.00 0.00 4.46
5875 6392 1.265454 AAGAAGCTGGGTAGGGGTCG 61.265 60.000 0.00 0.00 0.00 4.79
5878 6395 2.446036 GCTGGGTAGGGGTCGGAT 60.446 66.667 0.00 0.00 0.00 4.18
5879 6396 2.070650 GCTGGGTAGGGGTCGGATT 61.071 63.158 0.00 0.00 0.00 3.01
5880 6397 1.632965 GCTGGGTAGGGGTCGGATTT 61.633 60.000 0.00 0.00 0.00 2.17
5881 6398 0.916809 CTGGGTAGGGGTCGGATTTT 59.083 55.000 0.00 0.00 0.00 1.82
5882 6399 0.621609 TGGGTAGGGGTCGGATTTTG 59.378 55.000 0.00 0.00 0.00 2.44
5887 6404 1.137594 AGGGGTCGGATTTTGGGACA 61.138 55.000 0.00 0.00 32.39 4.02
5913 6430 4.170292 CCAGATTCTGGCAAAAGAACTG 57.830 45.455 19.49 12.95 45.13 3.16
5914 6431 3.057033 CCAGATTCTGGCAAAAGAACTGG 60.057 47.826 19.49 18.64 45.13 4.00
5915 6432 3.057033 CAGATTCTGGCAAAAGAACTGGG 60.057 47.826 5.73 0.00 38.95 4.45
5916 6433 1.039856 TTCTGGCAAAAGAACTGGGC 58.960 50.000 0.00 0.00 31.19 5.36
5918 6435 0.829182 CTGGCAAAAGAACTGGGCCT 60.829 55.000 4.53 0.00 44.85 5.19
5919 6436 0.398381 TGGCAAAAGAACTGGGCCTT 60.398 50.000 4.53 0.00 44.85 4.35
5920 6437 1.133325 TGGCAAAAGAACTGGGCCTTA 60.133 47.619 4.53 0.00 44.85 2.69
5921 6438 2.179427 GGCAAAAGAACTGGGCCTTAT 58.821 47.619 4.53 0.00 41.39 1.73
5923 6440 3.130516 GGCAAAAGAACTGGGCCTTATAC 59.869 47.826 4.53 0.00 41.39 1.47
5924 6441 3.181500 GCAAAAGAACTGGGCCTTATACG 60.181 47.826 4.53 0.00 0.00 3.06
5933 6450 1.949257 GCCTTATACGGCCATGTGC 59.051 57.895 9.08 0.00 44.41 4.57
5934 6451 0.817634 GCCTTATACGGCCATGTGCA 60.818 55.000 9.08 0.00 44.41 4.57
5937 6454 1.002468 CTTATACGGCCATGTGCAAGC 60.002 52.381 2.24 0.00 43.89 4.01
5944 6461 4.902308 CATGTGCAAGCCATGGTG 57.098 55.556 14.67 5.73 36.81 4.17
5945 6462 1.447140 CATGTGCAAGCCATGGTGC 60.447 57.895 18.16 18.16 41.29 5.01
5947 6464 0.323633 ATGTGCAAGCCATGGTGCTA 60.324 50.000 23.49 15.02 41.80 3.49
5951 6468 0.950116 GCAAGCCATGGTGCTATCTC 59.050 55.000 17.81 0.00 41.80 2.75
5952 6469 1.476471 GCAAGCCATGGTGCTATCTCT 60.476 52.381 17.81 0.00 41.80 3.10
5954 6471 2.877168 CAAGCCATGGTGCTATCTCTTC 59.123 50.000 14.67 0.00 41.80 2.87
5955 6472 2.121948 AGCCATGGTGCTATCTCTTCA 58.878 47.619 14.67 0.00 40.56 3.02
5956 6473 2.104451 AGCCATGGTGCTATCTCTTCAG 59.896 50.000 14.67 0.00 40.56 3.02
5958 6475 3.244491 GCCATGGTGCTATCTCTTCAGAT 60.244 47.826 14.67 0.00 42.48 2.90
5959 6476 4.020751 GCCATGGTGCTATCTCTTCAGATA 60.021 45.833 14.67 0.00 40.18 1.98
5961 6478 5.477510 CATGGTGCTATCTCTTCAGATACC 58.522 45.833 0.00 0.00 40.18 2.73
5962 6479 4.809193 TGGTGCTATCTCTTCAGATACCT 58.191 43.478 0.00 0.00 40.18 3.08
5963 6480 5.211973 TGGTGCTATCTCTTCAGATACCTT 58.788 41.667 0.00 0.00 40.18 3.50
5965 6482 6.156949 TGGTGCTATCTCTTCAGATACCTTTT 59.843 38.462 0.00 0.00 40.18 2.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 0.239347 GAGGTTGCACATCACAGCAC 59.761 55.000 0.00 0.00 41.05 4.40
43 44 2.584791 CACAGCAAAATACGAGGTTGC 58.415 47.619 8.94 8.94 46.35 4.17
68 69 4.904241 AGCTTGGATGGATAGCTTGATAC 58.096 43.478 0.00 0.00 42.30 2.24
110 111 2.011617 AAGCAGGCAACCCTCCAGTT 62.012 55.000 0.00 0.00 40.33 3.16
118 120 4.002797 CCTACCAAGCAGGCAACC 57.997 61.111 0.00 0.00 43.14 3.77
155 157 5.904750 ACAAAGTTATCCATTGGCCCAATAT 59.095 36.000 9.03 2.70 32.35 1.28
183 186 9.562583 GAAACTGTACTACAATAGAGTTCAGAG 57.437 37.037 14.03 0.00 42.03 3.35
236 239 4.766404 ACAAAGAGAAGTAAAATGCCGG 57.234 40.909 0.00 0.00 0.00 6.13
265 268 4.126437 TCCCACAATGTTACATATCGCAG 58.874 43.478 0.00 0.00 0.00 5.18
