Multiple sequence alignment - TraesCS2B01G524200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G524200 chr2B 100.000 3809 0 0 1 3809 718600567 718604375 0.000000e+00 7035.0
1 TraesCS2B01G524200 chr2B 87.255 612 67 6 1488 2099 718638886 718639486 0.000000e+00 688.0
2 TraesCS2B01G524200 chr2B 82.249 338 43 8 2836 3157 718650103 718650439 3.750000e-70 276.0
3 TraesCS2B01G524200 chr2B 93.233 133 8 1 2370 2501 23329463 23329331 1.080000e-45 195.0
4 TraesCS2B01G524200 chr2D 90.760 1407 96 18 1 1403 592631612 592632988 0.000000e+00 1847.0
5 TraesCS2B01G524200 chr2D 96.086 741 17 8 2489 3219 592634125 592634863 0.000000e+00 1197.0
6 TraesCS2B01G524200 chr2D 86.513 912 83 27 1480 2377 592633243 592634128 0.000000e+00 966.0
7 TraesCS2B01G524200 chr2D 91.841 478 3 3 3356 3809 592634999 592635464 5.370000e-178 634.0
8 TraesCS2B01G524200 chr2D 89.648 454 33 9 1 452 533818956 533818515 1.990000e-157 566.0
9 TraesCS2B01G524200 chr2D 89.268 205 4 2 3196 3396 592634894 592635084 1.370000e-59 241.0
10 TraesCS2B01G524200 chr2D 87.805 164 15 3 2041 2202 592781751 592781911 1.810000e-43 187.0
11 TraesCS2B01G524200 chr2D 97.727 44 1 0 2832 2875 592634434 592634477 4.080000e-10 76.8
12 TraesCS2B01G524200 chr2A 88.080 1401 111 30 1 1381 727188711 727190075 0.000000e+00 1611.0
13 TraesCS2B01G524200 chr2A 94.070 860 44 5 2499 3355 727191220 727192075 0.000000e+00 1299.0
14 TraesCS2B01G524200 chr2A 86.718 911 82 27 1480 2376 727190327 727191212 0.000000e+00 976.0
15 TraesCS2B01G524200 chr2A 90.749 454 29 8 1 452 576662354 576661912 9.110000e-166 593.0
16 TraesCS2B01G524200 chr2A 84.211 266 19 11 3397 3640 727192036 727192300 1.770000e-58 237.0
17 TraesCS2B01G524200 chr2A 97.727 44 1 0 2832 2875 727191508 727191551 4.080000e-10 76.8
18 TraesCS2B01G524200 chr1D 89.183 453 35 9 1 451 263327243 263326803 1.550000e-153 553.0
19 TraesCS2B01G524200 chrUn 88.546 454 37 10 1 452 25806959 25807399 1.560000e-148 536.0
20 TraesCS2B01G524200 chrUn 88.546 454 37 10 1 452 287200851 287201291 1.560000e-148 536.0
21 TraesCS2B01G524200 chrUn 88.521 453 37 10 1 451 213905948 213906387 5.600000e-148 534.0
22 TraesCS2B01G524200 chrUn 88.521 453 37 10 1 451 239203544 239203105 5.600000e-148 534.0
23 TraesCS2B01G524200 chrUn 95.726 117 5 0 2374 2490 286492285 286492401 5.020000e-44 189.0
24 TraesCS2B01G524200 chrUn 95.726 117 5 0 2374 2490 293138030 293138146 5.020000e-44 189.0
25 TraesCS2B01G524200 chr6B 88.917 397 28 9 1 394 441044117 441044500 3.440000e-130 475.0
26 TraesCS2B01G524200 chr3A 95.312 128 4 2 2366 2493 293041939 293042064 6.450000e-48 202.0
27 TraesCS2B01G524200 chr7B 95.833 120 5 0 2373 2492 190259156 190259275 1.080000e-45 195.0
28 TraesCS2B01G524200 chr5B 95.726 117 5 0 2376 2492 387898017 387898133 5.020000e-44 189.0
29 TraesCS2B01G524200 chr5D 94.958 119 6 0 2374 2492 345557955 345557837 1.810000e-43 187.0
30 TraesCS2B01G524200 chr3D 92.969 128 6 2 2363 2490 566906074 566905950 2.340000e-42 183.0
31 TraesCS2B01G524200 chr3B 92.857 126 8 1 2368 2493 416037685 416037561 8.410000e-42 182.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G524200 chr2B 718600567 718604375 3808 False 7035.000000 7035 100.0000 1 3809 1 chr2B.!!$F1 3808
1 TraesCS2B01G524200 chr2B 718638886 718639486 600 False 688.000000 688 87.2550 1488 2099 1 chr2B.!!$F2 611
2 TraesCS2B01G524200 chr2D 592631612 592635464 3852 False 826.966667 1847 92.0325 1 3809 6 chr2D.!!$F2 3808
3 TraesCS2B01G524200 chr2A 727188711 727192300 3589 False 839.960000 1611 90.1612 1 3640 5 chr2A.!!$F1 3639

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
520 525 0.108709 GTGTCTGCTGCTCCTCTCTG 60.109 60.0 0.0 0.0 0.00 3.35 F
2295 2544 0.106015 ACCAAAAGTTGCTCCCAGCT 60.106 50.0 0.0 0.0 42.97 4.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2469 2718 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.0 5.23 0.0 44.66 2.12 R
3703 4042 0.251297 TGTTTGGGTGATGCCTCTGG 60.251 55.0 0.00 0.0 37.43 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 1.391144 GCCGCAATTCACAAATTCAGC 59.609 47.619 0.00 0.00 32.69 4.26
35 36 3.493877 CCGCAATTCACAAATTCAGCAAA 59.506 39.130 0.00 0.00 32.69 3.68
82 83 3.410631 TCTAATCACGCAAGGGTTTCA 57.589 42.857 0.00 0.00 45.20 2.69
199 200 2.263540 GACGGCGCAAACCCTAGA 59.736 61.111 10.83 0.00 0.00 2.43
429 432 2.100631 GCCTTCACCACGTCCATCG 61.101 63.158 0.00 0.00 46.00 3.84
430 433 2.100631 CCTTCACCACGTCCATCGC 61.101 63.158 0.00 0.00 44.19 4.58
431 434 2.047655 TTCACCACGTCCATCGCC 60.048 61.111 0.00 0.00 44.19 5.54
432 435 3.599285 TTCACCACGTCCATCGCCC 62.599 63.158 0.00 0.00 44.19 6.13
460 464 2.582498 CTCGGCGCGAAACCCTAG 60.582 66.667 12.10 0.00 34.74 3.02
461 465 4.807039 TCGGCGCGAAACCCTAGC 62.807 66.667 12.10 0.00 31.06 3.42
518 523 1.217779 GGTGTCTGCTGCTCCTCTC 59.782 63.158 0.00 0.00 0.00 3.20
519 524 1.257055 GGTGTCTGCTGCTCCTCTCT 61.257 60.000 0.00 0.00 0.00 3.10
520 525 0.108709 GTGTCTGCTGCTCCTCTCTG 60.109 60.000 0.00 0.00 0.00 3.35
521 526 1.153588 GTCTGCTGCTCCTCTCTGC 60.154 63.158 0.00 0.00 0.00 4.26
522 527 1.305129 TCTGCTGCTCCTCTCTGCT 60.305 57.895 0.00 0.00 0.00 4.24
576 585 4.729868 TCCCCTCTTTTTCTTCCTTTCTG 58.270 43.478 0.00 0.00 0.00 3.02
636 645 3.775654 CTGTCGAGGGGGTGAGGC 61.776 72.222 0.00 0.00 0.00 4.70
650 664 3.316573 GAGGCTGAAGACCCCACCG 62.317 68.421 0.00 0.00 0.00 4.94
653 667 4.410400 CTGAAGACCCCACCGGCC 62.410 72.222 0.00 0.00 33.26 6.13
692 706 0.389948 GCTCGTGGACGGTTCAGATT 60.390 55.000 0.00 0.00 40.29 2.40
715 729 1.383799 CTTGTGGATCCTGGCCCAA 59.616 57.895 14.23 7.16 33.69 4.12
769 797 1.749638 ATCGGCCTCGTCTCGTCTT 60.750 57.895 0.00 0.00 37.69 3.01
860 888 2.558378 TCGAGGTACGAGTCTGTATGG 58.442 52.381 0.00 0.00 46.45 2.74
867 895 1.001974 ACGAGTCTGTATGGCTTGCAA 59.998 47.619 0.00 0.00 35.20 4.08
868 896 1.662629 CGAGTCTGTATGGCTTGCAAG 59.337 52.381 22.44 22.44 0.00 4.01
874 902 3.076621 CTGTATGGCTTGCAAGTTCTCA 58.923 45.455 26.55 18.90 0.00 3.27
962 990 2.322339 ACCCTAGTTCCTCTCGGTTT 57.678 50.000 0.00 0.00 0.00 3.27
990 1018 2.032549 CGATTTATTGGGCGCAGAAGAG 60.033 50.000 10.83 0.00 0.00 2.85
1128 1156 0.971447 AGGGGTCGTACCAGCTCTTC 60.971 60.000 6.41 0.00 41.02 2.87
1134 1162 4.143333 TACCAGCTCTTCGGCGCC 62.143 66.667 19.07 19.07 37.29 6.53
1149 1177 1.429148 GCGCCACCTACACAGTATGC 61.429 60.000 0.00 0.00 42.53 3.14
1154 1182 2.355108 CCACCTACACAGTATGCTGCTT 60.355 50.000 11.09 0.29 46.30 3.91
1158 1186 4.651503 ACCTACACAGTATGCTGCTTATCT 59.348 41.667 11.09 0.00 46.30 1.98
1160 1188 3.711086 ACACAGTATGCTGCTTATCTCG 58.289 45.455 11.09 0.00 46.30 4.04
