Multiple sequence alignment - TraesCS2B01G524100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G524100 chr2B 100.000 5925 0 0 1 5925 718601994 718596070 0.000000e+00 10942.0
1 TraesCS2B01G524100 chr2B 88.119 101 9 3 2952 3049 448905709 448905809 3.750000e-22 117.0
2 TraesCS2B01G524100 chr2D 91.986 1984 110 26 26 2001 592632988 592631046 0.000000e+00 2737.0
3 TraesCS2B01G524100 chr2D 93.186 1585 66 19 2525 4074 592630491 592628914 0.000000e+00 2290.0
4 TraesCS2B01G524100 chr2D 91.069 1366 78 21 4121 5459 592628910 592627562 0.000000e+00 1807.0
5 TraesCS2B01G524100 chr2D 91.495 729 44 11 977 1703 533818515 533819227 0.000000e+00 987.0
6 TraesCS2B01G524100 chr2D 93.384 393 21 3 2069 2457 592631013 592630622 1.430000e-160 577.0
7 TraesCS2B01G524100 chr2D 90.196 153 13 2 2966 3118 341698978 341699128 1.300000e-46 198.0
8 TraesCS2B01G524100 chr2D 83.237 173 9 1 2966 3118 342099633 342099805 2.230000e-29 141.0
9 TraesCS2B01G524100 chr2D 87.097 124 11 1 2965 3088 476693994 476693876 1.040000e-27 135.0
10 TraesCS2B01G524100 chr2A 93.470 1807 81 22 3475 5254 727186576 727184780 0.000000e+00 2649.0
11 TraesCS2B01G524100 chr2A 89.396 1754 124 32 48 1781 727190075 727188364 0.000000e+00 2152.0
12 TraesCS2B01G524100 chr2A 96.008 952 29 4 2525 3476 727187610 727186668 0.000000e+00 1539.0
13 TraesCS2B01G524100 chr2A 90.812 653 32 17 1806 2457 727188367 727187742 0.000000e+00 848.0
14 TraesCS2B01G524100 chr2A 82.019 317 18 18 5615 5925 727184437 727184154 3.570000e-57 233.0
15 TraesCS2B01G524100 chr2A 87.129 101 9 4 2952 3048 511475116 511475216 1.750000e-20 111.0
16 TraesCS2B01G524100 chr2A 81.553 103 8 6 5320 5412 727184778 727184677 2.290000e-09 75.0
17 TraesCS2B01G524100 chr2A 81.633 98 9 4 5504 5600 57720493 57720582 8.240000e-09 73.1
18 TraesCS2B01G524100 chrUn 91.751 885 53 13 977 1859 25807399 25806533 0.000000e+00 1212.0
19 TraesCS2B01G524100 chrUn 91.751 885 53 13 977 1859 287201291 287200425 0.000000e+00 1212.0
20 TraesCS2B01G524100 chrUn 91.742 884 53 13 978 1859 213906387 213905522 0.000000e+00 1210.0
21 TraesCS2B01G524100 chrUn 91.991 874 52 11 978 1849 239203105 239203962 0.000000e+00 1210.0
22 TraesCS2B01G524100 chr1A 89.691 873 74 12 977 1847 419804685 419803827 0.000000e+00 1099.0
23 TraesCS2B01G524100 chr6B 88.917 803 66 14 1035 1833 441044500 441043717 0.000000e+00 968.0
24 TraesCS2B01G524100 chr1D 90.797 728 51 10 978 1703 263326803 263327516 0.000000e+00 959.0
25 TraesCS2B01G524100 chr1D 84.314 102 6 5 5495 5595 475925162 475925070 2.270000e-14 91.6
26 TraesCS2B01G524100 chr3B 92.765 622 37 6 1230 1849 47158814 47159429 0.000000e+00 893.0
