AutoCloner

Multiple sequence alignment - TraesCS2B01G524600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS2B01G524600	chr2B	100.000	3062	0	0	1	3062	719123876	719126937	0.000000e+00	5655
1	TraesCS2B01G524600	chr2B	88.191	398	29	13	336	725	719150950	719151337	2.780000e-125	459
2	TraesCS2B01G524600	chr2D	90.916	2730	176	28	356	3062	593107574	593110254	0.000000e+00	3602
3	TraesCS2B01G524600	chr2D	90.603	2703	170	35	386	3062	592993425	592996069	0.000000e+00	3507
4	TraesCS2B01G524600	chr2D	89.716	2499	177	35	585	3062	593003014	593005453	0.000000e+00	3118
5	TraesCS2B01G524600	chr2D	85.193	1479	150	31	12	1465	593022874	593024308	0.000000e+00	1454
6	TraesCS2B01G524600	chr2D	84.464	1474	158	32	1	1422	593121241	593122695	0.000000e+00	1387
7	TraesCS2B01G524600	chr2D	84.363	761	72	23	1	725	593030771	593031520	0.000000e+00	702
8	TraesCS2B01G524600	chr2D	81.702	705	73	26	11	691	593113394	593114066	1.250000e-148	536
9	TraesCS2B01G524600	chr2D	89.277	401	16	8	1	401	592991709	592992082	7.680000e-131	477
10	TraesCS2B01G524600	chr2D	78.239	602	80	26	11	595	592998858	592999425	3.780000e-89	339
11	TraesCS2B01G524600	chr2D	87.156	109	14	0	226	334	593103333	593103441	1.150000e-24	124
12	TraesCS2B01G524600	chr2A	86.941	3063	265	68	33	3062	727436258	727439218	0.000000e+00	3315
13	TraesCS2B01G524600	chr2A	89.476	2670	202	44	415	3062	727429957	727432569	0.000000e+00	3301
14	TraesCS2B01G524600	chr2A	89.167	2197	161	35	329	2511	727412875	727415008	0.000000e+00	2667
15	TraesCS2B01G524600	chr2A	91.078	1614	107	18	904	2511	727384876	727386458	0.000000e+00	2148
16	TraesCS2B01G524600	chr2A	90.812	1589	109	18	929	2511	727335640	727337197	0.000000e+00	2091
17	TraesCS2B01G524600	chr2A	89.044	429	21	8	1	429	727303865	727304267	2.720000e-140	508
18	TraesCS2B01G524600	chr2A	89.044	429	21	8	1	429	727349155	727349557	2.720000e-140	508
19	TraesCS2B01G524600	chr2A	94.760	229	12	0	1	229	727426839	727427067	1.040000e-94	357
20	TraesCS2B01G524600	chr2A	83.902	205	8	7	225	429	727429419	727429598	4.060000e-39	172
21	TraesCS2B01G524600	chrUn	91.016	1614	108	18	904	2511	340445120	340443538	0.000000e+00	2143

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS2B01G524600	chr2B	719123876	719126937	3061	False	5655.00	5655	100.00000	1	3062	1	chr2B.!!$F1	3061
1	TraesCS2B01G524600	chr2D	593107574	593114066	6492	False	2069.00	3602	86.30900	11	3062	2	chr2D.!!$F6	3051
2	TraesCS2B01G524600	chr2D	592991709	593005453	13744	False	1860.25	3507	86.95875	1	3062	4	chr2D.!!$F5	3061
3	TraesCS2B01G524600	chr2D	593022874	593024308	1434	False	1454.00	1454	85.19300	12	1465	1	chr2D.!!$F1	1453