1223 1251 2.777094 GGCTTTGCCTATCTGATCTCC 58.223 52.381 0.73 0.00 46.69 3.71
1299 1327 0.694444 AAGGGCCCAGATATCGGTGT 60.694 55.000 27.56 0.00 0.00 4.16
1309 1337 4.038522 CCAGATATCGGTGTGTCTCATTCT 59.961 45.833 2.10 0.00 0.00 2.40
1311 1339 5.689514 CAGATATCGGTGTGTCTCATTCTTC 59.310 44.000 0.00 0.00 0.00 2.87
1317 1345 2.665537 GTGTGTCTCATTCTTCTCAGCG 59.334 50.000 0.00 0.00 0.00 5.18
1318 1346 2.297315 TGTGTCTCATTCTTCTCAGCGT 59.703 45.455 0.00 0.00 0.00 5.07
1319 1347 2.665537 GTGTCTCATTCTTCTCAGCGTG 59.334 50.000 0.00 0.00 0.00 5.34
1321 1349 3.506067 TGTCTCATTCTTCTCAGCGTGTA 59.494 43.478 0.00 0.00 0.00 2.90
1323 1351 5.105752 GTCTCATTCTTCTCAGCGTGTATT 58.894 41.667 0.00 0.00 0.00 1.89
1325 1353 5.578336 TCTCATTCTTCTCAGCGTGTATTTG 59.422 40.000 0.00 0.00 0.00 2.32
1327 1355 3.678056 TCTTCTCAGCGTGTATTTGGT 57.322 42.857 0.00 0.00 0.00 3.67
1328 1356 4.002906 TCTTCTCAGCGTGTATTTGGTT 57.997 40.909 0.00 0.00 0.00 3.67
1329 1357 5.142061 TCTTCTCAGCGTGTATTTGGTTA 57.858 39.130 0.00 0.00 0.00 2.85
1330 1358 5.730550 TCTTCTCAGCGTGTATTTGGTTAT 58.269 37.500 0.00 0.00 0.00 1.89
1331 1359 5.810587 TCTTCTCAGCGTGTATTTGGTTATC 59.189 40.000 0.00 0.00 0.00 1.75
1332 1360 5.339008 TCTCAGCGTGTATTTGGTTATCT 57.661 39.130 0.00 0.00 0.00 1.98
1333 1361 6.459670 TCTCAGCGTGTATTTGGTTATCTA 57.540 37.500 0.00 0.00 0.00 1.98
1334 1362 6.270815 TCTCAGCGTGTATTTGGTTATCTAC 58.729 40.000 0.00 0.00 0.00 2.59
1342 1373 8.965172 CGTGTATTTGGTTATCTACTGATGTAC 58.035 37.037 0.00 0.00 34.32 2.90
1350 1381 8.418662 TGGTTATCTACTGATGTACAATGTACC 58.581 37.037 19.53 6.93 34.32 3.34
1364 1395 7.940137 TGTACAATGTACCTCAAATGGTTACTT 59.060 33.333 19.53 0.00 41.22 2.24
1371 1402 6.575162 ACCTCAAATGGTTACTTTGTGATC 57.425 37.500 0.00 0.00 36.89 2.92
1388 1420 9.177608 CTTTGTGATCTGTTAAATGATTAGGGA 57.822 33.333 0.00 0.00 0.00 4.20
1390 1422 8.681486 TGTGATCTGTTAAATGATTAGGGATG 57.319 34.615 0.00 0.00 0.00 3.51
1392 1424 6.716628 TGATCTGTTAAATGATTAGGGATGCC 59.283 38.462 0.00 0.00 0.00 4.40
1397 1429 1.338107 ATGATTAGGGATGCCGTCGA 58.662 50.000 0.00 0.00 0.00 4.20
1403 1435 1.379527 AGGGATGCCGTCGAAAATTC 58.620 50.000 0.00 0.00 0.00 2.17
1404 1436 1.091537 GGGATGCCGTCGAAAATTCA 58.908 50.000 0.00 0.00 0.00 2.57
1405 1437 1.202143 GGGATGCCGTCGAAAATTCAC 60.202 52.381 0.00 0.00 0.00 3.18
1406 1438 1.737793 GGATGCCGTCGAAAATTCACT 59.262 47.619 0.00 0.00 0.00 3.41
1407 1439 2.161609 GGATGCCGTCGAAAATTCACTT 59.838 45.455 0.00 0.00 0.00 3.16
1409 1441 1.327507 GCCGTCGAAAATTCACTTGC 58.672 50.000 0.00 0.00 0.00 4.01
1411 1443 2.856720 GCCGTCGAAAATTCACTTGCAA 60.857 45.455 0.00 0.00 0.00 4.08
1412 1444 3.564511 CCGTCGAAAATTCACTTGCAAT 58.435 40.909 0.00 0.00 0.00 3.56
1413 1445 3.980775 CCGTCGAAAATTCACTTGCAATT 59.019 39.130 0.00 0.00 0.00 2.32
1414 1446 4.444056 CCGTCGAAAATTCACTTGCAATTT 59.556 37.500 0.00 0.00 35.40 1.82
1415 1447 5.051106 CCGTCGAAAATTCACTTGCAATTTT 60.051 36.000 0.00 3.27 43.15 1.82
1417 1449 6.291532 CGTCGAAAATTCACTTGCAATTTTGA 60.292 34.615 11.38 8.96 41.43 2.69
1418 1450 7.566709 GTCGAAAATTCACTTGCAATTTTGAT 58.433 30.769 11.38 0.00 41.43 2.57
1419 1451 8.063630 GTCGAAAATTCACTTGCAATTTTGATT 58.936 29.630 11.38 4.17 41.43 2.57
1423 1657 8.611654 AAATTCACTTGCAATTTTGATTAGCT 57.388 26.923 0.00 0.00 30.74 3.32
1424 1658 7.591006 ATTCACTTGCAATTTTGATTAGCTG 57.409 32.000 0.00 0.00 0.00 4.24
1427 1661 6.864685 TCACTTGCAATTTTGATTAGCTGAAG 59.135 34.615 0.00 0.00 0.00 3.02
1428 1662 6.643770 CACTTGCAATTTTGATTAGCTGAAGT 59.356 34.615 0.00 0.00 0.00 3.01
1431 1665 9.362539 CTTGCAATTTTGATTAGCTGAAGTTAT 57.637 29.630 0.00 0.00 0.00 1.89
1456 1690 7.298507 TGTTTATTGTTAGTACCTCGAATGC 57.701 36.000 0.00 0.00 0.00 3.56
1457 1691 6.874664 TGTTTATTGTTAGTACCTCGAATGCA 59.125 34.615 0.00 0.00 0.00 3.96
1458 1692 7.064134 TGTTTATTGTTAGTACCTCGAATGCAG 59.936 37.037 0.00 0.00 0.00 4.41
1459 1693 4.794278 TTGTTAGTACCTCGAATGCAGA 57.206 40.909 0.00 0.00 0.00 4.26
1460 1694 4.371855 TGTTAGTACCTCGAATGCAGAG 57.628 45.455 0.00 0.00 35.60 3.35
1461 1695 3.762288 TGTTAGTACCTCGAATGCAGAGT 59.238 43.478 0.00 0.00 34.08 3.24
1462 1696 4.945543 TGTTAGTACCTCGAATGCAGAGTA 59.054 41.667 0.00 0.00 34.08 2.59
1463 1697 5.066117 TGTTAGTACCTCGAATGCAGAGTAG 59.934 44.000 0.00 0.00 34.08 2.57
1464 1698 2.359531 AGTACCTCGAATGCAGAGTAGC 59.640 50.000 0.00 0.00 34.08 3.58
1465 1699 1.479709 ACCTCGAATGCAGAGTAGCT 58.520 50.000 0.00 0.00 34.08 3.32
1467 1701 1.135915 CCTCGAATGCAGAGTAGCTGT 59.864 52.381 0.00 0.00 46.62 4.40
1468 1702 2.417924 CCTCGAATGCAGAGTAGCTGTT 60.418 50.000 0.00 0.00 46.62 3.16
1469 1703 3.257393 CTCGAATGCAGAGTAGCTGTTT 58.743 45.455 0.00 0.00 46.62 2.83
1470 1704 3.254060 TCGAATGCAGAGTAGCTGTTTC 58.746 45.455 0.00 0.00 46.62 2.78
1471 1705 3.056536 TCGAATGCAGAGTAGCTGTTTCT 60.057 43.478 0.00 0.00 46.62 2.52
1472 1706 3.061831 CGAATGCAGAGTAGCTGTTTCTG 59.938 47.826 15.58 15.58 46.62 3.02
1473 1707 3.692257 ATGCAGAGTAGCTGTTTCTGT 57.308 42.857 18.94 4.45 46.62 3.41
1474 1708 3.475566 TGCAGAGTAGCTGTTTCTGTT 57.524 42.857 18.94 0.00 46.62 3.16
1475 1709 4.600692 TGCAGAGTAGCTGTTTCTGTTA 57.399 40.909 18.94 10.27 46.62 2.41
1476 1710 4.307432 TGCAGAGTAGCTGTTTCTGTTAC 58.693 43.478 18.94 8.45 46.62 2.50
1477 1711 4.039245 TGCAGAGTAGCTGTTTCTGTTACT 59.961 41.667 18.94 3.35 46.62 2.24
1478 1712 4.991687 GCAGAGTAGCTGTTTCTGTTACTT 59.008 41.667 18.94 0.00 46.62 2.24
1485 1719 2.293399 CTGTTTCTGTTACTTGTGGGCC 59.707 50.000 0.00 0.00 0.00 5.80
1490 1724 0.322098 TGTTACTTGTGGGCCCGATG 60.322 55.000 19.37 11.03 0.00 3.84
1500 1734 0.892063 GGGCCCGATGTTTGCTAAAA 59.108 50.000 5.69 0.00 0.00 1.52
1501 1735 1.273886 GGGCCCGATGTTTGCTAAAAA 59.726 47.619 5.69 0.00 0.00 1.94
1502 1736 2.333926 GGCCCGATGTTTGCTAAAAAC 58.666 47.619 0.00 0.00 0.00 2.43
1503 1737 2.029380 GGCCCGATGTTTGCTAAAAACT 60.029 45.455 0.00 0.00 0.00 2.66
1504 1738 2.986479 GCCCGATGTTTGCTAAAAACTG 59.014 45.455 2.96 0.00 0.00 3.16
1505 1739 2.986479 CCCGATGTTTGCTAAAAACTGC 59.014 45.455 2.96 0.00 0.00 4.40
1506 1740 3.305335 CCCGATGTTTGCTAAAAACTGCT 60.305 43.478 2.96 0.00 0.00 4.24
1508 1742 5.457140 CCGATGTTTGCTAAAAACTGCTTA 58.543 37.500 2.96 0.00 0.00 3.09
1509 1743 5.918011 CCGATGTTTGCTAAAAACTGCTTAA 59.082 36.000 2.96 0.00 0.00 1.85
1596 1830 4.608948 AGCGGATATTTTAGTGGAGAGG 57.391 45.455 0.00 0.00 0.00 3.69
1635 1869 3.319122 GCAGGGTTGAAGACATTTCACTT 59.681 43.478 0.00 0.00 0.00 3.16
1692 1926 0.905357 GACCACACCAGGTATGAGCT 59.095 55.000 0.00 0.00 43.38 4.09
1700 1934 4.775780 ACACCAGGTATGAGCTACAGTTTA 59.224 41.667 0.00 0.00 31.44 2.01
1708 1942 9.765795 AGGTATGAGCTACAGTTTATATTTCAC 57.234 33.333 0.00 0.00 31.44 3.18