27 TraesCS2B01G524100 chr3B 84.810 158 18 2 2966 3118 150655486 150655642 2.860000e-33 154.0
28 TraesCS2B01G524100 chr3B 82.353 119 11 5 5495 5611 135687359 135687469 1.760000e-15 95.3
29 TraesCS2B01G524100 chr3B 87.654 81 10 0 2963 3043 335838213 335838293 1.760000e-15 95.3
30 TraesCS2B01G524100 chr5A 88.000 150 14 2 2963 3112 458198350 458198205 2.190000e-39 174.0
31 TraesCS2B01G524100 chr3D 86.076 158 16 2 2966 3118 100224840 100224996 1.320000e-36 165.0
32 TraesCS2B01G524100 chr3D 88.889 81 9 0 2963 3043 264698217 264698297 3.780000e-17 100.0
33 TraesCS2B01G524100 chr5B 95.181 83 4 0 2966 3048 314957216 314957298 1.340000e-26 132.0
34 TraesCS2B01G524100 chr4D 91.579 95 8 0 2989 3083 21146820 21146726 1.340000e-26 132.0
35 TraesCS2B01G524100 chr1B 82.184 174 11 9 2965 3118 363632800 363632627 1.340000e-26 132.0
36 TraesCS2B01G524100 chr7D 91.860 86 6 1 3037 3121 312466990 312466905 1.040000e-22 119.0
37 TraesCS2B01G524100 chr7D 89.552 67 7 0 2966 3032 562291595 562291529 1.060000e-12 86.1
38 TraesCS2B01G524100 chr3A 83.051 118 11 4 5495 5611 102381425 102381534 1.360000e-16 99.0
39 TraesCS2B01G524100 chr3A 87.654 81 10 0 2963 3043 325283075 325283155 1.760000e-15 95.3
40 TraesCS2B01G524100 chr3A 82.727 110 11 5 5495 5603 208033765 208033663 2.270000e-14 91.6
41 TraesCS2B01G524100 chr3A 83.529 85 6 3 5516 5600 701229462 701229386 8.240000e-09 73.1
42 TraesCS2B01G524100 chr5D 82.857 105 10 4 5499 5603 220683250 220683346 2.940000e-13 87.9
43 TraesCS2B01G524100 chr7B 82.353 102 10 4 5501 5602 427397842 427397935 1.370000e-11 82.4
44 TraesCS2B01G524100 chr7B 83.158 95 8 4 5500 5594 153426824 153426910 4.920000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G524100 chr2B 718596070 718601994 5924 True 10942.000000 10942 100.000000 1 5925 1 chr2B.!!$R1 5924
1 TraesCS2B01G524100 chr2D 592627562 592632988 5426 True 1852.750000 2737 92.406250 26 5459 4 chr2D.!!$R2 5433
2 TraesCS2B01G524100 chr2D 533818515 533819227 712 False 987.000000 987 91.495000 977 1703 1 chr2D.!!$F3 726
3 TraesCS2B01G524100 chr2A 727184154 727190075 5921 True 1249.333333 2649 88.876333 48 5925 6 chr2A.!!$R1 5877
4 TraesCS2B01G524100 chrUn 25806533 25807399 866 True 1212.000000 1212 91.751000 977 1859 1 chrUn.!!$R1 882
5 TraesCS2B01G524100 chrUn 287200425 287201291 866 True 1212.000000 1212 91.751000 977 1859 1 chrUn.!!$R3 882
6 TraesCS2B01G524100 chrUn 213905522 213906387 865 True 1210.000000 1210 91.742000 978 1859 1 chrUn.!!$R2 881
7 TraesCS2B01G524100 chrUn 239203105 239203962 857 False 1210.000000 1210 91.991000 978 1849 1 chrUn.!!$F1 871
8 TraesCS2B01G524100 chr1A 419803827 419804685 858 True 1099.000000 1099 89.691000 977 1847 1 chr1A.!!$R1 870