4	TraesCS2B01G524600	chr2D	593121241	593122695	1454	False	1387.00	1387	84.46400	1	1422	1	chr2D.!!$F4	1421
5	TraesCS2B01G524600	chr2D	593030771	593031520	749	False	702.00	702	84.36300	1	725	1	chr2D.!!$F2	724
6	TraesCS2B01G524600	chr2A	727412875	727415008	2133	False	2667.00	2667	89.16700	329	2511	1	chr2A.!!$F5	2182
7	TraesCS2B01G524600	chr2A	727384876	727386458	1582	False	2148.00	2148	91.07800	904	2511	1	chr2A.!!$F4	1607
8	TraesCS2B01G524600	chr2A	727335640	727337197	1557	False	2091.00	2091	90.81200	929	2511	1	chr2A.!!$F2	1582
9	TraesCS2B01G524600	chr2A	727426839	727439218	12379	False	1786.25	3315	88.76975	1	3062	4	chr2A.!!$F6	3061
10	TraesCS2B01G524600	chrUn	340443538	340445120	1582	True	2143.00	2143	91.01600	904	2511	1	chrUn.!!$R1	1607

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
531	4651	0.602905	AACTGGCCTTGTACGCACTC	60.603	55.0	3.32	0.00	0.0	3.51	F
1473	21681	0.468648	AGCTTAGATTACACCCGGGC	59.531	55.0	24.08	2.05	0.0	6.13	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1476	21684	0.533755	AACTCCGCTAGCATCATGGC	60.534	55.000	16.45	0.0	0.0	4.4	R
2786	23003	1.824852	GGTTTACTTTGCCCCCATCAG	59.175	52.381	0.00	0.0	0.0	2.9	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
70	72	2.187946	CCGTGTCATGGCCTCCTC	59.812	66.667	3.32	0.00	0.00	3.71
195	205	2.753029	GACTGGTGGCAAGAGGCT	59.247	61.111	0.00	0.00	44.01	4.58
292	2660	9.448294	GACCTATGATAACTAACTAACAAGACG	57.552	37.037	0.00	0.00	0.00	4.18
293	2661	8.964772	ACCTATGATAACTAACTAACAAGACGT	58.035	33.333	0.00	0.00	0.00	4.34
303	2676	1.365699	AACAAGACGTGCGAGTTGTT	58.634	45.000	16.77	16.77	38.10	2.83
496	4616	4.275936	GGCTATACATGGAAAGAAACGCAT	59.724	41.667	0.00	0.00	0.00	4.73
531	4651	0.602905	AACTGGCCTTGTACGCACTC	60.603	55.000	3.32	0.00	0.00	3.51
653	4780	1.842052	AATCAAAATTACCCCGCCGT	58.158	45.000	0.00	0.00	0.00	5.68
837	4980	6.155221	TGGTATACAGAAAGAGAGCAATGTCT	59.845	38.462	5.01	0.00	0.00	3.41
866	5009	3.055719	CATGAAGTTGGGCGGCGT	61.056	61.111	9.37	0.00	0.00	5.68
950	5100	1.822990	ACTGGCCAAGAATGATTGCAG	59.177	47.619	7.01	0.00	0.00	4.41
1032	11843	2.668212	CACCGCGACCACCATGTT	60.668	61.111	8.23	0.00	0.00	2.71
1343	21539	0.836400	TCTCCCGTTTCTGCTCCCTT	60.836	55.000	0.00	0.00	0.00	3.95
1360	21559	0.884704	CTTGGCTGCAAGGTGTACGT	60.885	55.000	0.50	0.00	0.00	3.57
1396	21598	3.186909	TCTCGTGCATGATTTCCTAACG	58.813	45.455	9.53	0.00	0.00	3.18
1446	21654	5.221244	CCATGCCGATGTATAGGATCGATTA	60.221	44.000	13.34	0.00	44.46	1.75
1449	21657	5.297029	TGCCGATGTATAGGATCGATTAGAG	59.703	44.000	13.34	0.76	44.46	2.43