266 269 4.126437 CTCCCACAATGTTACATATCGCA 58.874 43.478 0.00 0.00 0.00 5.10
267 270 3.498397 CCTCCCACAATGTTACATATCGC 59.502 47.826 0.00 0.00 0.00 4.58
268 271 4.703897 ACCTCCCACAATGTTACATATCG 58.296 43.478 0.00 0.00 0.00 2.92
269 272 6.827727 ACTACCTCCCACAATGTTACATATC 58.172 40.000 0.00 0.00 0.00 1.63
270 273 6.824958 ACTACCTCCCACAATGTTACATAT 57.175 37.500 0.00 0.00 0.00 1.78
289 292 2.088950 TTTCTGGCCGCTACAACTAC 57.911 50.000 0.00 0.00 0.00 2.73
309 312 5.265191 TGTTCTGCTCTTACAGGATCTACT 58.735 41.667 0.00 0.00 38.26 2.57
357 360 2.300437 AGAGCTGTACTGGGTGAGAAAC 59.700 50.000 0.00 0.00 0.00 2.78
414 422 7.948357 TCAAAATATATATAGGGATCCCGTCG 58.052 38.462 25.48 3.51 41.95 5.12
564 574 0.813184 AGAATGCCAACAGCCGAATG 59.187 50.000 0.00 0.00 42.71 2.67
612 622 3.998341 GGTACCATCGCTAAAACAACTGA 59.002 43.478 7.15 0.00 0.00 3.41
645 655 8.265998 CCTTGCGACAAAAACTTAAAATAACAG 58.734 33.333 0.00 0.00 0.00 3.16
689 702 4.202202 ACTGCACAAAATTCGGAATCCAAA 60.202 37.500 3.28 0.00 0.00 3.28
707 720 2.938451 CTCAACTCACAAGTGAACTGCA 59.062 45.455 4.29 0.00 39.39 4.41
716 729 0.588252 CAACCGCCTCAACTCACAAG 59.412 55.000 0.00 0.00 0.00 3.16
726 739 1.739067 AAGATTACAGCAACCGCCTC 58.261 50.000 0.00 0.00 39.83 4.70
729 742 1.068610 TGCAAAGATTACAGCAACCGC 60.069 47.619 0.00 0.00 33.48 5.68
734 747 2.076100 CGACCTGCAAAGATTACAGCA 58.924 47.619 0.00 0.00 35.43 4.41
746 759 9.535878 AAATTTTCTAAAAATTTACGACCTGCA 57.464 25.926 17.17 0.00 37.87 4.41
819 832 7.584122 TCTTATATTACAAGGCGAAGAGACT 57.416 36.000 0.00 0.00 42.73 3.24
821 834 6.448006 GCTCTTATATTACAAGGCGAAGAGA 58.552 40.000 11.81 0.00 40.44 3.10
822 835 5.343593 CGCTCTTATATTACAAGGCGAAGAG 59.656 44.000 10.23 0.00 41.26 2.85
823 836 5.220381 CGCTCTTATATTACAAGGCGAAGA 58.780 41.667 10.23 0.00 41.26 2.87
825 838 4.940463 ACGCTCTTATATTACAAGGCGAA 58.060 39.130 18.13 0.00 41.26 4.70
826 839 4.579454 ACGCTCTTATATTACAAGGCGA 57.421 40.909 18.13 0.00 41.26 5.54
827 840 5.652744 AAACGCTCTTATATTACAAGGCG 57.347 39.130 12.78 12.78 42.81 5.52
828 841 7.469260 TGAAAAACGCTCTTATATTACAAGGC 58.531 34.615 0.00 0.00 0.00 4.35
836 849 9.694137 GTCCTAGTATGAAAAACGCTCTTATAT 57.306 33.333 0.00 0.00 0.00 0.86
837 850 8.689061 TGTCCTAGTATGAAAAACGCTCTTATA 58.311 33.333 0.00 0.00 0.00 0.98
838 851 7.553334 TGTCCTAGTATGAAAAACGCTCTTAT 58.447 34.615 0.00 0.00 0.00 1.73
839 852 6.927416 TGTCCTAGTATGAAAAACGCTCTTA 58.073 36.000 0.00 0.00 0.00 2.10
840 853 5.790593 TGTCCTAGTATGAAAAACGCTCTT 58.209 37.500 0.00 0.00 0.00 2.85
841 854 5.047235 ACTGTCCTAGTATGAAAAACGCTCT 60.047 40.000 0.00 0.00 38.04 4.09
842 855 5.169295 ACTGTCCTAGTATGAAAAACGCTC 58.831 41.667 0.00 0.00 38.04 5.03
843 856 5.148651 ACTGTCCTAGTATGAAAAACGCT 57.851 39.130 0.00 0.00 38.04 5.07
844 857 5.005490 GCTACTGTCCTAGTATGAAAAACGC 59.995 44.000 0.00 0.00 40.94 4.84
845 858 6.034683 GTGCTACTGTCCTAGTATGAAAAACG 59.965 42.308 0.00 0.00 40.94 3.60
846 859 6.872020 TGTGCTACTGTCCTAGTATGAAAAAC 59.128 38.462 0.00 0.00 40.94 2.43
847 860 6.872020 GTGTGCTACTGTCCTAGTATGAAAAA 59.128 38.462 0.00 0.00 40.94 1.94
848 861 6.014925 TGTGTGCTACTGTCCTAGTATGAAAA 60.015 38.462 0.00 0.00 40.94 2.29
849 862 5.479027 TGTGTGCTACTGTCCTAGTATGAAA 59.521 40.000 0.00 0.00 40.94 2.69
850 863 5.014202 TGTGTGCTACTGTCCTAGTATGAA 58.986 41.667 0.00 0.00 40.94 2.57