9 TraesCS2B01G524100 chr6B 441043717 441044500 783 True 968.000000 968 88.917000 1035 1833 1 chr6B.!!$R1 798
10 TraesCS2B01G524100 chr1D 263326803 263327516 713 False 959.000000 959 90.797000 978 1703 1 chr1D.!!$F1 725
11 TraesCS2B01G524100 chr3B 47158814 47159429 615 False 893.000000 893 92.765000 1230 1849 1 chr3B.!!$F1 619

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
735 745 0.038166 GCCAGGATCCACAAGGTTCA 59.962 55.000 15.82 0.0 35.67 3.18 F
1532 1565 2.158957 TCAAGAGGATCAACGGTATGCC 60.159 50.000 0.00 0.0 37.82 4.40 F
2489 2560 2.058705 TGATGGTGGTGACTGGGTTTA 58.941 47.619 0.00 0.0 0.00 2.01 F
2822 2936 0.168788 ACGTGCCATCAGAAATTGCG 59.831 50.000 0.00 0.0 0.00 4.85 F
4074 4317 0.037232 GAGAGGCCTTAGTGCGTGTT 60.037 55.000 6.77 0.0 0.00 3.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1610 1644 1.035385 CATGCTCCTTGGCTGCATCA 61.035 55.0 13.79 0.0 44.39 3.07 R
2822 2936 0.035439 TTTCCTCGACTTCATGGGCC 60.035 55.0 0.00 0.0 0.00 5.80 R
4054 4297 0.900647 ACACGCACTAAGGCCTCTCT 60.901 55.0 5.23 0.0 0.00 3.10 R
4544 4792 0.479378 AGGGGAAAACAAGCCGGTTA 59.521 50.0 1.90 0.0 0.00 2.85 R
5152 5406 0.179192 CCGCATCACAAACCATGACG 60.179 55.0 0.00 0.0 0.00 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.045725 CTTCAGCTAATCAAAATTGCAAGTG 57.954 36.000 4.94 3.20 0.00 3.16
30 31 9.059260 AGCTAATCAAAATTGCAAGTGAATTTT 57.941 25.926 4.94 3.54 41.52 1.82
35 36 5.559694 AAATTGCAAGTGAATTTTCGACG 57.440 34.783 4.94 0.00 30.45 5.12
37 38 1.327507 GCAAGTGAATTTTCGACGGC 58.672 50.000 0.00 0.00 0.00 5.68
39 40 2.668279 GCAAGTGAATTTTCGACGGCAT 60.668 45.455 0.00 0.00 0.00 4.40
42 43 1.091537 TGAATTTTCGACGGCATCCC 58.908 50.000 0.00 0.00 0.00 3.85
56 57 4.821805 ACGGCATCCCTAATCATTTAACAG 59.178 41.667 0.00 0.00 0.00 3.16
63 64 9.123902 CATCCCTAATCATTTAACAGATCACAA 57.876 33.333 0.00 0.00 0.00 3.33
77 78 7.206981 ACAGATCACAAAGTAACCATTTGAG 57.793 36.000 5.50 0.00 39.50 3.02
85 86 7.594758 CACAAAGTAACCATTTGAGGTACATTG 59.405 37.037 5.50 3.23 42.25 2.82
93 97 6.599244 ACCATTTGAGGTACATTGTACATCAG 59.401 38.462 31.16 24.79 40.98 2.90
96 100 8.820933 CATTTGAGGTACATTGTACATCAGTAG 58.179 37.037 31.16 23.53 39.04 2.57
98 102 7.898014 TGAGGTACATTGTACATCAGTAGAT 57.102 36.000 30.20 7.18 33.97 1.98
101 105 9.680315 GAGGTACATTGTACATCAGTAGATAAC 57.320 37.037 27.76 9.00 31.88 1.89
102 106 8.639761 AGGTACATTGTACATCAGTAGATAACC 58.360 37.037 24.35 8.09 31.88 2.85
103 107 8.418662 GGTACATTGTACATCAGTAGATAACCA 58.581 37.037 24.35 0.00 31.88 3.67
104 108 9.811995 GTACATTGTACATCAGTAGATAACCAA 57.188 33.333 19.65 0.00 31.88 3.67
106 110 9.905713 ACATTGTACATCAGTAGATAACCAAAT 57.094 29.630 0.00 0.00 31.88 2.32