1813 2047 1.063174 CTTGAGAGCCAAATACAGCGC 59.937 52.381 0.00 0.00 33.76 5.92
1877 2111 1.609208 TTCTTCAGCTTGACTTGGCC 58.391 50.000 0.00 0.00 0.00 5.36
1879 2113 1.580845 CTTCAGCTTGACTTGGCCGG 61.581 60.000 0.00 0.00 0.00 6.13
1883 2126 0.109723 AGCTTGACTTGGCCGGTAAA 59.890 50.000 1.90 0.00 0.00 2.01
1918 2161 6.425504 GTTGATCTTCCATTCGACATGATTC 58.574 40.000 0.00 0.00 0.00 2.52
1923 2166 6.820335 TCTTCCATTCGACATGATTCATAGT 58.180 36.000 0.00 0.54 0.00 2.12
1931 2174 6.218746 TCGACATGATTCATAGTCAAGGATG 58.781 40.000 19.78 9.47 0.00 3.51
1932 2175 5.107182 CGACATGATTCATAGTCAAGGATGC 60.107 44.000 19.78 0.00 0.00 3.91
1958 2201 0.322997 AGCTCTGCGTCAGTACCTCT 60.323 55.000 6.72 0.00 32.61 3.69
1971 2214 7.310664 CGTCAGTACCTCTTTACAGAATACAA 58.689 38.462 0.00 0.00 0.00 2.41
1972 2215 7.811236 CGTCAGTACCTCTTTACAGAATACAAA 59.189 37.037 0.00 0.00 0.00 2.83
2010 2253 7.080353 AGCTTTATTAGATTACCTGGTCCCTA 58.920 38.462 0.63 0.51 0.00 3.53
2017 2260 6.997942 AGATTACCTGGTCCCTAGAAATAC 57.002 41.667 0.63 0.00 0.00 1.89
2049 2292 9.679661 TGTACACTGAAACAACCATCATATATT 57.320 29.630 0.00 0.00 0.00 1.28
2077 2320 6.238648 ACACTTGTAATTAAGTCAAGGGGAG 58.761 40.000 16.60 8.18 44.03 4.30
2078 2321 6.043938 ACACTTGTAATTAAGTCAAGGGGAGA 59.956 38.462 16.60 0.00 44.03 3.71
2108 2351 8.662781 TTGTGTTAATAATCATGCTAGTCTCC 57.337 34.615 0.00 0.00 0.00 3.71
2123 2369 7.512130 TGCTAGTCTCCAATCATCATGTTATT 58.488 34.615 0.00 0.00 0.00 1.40
2133 2379 9.457436 CCAATCATCATGTTATTCTATCATCCA 57.543 33.333 0.00 0.00 0.00 3.41
2136 2382 9.848710 ATCATCATGTTATTCTATCATCCATCC 57.151 33.333 0.00 0.00 0.00 3.51
2138 2384 9.628500 CATCATGTTATTCTATCATCCATCCAT 57.372 33.333 0.00 0.00 0.00 3.41
2139 2385 9.628500 ATCATGTTATTCTATCATCCATCCATG 57.372 33.333 0.00 0.00 0.00 3.66
2140 2386 8.608598 TCATGTTATTCTATCATCCATCCATGT 58.391 33.333 0.00 0.00 0.00 3.21
2141 2387 9.895138 CATGTTATTCTATCATCCATCCATGTA 57.105 33.333 0.00 0.00 0.00 2.29
2149 2395 8.481314 TCTATCATCCATCCATGTATTAGAAGC 58.519 37.037 0.00 0.00 0.00 3.86
2150 2396 6.438186 TCATCCATCCATGTATTAGAAGCA 57.562 37.500 0.00 0.00 0.00 3.91
2151 2397 6.233434 TCATCCATCCATGTATTAGAAGCAC 58.767 40.000 0.00 0.00 0.00 4.40
2152 2398 5.628797 TCCATCCATGTATTAGAAGCACA 57.371 39.130 0.00 0.00 0.00 4.57
2153 2399 6.000246 TCCATCCATGTATTAGAAGCACAA 58.000 37.500 0.00 0.00 0.00 3.33
2157 2403 8.849168 CCATCCATGTATTAGAAGCACAAAATA 58.151 33.333 0.00 0.00 0.00 1.40
2158 2404 9.669353 CATCCATGTATTAGAAGCACAAAATAC 57.331 33.333 0.00 0.00 36.04 1.89
2171 2417 5.476945 AGCACAAAATACTTAACCAGGAAGG 59.523 40.000 0.00 0.00 45.67 3.46
2172 2418 5.709966 CACAAAATACTTAACCAGGAAGGC 58.290 41.667 0.00 0.00 43.14 4.35
2173 2419 4.770531 ACAAAATACTTAACCAGGAAGGCC 59.229 41.667 0.00 0.00 43.14 5.19
2174 2420 3.664551 AATACTTAACCAGGAAGGCCC 57.335 47.619 0.00 0.00 43.14 5.80
2176 2422 1.456919 ACTTAACCAGGAAGGCCCTT 58.543 50.000 0.00 0.00 44.85 3.95
2177 2423 1.075536 ACTTAACCAGGAAGGCCCTTG 59.924 52.381 0.00 0.00 44.85 3.61
2178 2424 1.075536 CTTAACCAGGAAGGCCCTTGT 59.924 52.381 0.00 0.00 44.85 3.16
2180 2426 2.036256 CCAGGAAGGCCCTTGTGG 59.964 66.667 0.00 3.62 44.85 4.17
2181 2427 2.845345 CCAGGAAGGCCCTTGTGGT 61.845 63.158 0.00 0.00 44.85 4.16
2184 2430 0.264657 AGGAAGGCCCTTGTGGTTTT 59.735 50.000 0.00 0.00 44.85 2.43
2188 2434 3.306710 GGAAGGCCCTTGTGGTTTTTATG 60.307 47.826 0.00 0.00 36.04 1.90
2194 2440 6.098266 AGGCCCTTGTGGTTTTTATGATATTC 59.902 38.462 0.00 0.00 36.04 1.75
2220 2469 6.795098 TTTTTGTGTCGCTCATACACTAAT 57.205 33.333 7.75 0.00 45.95 1.73
2229 2478 4.509230 CGCTCATACACTAATTGCATGTCT 59.491 41.667 0.00 0.00 31.55 3.41
2232 2481 6.292757 GCTCATACACTAATTGCATGTCTGAG 60.293 42.308 20.24 20.24 44.35 3.35
2252 2501 5.273208 TGAGGTAGAGAAAGCTCAGGTTAT 58.727 41.667 1.86 0.00 46.20 1.89
2253 2502 6.432581 TGAGGTAGAGAAAGCTCAGGTTATA 58.567 40.000 1.86 0.00 46.20 0.98
2254 2503 6.547880 TGAGGTAGAGAAAGCTCAGGTTATAG 59.452 42.308 1.86 0.00 46.20 1.31
2255 2504 5.303333 AGGTAGAGAAAGCTCAGGTTATAGC 59.697 44.000 0.00 0.00 43.81 2.97
2262 2511 2.682836 GCTCAGGTTATAGCTAGCTGC 58.317 52.381 27.68 14.38 40.12 5.25
2295 2544 0.106015 ACCAAAAGTTGCTCCCAGCT 60.106 50.000 0.00 0.00 42.97 4.24
2297 2546 2.225117 ACCAAAAGTTGCTCCCAGCTAT 60.225 45.455 0.00 0.00 42.97 2.97
2320 2569 2.797837 TGCTGCTGCAGTTTGAACT 58.202 47.368 28.50 0.00 45.31 3.01
2324 2573 3.318839 TGCTGCTGCAGTTTGAACTATTT 59.681 39.130 28.50 0.00 45.31 1.40
2364 2613 7.882791 ACTTGGTAACTGATGATGTTGTTGATA 59.117 33.333 0.00 0.00 37.61 2.15
2367 2616 8.046107 TGGTAACTGATGATGTTGTTGATATCA 58.954 33.333 0.00 0.00 37.63 2.15
2380 2629 8.946085 TGTTGTTGATATCAAATCAAGTACTCC 58.054 33.333 19.55 8.28 38.54 3.85
2381 2630 8.398665 GTTGTTGATATCAAATCAAGTACTCCC 58.601 37.037 19.55 3.66 38.54 4.30
2382 2631 7.861629 TGTTGATATCAAATCAAGTACTCCCT 58.138 34.615 19.55 0.00 38.54 4.20
2383 2632 7.987458 TGTTGATATCAAATCAAGTACTCCCTC 59.013 37.037 19.55 2.65 38.54 4.30
2384 2633 7.067496 TGATATCAAATCAAGTACTCCCTCC 57.933 40.000 1.98 0.00 0.00 4.30
2385 2634 6.846505 TGATATCAAATCAAGTACTCCCTCCT 59.153 38.462 1.98 0.00 0.00 3.69
2386 2635 7.348274 TGATATCAAATCAAGTACTCCCTCCTT 59.652 37.037 1.98 0.00 0.00 3.36
2387 2636 5.422214 TCAAATCAAGTACTCCCTCCTTC 57.578 43.478 0.00 0.00 0.00 3.46
2388 2637 4.225267 TCAAATCAAGTACTCCCTCCTTCC 59.775 45.833 0.00 0.00 0.00 3.46
2389 2638 3.491766 ATCAAGTACTCCCTCCTTCCA 57.508 47.619 0.00 0.00 0.00 3.53
2390 2639 3.269592 TCAAGTACTCCCTCCTTCCAA 57.730 47.619 0.00 0.00 0.00 3.53
2391 2640 3.593942 TCAAGTACTCCCTCCTTCCAAA 58.406 45.455 0.00 0.00 0.00 3.28
2392 2641 3.977999 TCAAGTACTCCCTCCTTCCAAAA 59.022 43.478 0.00 0.00 0.00 2.44
2393 2642 4.414182 TCAAGTACTCCCTCCTTCCAAAAA 59.586 41.667 0.00 0.00 0.00 1.94
2394 2643 5.074515 TCAAGTACTCCCTCCTTCCAAAAAT 59.925 40.000 0.00 0.00 0.00 1.82
2395 2644 6.273730 TCAAGTACTCCCTCCTTCCAAAAATA 59.726 38.462 0.00 0.00 0.00 1.40
2396 2645 6.063496 AGTACTCCCTCCTTCCAAAAATAC 57.937 41.667 0.00 0.00 0.00 1.89
2397 2646 5.791141 AGTACTCCCTCCTTCCAAAAATACT 59.209 40.000 0.00 0.00 0.00 2.12
2398 2647 5.600669 ACTCCCTCCTTCCAAAAATACTT 57.399 39.130 0.00 0.00 0.00 2.24
2399 2648 5.325239 ACTCCCTCCTTCCAAAAATACTTG 58.675 41.667 0.00 0.00 0.00 3.16
2400 2649 5.162980 ACTCCCTCCTTCCAAAAATACTTGT 60.163 40.000 0.00 0.00 0.00 3.16
2401 2650 5.321927 TCCCTCCTTCCAAAAATACTTGTC 58.678 41.667 0.00 0.00 0.00 3.18
2402 2651 4.156008 CCCTCCTTCCAAAAATACTTGTCG 59.844 45.833 0.00 0.00 0.00 4.35
2403 2652 4.156008 CCTCCTTCCAAAAATACTTGTCGG 59.844 45.833 0.00 0.00 0.00 4.79