851 864 4.595986 TGTGTGCTACTGTCCTAGTATGA 58.404 43.478 0.00 0.00 40.94 2.15
852 865 4.983671 TGTGTGCTACTGTCCTAGTATG 57.016 45.455 0.00 0.00 40.94 2.39
853 866 4.142138 GCTTGTGTGCTACTGTCCTAGTAT 60.142 45.833 0.00 0.00 40.94 2.12
854 867 3.192844 GCTTGTGTGCTACTGTCCTAGTA 59.807 47.826 0.00 0.00 40.89 1.82
855 868 2.028930 GCTTGTGTGCTACTGTCCTAGT 60.029 50.000 0.00 0.00 43.56 2.57
856 869 2.029020 TGCTTGTGTGCTACTGTCCTAG 60.029 50.000 0.00 0.00 0.00 3.02
857 870 1.967779 TGCTTGTGTGCTACTGTCCTA 59.032 47.619 0.00 0.00 0.00 2.94
858 871 0.758734 TGCTTGTGTGCTACTGTCCT 59.241 50.000 0.00 0.00 0.00 3.85
859 872 0.868406 GTGCTTGTGTGCTACTGTCC 59.132 55.000 0.00 0.00 0.00 4.02
860 873 1.261619 GTGTGCTTGTGTGCTACTGTC 59.738 52.381 0.00 0.00 0.00 3.51
861 874 1.299541 GTGTGCTTGTGTGCTACTGT 58.700 50.000 0.00 0.00 0.00 3.55
862 875 1.298602 TGTGTGCTTGTGTGCTACTG 58.701 50.000 0.00 0.00 0.00 2.74
863 876 2.036958 TTGTGTGCTTGTGTGCTACT 57.963 45.000 0.00 0.00 0.00 2.57
864 877 3.354089 AATTGTGTGCTTGTGTGCTAC 57.646 42.857 0.00 0.00 0.00 3.58
865 878 4.383850 AAAATTGTGTGCTTGTGTGCTA 57.616 36.364 0.00 0.00 0.00 3.49
866 879 2.965572 AAATTGTGTGCTTGTGTGCT 57.034 40.000 0.00 0.00 0.00 4.40
867 880 4.744137 TGATAAAATTGTGTGCTTGTGTGC 59.256 37.500 0.00 0.00 0.00 4.57
868 881 6.825284 TTGATAAAATTGTGTGCTTGTGTG 57.175 33.333 0.00 0.00 0.00 3.82
869 882 8.436046 AATTTGATAAAATTGTGTGCTTGTGT 57.564 26.923 0.00 0.00 31.68 3.72
870 883 8.011106 GGAATTTGATAAAATTGTGTGCTTGTG 58.989 33.333 5.44 0.00 32.92 3.33
871 884 7.095691 CGGAATTTGATAAAATTGTGTGCTTGT 60.096 33.333 5.44 0.00 32.92 3.16
872 885 7.228840 CGGAATTTGATAAAATTGTGTGCTTG 58.771 34.615 5.44 0.00 32.92 4.01
873 886 6.368516 CCGGAATTTGATAAAATTGTGTGCTT 59.631 34.615 5.44 0.00 32.92 3.91
874 887 5.868801 CCGGAATTTGATAAAATTGTGTGCT 59.131 36.000 5.44 0.00 32.92 4.40
875 888 5.637387 ACCGGAATTTGATAAAATTGTGTGC 59.363 36.000 9.46 0.00 32.92 4.57
876 889 8.749841 TTACCGGAATTTGATAAAATTGTGTG 57.250 30.769 9.46 0.00 32.92 3.82
877 890 9.936759 ATTTACCGGAATTTGATAAAATTGTGT 57.063 25.926 9.46 3.09 32.92 3.72
911 924 2.474526 CGCATCAACACGTCTTTCATCC 60.475 50.000 0.00 0.00 0.00 3.51
952 965 2.897641 CTACCTGCGCTCAGTGCTCC 62.898 65.000 12.40 0.00 40.03 4.70
953 966 1.518133 CTACCTGCGCTCAGTGCTC 60.518 63.158 12.40 0.00 40.03 4.26
954 967 2.575993 CTACCTGCGCTCAGTGCT 59.424 61.111 12.40 0.00 40.03 4.40
962 975 4.778143 CACCCCACCTACCTGCGC 62.778 72.222 0.00 0.00 0.00 6.09
1003 1016 2.504026 TCGCGCGTGATCTGTGAC 60.504 61.111 30.98 0.00 0.00 3.67
1017 1030 1.438651 TGGTAGCATCAACTTGTCGC 58.561 50.000 0.00 0.00 0.00 5.19
1048 1066 0.537371 TCCAGTGAGACAGACAGCGA 60.537 55.000 0.00 0.00 0.00 4.93
1209 1235 2.431430 CTCGCTCGTGCTGCTGAA 60.431 61.111 7.97 0.00 36.97 3.02
1382 1424 0.741915 GAGAGGAGAAGTGTAGGCGG 59.258 60.000 0.00 0.00 0.00 6.13
1473 1516 2.224885 CGCGCGAGAGAAGCTAACC 61.225 63.158 28.94 0.00 34.81 2.85
1475 1518 1.514228 CACGCGCGAGAGAAGCTAA 60.514 57.895 39.36 0.00 34.81 3.09
1577 1620 1.596934 GGCAGAACGGGACAGATGA 59.403 57.895 0.00 0.00 0.00 2.92
1608 1651 2.636412 GCAGTCGGAAAAAGCCCCC 61.636 63.158 0.00 0.00 0.00 5.40
1609 1652 2.636412 GGCAGTCGGAAAAAGCCCC 61.636 63.158 0.00 0.00 39.42 5.80
1610 1653 1.179174 AAGGCAGTCGGAAAAAGCCC 61.179 55.000 0.00 0.00 46.35 5.19
1614 1657 3.551846 AGAGAAAAGGCAGTCGGAAAAA 58.448 40.909 0.00 0.00 0.00 1.94