1472	21680	2.288886	GCTAGCTTAGATTACACCCGGG	60.289	54.545	22.25	22.25	0.00	5.73
1473	21681	0.468648	AGCTTAGATTACACCCGGGC	59.531	55.000	24.08	2.05	0.00	6.13
1474	21682	0.534427	GCTTAGATTACACCCGGGCC	60.534	60.000	24.08	0.00	0.00	5.80
1475	21683	0.249741	CTTAGATTACACCCGGGCCG	60.250	60.000	24.08	21.46	0.00	6.13
1504	21712	2.028112	TGCTAGCGGAGTTGAAATCACT	60.028	45.455	10.77	0.00	0.00	3.41
1556	21765	3.255725	GTTTACATGTTCCGACCGATCA	58.744	45.455	2.30	0.00	0.00	2.92
1620	21831	7.068593	TCCAAATAATATCCCAGTGAGCAAAAG	59.931	37.037	0.00	0.00	0.00	2.27
1642	21853	4.570772	AGATATTTGGATCCAAACACGTCG	59.429	41.667	36.31	0.00	46.80	5.12
1775	21986	3.497297	TGATTGTTCAGACATGCATGC	57.503	42.857	26.53	18.25	35.29	4.06
1776	21987	2.820787	TGATTGTTCAGACATGCATGCA	59.179	40.909	26.53	25.04	35.29	3.96
1791	22002	2.740981	GCATGCAGCCTACATACATCTC	59.259	50.000	14.21	0.00	37.23	2.75
1812	22023	9.860650	CATCTCCTAACTAGCTGGTCTATATAT	57.139	37.037	2.06	0.00	0.00	0.86
1823	22034	8.343168	AGCTGGTCTATATATACTTGACTCAC	57.657	38.462	9.33	2.31	0.00	3.51
1870	22082	3.582647	TCAGCTTGAAGGAATGGTGTCTA	59.417	43.478	0.00	0.00	0.00	2.59
1927	22139	5.181748	GCAAGTTGGAATACTCAGACTCAT	58.818	41.667	4.75	0.00	0.00	2.90
1954	22166	0.173481	CGGAGAAGAAGATGACGGCA	59.827	55.000	0.00	0.00	0.00	5.69
2152	22364	6.413018	TCATTTGAGACATGTTGATCTTCG	57.587	37.500	0.00	0.00	0.00	3.79
2177	22389	7.913297	CGTTTCTTTCTAGAGATAGGTCAAGAG	59.087	40.741	0.00	0.00	0.00	2.85
2238	22452	7.864686	TGCCTCGAATATATATTATGCATTGC	58.135	34.615	3.54	0.46	0.00	3.56
2317	22531	8.971321	GCTATTTATTTTGGATGCTACAATGTG	58.029	33.333	0.00	0.00	0.00	3.21
2462	22677	4.051237	CACGCGATCCATTTTCTATGAGA	58.949	43.478	15.93	0.00	0.00	3.27
2540	22755	6.484364	TGAGAGAATGCATATAGGTTGTGA	57.516	37.500	0.00	0.00	0.00	3.58
2593	22808	7.340256	TGCATAAGATATCATCATGTATGGCA	58.660	34.615	5.32	0.00	36.15	4.92
2741	22957	9.444600	TCGGTTTTTGTAAATCTTCTATAGCTT	57.555	29.630	0.00	0.00	0.00	3.74
2766	22982	8.568676	TTTTTGTCATTCTATAAACCGATGGA	57.431	30.769	0.00	0.00	0.00	3.41
2780	22997	3.904339	ACCGATGGAGGCTACAAAGATAT	59.096	43.478	2.08	0.00	33.69	1.63
2781	22998	4.248859	CCGATGGAGGCTACAAAGATATG	58.751	47.826	2.08	0.00	0.00	1.78
2786	23003	7.276658	CGATGGAGGCTACAAAGATATGATAAC	59.723	40.741	2.08	0.00	0.00	1.89
2800	23017	3.017048	TGATAACTGATGGGGGCAAAG	57.983	47.619	0.00	0.00	0.00	2.77
2804	23021	2.990740	ACTGATGGGGGCAAAGTAAA	57.009	45.000	0.00	0.00	0.00	2.01
2814	23031	4.445019	GGGGGCAAAGTAAACCAAAATGAA	60.445	41.667	0.00	0.00	0.00	2.57
2846	23068	4.844349	TTTTTGGAGGAGAGGGTGATAG	57.156	45.455	0.00	0.00	0.00	2.08