110 114 9.811995 TGTACATCAGTAGATAACCAAATACAC 57.188 33.333 0.00 0.00 31.88 2.90
116 120 6.199154 CAGTAGATAACCAAATACACGCTGAG 59.801 42.308 0.00 0.00 0.00 3.35
118 122 5.730550 AGATAACCAAATACACGCTGAGAA 58.269 37.500 0.00 0.00 0.00 2.87
128 132 2.297315 ACACGCTGAGAAGAATGAGACA 59.703 45.455 0.00 0.00 0.00 3.41
204 208 1.303799 GGCAGCACCACATCTGTCTG 61.304 60.000 0.00 0.00 38.86 3.51
223 227 3.070734 TCTGGAGATCAGATAGGCAAAGC 59.929 47.826 0.00 0.00 46.71 3.51
278 282 2.722071 GGAGACGAACGAGATAAGCAG 58.278 52.381 0.14 0.00 0.00 4.24
293 297 2.680312 AGCAGCATACTGTGTAGGTG 57.320 50.000 0.00 0.00 46.30 4.00
299 303 2.292794 ATACTGTGTAGGTGGCGCCG 62.293 60.000 23.90 6.26 43.70 6.46
437 441 0.947244 CCATTGCCATCTCGCCTTAC 59.053 55.000 0.00 0.00 0.00 2.34
452 456 1.407437 CCTTACTCTTCTGCGCCCAAT 60.407 52.381 4.18 0.00 0.00 3.16
465 469 1.537348 CGCCCAATAAATCGAGACGGA 60.537 52.381 0.00 0.00 0.00 4.69
553 557 1.144936 GAAGAGGCGCAGTAGGCAT 59.855 57.895 10.83 0.00 45.17 4.40
559 563 1.432270 GGCGCAGTAGGCATGAGAAC 61.432 60.000 10.83 0.00 45.17 3.01
560 564 0.460987 GCGCAGTAGGCATGAGAACT 60.461 55.000 0.30 0.00 45.17 3.01
567 571 0.886563 AGGCATGAGAACTTGCAAGC 59.113 50.000 26.27 11.09 45.13 4.01
568 572 0.108945 GGCATGAGAACTTGCAAGCC 60.109 55.000 26.27 17.60 45.13 4.35
576 580 3.077359 AGAACTTGCAAGCCATACAGAC 58.923 45.455 26.27 7.20 0.00 3.51
712 722 2.618368 CTTGGTTGGGACGGTGGTGT 62.618 60.000 0.00 0.00 0.00 4.16
735 745 0.038166 GCCAGGATCCACAAGGTTCA 59.962 55.000 15.82 0.00 35.67 3.18
793 805 4.410400 CCGGTGGGGTCTTCAGCC 62.410 72.222 0.00 0.00 39.78 4.85
929 949 2.527624 AGGAGCAGCAGACACCCA 60.528 61.111 0.00 0.00 0.00 4.51
991 1016 3.052620 TTTCGCGCCGAGGAGAGAG 62.053 63.158 0.00 0.00 37.14 3.20
1228 1256 3.382832 CCGTCCGTCTCTGCCCTT 61.383 66.667 0.00 0.00 0.00 3.95
1532 1565 2.158957 TCAAGAGGATCAACGGTATGCC 60.159 50.000 0.00 0.00 37.82 4.40
1610 1644 6.233434 TGTTGAATACTGATGAGCTGTTTCT 58.767 36.000 0.00 0.00 0.00 2.52
1730 1764 6.313519 TCTGCTCTACAACCATTTATCCTT 57.686 37.500 0.00 0.00 0.00 3.36
1740 1774 7.547227 ACAACCATTTATCCTTGCAGTAATTC 58.453 34.615 0.00 0.00 0.00 2.17
1981 2019 8.570068 AAACTTTGTTGTACTCCTCTGTAAAA 57.430 30.769 0.00 0.00 0.00 1.52
2013 2051 8.582433 AAGAGCGTTTAGAGAAATATAAGAGC 57.418 34.615 0.00 0.00 0.00 4.09
2014 2052 7.717568 AGAGCGTTTAGAGAAATATAAGAGCA 58.282 34.615 0.00 0.00 0.00 4.26
2015 2053 8.364142 AGAGCGTTTAGAGAAATATAAGAGCAT 58.636 33.333 0.00 0.00 0.00 3.79
2016 2054 8.894768 AGCGTTTAGAGAAATATAAGAGCATT 57.105 30.769 0.00 0.00 0.00 3.56
2017 2055 9.331282 AGCGTTTAGAGAAATATAAGAGCATTT 57.669 29.630 0.00 0.00 0.00 2.32
2120 2167 3.484407 AGCTCCCAAAATGCATAGCTAG 58.516 45.455 16.00 3.99 38.48 3.42