2404 2653 4.975631 TCCTTCCAAAAATACTTGTCGGA 58.024 39.130 0.00 0.00 0.00 4.55
2405 2654 5.001232 TCCTTCCAAAAATACTTGTCGGAG 58.999 41.667 0.00 0.00 0.00 4.63
2406 2655 5.001232 CCTTCCAAAAATACTTGTCGGAGA 58.999 41.667 0.00 0.00 0.00 3.71
2407 2656 5.472137 CCTTCCAAAAATACTTGTCGGAGAA 59.528 40.000 0.00 0.00 39.69 2.87
2408 2657 6.016610 CCTTCCAAAAATACTTGTCGGAGAAA 60.017 38.462 0.00 0.00 39.69 2.52
2409 2658 7.309194 CCTTCCAAAAATACTTGTCGGAGAAAT 60.309 37.037 0.00 0.00 39.69 2.17
2410 2659 6.908825 TCCAAAAATACTTGTCGGAGAAATG 58.091 36.000 0.00 0.00 39.69 2.32
2411 2660 6.712998 TCCAAAAATACTTGTCGGAGAAATGA 59.287 34.615 0.00 0.00 39.69 2.57
2412 2661 7.023575 CCAAAAATACTTGTCGGAGAAATGAG 58.976 38.462 0.00 0.00 39.69 2.90
2413 2662 7.308589 CCAAAAATACTTGTCGGAGAAATGAGT 60.309 37.037 0.00 0.00 39.69 3.41
2414 2663 6.727824 AAATACTTGTCGGAGAAATGAGTG 57.272 37.500 0.00 0.00 39.69 3.51
2415 2664 3.753294 ACTTGTCGGAGAAATGAGTGT 57.247 42.857 0.00 0.00 39.69 3.55
2416 2665 4.866508 ACTTGTCGGAGAAATGAGTGTA 57.133 40.909 0.00 0.00 39.69 2.90
2417 2666 4.557205 ACTTGTCGGAGAAATGAGTGTAC 58.443 43.478 0.00 0.00 39.69 2.90
2418 2667 3.587797 TGTCGGAGAAATGAGTGTACC 57.412 47.619 0.00 0.00 39.69 3.34
2419 2668 3.162666 TGTCGGAGAAATGAGTGTACCT 58.837 45.455 0.00 0.00 39.69 3.08
2420 2669 4.338012 TGTCGGAGAAATGAGTGTACCTA 58.662 43.478 0.00 0.00 39.69 3.08
2421 2670 4.398358 TGTCGGAGAAATGAGTGTACCTAG 59.602 45.833 0.00 0.00 39.69 3.02
2422 2671 4.639310 GTCGGAGAAATGAGTGTACCTAGA 59.361 45.833 0.00 0.00 39.69 2.43
2423 2672 4.639310 TCGGAGAAATGAGTGTACCTAGAC 59.361 45.833 0.00 0.00 0.00 2.59
2424 2673 4.496010 CGGAGAAATGAGTGTACCTAGACG 60.496 50.000 0.00 0.00 0.00 4.18
2425 2674 4.398673 GGAGAAATGAGTGTACCTAGACGT 59.601 45.833 0.00 0.00 0.00 4.34
2426 2675 5.587844 GGAGAAATGAGTGTACCTAGACGTA 59.412 44.000 0.00 0.00 0.00 3.57
2427 2676 6.262720 GGAGAAATGAGTGTACCTAGACGTAT 59.737 42.308 0.00 0.00 0.00 3.06
2428 2677 7.201803 GGAGAAATGAGTGTACCTAGACGTATT 60.202 40.741 0.00 0.00 0.00 1.89
2429 2678 8.064336 AGAAATGAGTGTACCTAGACGTATTT 57.936 34.615 0.00 0.00 0.00 1.40
2430 2679 8.529476 AGAAATGAGTGTACCTAGACGTATTTT 58.471 33.333 0.00 0.00 0.00 1.82
2431 2680 9.793252 GAAATGAGTGTACCTAGACGTATTTTA 57.207 33.333 0.00 0.00 0.00 1.52
2432 2681 9.798994 AAATGAGTGTACCTAGACGTATTTTAG 57.201 33.333 0.00 0.00 0.00 1.85
2433 2682 7.928307 TGAGTGTACCTAGACGTATTTTAGT 57.072 36.000 0.00 0.00 0.00 2.24
2434 2683 8.340618 TGAGTGTACCTAGACGTATTTTAGTT 57.659 34.615 0.00 0.00 0.00 2.24
2435 2684 8.454106 TGAGTGTACCTAGACGTATTTTAGTTC 58.546 37.037 0.00 0.00 0.00 3.01
2436 2685 8.572855 AGTGTACCTAGACGTATTTTAGTTCT 57.427 34.615 0.00 0.00 0.00 3.01
2437 2686 9.672673 AGTGTACCTAGACGTATTTTAGTTCTA 57.327 33.333 0.00 0.00 0.00 2.10
2438 2687 9.928236 GTGTACCTAGACGTATTTTAGTTCTAG 57.072 37.037 0.00 0.00 0.00 2.43
2439 2688 9.890629 TGTACCTAGACGTATTTTAGTTCTAGA 57.109 33.333 5.67 0.00 0.00 2.43
2446 2695 8.628280 AGACGTATTTTAGTTCTAGATACACCC 58.372 37.037 0.00 0.00 0.00 4.61
2447 2696 8.297470 ACGTATTTTAGTTCTAGATACACCCA 57.703 34.615 0.00 0.00 0.00 4.51
2448 2697 8.921205 ACGTATTTTAGTTCTAGATACACCCAT 58.079 33.333 0.00 0.00 0.00 4.00
2449 2698 9.760077 CGTATTTTAGTTCTAGATACACCCATT 57.240 33.333 0.00 0.00 0.00 3.16
2457 2706 8.778059 AGTTCTAGATACACCCATTTTTATCCA 58.222 33.333 0.00 0.00 0.00 3.41
2458 2707 9.574516 GTTCTAGATACACCCATTTTTATCCAT 57.425 33.333 0.00 0.00 0.00 3.41
2463 2712 9.136323 AGATACACCCATTTTTATCCATTTCTC 57.864 33.333 0.00 0.00 0.00 2.87
2464 2713 6.544928 ACACCCATTTTTATCCATTTCTCC 57.455 37.500 0.00 0.00 0.00 3.71
2465 2714 5.127031 ACACCCATTTTTATCCATTTCTCCG 59.873 40.000 0.00 0.00 0.00 4.63
2466 2715 5.359576 CACCCATTTTTATCCATTTCTCCGA 59.640 40.000 0.00 0.00 0.00 4.55
2467 2716 5.359860 ACCCATTTTTATCCATTTCTCCGAC 59.640 40.000 0.00 0.00 0.00 4.79
2468 2717 5.359576 CCCATTTTTATCCATTTCTCCGACA 59.640 40.000 0.00 0.00 0.00 4.35
2469 2718 6.127479 CCCATTTTTATCCATTTCTCCGACAA 60.127 38.462 0.00 0.00 0.00 3.18
2470 2719 6.974622 CCATTTTTATCCATTTCTCCGACAAG 59.025 38.462 0.00 0.00 0.00 3.16
2471 2720 7.362920 CCATTTTTATCCATTTCTCCGACAAGT 60.363 37.037 0.00 0.00 0.00 3.16
2472 2721 8.673711 CATTTTTATCCATTTCTCCGACAAGTA 58.326 33.333 0.00 0.00 0.00 2.24
2473 2722 8.801882 TTTTTATCCATTTCTCCGACAAGTAT 57.198 30.769 0.00 0.00 0.00 2.12
2474 2723 8.801882 TTTTATCCATTTCTCCGACAAGTATT 57.198 30.769 0.00 0.00 0.00 1.89
2475 2724 8.801882 TTTATCCATTTCTCCGACAAGTATTT 57.198 30.769 0.00 0.00 0.00 1.40
2476 2725 6.927294 ATCCATTTCTCCGACAAGTATTTC 57.073 37.500 0.00 0.00 0.00 2.17
2477 2726 5.183228 TCCATTTCTCCGACAAGTATTTCC 58.817 41.667 0.00 0.00 0.00 3.13
2478 2727 4.034048 CCATTTCTCCGACAAGTATTTCCG 59.966 45.833 0.00 0.00 0.00 4.30
2479 2728 2.953466 TCTCCGACAAGTATTTCCGG 57.047 50.000 0.00 0.00 41.36 5.14
2480 2729 2.449464 TCTCCGACAAGTATTTCCGGA 58.551 47.619 0.00 0.00 45.74 5.14
2481 2730 2.165030 TCTCCGACAAGTATTTCCGGAC 59.835 50.000 1.83 0.00 43.47 4.79
2482 2731 1.135315 TCCGACAAGTATTTCCGGACG 60.135 52.381 1.83 0.00 43.47 4.79
2483 2732 1.274596 CGACAAGTATTTCCGGACGG 58.725 55.000 1.83 3.96 0.00 4.79
2484 2733 1.135315 CGACAAGTATTTCCGGACGGA 60.135 52.381 1.83 9.76 43.52 4.69
2485 2734 2.537401 GACAAGTATTTCCGGACGGAG 58.463 52.381 13.64 3.15 46.06 4.63
2486 2735 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
2487 2736 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
2488 2737 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
2489 2738 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
2490 2739 0.032813 TATTTCCGGACGGAGGGAGT 60.033 55.000 13.64 0.00 46.06 3.85
2491 2740 0.032813 ATTTCCGGACGGAGGGAGTA 60.033 55.000 13.64 0.00 46.06 2.59
2492 2741 0.032813 TTTCCGGACGGAGGGAGTAT 60.033 55.000 13.64 0.00 46.06 2.12
2493 2742 0.754217 TTCCGGACGGAGGGAGTATG 60.754 60.000 13.64 0.00 46.06 2.39
2497 2746 1.470979 CGGACGGAGGGAGTATGTTTG 60.471 57.143 0.00 0.00 0.00 2.93
2545 2794 0.668401 GCAGCATTGGTTTGCCACTC 60.668 55.000 0.00 0.00 46.01 3.51
2548 2797 2.557924 CAGCATTGGTTTGCCACTCTTA 59.442 45.455 0.00 0.00 46.01 2.10
2608 2862 5.360714 ACATGTGTGTTTGTTTGGATCTTCT 59.639 36.000 0.00 0.00 34.01 2.85
2612 2866 6.183360 TGTGTGTTTGTTTGGATCTTCTAACC 60.183 38.462 0.00 0.00 0.00 2.85
2817 3074 2.501723 GACTCCAATGTGAAGGCCTCTA 59.498 50.000 5.23 0.00 0.00 2.43
2905 3162 5.185635 CCAAGTTGGCTGGATTAAGATGAAA 59.814 40.000 9.46 0.00 0.00 2.69
2961 3218 4.827835 TGCTCGTAGAAATAGCCTAGTGAT 59.172 41.667 0.00 0.00 35.33 3.06
3230 3542 2.276740 CCATCCCCAGCCCTGTTC 59.723 66.667 0.00 0.00 0.00 3.18
3231 3543 2.276740 CATCCCCAGCCCTGTTCC 59.723 66.667 0.00 0.00 0.00 3.62