1740 1787 2.187163 GCGCCCTCTCCCTTGTAC 59.813 66.667 0.00 0.00 0.00 2.90
1761 1808 3.726607 GGTGTAGCTGAGGATGAGATTG 58.273 50.000 0.00 0.00 0.00 2.67
1826 1874 0.038251 CACAGCAGAACGAGCCTACA 60.038 55.000 0.00 0.00 0.00 2.74
1876 1931 2.746362 CCAAGTCCAGAATCTTGCAGTC 59.254 50.000 0.00 0.00 39.47 3.51
2050 2158 5.894807 TGAAAGCAGATGCCTAAATTAAGC 58.105 37.500 0.14 0.00 43.38 3.09
2074 2182 8.636213 CCCTGCTCTCATGTTTCAATAATAAAT 58.364 33.333 0.00 0.00 0.00 1.40
2166 2302 3.118665 CGGAAGCAAAATGGGGAATCATT 60.119 43.478 0.00 0.00 38.84 2.57
2531 2686 9.136323 AGAAGAACACAGAATTTGGAAGTATTT 57.864 29.630 0.00 0.00 0.00 1.40
2532 2687 8.697507 AGAAGAACACAGAATTTGGAAGTATT 57.302 30.769 0.00 0.00 0.00 1.89
2582 2738 6.250819 CAGATTAACCAAAGTGATGCTAACG 58.749 40.000 0.00 0.00 0.00 3.18
2670 2826 8.647143 TGCCTTTTGAAAGATCTTAACAAAAG 57.353 30.769 36.44 36.44 44.56 2.27
2693 2849 3.051081 AGCGGATCCAGAGAATAATGC 57.949 47.619 13.41 2.55 0.00 3.56
2750 2913 2.860009 AGACACAGAGACACGAACCTA 58.140 47.619 0.00 0.00 0.00 3.08
2854 3017 4.516652 AATTAGAAGGGCAGAATCAGCT 57.483 40.909 0.00 0.00 0.00 4.24
2881 3044 8.990163 AAACTTTACCAGAAAATAAGGAGTGA 57.010 30.769 0.00 0.00 0.00 3.41
2982 3145 6.208599 TGGTGCATTAAGAGGGAAAGTTTTAG 59.791 38.462 0.00 0.00 0.00 1.85
2984 3147 4.898861 TGGTGCATTAAGAGGGAAAGTTTT 59.101 37.500 0.00 0.00 0.00 2.43
3009 3172 6.524101 TTTTTACACTATTCCATCCAAGGC 57.476 37.500 0.00 0.00 0.00 4.35
3030 3193 6.041069 TCCGTCCCAAAATGTAAGACAATTTT 59.959 34.615 0.00 0.00 29.45 1.82
3031 3194 5.536916 TCCGTCCCAAAATGTAAGACAATTT 59.463 36.000 0.00 0.00 31.88 1.82
3033 3196 4.658063 TCCGTCCCAAAATGTAAGACAAT 58.342 39.130 0.00 0.00 0.00 2.71
3034 3197 4.069304 CTCCGTCCCAAAATGTAAGACAA 58.931 43.478 0.00 0.00 0.00 3.18
3035 3198 3.071892 ACTCCGTCCCAAAATGTAAGACA 59.928 43.478 0.00 0.00 0.00 3.41
3038 3201 6.150474 ACAAATACTCCGTCCCAAAATGTAAG 59.850 38.462 0.00 0.00 0.00 2.34
3043 3206 7.830201 TGTAATACAAATACTCCGTCCCAAAAT 59.170 33.333 0.00 0.00 0.00 1.82
3045 3208 6.709281 TGTAATACAAATACTCCGTCCCAAA 58.291 36.000 0.00 0.00 0.00 3.28
3046 3209 6.297080 TGTAATACAAATACTCCGTCCCAA 57.703 37.500 0.00 0.00 0.00 4.12
3048 3211 5.699458 CCATGTAATACAAATACTCCGTCCC 59.301 44.000 0.00 0.00 0.00 4.46
3049 3212 6.285990 ACCATGTAATACAAATACTCCGTCC 58.714 40.000 0.00 0.00 0.00 4.79
3051 3214 9.841295 AATAACCATGTAATACAAATACTCCGT 57.159 29.630 0.00 0.00 0.00 4.69
3095 3261 9.612620 CTTATGAAATCGCAGACTTAAAAACTT 57.387 29.630 0.00 0.00 42.51 2.66
3097 3263 8.950403 ACTTATGAAATCGCAGACTTAAAAAC 57.050 30.769 0.00 0.00 42.51 2.43
3103 3269 5.352569 CCAAGACTTATGAAATCGCAGACTT 59.647 40.000 0.00 0.00 42.51 3.01
3104 3270 4.872691 CCAAGACTTATGAAATCGCAGACT 59.127 41.667 0.00 0.00 42.51 3.24
3105 3271 4.870426 TCCAAGACTTATGAAATCGCAGAC 59.130 41.667 0.00 0.00 42.51 3.51
3106 3272 5.084818 TCCAAGACTTATGAAATCGCAGA 57.915 39.130 0.00 0.00 45.75 4.26
3107 3273 5.801350 TTCCAAGACTTATGAAATCGCAG 57.199 39.130 0.00 0.00 0.00 5.18
3109 3275 9.226345 CTATTTTTCCAAGACTTATGAAATCGC 57.774 33.333 10.99 0.00 0.00 4.58
3113 3279 9.912634 CAAGCTATTTTTCCAAGACTTATGAAA 57.087 29.630 7.60 7.60 0.00 2.69
3127 3294 4.871557 TGGATGCAATGCAAGCTATTTTTC 59.128 37.500 13.45 1.16 43.62 2.29
3142 3309 3.052329 TCCTATACCACCATGGATGCAA 58.948 45.455 21.47 4.27 40.96 4.08
3143 3310 2.700354 TCCTATACCACCATGGATGCA 58.300 47.619 21.47 0.00 40.96 3.96