2141 2188 9.967346 AGCTAGTTTTTATTTTTCCTTCAGTTC 57.033 29.630 0.00 0.00 0.00 3.01
2257 2304 5.366482 TGGCAATCTTAGGCATTACAGTA 57.634 39.130 0.00 0.00 36.56 2.74
2404 2454 7.042797 ACATGGTTGCACCTTTATATGATTC 57.957 36.000 0.00 0.00 39.58 2.52
2478 2549 2.851045 GGGGGTGTTGATGGTGGT 59.149 61.111 0.00 0.00 0.00 4.16
2489 2560 2.058705 TGATGGTGGTGACTGGGTTTA 58.941 47.619 0.00 0.00 0.00 2.01
2504 2575 5.018539 TGGGTTTAGTGATGGAAGTATCG 57.981 43.478 0.00 0.00 0.00 2.92
2505 2576 3.808174 GGGTTTAGTGATGGAAGTATCGC 59.192 47.826 0.00 0.00 37.74 4.58
2513 2584 6.640518 AGTGATGGAAGTATCGCTTTTTCTA 58.359 36.000 0.00 0.00 43.40 2.10
2514 2585 7.275920 AGTGATGGAAGTATCGCTTTTTCTAT 58.724 34.615 0.00 0.00 43.40 1.98
2515 2586 7.225538 AGTGATGGAAGTATCGCTTTTTCTATG 59.774 37.037 0.00 0.00 43.40 2.23
2516 2587 6.483307 TGATGGAAGTATCGCTTTTTCTATGG 59.517 38.462 0.00 0.00 37.59 2.74
2517 2588 5.123227 TGGAAGTATCGCTTTTTCTATGGG 58.877 41.667 0.00 0.00 37.59 4.00
2518 2589 5.123936 GGAAGTATCGCTTTTTCTATGGGT 58.876 41.667 0.00 0.00 37.59 4.51
2519 2590 5.007724 GGAAGTATCGCTTTTTCTATGGGTG 59.992 44.000 0.00 0.00 37.59 4.61
2520 2591 5.353394 AGTATCGCTTTTTCTATGGGTGA 57.647 39.130 0.00 0.00 0.00 4.02
2522 2593 6.357367 AGTATCGCTTTTTCTATGGGTGATT 58.643 36.000 0.00 0.00 0.00 2.57
2523 2594 7.506114 AGTATCGCTTTTTCTATGGGTGATTA 58.494 34.615 0.00 0.00 0.00 1.75
2527 2641 6.826231 TCGCTTTTTCTATGGGTGATTATTGA 59.174 34.615 0.00 0.00 0.00 2.57
2822 2936 0.168788 ACGTGCCATCAGAAATTGCG 59.831 50.000 0.00 0.00 0.00 4.85
2879 2993 5.403466 GTCTGTTTGAAATTGCATGAGGAAC 59.597 40.000 0.00 0.00 0.00 3.62
2910 3024 7.367285 TCATGTTTGGCACTTTCAAGTTATAC 58.633 34.615 0.00 0.00 37.08 1.47
2941 3055 5.788450 AGTTCAGTCACACTTTCTGATAGG 58.212 41.667 0.33 0.00 37.91 2.57
2942 3056 4.193826 TCAGTCACACTTTCTGATAGGC 57.806 45.455 0.33 0.00 34.00 3.93
2943 3057 3.834813 TCAGTCACACTTTCTGATAGGCT 59.165 43.478 0.00 0.00 34.00 4.58
2944 3058 5.016831 TCAGTCACACTTTCTGATAGGCTA 58.983 41.667 0.00 0.00 34.00 3.93
3052 3188 7.193595 CGAATTTTCCAGTTAATCGGCTATTT 58.806 34.615 0.00 0.00 0.00 1.40
3357 3493 1.585006 CAAGCTTGCAGCCCTGAAG 59.415 57.895 14.65 2.09 43.77 3.02
3508 3737 1.341209 GCCACTTCTTTTGGGGAGTTG 59.659 52.381 0.00 0.00 34.35 3.16
3528 3757 5.471456 AGTTGCATTCGATCTTTTCTTCTGT 59.529 36.000 0.00 0.00 0.00 3.41
3544 3773 8.506168 TTTCTTCTGTTTGTGTCTCAGTAATT 57.494 30.769 0.00 0.00 0.00 1.40
3545 3774 8.506168 TTCTTCTGTTTGTGTCTCAGTAATTT 57.494 30.769 0.00 0.00 0.00 1.82
3688 3917 5.572896 CCGGAAGAAAATTGTGATGCTTTAC 59.427 40.000 0.00 0.00 0.00 2.01
3691 3920 7.481798 CGGAAGAAAATTGTGATGCTTTACTAC 59.518 37.037 0.00 0.00 0.00 2.73
3696 3925 8.621532 AAAATTGTGATGCTTTACTACTCTCA 57.378 30.769 0.00 0.00 0.00 3.27