3298 3611 1.284297 GCTTTCCGTTTGCCACATGC 61.284 55.000 0.00 0.00 41.77 4.06
3374 3691 3.878667 GCCCCTCTTCCCCATCCG 61.879 72.222 0.00 0.00 0.00 4.18
3375 3692 2.366972 CCCCTCTTCCCCATCCGT 60.367 66.667 0.00 0.00 0.00 4.69
3376 3693 2.001269 CCCCTCTTCCCCATCCGTT 61.001 63.158 0.00 0.00 0.00 4.44
3377 3694 1.571773 CCCCTCTTCCCCATCCGTTT 61.572 60.000 0.00 0.00 0.00 3.60
3378 3695 1.209621 CCCTCTTCCCCATCCGTTTA 58.790 55.000 0.00 0.00 0.00 2.01
3379 3696 1.562475 CCCTCTTCCCCATCCGTTTAA 59.438 52.381 0.00 0.00 0.00 1.52
3380 3697 2.640184 CCTCTTCCCCATCCGTTTAAC 58.360 52.381 0.00 0.00 0.00 2.01
3381 3698 2.640184 CTCTTCCCCATCCGTTTAACC 58.360 52.381 0.00 0.00 0.00 2.85
3382 3699 1.282738 TCTTCCCCATCCGTTTAACCC 59.717 52.381 0.00 0.00 0.00 4.11
3383 3700 0.332293 TTCCCCATCCGTTTAACCCC 59.668 55.000 0.00 0.00 0.00 4.95
3384 3701 1.076559 CCCCATCCGTTTAACCCCC 60.077 63.158 0.00 0.00 0.00 5.40
3398 3715 4.023137 CCCCCTTGCATCAACCTG 57.977 61.111 0.00 0.00 0.00 4.00
3399 3716 2.353610 CCCCCTTGCATCAACCTGC 61.354 63.158 0.00 0.00 42.62 4.85
3400 3717 2.353610 CCCCTTGCATCAACCTGCC 61.354 63.158 0.00 0.00 41.58 4.85
3401 3718 2.353610 CCCTTGCATCAACCTGCCC 61.354 63.158 0.00 0.00 41.58 5.36
3402 3719 2.353610 CCTTGCATCAACCTGCCCC 61.354 63.158 0.00 0.00 41.58 5.80
3403 3720 1.304713 CTTGCATCAACCTGCCCCT 60.305 57.895 0.00 0.00 41.58 4.79
3404 3721 1.304381 TTGCATCAACCTGCCCCTC 60.304 57.895 0.00 0.00 41.58 4.30
3405 3722 1.792757 TTGCATCAACCTGCCCCTCT 61.793 55.000 0.00 0.00 41.58 3.69
3406 3723 1.000396 GCATCAACCTGCCCCTCTT 60.000 57.895 0.00 0.00 36.10 2.85
3407 3724 1.034292 GCATCAACCTGCCCCTCTTC 61.034 60.000 0.00 0.00 36.10 2.87
3408 3725 0.394899 CATCAACCTGCCCCTCTTCC 60.395 60.000 0.00 0.00 0.00 3.46
3409 3726 1.575447 ATCAACCTGCCCCTCTTCCC 61.575 60.000 0.00 0.00 0.00 3.97
3410 3727 2.941583 AACCTGCCCCTCTTCCCC 60.942 66.667 0.00 0.00 0.00 4.81
3411 3728 3.829311 AACCTGCCCCTCTTCCCCA 62.829 63.158 0.00 0.00 0.00 4.96
3412 3729 2.697644 CCTGCCCCTCTTCCCCAT 60.698 66.667 0.00 0.00 0.00 4.00
3413 3730 2.761465 CCTGCCCCTCTTCCCCATC 61.761 68.421 0.00 0.00 0.00 3.51
3414 3731 2.696125 TGCCCCTCTTCCCCATCC 60.696 66.667 0.00 0.00 0.00 3.51
3415 3732 3.878667 GCCCCTCTTCCCCATCCG 61.879 72.222 0.00 0.00 0.00 4.18
3702 4041 6.767456 ACATGCAACAAGAAATTATCCCAAA 58.233 32.000 0.00 0.00 0.00 3.28
3703 4042 6.650390 ACATGCAACAAGAAATTATCCCAAAC 59.350 34.615 0.00 0.00 0.00 2.93
3704 4043 5.546526 TGCAACAAGAAATTATCCCAAACC 58.453 37.500 0.00 0.00 0.00 3.27
3705 4044 5.070981 TGCAACAAGAAATTATCCCAAACCA 59.929 36.000 0.00 0.00 0.00 3.67
3706 4045 5.639082 GCAACAAGAAATTATCCCAAACCAG 59.361 40.000 0.00 0.00 0.00 4.00
3707 4046 6.518200 GCAACAAGAAATTATCCCAAACCAGA 60.518 38.462 0.00 0.00 0.00 3.86
3708 4047 6.840780 ACAAGAAATTATCCCAAACCAGAG 57.159 37.500 0.00 0.00 0.00 3.35
3709 4048 5.716703 ACAAGAAATTATCCCAAACCAGAGG 59.283 40.000 0.00 0.00 0.00 3.69
3710 4049 4.281657 AGAAATTATCCCAAACCAGAGGC 58.718 43.478 0.00 0.00 0.00 4.70
3711 4050 3.756082 AATTATCCCAAACCAGAGGCA 57.244 42.857 0.00 0.00 0.00 4.75
3712 4051 3.979501 ATTATCCCAAACCAGAGGCAT 57.020 42.857 0.00 0.00 0.00 4.40
3713 4052 3.297134 TTATCCCAAACCAGAGGCATC 57.703 47.619 0.00 0.00 0.00 3.91
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 0.381089 TGTTTTACGGTGGCGGTTTG 59.619 50.000 0.00 0.00 0.00 2.93
35 36 2.255881 GCTGTTTTACGGTGGCGGT 61.256 57.895 0.00 0.00 0.00 5.68
82 83 1.141881 CTGTTAGATCCGCTGGCGT 59.858 57.895 13.84 0.00 37.81 5.68
199 200 3.382832 CCGTCCGTCTCTGCCCTT 61.383 66.667 0.00 0.00 0.00 3.95
498 502 2.527624 AGGAGCAGCAGACACCCA 60.528 61.111 0.00 0.00 0.00 4.51
605 614 5.338137 CCCCTCGACAGAACCTACTAATTTT 60.338 44.000 0.00 0.00 0.00 1.82
636 645 4.410400 GGCCGGTGGGGTCTTCAG 62.410 72.222 1.90 0.00 37.47 3.02
692 706 0.038166 GCCAGGATCCACAAGGTTCA 59.962 55.000 15.82 0.00 35.67 3.18
715 729 2.618368 CTTGGTTGGGACGGTGGTGT 62.618 60.000 0.00 0.00 0.00 4.16
851 879 3.077359 AGAACTTGCAAGCCATACAGAC 58.923 45.455 26.27 7.20 0.00 3.51
859 887 0.108945 GGCATGAGAACTTGCAAGCC 60.109 55.000 26.27 17.60 45.13 4.35
860 888 0.886563 AGGCATGAGAACTTGCAAGC 59.113 50.000 26.27 11.09 45.13 4.01
867 895 0.460987 GCGCAGTAGGCATGAGAACT 60.461 55.000 0.30 0.00 45.17 3.01
868 896 1.432270 GGCGCAGTAGGCATGAGAAC 61.432 60.000 10.83 0.00 45.17 3.01
874 902 1.144936 GAAGAGGCGCAGTAGGCAT 59.855 57.895 10.83 0.00 45.17 4.40
962 990 1.537348 CGCCCAATAAATCGAGACGGA 60.537 52.381 0.00 0.00 0.00 4.69
975 1003 1.407437 CCTTACTCTTCTGCGCCCAAT 60.407 52.381 4.18 0.00 0.00 3.16
990 1018 0.947244 CCATTGCCATCTCGCCTTAC 59.053 55.000 0.00 0.00 0.00 2.34
1128 1156 2.292794 ATACTGTGTAGGTGGCGCCG 62.293 60.000 23.90 6.26 43.70 6.46
1134 1162 2.680312 AGCAGCATACTGTGTAGGTG 57.320 50.000 0.00 0.00 46.30 4.00
1149 1177 2.722071 GGAGACGAACGAGATAAGCAG 58.278 52.381 0.14 0.00 0.00 4.24
1205 1233 4.952071 TCTGGAGATCAGATAGGCAAAG 57.048 45.455 0.00 0.00 46.71 2.77
1223 1251 1.303799 GGCAGCACCACATCTGTCTG 61.304 60.000 0.00 0.00 38.86 3.51
1299 1327 2.297315 ACACGCTGAGAAGAATGAGACA 59.703 45.455 0.00 0.00 0.00 3.41
1309 1337 5.730550 AGATAACCAAATACACGCTGAGAA 58.269 37.500 0.00 0.00 0.00 2.87
1311 1339 6.199154 CAGTAGATAACCAAATACACGCTGAG 59.801 42.308 0.00 0.00 0.00 3.35
1317 1345 9.811995 TGTACATCAGTAGATAACCAAATACAC 57.188 33.333 0.00 0.00 31.88 2.90
1321 1349 9.905713 ACATTGTACATCAGTAGATAACCAAAT 57.094 29.630 0.00 0.00 31.88 2.32
1323 1351 9.811995 GTACATTGTACATCAGTAGATAACCAA 57.188 33.333 19.65 0.00 31.88 3.67
1325 1353 8.639761 AGGTACATTGTACATCAGTAGATAACC 58.360 37.037 24.35 8.09 31.88 2.85
1327 1355 9.416284 TGAGGTACATTGTACATCAGTAGATAA 57.584 33.333 30.20 12.86 33.97 1.75
1328 1356 8.990163 TGAGGTACATTGTACATCAGTAGATA 57.010 34.615 30.20 13.45 33.97 1.98
1329 1357 7.898014 TGAGGTACATTGTACATCAGTAGAT 57.102 36.000 30.20 7.18 33.97 1.98
1330 1358 7.712204 TTGAGGTACATTGTACATCAGTAGA 57.288 36.000 31.16 20.49 39.04 2.59
1331 1359 8.820933 CATTTGAGGTACATTGTACATCAGTAG 58.179 37.037 31.16 23.53 39.04 2.57
1332 1360 7.768582 CCATTTGAGGTACATTGTACATCAGTA 59.231 37.037 31.16 25.57 39.04 2.74
1333 1361 6.599244 CCATTTGAGGTACATTGTACATCAGT 59.401 38.462 31.16 24.30 39.04 3.41
1334 1362 6.599244 ACCATTTGAGGTACATTGTACATCAG 59.401 38.462 31.16 24.79 40.98 2.90
1342 1373 7.594758 CACAAAGTAACCATTTGAGGTACATTG 59.405 37.037 5.50 3.23 42.25 2.82
1350 1381 7.206981 ACAGATCACAAAGTAACCATTTGAG 57.793 36.000 5.50 0.00 39.50 3.02
1364 1395 9.123902 CATCCCTAATCATTTAACAGATCACAA 57.876 33.333 0.00 0.00 0.00 3.33
1371 1402 4.821805 ACGGCATCCCTAATCATTTAACAG 59.178 41.667 0.00 0.00 0.00 3.16