2894	23116	9.745880	TGATCTAATTCTAGTGATTCGTAAACC	57.254	33.333	0.00	0.00	0.00	3.27
2920	23142	9.499585	CTATTTCATTATCTGTTGTTTCAGCAG	57.500	33.333	7.16	7.16	42.61	4.24
2927	23149	1.872952	TGTTGTTTCAGCAGATCACCG	59.127	47.619	0.00	0.00	0.00	4.94
2929	23151	3.064207	GTTGTTTCAGCAGATCACCGTA	58.936	45.455	0.00	0.00	0.00	4.02
2972	23194	3.680196	GCGTCCTTATGAGCCTTTTCTCT	60.680	47.826	0.00	0.00	34.29	3.10
2980	23202	5.707066	ATGAGCCTTTTCTCTTCCAGTAT	57.293	39.130	0.00	0.00	34.29	2.12
2996	23218	3.980775	CCAGTATCGTTTGCTTTTGGTTG	59.019	43.478	0.00	0.00	0.00	3.77
2999	23221	4.822896	AGTATCGTTTGCTTTTGGTTGGTA	59.177	37.500	0.00	0.00	0.00	3.25
3001	23223	4.657436	TCGTTTGCTTTTGGTTGGTATT	57.343	36.364	0.00	0.00	0.00	1.89
3016	23238	6.945435	TGGTTGGTATTAGTGATGTCAACATT	59.055	34.615	13.21	0.00	36.57	2.71
3026	23248	7.566760	AGTGATGTCAACATTGTTTGTTCTA	57.433	32.000	0.00	0.00	45.55	2.10

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
153	159	4.081365	TCAGTTTCTACTCCACAACACACA	60.081	41.667	0.00	0.00	30.26	3.72
195	205	3.713826	GTTGATAACCAGGGTCAAGGA	57.286	47.619	4.84	0.00	32.98	3.36
303	2676	6.255237	CACCATATGCAATGCAAAATTTACGA	59.745	34.615	13.45	0.00	43.62	3.43
305	2678	7.278424	ACTCACCATATGCAATGCAAAATTTAC	59.722	33.333	13.45	0.00	43.62	2.01
307	2680	6.174760	ACTCACCATATGCAATGCAAAATTT	58.825	32.000	13.45	0.00	43.62	1.82
496	4616	2.354510	CCAGTTCGAAACAAGACTTGCA	59.645	45.455	15.24	0.00	0.00	4.08
837	4980	1.445410	CTTCATGCCCGACGACGAA	60.445	57.895	9.28	0.00	42.66	3.85
1032	11843	7.469594	CGCTTGTATATGTTAAGTACCTGGAGA	60.470	40.741	0.00	0.00	0.00	3.71
1327	21523	1.675641	CCAAGGGAGCAGAAACGGG	60.676	63.158	0.00	0.00	0.00	5.28
1343	21539	1.596752	CACGTACACCTTGCAGCCA	60.597	57.895	0.00	0.00	0.00	4.75
1360	21559	1.075542	CGAGAAATGTTAGGTGCGCA	58.924	50.000	5.66	5.66	0.00	6.09
1446	21654	4.830600	GGGTGTAATCTAAGCTAGCTCTCT	59.169	45.833	19.65	5.00	0.00	3.10
1449	21657	3.305471	CCGGGTGTAATCTAAGCTAGCTC	60.305	52.174	19.65	3.86	0.00	4.09
1472	21680	3.360340	GCTAGCATCATGGCCGGC	61.360	66.667	21.18	21.18	0.00	6.13
1473	21681	3.046087	CGCTAGCATCATGGCCGG	61.046	66.667	16.45	0.00	0.00	6.13
1474	21682	3.046087	CCGCTAGCATCATGGCCG	61.046	66.667	16.45	0.00	0.00	6.13
1475	21683	1.670406	CTCCGCTAGCATCATGGCC	60.670	63.158	16.45	0.00	0.00	5.36
1476	21684	0.533755	AACTCCGCTAGCATCATGGC	60.534	55.000	16.45	0.00	0.00	4.40
1504	21712	6.348132	CGATGTACTGGTTGACAAGCATTTTA	60.348	38.462	19.65	9.34	38.36	1.52
1556	21765	5.882557	CAGAGGATTATGCACCACTTAAGTT	59.117	40.000	5.07	0.00	0.00	2.66
1588	21797	7.060421	TCACTGGGATATTATTTGGAGGAAAC	58.940	38.462	0.00	0.00	0.00	2.78