3706 3935 7.506114 TGCTTTACTACTCTCAGGAAGAAAAA 58.494 34.615 0.00 0.00 32.23 1.94
3737 3966 3.822735 TCGAGTACTCTCCGGAAGAAAAA 59.177 43.478 20.34 0.00 37.40 1.94
3758 3987 7.656707 AAAATTGTGATGCTTTTTAGCGATT 57.343 28.000 0.00 0.00 37.69 3.34
3767 3996 6.689178 TGCTTTTTAGCGATTGATGTTTTC 57.311 33.333 0.00 0.00 37.69 2.29
3817 4047 3.679980 CCAGTGAGTGGTTGAAAGATACG 59.320 47.826 0.00 0.00 42.17 3.06
3823 4053 5.069501 AGTGGTTGAAAGATACGTACTCC 57.930 43.478 0.00 0.00 0.00 3.85
3835 4065 1.033574 CGTACTCCTAGGCCCTTCTG 58.966 60.000 2.96 0.00 0.00 3.02
3836 4066 1.415200 GTACTCCTAGGCCCTTCTGG 58.585 60.000 2.96 0.00 37.09 3.86
3879 4114 1.701847 CTATGGCTGCCAAGTAGGGAT 59.298 52.381 27.24 9.02 36.98 3.85
3880 4115 0.929244 ATGGCTGCCAAGTAGGGATT 59.071 50.000 27.24 2.08 36.98 3.01
3916 4151 8.321353 TGTGGCAAGATAATTAAGAAGAGAGAA 58.679 33.333 0.00 0.00 0.00 2.87
3964 4201 1.546029 TGCTAGATGCGCATACCTAGG 59.454 52.381 31.44 20.33 46.63 3.02
4026 4269 9.515226 TCCACAACTAATTAAATGAAGCTTAGT 57.485 29.630 0.00 0.00 34.89 2.24
4074 4317 0.037232 GAGAGGCCTTAGTGCGTGTT 60.037 55.000 6.77 0.00 0.00 3.32
4075 4318 0.396811 AGAGGCCTTAGTGCGTGTTT 59.603 50.000 6.77 0.00 0.00 2.83
4082 4325 3.425758 GCCTTAGTGCGTGTTTTATCACC 60.426 47.826 0.00 0.00 35.18 4.02
4097 4340 1.973281 CACCAGCAGTTTCCGCCAT 60.973 57.895 0.00 0.00 0.00 4.40
4103 4346 1.812571 AGCAGTTTCCGCCATAAGTTG 59.187 47.619 0.00 0.00 0.00 3.16
4157 4400 5.481473 AGCCATCAATACATCACTTTGGTTT 59.519 36.000 0.00 0.00 0.00 3.27
4158 4401 6.014327 AGCCATCAATACATCACTTTGGTTTT 60.014 34.615 0.00 0.00 0.00 2.43
4235 4478 6.591935 TCTGTCCTCAGAACAGTAATTTGTT 58.408 36.000 0.00 0.00 46.17 2.83
4323 4566 6.558771 TGATATATGCATGCCTTAACACAC 57.441 37.500 16.68 0.00 0.00 3.82
4366 4612 7.899178 TTTAGCGATTATGAGTTGAGAACAA 57.101 32.000 0.00 0.00 0.00 2.83
4377 4623 7.912949 TGAGTTGAGAACAATTCAAAATTCG 57.087 32.000 0.00 0.00 45.12 3.34
4384 4630 6.215845 AGAACAATTCAAAATTCGTCCCAAG 58.784 36.000 0.00 0.00 0.00 3.61
4423 4669 6.072508 GCAGTTCTACATTTTCACTCATGGAA 60.073 38.462 0.00 0.00 0.00 3.53
4444 4692 9.959721 ATGGAAGTGTAATATACTTGTTCTGTT 57.040 29.630 7.14 0.00 38.42 3.16
4521 4769 6.210385 TCATTAAAGCCTTTGCAGGTAATCAA 59.790 34.615 0.00 0.00 43.18 2.57
4544 4792 2.779755 TGTCGCCATCAGTTTACCAT 57.220 45.000 0.00 0.00 0.00 3.55
4565 4813 0.397957 ACCGGCTTGTTTTCCCCTTT 60.398 50.000 0.00 0.00 0.00 3.11
4738 4986 4.219070 TCTGTCCGCTAGTTTAAGCTGTTA 59.781 41.667 1.54 0.00 40.49 2.41
4744 4992 5.123344 CCGCTAGTTTAAGCTGTTACCAATT 59.877 40.000 1.54 0.00 40.49 2.32
4834 5087 5.493133 TTTTGCGACAAGTGTGTAATCTT 57.507 34.783 0.00 0.00 38.41 2.40