1385 1417 1.091537 TGAATTTTCGACGGCATCCC 58.908 50.000 0.00 0.00 0.00 3.85
1388 1420 2.668279 GCAAGTGAATTTTCGACGGCAT 60.668 45.455 0.00 0.00 0.00 4.40
1390 1422 1.327507 GCAAGTGAATTTTCGACGGC 58.672 50.000 0.00 0.00 0.00 5.68
1392 1424 5.559694 AAATTGCAAGTGAATTTTCGACG 57.440 34.783 4.94 0.00 30.45 5.12
1397 1429 9.059260 AGCTAATCAAAATTGCAAGTGAATTTT 57.941 25.926 4.94 3.54 41.52 1.82
1403 1435 6.643770 ACTTCAGCTAATCAAAATTGCAAGTG 59.356 34.615 4.94 3.20 0.00 3.16
1404 1436 6.752168 ACTTCAGCTAATCAAAATTGCAAGT 58.248 32.000 4.94 0.00 0.00 3.16
1405 1437 7.647907 AACTTCAGCTAATCAAAATTGCAAG 57.352 32.000 4.94 0.00 0.00 4.01
1406 1438 9.709495 AATAACTTCAGCTAATCAAAATTGCAA 57.291 25.926 0.00 0.00 0.00 4.08
1407 1439 9.142515 CAATAACTTCAGCTAATCAAAATTGCA 57.857 29.630 0.00 0.00 0.00 4.08
1431 1665 7.388224 TGCATTCGAGGTACTAACAATAAACAA 59.612 33.333 0.00 0.00 41.55 2.83
1439 1673 3.762288 ACTCTGCATTCGAGGTACTAACA 59.238 43.478 6.43 0.00 41.55 2.41
1440 1674 4.373348 ACTCTGCATTCGAGGTACTAAC 57.627 45.455 6.43 0.00 41.55 2.34
1442 1676 3.564644 GCTACTCTGCATTCGAGGTACTA 59.435 47.826 6.43 0.00 41.55 1.82
1443 1677 3.937739 AGCTACTCTGCATTCGAGGTACT 60.938 47.826 6.43 0.00 36.93 2.73
1444 1678 2.359531 AGCTACTCTGCATTCGAGGTAC 59.640 50.000 6.43 0.00 34.99 3.34
1446 1680 1.135915 CAGCTACTCTGCATTCGAGGT 59.864 52.381 6.43 0.00 35.78 3.85
1447 1681 1.135915 ACAGCTACTCTGCATTCGAGG 59.864 52.381 6.43 0.00 46.76 4.63
1448 1682 2.575694 ACAGCTACTCTGCATTCGAG 57.424 50.000 0.14 0.14 46.76 4.04
1450 1684 3.061831 CAGAAACAGCTACTCTGCATTCG 59.938 47.826 6.08 0.00 46.76 3.34
1453 1687 3.692257 ACAGAAACAGCTACTCTGCAT 57.308 42.857 15.34 0.00 46.76 3.96
1454 1688 3.475566 AACAGAAACAGCTACTCTGCA 57.524 42.857 15.34 0.00 46.76 4.41
1455 1689 4.561105 AGTAACAGAAACAGCTACTCTGC 58.439 43.478 15.34 3.93 46.76 4.26
1457 1691 5.986135 CACAAGTAACAGAAACAGCTACTCT 59.014 40.000 0.00 0.00 0.00 3.24
1458 1692 5.177696 CCACAAGTAACAGAAACAGCTACTC 59.822 44.000 0.00 0.00 0.00 2.59
1459 1693 5.057149 CCACAAGTAACAGAAACAGCTACT 58.943 41.667 0.00 0.00 0.00 2.57
1460 1694 4.213482 CCCACAAGTAACAGAAACAGCTAC 59.787 45.833 0.00 0.00 0.00 3.58
1461 1695 4.385825 CCCACAAGTAACAGAAACAGCTA 58.614 43.478 0.00 0.00 0.00 3.32
1462 1696 3.214328 CCCACAAGTAACAGAAACAGCT 58.786 45.455 0.00 0.00 0.00 4.24
1463 1697 2.287608 GCCCACAAGTAACAGAAACAGC 60.288 50.000 0.00 0.00 0.00 4.40
1464 1698 2.293399 GGCCCACAAGTAACAGAAACAG 59.707 50.000 0.00 0.00 0.00 3.16
1465 1699 2.303175 GGCCCACAAGTAACAGAAACA 58.697 47.619 0.00 0.00 0.00 2.83
1466 1700 1.611977 GGGCCCACAAGTAACAGAAAC 59.388 52.381 19.95 0.00 0.00 2.78
1467 1701 1.816183 CGGGCCCACAAGTAACAGAAA 60.816 52.381 24.92 0.00 0.00 2.52
1468 1702 0.250553 CGGGCCCACAAGTAACAGAA 60.251 55.000 24.92 0.00 0.00 3.02
1469 1703 1.122632 TCGGGCCCACAAGTAACAGA 61.123 55.000 24.92 3.18 0.00 3.41
1470 1704 0.035439 ATCGGGCCCACAAGTAACAG 60.035 55.000 24.92 0.23 0.00 3.16
1471 1705 0.322098 CATCGGGCCCACAAGTAACA 60.322 55.000 24.92 0.00 0.00 2.41
1472 1706 0.322187 ACATCGGGCCCACAAGTAAC 60.322 55.000 24.92 0.00 0.00 2.50
1473 1707 0.402504 AACATCGGGCCCACAAGTAA 59.597 50.000 24.92 0.00 0.00 2.24
1474 1708 0.402504 AAACATCGGGCCCACAAGTA 59.597 50.000 24.92 0.00 0.00 2.24
1475 1709 1.152830 AAACATCGGGCCCACAAGT 59.847 52.632 24.92 11.66 0.00 3.16
1476 1710 1.586028 CAAACATCGGGCCCACAAG 59.414 57.895 24.92 10.93 0.00 3.16
1477 1711 2.569354 GCAAACATCGGGCCCACAA 61.569 57.895 24.92 6.80 0.00 3.33
1478 1712 2.130821 TAGCAAACATCGGGCCCACA 62.131 55.000 24.92 7.96 0.00 4.17
1485 1719 3.900941 AGCAGTTTTTAGCAAACATCGG 58.099 40.909 1.53 0.00 32.81 4.18
1490 1724 6.754675 TGAAGGTTAAGCAGTTTTTAGCAAAC 59.245 34.615 7.52 0.00 0.00 2.93
1500 1734 5.036117 TGAAGTCTGAAGGTTAAGCAGTT 57.964 39.130 7.52 0.00 0.00 3.16
1501 1735 4.689612 TGAAGTCTGAAGGTTAAGCAGT 57.310 40.909 7.52 0.00 0.00 4.40
1502 1736 5.300752 TCTTGAAGTCTGAAGGTTAAGCAG 58.699 41.667 7.52 0.00 0.00 4.24
1503 1737 5.290493 TCTTGAAGTCTGAAGGTTAAGCA 57.710 39.130 7.52 0.00 0.00 3.91
1504 1738 5.180304 CCTTCTTGAAGTCTGAAGGTTAAGC 59.820 44.000 17.70 0.00 46.94 3.09
1505 1739 6.793492 CCTTCTTGAAGTCTGAAGGTTAAG 57.207 41.667 17.70 0.00 46.94 1.85
1635 1869 6.899393 AGATGGTGCAAGTTCTTGAAAATA 57.101 33.333 15.52 0.00 0.00 1.40
1708 1942 3.479505 TGCGGAAATAAATTCACCACG 57.520 42.857 0.00 0.00 39.98 4.94
1725 1959 5.991328 ATGAGTTATGGTAGTGAATTGCG 57.009 39.130 0.00 0.00 0.00 4.85
1757 1991 6.119144 TGTCGCTCTTGCCTAAATAAAATC 57.881 37.500 0.00 0.00 35.36 2.17
1758 1992 6.699575 ATGTCGCTCTTGCCTAAATAAAAT 57.300 33.333 0.00 0.00 35.36 1.82
1760 1994 5.645929 TCAATGTCGCTCTTGCCTAAATAAA 59.354 36.000 0.00 0.00 35.36 1.40
1761 1995 5.182487 TCAATGTCGCTCTTGCCTAAATAA 58.818 37.500 0.00 0.00 35.36 1.40
1762 1996 4.765273 TCAATGTCGCTCTTGCCTAAATA 58.235 39.130 0.00 0.00 35.36 1.40
1763 1997 3.609853 TCAATGTCGCTCTTGCCTAAAT 58.390 40.909 0.00 0.00 35.36 1.40
1813 2047 2.083774 TCCTCAATTGCTTGCTTACGG 58.916 47.619 0.00 0.00 32.11 4.02
1879 2113 6.292919 GGAAGATCAACGGTATGCTGATTTAC 60.293 42.308 0.00 0.00 29.97 2.01
1883 2126 3.134623 TGGAAGATCAACGGTATGCTGAT 59.865 43.478 0.00 0.00 32.49 2.90
1918 2161 4.689812 GCTAGATGTGCATCCTTGACTATG 59.310 45.833 8.41 0.00 38.58 2.23
1923 2166 3.036819 AGAGCTAGATGTGCATCCTTGA 58.963 45.455 8.41 0.00 38.58 3.02
1931 2174 0.179127 TGACGCAGAGCTAGATGTGC 60.179 55.000 19.36 19.36 36.18 4.57
1932 2175 1.133982 ACTGACGCAGAGCTAGATGTG 59.866 52.381 12.77 0.00 35.18 3.21
2010 2253 8.418662 TGTTTCAGTGTACAGTACAGTATTTCT 58.581 33.333 18.90 7.02 40.21 2.52
2016 2259 5.114081 GGTTGTTTCAGTGTACAGTACAGT 58.886 41.667 14.03 14.26 42.82 3.55
2017 2260 5.113383 TGGTTGTTTCAGTGTACAGTACAG 58.887 41.667 14.03 3.73 39.77 2.74
2034 2277 9.461312 ACAAGTGTACAAATATATGATGGTTGT 57.539 29.630 0.00 5.35 36.45 3.32
2049 2292 7.446013 CCCCTTGACTTAATTACAAGTGTACAA 59.554 37.037 0.00 4.53 38.86 2.41
2064 2307 5.487488 ACACAATACATCTCCCCTTGACTTA 59.513 40.000 0.00 0.00 0.00 2.24
2066 2309 3.846588 ACACAATACATCTCCCCTTGACT 59.153 43.478 0.00 0.00 0.00 3.41
2102 2345 9.941325 GATAGAATAACATGATGATTGGAGACT 57.059 33.333 0.00 0.00 0.00 3.24
2103 2346 9.716531 TGATAGAATAACATGATGATTGGAGAC 57.283 33.333 0.00 0.00 0.00 3.36
2107 2350 9.457436 TGGATGATAGAATAACATGATGATTGG 57.543 33.333 0.00 0.00 33.95 3.16
2123 2369 8.481314 GCTTCTAATACATGGATGGATGATAGA 58.519 37.037 0.00 0.00 30.03 1.98
2133 2379 9.632638 AGTATTTTGTGCTTCTAATACATGGAT 57.367 29.630 0.00 0.00 36.43 3.41
2141 2387 8.739972 CCTGGTTAAGTATTTTGTGCTTCTAAT 58.260 33.333 0.00 0.00 34.42 1.73
2143 2389 7.455058 TCCTGGTTAAGTATTTTGTGCTTCTA 58.545 34.615 0.00 0.00 34.42 2.10