1589	21798	7.219601	TCACTGGGATATTATTTGGAGGAAA	57.780	36.000	0.00	0.00	0.00	3.13
1591	21800	5.221925	GCTCACTGGGATATTATTTGGAGGA	60.222	44.000	0.00	0.00	0.00	3.71
1597	21806	8.773033	ATCTTTTGCTCACTGGGATATTATTT	57.227	30.769	0.00	0.00	0.00	1.40
1601	21812	8.636213	CAAATATCTTTTGCTCACTGGGATATT	58.364	33.333	0.00	0.00	36.85	1.28
1620	21831	4.569162	TCGACGTGTTTGGATCCAAATATC	59.431	41.667	36.08	27.03	45.90	1.63
1773	21984	2.682594	AGGAGATGTATGTAGGCTGCA	58.317	47.619	7.99	7.99	0.00	4.41
1774	21985	4.282195	AGTTAGGAGATGTATGTAGGCTGC	59.718	45.833	0.00	0.00	0.00	5.25
1775	21986	6.349777	GCTAGTTAGGAGATGTATGTAGGCTG	60.350	46.154	0.00	0.00	0.00	4.85
1776	21987	5.712917	GCTAGTTAGGAGATGTATGTAGGCT	59.287	44.000	0.00	0.00	0.00	4.58
1823	22034	7.024768	ACATCAACGGGAAACATAAATTTACG	58.975	34.615	0.00	0.00	0.00	3.18
1870	22082	6.494491	TCAAGAATGAATGTCAAGTTGGGATT	59.506	34.615	2.34	1.70	30.99	3.01
1927	22139	4.158025	GTCATCTTCTTCTCCGGTTGAGTA	59.842	45.833	0.00	0.00	42.12	2.59
2152	22364	8.962679	TCTCTTGACCTATCTCTAGAAAGAAAC	58.037	37.037	0.00	0.00	0.00	2.78
2177	22389	1.597663	CAGACCAACCGAAACACTGTC	59.402	52.381	0.00	0.00	0.00	3.51
2386	22600	7.789026	AGTATTCTAGTTTATGGGTAAAGCGT	58.211	34.615	0.00	0.00	30.76	5.07
2513	22728	8.461222	CACAACCTATATGCATTCTCTCAAAAA	58.539	33.333	3.54	0.00	0.00	1.94
2514	22729	7.828717	TCACAACCTATATGCATTCTCTCAAAA	59.171	33.333	3.54	0.00	0.00	2.44
2515	22730	7.337938	TCACAACCTATATGCATTCTCTCAAA	58.662	34.615	3.54	0.00	0.00	2.69
2516	22731	6.888105	TCACAACCTATATGCATTCTCTCAA	58.112	36.000	3.54	0.00	0.00	3.02
2517	22732	6.484364	TCACAACCTATATGCATTCTCTCA	57.516	37.500	3.54	0.00	0.00	3.27
2518	22733	6.128336	GCATCACAACCTATATGCATTCTCTC	60.128	42.308	3.54	0.00	43.30	3.20
2519	22734	5.704515	GCATCACAACCTATATGCATTCTCT	59.295	40.000	3.54	0.00	43.30	3.10
2520	22735	5.936054	GCATCACAACCTATATGCATTCTC	58.064	41.667	3.54	0.00	43.30	2.87
2521	22736	5.954296	GCATCACAACCTATATGCATTCT	57.046	39.130	3.54	0.00	43.30	2.40
2526	22741	5.297776	AGACTTTGCATCACAACCTATATGC	59.702	40.000	0.00	0.00	43.92	3.14
2527	22742	6.932356	AGACTTTGCATCACAACCTATATG	57.068	37.500	0.00	0.00	38.23	1.78
2528	22743	8.432013	TCATAGACTTTGCATCACAACCTATAT	58.568	33.333	0.00	0.00	38.23	0.86
2529	22744	7.791029	TCATAGACTTTGCATCACAACCTATA	58.209	34.615	0.00	0.00	38.23	1.31
2530	22745	6.653020	TCATAGACTTTGCATCACAACCTAT	58.347	36.000	0.00	0.00	38.23	2.57
2531	22746	6.048732	TCATAGACTTTGCATCACAACCTA	57.951	37.500	0.00	0.00	38.23	3.08
2532	22747	4.910195	TCATAGACTTTGCATCACAACCT	58.090	39.130	0.00	0.00	38.23	3.50