4841 5095 6.519761 GCGACAAGTGTGTAATCTTTTATGTG 59.480 38.462 0.00 0.00 38.41 3.21
4849 5103 9.559958 GTGTGTAATCTTTTATGTGATTCCTTG 57.440 33.333 0.00 0.00 35.01 3.61
4870 5124 4.081406 TGCAGATGCTAAACAAGGAACAT 58.919 39.130 6.35 0.00 42.66 2.71
4915 5169 2.577059 GCCGTACCTACTGCAGCA 59.423 61.111 15.27 0.00 36.59 4.41
4944 5198 3.318839 TGAATGTCCTTGTTTGCCTCAAG 59.681 43.478 5.89 5.89 41.06 3.02
4973 5227 1.696336 AGCGATCTATGACCCAGCATT 59.304 47.619 0.00 0.00 0.00 3.56
5066 5320 8.443160 CACTTTGATGTTTACTTCATGTACGAT 58.557 33.333 0.00 0.00 31.40 3.73
5152 5406 4.119862 TCTTATACTGTTTCATCTGCCGC 58.880 43.478 0.00 0.00 0.00 6.53
5273 5531 4.804261 GCTCAGAGGTTACACACTTTGGAT 60.804 45.833 0.00 0.00 0.00 3.41
5274 5532 5.568825 GCTCAGAGGTTACACACTTTGGATA 60.569 44.000 0.00 0.00 0.00 2.59
5275 5533 6.037786 TCAGAGGTTACACACTTTGGATAG 57.962 41.667 0.00 0.00 0.00 2.08
5276 5534 5.778241 TCAGAGGTTACACACTTTGGATAGA 59.222 40.000 0.00 0.00 0.00 1.98
5277 5535 6.440647 TCAGAGGTTACACACTTTGGATAGAT 59.559 38.462 0.00 0.00 0.00 1.98
5278 5536 6.536582 CAGAGGTTACACACTTTGGATAGATG 59.463 42.308 0.00 0.00 0.00 2.90
5279 5537 5.745227 AGGTTACACACTTTGGATAGATGG 58.255 41.667 0.00 0.00 0.00 3.51
5280 5538 5.487488 AGGTTACACACTTTGGATAGATGGA 59.513 40.000 0.00 0.00 0.00 3.41
5281 5539 6.012858 AGGTTACACACTTTGGATAGATGGAA 60.013 38.462 0.00 0.00 0.00 3.53
5282 5540 6.093633 GGTTACACACTTTGGATAGATGGAAC 59.906 42.308 0.00 0.00 32.55 3.62
5299 5557 4.651778 TGGAACATTGAGTCGATTTCCTT 58.348 39.130 22.08 3.82 34.72 3.36
5300 5558 4.455533 TGGAACATTGAGTCGATTTCCTTG 59.544 41.667 22.08 5.73 34.72 3.61
5306 5564 6.488683 ACATTGAGTCGATTTCCTTGGTAAAA 59.511 34.615 0.00 0.00 0.00 1.52
5328 5586 7.759489 AAATTTTGACATAGCTTGGTACTGA 57.241 32.000 0.00 0.00 0.00 3.41
5344 5602 6.007076 TGGTACTGATAAGGCAATCAAACAA 58.993 36.000 4.42 0.00 35.51 2.83
5372 5630 5.230726 ACGAAAGAACGTACTTGTACAGTTG 59.769 40.000 18.15 10.58 44.72 3.16
5373 5631 5.456497 CGAAAGAACGTACTTGTACAGTTGA 59.544 40.000 18.15 0.00 36.88 3.18
5375 5633 7.463119 CGAAAGAACGTACTTGTACAGTTGAAA 60.463 37.037 18.15 0.00 36.88 2.69
5376 5634 7.781548 AAGAACGTACTTGTACAGTTGAAAT 57.218 32.000 18.15 3.19 36.88 2.17
5377 5635 7.781548 AGAACGTACTTGTACAGTTGAAATT 57.218 32.000 18.15 0.00 36.88 1.82
5378 5636 8.205131 AGAACGTACTTGTACAGTTGAAATTT 57.795 30.769 18.15 0.00 36.88 1.82
5379 5637 8.120465 AGAACGTACTTGTACAGTTGAAATTTG 58.880 33.333 18.15 0.00 36.88 2.32
5380 5638 7.542534 ACGTACTTGTACAGTTGAAATTTGA 57.457 32.000 10.91 0.00 36.88 2.69
5412 5680 1.136891 AGCACAGAAAAGGCAACCAAC 59.863 47.619 0.00 0.00 37.17 3.77
5414 5682 2.676463 GCACAGAAAAGGCAACCAACAA 60.676 45.455 0.00 0.00 37.17 2.83