2144 2390 6.303839 TCCTGGTTAAGTATTTTGTGCTTCT 58.696 36.000 0.00 0.00 34.42 2.85
2146 2392 6.015434 CCTTCCTGGTTAAGTATTTTGTGCTT 60.015 38.462 0.00 0.00 36.65 3.91
2147 2393 5.476945 CCTTCCTGGTTAAGTATTTTGTGCT 59.523 40.000 0.00 0.00 0.00 4.40
2148 2394 5.709966 CCTTCCTGGTTAAGTATTTTGTGC 58.290 41.667 0.00 0.00 0.00 4.57
2149 2395 5.336451 GGCCTTCCTGGTTAAGTATTTTGTG 60.336 44.000 0.00 0.00 38.35 3.33
2150 2396 4.770531 GGCCTTCCTGGTTAAGTATTTTGT 59.229 41.667 0.00 0.00 38.35 2.83
2151 2397 4.159693 GGGCCTTCCTGGTTAAGTATTTTG 59.840 45.833 0.84 0.00 38.35 2.44
2152 2398 4.045462 AGGGCCTTCCTGGTTAAGTATTTT 59.955 41.667 0.00 0.00 46.07 1.82
2153 2399 3.596500 AGGGCCTTCCTGGTTAAGTATTT 59.403 43.478 0.00 0.00 46.07 1.40
2157 2403 3.198784 AGGGCCTTCCTGGTTAAGT 57.801 52.632 0.00 0.00 46.07 2.24
2171 2417 5.977129 CGAATATCATAAAAACCACAAGGGC 59.023 40.000 0.00 0.00 42.05 5.19
2172 2418 7.095695 ACGAATATCATAAAAACCACAAGGG 57.904 36.000 0.00 0.00 44.81 3.95
2173 2419 8.980143 AAACGAATATCATAAAAACCACAAGG 57.020 30.769 0.00 0.00 42.21 3.61
2202 2448 3.616821 TGCAATTAGTGTATGAGCGACAC 59.383 43.478 6.23 6.23 46.20 3.67
2211 2457 5.994250 ACCTCAGACATGCAATTAGTGTAT 58.006 37.500 0.00 0.00 31.89 2.29
2212 2458 5.420725 ACCTCAGACATGCAATTAGTGTA 57.579 39.130 0.00 0.00 0.00 2.90
2220 2469 4.825422 CTTTCTCTACCTCAGACATGCAA 58.175 43.478 0.00 0.00 0.00 4.08
2229 2478 3.176924 ACCTGAGCTTTCTCTACCTCA 57.823 47.619 0.00 0.00 40.03 3.86
2232 2481 5.303333 AGCTATAACCTGAGCTTTCTCTACC 59.697 44.000 0.00 0.00 46.99 3.18
2254 2503 1.505353 CCAAACTGCAGCAGCTAGC 59.495 57.895 23.05 6.62 46.19 3.42
2255 2504 0.321919 TCCCAAACTGCAGCAGCTAG 60.322 55.000 23.05 11.59 42.74 3.42
2257 2506 1.602888 CTCCCAAACTGCAGCAGCT 60.603 57.895 23.05 7.54 42.74 4.24
2258 2507 1.601759 TCTCCCAAACTGCAGCAGC 60.602 57.895 23.05 0.00 42.57 5.25
2259 2508 1.239968 GGTCTCCCAAACTGCAGCAG 61.240 60.000 21.54 21.54 37.52 4.24
2260 2509 1.228245 GGTCTCCCAAACTGCAGCA 60.228 57.895 15.27 0.00 0.00 4.41
2261 2510 1.228245 TGGTCTCCCAAACTGCAGC 60.228 57.895 15.27 0.00 37.98 5.25
2332 2581 7.581213 ACATCATCAGTTACCAAGTTTTGAA 57.419 32.000 0.00 0.00 0.00 2.69
2339 2588 6.558771 TCAACAACATCATCAGTTACCAAG 57.441 37.500 0.00 0.00 0.00 3.61
2364 2613 5.104318 GGAAGGAGGGAGTACTTGATTTGAT 60.104 44.000 0.00 0.00 0.00 2.57
2367 2616 4.175962 TGGAAGGAGGGAGTACTTGATTT 58.824 43.478 0.00 0.00 0.00 2.17
2377 2626 5.325239 ACAAGTATTTTTGGAAGGAGGGAG 58.675 41.667 0.00 0.00 32.32 4.30
2379 2628 4.156008 CGACAAGTATTTTTGGAAGGAGGG 59.844 45.833 0.00 0.00 32.32 4.30
2380 2629 4.156008 CCGACAAGTATTTTTGGAAGGAGG 59.844 45.833 0.00 0.00 32.32 4.30
2381 2630 5.001232 TCCGACAAGTATTTTTGGAAGGAG 58.999 41.667 0.00 0.00 32.32 3.69
2382 2631 4.975631 TCCGACAAGTATTTTTGGAAGGA 58.024 39.130 0.00 0.00 32.32 3.36
2383 2632 5.001232 TCTCCGACAAGTATTTTTGGAAGG 58.999 41.667 0.00 0.00 32.32 3.46
2384 2633 6.554334 TTCTCCGACAAGTATTTTTGGAAG 57.446 37.500 0.00 0.00 32.32 3.46
2385 2634 6.945938 TTTCTCCGACAAGTATTTTTGGAA 57.054 33.333 0.00 0.00 32.32 3.53
2386 2635 6.712998 TCATTTCTCCGACAAGTATTTTTGGA 59.287 34.615 0.00 0.00 32.32 3.53
2387 2636 6.908825 TCATTTCTCCGACAAGTATTTTTGG 58.091 36.000 0.00 0.00 32.32 3.28
2388 2637 7.535258 CACTCATTTCTCCGACAAGTATTTTTG 59.465 37.037 0.00 0.00 0.00 2.44
2389 2638 7.228706 ACACTCATTTCTCCGACAAGTATTTTT 59.771 33.333 0.00 0.00 0.00 1.94
2390 2639 6.710744 ACACTCATTTCTCCGACAAGTATTTT 59.289 34.615 0.00 0.00 0.00 1.82
2391 2640 6.231211 ACACTCATTTCTCCGACAAGTATTT 58.769 36.000 0.00 0.00 0.00 1.40
2392 2641 5.794894 ACACTCATTTCTCCGACAAGTATT 58.205 37.500 0.00 0.00 0.00 1.89
2393 2642 5.407407 ACACTCATTTCTCCGACAAGTAT 57.593 39.130 0.00 0.00 0.00 2.12
2394 2643 4.866508 ACACTCATTTCTCCGACAAGTA 57.133 40.909 0.00 0.00 0.00 2.24
2395 2644 3.753294 ACACTCATTTCTCCGACAAGT 57.247 42.857 0.00 0.00 0.00 3.16
2396 2645 3.927142 GGTACACTCATTTCTCCGACAAG 59.073 47.826 0.00 0.00 0.00 3.16
2397 2646 3.576982 AGGTACACTCATTTCTCCGACAA 59.423 43.478 0.00 0.00 0.00 3.18
2398 2647 3.162666 AGGTACACTCATTTCTCCGACA 58.837 45.455 0.00 0.00 0.00 4.35
2399 2648 3.870633 AGGTACACTCATTTCTCCGAC 57.129 47.619 0.00 0.00 0.00 4.79
2400 2649 4.639310 GTCTAGGTACACTCATTTCTCCGA 59.361 45.833 0.00 0.00 0.00 4.55
2401 2650 4.496010 CGTCTAGGTACACTCATTTCTCCG 60.496 50.000 0.00 0.00 0.00 4.63
2402 2651 4.398673 ACGTCTAGGTACACTCATTTCTCC 59.601 45.833 0.00 0.00 0.00 3.71
2403 2652 5.564048 ACGTCTAGGTACACTCATTTCTC 57.436 43.478 0.00 0.00 0.00 2.87
2404 2653 7.642082 AATACGTCTAGGTACACTCATTTCT 57.358 36.000 0.00 0.00 0.00 2.52
2405 2654 8.699283 AAAATACGTCTAGGTACACTCATTTC 57.301 34.615 0.00 0.00 0.00 2.17
2406 2655 9.798994 CTAAAATACGTCTAGGTACACTCATTT 57.201 33.333 0.00 0.00 0.00 2.32
2407 2656 8.964772 ACTAAAATACGTCTAGGTACACTCATT 58.035 33.333 0.00 0.00 0.00 2.57
2408 2657 8.517062 ACTAAAATACGTCTAGGTACACTCAT 57.483 34.615 0.00 0.00 0.00 2.90
2409 2658 7.928307 ACTAAAATACGTCTAGGTACACTCA 57.072 36.000 0.00 0.00 0.00 3.41
2410 2659 8.672815 AGAACTAAAATACGTCTAGGTACACTC 58.327 37.037 0.00 0.00 0.00 3.51
2411 2660 8.572855 AGAACTAAAATACGTCTAGGTACACT 57.427 34.615 0.00 0.00 0.00 3.55
2412 2661 9.928236 CTAGAACTAAAATACGTCTAGGTACAC 57.072 37.037 0.00 0.00 0.00 2.90
2413 2662 9.890629 TCTAGAACTAAAATACGTCTAGGTACA 57.109 33.333 0.00 0.00 0.00 2.90
2420 2669 8.628280 GGGTGTATCTAGAACTAAAATACGTCT 58.372 37.037 0.00 0.00 0.00 4.18
2421 2670 8.408601 TGGGTGTATCTAGAACTAAAATACGTC 58.591 37.037 0.00 0.00 0.00 4.34
2422 2671 8.297470 TGGGTGTATCTAGAACTAAAATACGT 57.703 34.615 0.00 0.00 0.00 3.57
2423 2672 9.760077 AATGGGTGTATCTAGAACTAAAATACG 57.240 33.333 0.00 0.00 0.00 3.06
2431 2680 8.778059 TGGATAAAAATGGGTGTATCTAGAACT 58.222 33.333 0.00 0.00 0.00 3.01
2432 2681 8.974060 TGGATAAAAATGGGTGTATCTAGAAC 57.026 34.615 0.00 0.00 0.00 3.01
2437 2686 9.136323 GAGAAATGGATAAAAATGGGTGTATCT 57.864 33.333 0.00 0.00 0.00 1.98
2438 2687 8.360390 GGAGAAATGGATAAAAATGGGTGTATC 58.640 37.037 0.00 0.00 0.00 2.24
2439 2688 7.014230 CGGAGAAATGGATAAAAATGGGTGTAT 59.986 37.037 0.00 0.00 0.00 2.29
2440 2689 6.320164 CGGAGAAATGGATAAAAATGGGTGTA 59.680 38.462 0.00 0.00 0.00 2.90
2441 2690 5.127031 CGGAGAAATGGATAAAAATGGGTGT 59.873 40.000 0.00 0.00 0.00 4.16
2442 2691 5.359576 TCGGAGAAATGGATAAAAATGGGTG 59.640 40.000 0.00 0.00 0.00 4.61
2443 2692 5.359860 GTCGGAGAAATGGATAAAAATGGGT 59.640 40.000 0.00 0.00 39.69 4.51
2444 2693 5.359576 TGTCGGAGAAATGGATAAAAATGGG 59.640 40.000 0.00 0.00 39.69 4.00
2445 2694 6.449635 TGTCGGAGAAATGGATAAAAATGG 57.550 37.500 0.00 0.00 39.69 3.16