2533	22748	5.627499	TTCATAGACTTTGCATCACAACC	57.373	39.130	0.00	0.00	38.23	3.77
2534	22749	6.615088	ACATTCATAGACTTTGCATCACAAC	58.385	36.000	0.00	0.00	38.23	3.32
2535	22750	6.822667	ACATTCATAGACTTTGCATCACAA	57.177	33.333	0.00	0.00	36.13	3.33
2536	22751	8.510243	AATACATTCATAGACTTTGCATCACA	57.490	30.769	0.00	0.00	0.00	3.58
2610	22825	6.422776	TGTGAAGAGAAAAGTGAACAAGTC	57.577	37.500	0.00	0.00	0.00	3.01
2662	22877	4.237724	GAGTATTTCCTTGCAAAGTTGGC	58.762	43.478	0.00	0.00	44.25	4.52
2667	22882	5.122239	TGACATCGAGTATTTCCTTGCAAAG	59.878	40.000	0.00	0.00	45.69	2.77
2714	22929	9.444600	AGCTATAGAAGATTTACAAAAACCGAA	57.555	29.630	3.21	0.00	0.00	4.30
2741	22957	8.568676	TCCATCGGTTTATAGAATGACAAAAA	57.431	30.769	0.00	0.00	0.00	1.94
2752	22968	4.866508	TGTAGCCTCCATCGGTTTATAG	57.133	45.455	0.00	0.00	0.00	1.31
2766	22982	8.099537	CCATCAGTTATCATATCTTTGTAGCCT	58.900	37.037	0.00	0.00	0.00	4.58
2780	22997	2.311542	ACTTTGCCCCCATCAGTTATCA	59.688	45.455	0.00	0.00	0.00	2.15
2781	22998	3.018423	ACTTTGCCCCCATCAGTTATC	57.982	47.619	0.00	0.00	0.00	1.75
2786	23003	1.824852	GGTTTACTTTGCCCCCATCAG	59.175	52.381	0.00	0.00	0.00	2.90
2819	23040	8.757307	ATCACCCTCTCCTCCAAAAATATATA	57.243	34.615	0.00	0.00	0.00	0.86
2820	23041	7.654287	ATCACCCTCTCCTCCAAAAATATAT	57.346	36.000	0.00	0.00	0.00	0.86
2821	23042	7.794683	ACTATCACCCTCTCCTCCAAAAATATA	59.205	37.037	0.00	0.00	0.00	0.86
2886	23108	9.661563	ACAACAGATAATGAAATAGGTTTACGA	57.338	29.630	0.00	0.00	0.00	3.43
2894	23116	9.499585	CTGCTGAAACAACAGATAATGAAATAG	57.500	33.333	0.00	0.00	39.94	1.73
2910	23132	3.195610	AGATACGGTGATCTGCTGAAACA	59.804	43.478	0.00	0.00	34.79	2.83
2920	23142	4.157289	TCGGCCTAATTAGATACGGTGATC	59.843	45.833	14.28	0.00	0.00	2.92
2927	23149	4.081586	CCCTTCCTCGGCCTAATTAGATAC	60.082	50.000	14.28	3.14	0.00	2.24
2929	23151	2.907042	CCCTTCCTCGGCCTAATTAGAT	59.093	50.000	14.28	0.00	0.00	1.98
2954	23176	4.848357	TGGAAGAGAAAAGGCTCATAAGG	58.152	43.478	0.00	0.00	37.37	2.69
2956	23178	5.505181	ACTGGAAGAGAAAAGGCTCATAA	57.495	39.130	0.00	0.00	37.37	1.90
2957	23179	6.461648	CGATACTGGAAGAGAAAAGGCTCATA	60.462	42.308	0.00	0.00	37.37	2.15
2961	23183	3.515901	ACGATACTGGAAGAGAAAAGGCT	59.484	43.478	0.00	0.00	37.43	4.58
2972	23194	3.886505	ACCAAAAGCAAACGATACTGGAA	59.113	39.130	0.00	0.00	0.00	3.53
2980	23202	4.657436	AATACCAACCAAAAGCAAACGA	57.343	36.364	0.00	0.00	0.00	3.85
2996	23218	8.296713	ACAAACAATGTTGACATCACTAATACC	58.703	33.333	0.00	0.00	40.06	2.73
3034	23256	9.226606	TCTGAATGTACGGAACTTTTATTCATT	57.773	29.630	0.00	0.00	33.98	2.57

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.