3144 3311 4.307032 AATCCTATACCACCATGGATGC 57.693 45.455 21.47 0.00 40.96 3.91
3145 3312 5.634118 ACAAATCCTATACCACCATGGATG 58.366 41.667 21.47 12.84 40.96 3.51
3182 3349 3.523157 TCTTGATCCTACCATTTGGCTGA 59.477 43.478 0.00 0.00 39.32 4.26
3214 3381 3.809832 CAGTACTGTCACTTTGGAGGTTG 59.190 47.826 15.06 0.00 0.00 3.77
3227 3394 6.313744 ACTTTGGCATAAAACAGTACTGTC 57.686 37.500 28.04 14.42 44.13 3.51
3277 3448 7.620880 TCCCTAGTATATGTATCCATGCAAAC 58.379 38.462 0.00 0.00 32.29 2.93
3357 3529 6.398234 AGATCGCATCTACACTACAAATCT 57.602 37.500 0.00 0.00 38.00 2.40
3366 3538 5.874892 GTGAAACTAGATCGCATCTACAC 57.125 43.478 0.00 5.77 40.76 2.90
3410 3744 4.927267 ACTGGACCAACTATCCATTTGA 57.073 40.909 0.00 0.00 45.27 2.69
3413 3747 5.103940 AGCATTACTGGACCAACTATCCATT 60.104 40.000 0.00 0.00 45.27 3.16
3415 3749 3.780294 AGCATTACTGGACCAACTATCCA 59.220 43.478 0.00 0.00 44.20 3.41
3453 3787 2.225017 ACCCAATGGAAACCACTACTGG 60.225 50.000 0.00 0.00 35.80 4.00
3635 3972 4.386652 GCATGTAAAAAGCATGTCAACTGG 59.613 41.667 7.06 0.00 43.93 4.00
3720 4071 9.539825 TGTACCGTGTTACTTGTTTCTTAATAA 57.460 29.630 0.00 0.00 0.00 1.40
3839 4190 6.935208 GTGGACAAAAGTGTAGTCTAGGATTT 59.065 38.462 0.00 0.00 38.41 2.17
3881 4232 5.983540 AGACAGGTTTGTTTATGCCAAAAA 58.016 33.333 0.00 0.00 37.76 1.94
3939 4291 9.643693 CCTGAATGCTTAAATAAACAAGAATGT 57.356 29.630 0.00 0.00 43.14 2.71
3972 4324 4.083324 ACAGTATTGCAAGAATGTCAACCG 60.083 41.667 20.32 0.00 0.00 4.44
4080 4433 5.144100 GACCCAGAGAATAGATCAAGAGGA 58.856 45.833 0.00 0.00 0.00 3.71
4083 4436 6.874278 TTTGACCCAGAGAATAGATCAAGA 57.126 37.500 0.00 0.00 0.00 3.02
4383 4736 8.978564 AGATGATGTCGTAATACAGATGAATC 57.021 34.615 0.00 0.00 31.70 2.52
4399 4752 3.540314 ACAAGGCTGAGAGATGATGTC 57.460 47.619 0.00 0.00 0.00 3.06
4506 4859 5.013599 AGCAGAAATAAGAAAGTCCCTGACT 59.986 40.000 0.00 0.00 45.64 3.41
4509 4862 5.586643 GGTAGCAGAAATAAGAAAGTCCCTG 59.413 44.000 0.00 0.00 0.00 4.45
4521 4874 1.752498 TCCTTCGCGGTAGCAGAAATA 59.248 47.619 6.13 0.00 45.49 1.40
4533 4886 1.226717 GAGGCTACAGTCCTTCGCG 60.227 63.158 0.00 0.00 33.24 5.87
4536 4889 3.133721 ACATCATGAGGCTACAGTCCTTC 59.866 47.826 7.40 0.00 33.24 3.46
4570 4923 3.181501 GGATCTGTTCTCTCACACTCTCG 60.182 52.174 0.00 0.00 0.00 4.04
4581 4934 7.048629 TGAATCATACTCAGGATCTGTTCTC 57.951 40.000 0.00 0.00 32.61 2.87
4591 4944 6.875726 TGAAGAAACACTGAATCATACTCAGG 59.124 38.462 4.96 0.00 43.88 3.86
4593 4946 7.445121 ACTGAAGAAACACTGAATCATACTCA 58.555 34.615 0.00 0.00 0.00 3.41
4608 4961 3.454375 TCGGTTCACTGACTGAAGAAAC 58.546 45.455 0.00 0.00 39.69 2.78
4614 4967 1.410004 AGGTTCGGTTCACTGACTGA 58.590 50.000 0.00 0.00 33.24 3.41
4630 4983 8.548877 ACAGAAACATACCTTGTAATCATAGGT 58.451 33.333 0.00 0.00 44.26 3.08
4691 5044 7.611770 ACTATACAAGTACATGAGTTGCTGAA 58.388 34.615 4.87 0.00 41.55 3.02
4701 5054 8.757164 TCAACAGTGAACTATACAAGTACATG 57.243 34.615 0.00 0.00 37.50 3.21
4718 5071 3.670055 GCCGAATCAATTGTTCAACAGTG 59.330 43.478 5.13 0.00 0.00 3.66
4729 5082 4.096382 AGAAACGCATAAGCCGAATCAATT 59.904 37.500 0.00 0.00 37.52 2.32
4738 5091 5.636837 TCACATAAAAGAAACGCATAAGCC 58.363 37.500 0.00 0.00 37.52 4.35
4761 5114 2.289274 TCATTCACGTGCAAACGAACAT 59.711 40.909 11.67 0.00 36.85 2.71
4787 5143 5.221283 TGCCTACACATGGAATATGCAATTG 60.221 40.000 0.00 0.00 0.00 2.32
4871 5227 6.925211 AGTGTAGAAATTGACGATCTTCTGA 58.075 36.000 0.48 0.00 30.90 3.27