2446 2695 7.538575 ACTTGTCGGAGAAATGGATAAAAATG 58.461 34.615 0.00 0.00 39.69 2.32
2447 2696 7.703058 ACTTGTCGGAGAAATGGATAAAAAT 57.297 32.000 0.00 0.00 39.69 1.82
2448 2697 8.801882 ATACTTGTCGGAGAAATGGATAAAAA 57.198 30.769 0.00 0.00 39.69 1.94
2449 2698 8.801882 AATACTTGTCGGAGAAATGGATAAAA 57.198 30.769 0.00 0.00 39.69 1.52
2450 2699 8.801882 AAATACTTGTCGGAGAAATGGATAAA 57.198 30.769 0.00 0.00 39.69 1.40
2451 2700 7.497909 GGAAATACTTGTCGGAGAAATGGATAA 59.502 37.037 0.00 0.00 39.69 1.75
2452 2701 6.990349 GGAAATACTTGTCGGAGAAATGGATA 59.010 38.462 0.00 0.00 39.69 2.59
2453 2702 5.823045 GGAAATACTTGTCGGAGAAATGGAT 59.177 40.000 0.00 0.00 39.69 3.41
2454 2703 5.183228 GGAAATACTTGTCGGAGAAATGGA 58.817 41.667 0.00 0.00 39.69 3.41
2455 2704 4.034048 CGGAAATACTTGTCGGAGAAATGG 59.966 45.833 0.00 0.00 39.69 3.16
2456 2705 4.034048 CCGGAAATACTTGTCGGAGAAATG 59.966 45.833 0.00 0.00 42.94 2.32
2457 2706 4.081309 TCCGGAAATACTTGTCGGAGAAAT 60.081 41.667 0.00 0.00 43.84 2.17
2458 2707 3.258872 TCCGGAAATACTTGTCGGAGAAA 59.741 43.478 0.00 0.00 43.84 2.52
2459 2708 2.827322 TCCGGAAATACTTGTCGGAGAA 59.173 45.455 0.00 0.00 43.84 2.87
2460 2709 2.449464 TCCGGAAATACTTGTCGGAGA 58.551 47.619 0.00 0.00 43.84 3.71
2461 2710 2.953466 TCCGGAAATACTTGTCGGAG 57.047 50.000 0.00 0.00 43.84 4.63
2462 2711 1.135315 CGTCCGGAAATACTTGTCGGA 60.135 52.381 5.23 0.00 46.06 4.55
2463 2712 1.274596 CGTCCGGAAATACTTGTCGG 58.725 55.000 5.23 0.00 41.80 4.79
2464 2713 1.135315 TCCGTCCGGAAATACTTGTCG 60.135 52.381 5.23 1.25 42.05 4.35
2465 2714 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
2466 2715 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
2467 2716 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
2468 2717 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
2469 2718 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
2470 2719 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
2471 2720 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
2472 2721 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
2473 2722 0.032813 ATACTCCCTCCGTCCGGAAA 60.033 55.000 5.23 0.00 44.66 3.13
2474 2723 0.754217 CATACTCCCTCCGTCCGGAA 60.754 60.000 5.23 0.00 44.66 4.30
2475 2724 1.152819 CATACTCCCTCCGTCCGGA 60.153 63.158 0.00 0.00 42.90 5.14
2476 2725 1.041447 AACATACTCCCTCCGTCCGG 61.041 60.000 0.00 0.00 0.00 5.14
2477 2726 0.822164 AAACATACTCCCTCCGTCCG 59.178 55.000 0.00 0.00 0.00 4.79
2478 2727 1.829222 TCAAACATACTCCCTCCGTCC 59.171 52.381 0.00 0.00 0.00 4.79
2479 2728 3.821421 ATCAAACATACTCCCTCCGTC 57.179 47.619 0.00 0.00 0.00 4.79
2480 2729 3.517901 TCAATCAAACATACTCCCTCCGT 59.482 43.478 0.00 0.00 0.00 4.69
2481 2730 4.137116 TCAATCAAACATACTCCCTCCG 57.863 45.455 0.00 0.00 0.00 4.63
2482 2731 6.378280 ACAAATCAATCAAACATACTCCCTCC 59.622 38.462 0.00 0.00 0.00 4.30
2483 2732 7.396540 ACAAATCAATCAAACATACTCCCTC 57.603 36.000 0.00 0.00 0.00 4.30
2484 2733 8.877864 TTACAAATCAATCAAACATACTCCCT 57.122 30.769 0.00 0.00 0.00 4.20
2485 2734 9.573133 CTTTACAAATCAATCAAACATACTCCC 57.427 33.333 0.00 0.00 0.00 4.30
2488 2737 9.846248 GCTCTTTACAAATCAATCAAACATACT 57.154 29.630 0.00 0.00 0.00 2.12
2489 2738 9.624697 TGCTCTTTACAAATCAATCAAACATAC 57.375 29.630 0.00 0.00 0.00 2.39
2490 2739 9.624697 GTGCTCTTTACAAATCAATCAAACATA 57.375 29.630 0.00 0.00 0.00 2.29
2491 2740 8.143193 TGTGCTCTTTACAAATCAATCAAACAT 58.857 29.630 0.00 0.00 0.00 2.71
2492 2741 7.487484 TGTGCTCTTTACAAATCAATCAAACA 58.513 30.769 0.00 0.00 0.00 2.83
2493 2742 7.928908 TGTGCTCTTTACAAATCAATCAAAC 57.071 32.000 0.00 0.00 0.00 2.93
2497 2746 6.564854 GCATGTGCTCTTTACAAATCAATC 57.435 37.500 0.00 0.00 38.21 2.67
2545 2794 5.817296 TGCCTGCTCACAAATACTGTATAAG 59.183 40.000 0.00 0.00 36.10 1.73
2548 2797 3.941483 GTGCCTGCTCACAAATACTGTAT 59.059 43.478 0.00 0.00 36.10 2.29
2905 3162 2.632377 CATTCACCTCACGCCAATACT 58.368 47.619 0.00 0.00 0.00 2.12
3381 3698 2.353610 GCAGGTTGATGCAAGGGGG 61.354 63.158 0.00 0.00 45.77 5.40
3382 3699 3.291611 GCAGGTTGATGCAAGGGG 58.708 61.111 0.00 0.00 45.77 4.79
3388 3705 1.000396 AAGAGGGGCAGGTTGATGC 60.000 57.895 0.00 0.00 45.74 3.91
3389 3706 0.394899 GGAAGAGGGGCAGGTTGATG 60.395 60.000 0.00 0.00 0.00 3.07
3390 3707 1.575447 GGGAAGAGGGGCAGGTTGAT 61.575 60.000 0.00 0.00 0.00 2.57
3391 3708 2.231380 GGGAAGAGGGGCAGGTTGA 61.231 63.158 0.00 0.00 0.00 3.18
3392 3709 2.356667 GGGAAGAGGGGCAGGTTG 59.643 66.667 0.00 0.00 0.00 3.77
3393 3710 2.941583 GGGGAAGAGGGGCAGGTT 60.942 66.667 0.00 0.00 0.00 3.50
3394 3711 3.603330 ATGGGGAAGAGGGGCAGGT 62.603 63.158 0.00 0.00 0.00 4.00
3395 3712 2.697644 ATGGGGAAGAGGGGCAGG 60.698 66.667 0.00 0.00 0.00 4.85
3396 3713 2.761465 GGATGGGGAAGAGGGGCAG 61.761 68.421 0.00 0.00 0.00 4.85
3397 3714 2.696125 GGATGGGGAAGAGGGGCA 60.696 66.667 0.00 0.00 0.00 5.36
3398 3715 3.878667 CGGATGGGGAAGAGGGGC 61.879 72.222 0.00 0.00 0.00 5.80
3399 3716 1.571773 AAACGGATGGGGAAGAGGGG 61.572 60.000 0.00 0.00 0.00 4.79
3400 3717 1.209621 TAAACGGATGGGGAAGAGGG 58.790 55.000 0.00 0.00 0.00 4.30
3401 3718 2.640184 GTTAAACGGATGGGGAAGAGG 58.360 52.381 0.00 0.00 0.00 3.69
3402 3719 2.640184 GGTTAAACGGATGGGGAAGAG 58.360 52.381 0.00 0.00 0.00 2.85
3403 3720 1.282738 GGGTTAAACGGATGGGGAAGA 59.717 52.381 0.00 0.00 0.00 2.87
3404 3721 1.683938 GGGGTTAAACGGATGGGGAAG 60.684 57.143 0.00 0.00 0.00 3.46
3405 3722 0.332293 GGGGTTAAACGGATGGGGAA 59.668 55.000 0.00 0.00 0.00 3.97
3406 3723 1.573607 GGGGGTTAAACGGATGGGGA 61.574 60.000 0.00 0.00 0.00 4.81
3407 3724 1.076559 GGGGGTTAAACGGATGGGG 60.077 63.158 0.00 0.00 0.00 4.96
3408 3725 4.670199 GGGGGTTAAACGGATGGG 57.330 61.111 0.00 0.00 0.00 4.00
3702 4041 0.251341 GTTTGGGTGATGCCTCTGGT 60.251 55.000 0.00 0.00 37.43 4.00
3703 4042 0.251297 TGTTTGGGTGATGCCTCTGG 60.251 55.000 0.00 0.00 37.43 3.86
3704 4043 1.270550 GTTGTTTGGGTGATGCCTCTG 59.729 52.381 0.00 0.00 37.43 3.35
3705 4044 1.133513 TGTTGTTTGGGTGATGCCTCT 60.134 47.619 0.00 0.00 37.43 3.69
3706 4045 1.327303 TGTTGTTTGGGTGATGCCTC 58.673 50.000 0.00 0.00 37.43 4.70
3707 4046 1.619827 CATGTTGTTTGGGTGATGCCT 59.380 47.619 0.00 0.00 37.43 4.75
3708 4047 1.617850 TCATGTTGTTTGGGTGATGCC 59.382 47.619 0.00 0.00 0.00 4.40
3709 4048 3.383620 TTCATGTTGTTTGGGTGATGC 57.616 42.857 0.00 0.00 0.00 3.91
3710 4049 4.925054 GTCATTCATGTTGTTTGGGTGATG 59.075 41.667 0.00 0.00 0.00 3.07
3711 4050 4.321156 CGTCATTCATGTTGTTTGGGTGAT 60.321 41.667 0.00 0.00 0.00 3.06
3712 4051 3.004210 CGTCATTCATGTTGTTTGGGTGA 59.996 43.478 0.00 0.00 0.00 4.02
3713 4052 3.004210 TCGTCATTCATGTTGTTTGGGTG 59.996 43.478 0.00 0.00 0.00 4.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.