5118 5489 1.956170 AAACAGCAGTGACCGCTCG 60.956 57.895 0.00 0.00 37.72 5.03
5142 5513 3.504906 ACTCGTAAGCTACAGTAACAGCA 59.495 43.478 0.00 0.00 40.36 4.41
5160 5531 5.707242 AGGTATACATGATGTACCACTCG 57.293 43.478 17.26 0.00 45.38 4.18
5209 5580 5.487433 TGTGTATCGAATTCCTGATGTGTT 58.513 37.500 0.00 0.00 0.00 3.32
5214 5585 5.352284 GTGTCTGTGTATCGAATTCCTGAT 58.648 41.667 0.00 0.59 0.00 2.90
5215 5586 4.381612 GGTGTCTGTGTATCGAATTCCTGA 60.382 45.833 0.00 0.00 0.00 3.86
5288 5659 1.818785 GCTCCCATCTCTGCTGCAC 60.819 63.158 0.00 0.00 0.00 4.57
5357 5728 1.836999 ATGCGCCAGTTACCAGGTGA 61.837 55.000 4.18 0.00 37.61 4.02
5364 5735 2.858344 CAGTAGTACATGCGCCAGTTAC 59.142 50.000 4.18 4.11 0.00 2.50
5396 5903 0.947244 AGAGAAGCAACCGCAAACTG 59.053 50.000 0.00 0.00 42.27 3.16
5417 5924 4.142816 CCGGAAACAATAAGCAACTGAGAG 60.143 45.833 0.00 0.00 0.00 3.20
5438 5945 3.673323 TCGAGAGATGACAATGTTGTCCG 60.673 47.826 19.86 15.16 45.78 4.79
5466 5973 7.227512 GCTACATGGAAAATCTAGCTACACAAT 59.772 37.037 0.00 0.00 0.00 2.71
5467 5974 6.538742 GCTACATGGAAAATCTAGCTACACAA 59.461 38.462 0.00 0.00 0.00 3.33
5510 6017 1.131638 TCTGGTCTGGTTGCTCAGTT 58.868 50.000 0.00 0.00 36.25 3.16
5571 6078 6.460123 GCATGAAGTTCATTGGGATAATTCGT 60.460 38.462 15.85 0.00 34.28 3.85
5573 6080 6.808829 TGCATGAAGTTCATTGGGATAATTC 58.191 36.000 15.85 0.00 34.28 2.17
5598 6114 4.280677 TCTCAAAAATGGCTTTGGATCGTT 59.719 37.500 0.00 0.00 37.00 3.85
5600 6116 4.168760 GTCTCAAAAATGGCTTTGGATCG 58.831 43.478 0.00 0.00 37.00 3.69
5609 6125 4.525912 ACTCATTGGTCTCAAAAATGGC 57.474 40.909 0.00 0.00 36.36 4.40
5621 6138 0.827507 GGGGCACACAACTCATTGGT 60.828 55.000 0.00 0.00 40.42 3.67
5624 6141 1.603455 CCGGGGCACACAACTCATT 60.603 57.895 0.00 0.00 0.00 2.57
5626 6143 1.697082 TAACCGGGGCACACAACTCA 61.697 55.000 6.32 0.00 0.00 3.41
5640 6157 9.545611 GGTACAAATTGTAGTACAAAATAACCG 57.454 33.333 19.19 7.01 41.96 4.44
5675 6192 1.084289 GGTCTTGTAACCGGTGCATC 58.916 55.000 8.52 0.00 0.00 3.91
5677 6194 0.250124 CTGGTCTTGTAACCGGTGCA 60.250 55.000 8.52 8.13 42.62 4.57
5701 6218 2.200373 TCTAGCAAAAGAACTGGGCC 57.800 50.000 0.00 0.00 0.00 5.80
5702 6219 4.013050 AGATTCTAGCAAAAGAACTGGGC 58.987 43.478 0.00 0.00 38.28 5.36
5704 6221 4.397417 CCCAGATTCTAGCAAAAGAACTGG 59.603 45.833 21.72 21.72 44.23 4.00
5705 6222 4.397417 CCCCAGATTCTAGCAAAAGAACTG 59.603 45.833 13.14 13.14 38.28 3.16
5706 6223 4.289672 TCCCCAGATTCTAGCAAAAGAACT 59.710 41.667 0.00 0.00 38.28 3.01
5707 6224 4.589908 TCCCCAGATTCTAGCAAAAGAAC 58.410 43.478 0.00 0.00 38.28 3.01
5708 6225 4.927267 TCCCCAGATTCTAGCAAAAGAA 57.073 40.909 0.00 0.00 39.71 2.52
5709 6226 5.456921 AATCCCCAGATTCTAGCAAAAGA 57.543 39.130 0.00 0.00 38.36 2.52
5731 6248 0.042731 AGGGGTCGGATTCTGGAAGA 59.957 55.000 0.00 0.00 44.68 2.87
5732 6249 1.413077 GTAGGGGTCGGATTCTGGAAG 59.587 57.143 0.00 0.00 0.00 3.46
5733 6250 1.492764 GTAGGGGTCGGATTCTGGAA 58.507 55.000 0.00 0.00 0.00 3.53
5734 6251 0.398098 GGTAGGGGTCGGATTCTGGA 60.398 60.000 0.00 0.00 0.00 3.86
5735 6252 1.408453 GGGTAGGGGTCGGATTCTGG 61.408 65.000 0.00 0.00 0.00 3.86
5736 6253 0.689745 TGGGTAGGGGTCGGATTCTG 60.690 60.000 0.00 0.00 0.00 3.02
5737 6254 0.398664 CTGGGTAGGGGTCGGATTCT 60.399 60.000 0.00 0.00 0.00 2.40
5739 6256 2.070650 GCTGGGTAGGGGTCGGATT 61.071 63.158 0.00 0.00 0.00 3.01
5741 6258 3.248248 AAGCTGGGTAGGGGTCGGA 62.248 63.158 0.00 0.00 0.00 4.55
5742 6259 2.687566 AAGCTGGGTAGGGGTCGG 60.688 66.667 0.00 0.00 0.00 4.79
5743 6260 2.732619 GGAAGCTGGGTAGGGGTCG 61.733 68.421 0.00 0.00 0.00 4.79
5746 6263 2.042930 AGGGAAGCTGGGTAGGGG 59.957 66.667 0.00 0.00 0.00 4.79
5747 6264 0.695803 ATGAGGGAAGCTGGGTAGGG 60.696 60.000 0.00 0.00 0.00 3.53
5748 6265 2.103153 TATGAGGGAAGCTGGGTAGG 57.897 55.000 0.00 0.00 0.00 3.18
5749 6266 3.906846 AGATTATGAGGGAAGCTGGGTAG 59.093 47.826 0.00 0.00 0.00 3.18
5750 6267 3.941629 AGATTATGAGGGAAGCTGGGTA 58.058 45.455 0.00 0.00 0.00 3.69
5751 6268 2.781667 AGATTATGAGGGAAGCTGGGT 58.218 47.619 0.00 0.00 0.00 4.51
5753 6270 4.785301 TCAAAGATTATGAGGGAAGCTGG 58.215 43.478 0.00 0.00 0.00 4.85
5754 6271 4.275443 GCTCAAAGATTATGAGGGAAGCTG 59.725 45.833 5.76 0.00 43.60 4.24
5755 6272 4.459330 GCTCAAAGATTATGAGGGAAGCT 58.541 43.478 5.76 0.00 43.60 3.74
5758 6275 3.117512 GGGGCTCAAAGATTATGAGGGAA 60.118 47.826 5.76 0.00 43.60 3.97
5759 6276 2.443255 GGGGCTCAAAGATTATGAGGGA 59.557 50.000 5.76 0.00 43.60 4.20
5761 6278 3.582998 TGGGGCTCAAAGATTATGAGG 57.417 47.619 5.76 0.00 43.60 3.86
5762 6279 5.361857 ACAAATGGGGCTCAAAGATTATGAG 59.638 40.000 0.00 0.00 45.65 2.90
5763 6280 5.271598 ACAAATGGGGCTCAAAGATTATGA 58.728 37.500 0.00 0.00 0.00 2.15
5764 6281 5.603170 ACAAATGGGGCTCAAAGATTATG 57.397 39.130 0.00 0.00 0.00 1.90
5766 6283 6.432403 AAAACAAATGGGGCTCAAAGATTA 57.568 33.333 0.00 0.00 0.00 1.75
5768 6285 4.980339 AAAACAAATGGGGCTCAAAGAT 57.020 36.364 0.00 0.00 0.00 2.40
5769 6286 4.651503 TGTAAAACAAATGGGGCTCAAAGA 59.348 37.500 0.00 0.00 0.00 2.52
5770 6287 4.954875 TGTAAAACAAATGGGGCTCAAAG 58.045 39.130 0.00 0.00 0.00 2.77
5772 6289 5.512232 GGATTGTAAAACAAATGGGGCTCAA 60.512 40.000 0.00 0.00 41.96 3.02
5774 6291 4.222810 AGGATTGTAAAACAAATGGGGCTC 59.777 41.667 0.00 0.00 41.96 4.70
5778 6295 6.345096 AGACAGGATTGTAAAACAAATGGG 57.655 37.500 0.00 0.00 41.96 4.00
5802 6319 9.900112 ACAATCCTATCTAGTTAGGGTCTAATT 57.100 33.333 21.70 13.14 39.45 1.40
5807 6324 9.761504 GTTTTACAATCCTATCTAGTTAGGGTC 57.238 37.037 21.70 3.01 39.45 4.46
5814 6331 9.408648 CCCATTTGTTTTACAATCCTATCTAGT 57.591 33.333 0.00 0.00 38.00 2.57
5816 6333 7.286775 GCCCCATTTGTTTTACAATCCTATCTA 59.713 37.037 0.00 0.00 38.00 1.98
5817 6334 6.098266 GCCCCATTTGTTTTACAATCCTATCT 59.902 38.462 0.00 0.00 38.00 1.98
5818 6335 6.098266 AGCCCCATTTGTTTTACAATCCTATC 59.902 38.462 0.00 0.00 38.00 2.08
5819 6336 5.963865 AGCCCCATTTGTTTTACAATCCTAT 59.036 36.000 0.00 0.00 38.00 2.57
5820 6337 5.337788 AGCCCCATTTGTTTTACAATCCTA 58.662 37.500 0.00 0.00 38.00 2.94
5821 6338 4.167319 AGCCCCATTTGTTTTACAATCCT 58.833 39.130 0.00 0.00 38.00 3.24
5823 6340 5.146010 TGAGCCCCATTTGTTTTACAATC 57.854 39.130 0.00 0.00 38.00 2.67
5824 6341 5.559148 TTGAGCCCCATTTGTTTTACAAT 57.441 34.783 0.00 0.00 38.00 2.71
5827 6344 5.208463 TCTTTGAGCCCCATTTGTTTTAC 57.792 39.130 0.00 0.00 0.00 2.01
5828 6345 6.269769 AGAATCTTTGAGCCCCATTTGTTTTA 59.730 34.615 0.00 0.00 0.00 1.52
5829 6346 4.980339 ATCTTTGAGCCCCATTTGTTTT 57.020 36.364 0.00 0.00 0.00 2.43
5831 6348 4.020839 CAGAATCTTTGAGCCCCATTTGTT 60.021 41.667 0.00 0.00 0.00 2.83
5832 6349 3.512724 CAGAATCTTTGAGCCCCATTTGT 59.487 43.478 0.00 0.00 0.00 2.83
5833 6350 3.118884 CCAGAATCTTTGAGCCCCATTTG 60.119 47.826 0.00 0.00 0.00 2.32
5834 6351 3.102204 CCAGAATCTTTGAGCCCCATTT 58.898 45.455 0.00 0.00 0.00 2.32
5835 6352 2.312741 TCCAGAATCTTTGAGCCCCATT 59.687 45.455 0.00 0.00 0.00 3.16
5836 6353 1.925255 TCCAGAATCTTTGAGCCCCAT 59.075 47.619 0.00 0.00 0.00 4.00
5838 6355 2.025887 TCTTCCAGAATCTTTGAGCCCC 60.026 50.000 0.00 0.00 0.00 5.80
5839 6356 3.356529 TCTTCCAGAATCTTTGAGCCC 57.643 47.619 0.00 0.00 0.00 5.19
5840 6357 3.128415 GCTTCTTCCAGAATCTTTGAGCC 59.872 47.826 0.00 0.00 33.13 4.70
5841 6358 4.009002 AGCTTCTTCCAGAATCTTTGAGC 58.991 43.478 0.00 0.00 33.13 4.26
5842 6359 4.395542 CCAGCTTCTTCCAGAATCTTTGAG 59.604 45.833 0.00 0.00 33.13 3.02
5845 6362 3.075134 ACCCAGCTTCTTCCAGAATCTTT 59.925 43.478 0.00 0.00 33.13 2.52
5846 6363 2.646798 ACCCAGCTTCTTCCAGAATCTT 59.353 45.455 0.00 0.00 33.13 2.40
5848 6365 2.797177 ACCCAGCTTCTTCCAGAATC 57.203 50.000 0.00 0.00 33.13 2.52
5849 6366 2.507471 CCTACCCAGCTTCTTCCAGAAT 59.493 50.000 0.00 0.00 33.13 2.40
5850 6367 1.909302 CCTACCCAGCTTCTTCCAGAA 59.091 52.381 0.00 0.00 32.50 3.02
5852 6369 0.543749 CCCTACCCAGCTTCTTCCAG 59.456 60.000 0.00 0.00 0.00 3.86
5854 6371 0.914902 ACCCCTACCCAGCTTCTTCC 60.915 60.000 0.00 0.00 0.00 3.46
5856 6373 1.265454 CGACCCCTACCCAGCTTCTT 61.265 60.000 0.00 0.00 0.00 2.52
5857 6374 1.686110 CGACCCCTACCCAGCTTCT 60.686 63.158 0.00 0.00 0.00 2.85
5862 6379 0.916809 AAAATCCGACCCCTACCCAG 59.083 55.000 0.00 0.00 0.00 4.45
5863 6380 0.621609 CAAAATCCGACCCCTACCCA 59.378 55.000 0.00 0.00 0.00 4.51
5865 6382 0.106868 CCCAAAATCCGACCCCTACC 60.107 60.000 0.00 0.00 0.00 3.18
5868 6385 1.137594 TGTCCCAAAATCCGACCCCT 61.138 55.000 0.00 0.00 0.00 4.79
5869 6386 0.251430 TTGTCCCAAAATCCGACCCC 60.251 55.000 0.00 0.00 0.00 4.95
5870 6387 1.749063 GATTGTCCCAAAATCCGACCC 59.251 52.381 0.00 0.00 0.00 4.46
5871 6388 1.749063 GGATTGTCCCAAAATCCGACC 59.251 52.381 0.00 0.00 42.68 4.79
5893 6410 3.057033 CCCAGTTCTTTTGCCAGAATCTG 60.057 47.826 2.68 2.68 35.23 2.90
5895 6412 2.353109 GCCCAGTTCTTTTGCCAGAATC 60.353 50.000 0.00 0.00 35.23 2.52
5897 6414 1.039856 GCCCAGTTCTTTTGCCAGAA 58.960 50.000 0.00 0.00 0.00 3.02
5899 6416 0.829182 AGGCCCAGTTCTTTTGCCAG 60.829 55.000 0.00 0.00 44.60 4.85
5902 6419 3.181500 CGTATAAGGCCCAGTTCTTTTGC 60.181 47.826 0.00 0.00 0.00 3.68
5903 6420 3.377172 CCGTATAAGGCCCAGTTCTTTTG 59.623 47.826 0.00 0.00 0.00 2.44
5904 6421 3.617284 CCGTATAAGGCCCAGTTCTTTT 58.383 45.455 0.00 0.00 0.00 2.27
5916 6433 1.603802 CTTGCACATGGCCGTATAAGG 59.396 52.381 0.00 0.00 43.89 2.69
5918 6435 1.021202 GCTTGCACATGGCCGTATAA 58.979 50.000 0.00 0.00 43.89 0.98
5919 6436 0.817634 GGCTTGCACATGGCCGTATA 60.818 55.000 0.00 0.00 43.89 1.47
5920 6437 2.120909 GGCTTGCACATGGCCGTAT 61.121 57.895 0.00 0.00 43.89 3.06
5921 6438 2.749839 GGCTTGCACATGGCCGTA 60.750 61.111 0.00 0.00 43.89 4.02
5924 6441 2.185867 CATGGCTTGCACATGGCC 59.814 61.111 7.69 9.39 43.89 5.36
5929 6446 0.323633 ATAGCACCATGGCTTGCACA 60.324 50.000 24.68 14.62 42.71 4.57
5930 6447 0.383231 GATAGCACCATGGCTTGCAC 59.617 55.000 24.68 13.93 42.71 4.57
5931 6448 0.256752 AGATAGCACCATGGCTTGCA 59.743 50.000 24.68 13.61 42.71 4.08
5932 6449 0.950116 GAGATAGCACCATGGCTTGC 59.050 55.000 17.48 17.48 42.71 4.01
5933 6450 2.634815 AGAGATAGCACCATGGCTTG 57.365 50.000 13.04 4.59 42.71 4.01
5934 6451 2.507058 TGAAGAGATAGCACCATGGCTT 59.493 45.455 13.04 4.00 42.71 4.35
5937 6454 4.620589 ATCTGAAGAGATAGCACCATGG 57.379 45.455 11.19 11.19 37.15 3.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.