5415 5683 2.929398 CACAGAAAAGGCAACCAACAAC 59.071 45.455 0.00 0.00 37.17 3.32
5417 5685 3.189285 CAGAAAAGGCAACCAACAACAG 58.811 45.455 0.00 0.00 37.17 3.16
5418 5686 1.933181 GAAAAGGCAACCAACAACAGC 59.067 47.619 0.00 0.00 37.17 4.40
5420 5688 0.901124 AAGGCAACCAACAACAGCAA 59.099 45.000 0.00 0.00 37.17 3.91
5421 5689 0.461135 AGGCAACCAACAACAGCAAG 59.539 50.000 0.00 0.00 37.17 4.01
5423 5691 1.069049 GGCAACCAACAACAGCAAGAT 59.931 47.619 0.00 0.00 0.00 2.40
5425 5693 3.308530 GCAACCAACAACAGCAAGATAC 58.691 45.455 0.00 0.00 0.00 2.24
5429 5699 3.181445 ACCAACAACAGCAAGATACAGGA 60.181 43.478 0.00 0.00 0.00 3.86
5432 5702 5.047802 CCAACAACAGCAAGATACAGGAAAT 60.048 40.000 0.00 0.00 0.00 2.17
5450 5720 4.445448 GGAAATCACCTGATAGATGGCTGT 60.445 45.833 0.00 0.00 33.73 4.40
5471 5741 2.112279 AGGTACTCCCTTTGTCCACA 57.888 50.000 0.00 0.00 42.73 4.17
5472 5742 2.414612 AGGTACTCCCTTTGTCCACAA 58.585 47.619 0.00 0.00 42.73 3.33
5473 5743 2.781174 AGGTACTCCCTTTGTCCACAAA 59.219 45.455 4.83 4.83 42.73 2.83
5474 5744 3.397955 AGGTACTCCCTTTGTCCACAAAT 59.602 43.478 5.35 0.00 42.73 2.32
5475 5745 4.600111 AGGTACTCCCTTTGTCCACAAATA 59.400 41.667 5.35 0.00 42.73 1.40
5476 5746 5.253096 AGGTACTCCCTTTGTCCACAAATAT 59.747 40.000 5.35 0.00 42.73 1.28
5477 5747 6.445786 AGGTACTCCCTTTGTCCACAAATATA 59.554 38.462 5.35 0.00 42.73 0.86
5478 5748 7.037153 AGGTACTCCCTTTGTCCACAAATATAA 60.037 37.037 5.35 0.00 42.73 0.98
5479 5749 7.282450 GGTACTCCCTTTGTCCACAAATATAAG 59.718 40.741 5.35 4.54 43.92 1.73
5480 5750 7.027874 ACTCCCTTTGTCCACAAATATAAGA 57.972 36.000 5.35 0.00 43.92 2.10
5481 5751 7.643123 ACTCCCTTTGTCCACAAATATAAGAT 58.357 34.615 5.35 0.00 43.92 2.40
5482 5752 7.557719 ACTCCCTTTGTCCACAAATATAAGATG 59.442 37.037 5.35 0.00 43.92 2.90
5483 5753 7.410174 TCCCTTTGTCCACAAATATAAGATGT 58.590 34.615 5.35 0.00 43.92 3.06
5484 5754 7.339212 TCCCTTTGTCCACAAATATAAGATGTG 59.661 37.037 5.35 8.26 43.92 3.21
5497 5767 9.712305 AAATATAAGATGTGGAGATTTAGACGG 57.288 33.333 0.00 0.00 0.00 4.79
5498 5768 6.978674 ATAAGATGTGGAGATTTAGACGGA 57.021 37.500 0.00 0.00 0.00 4.69
5499 5769 4.657436 AGATGTGGAGATTTAGACGGAC 57.343 45.455 0.00 0.00 0.00 4.79
5500 5770 4.282496 AGATGTGGAGATTTAGACGGACT 58.718 43.478 0.00 0.00 0.00 3.85
5501 5771 3.868757 TGTGGAGATTTAGACGGACTG 57.131 47.619 0.00 0.00 0.00 3.51
5502 5772 3.427573 TGTGGAGATTTAGACGGACTGA 58.572 45.455 0.00 0.00 0.00 3.41
5503 5773 3.830178 TGTGGAGATTTAGACGGACTGAA 59.170 43.478 0.00 0.00 0.00 3.02
5504 5774 4.282449 TGTGGAGATTTAGACGGACTGAAA 59.718 41.667 0.00 0.00 0.00 2.69
5505 5775 5.046591 TGTGGAGATTTAGACGGACTGAAAT 60.047 40.000 0.00 0.00 0.00 2.17
5506 5776 6.153851 TGTGGAGATTTAGACGGACTGAAATA 59.846 38.462 0.00 0.00 0.00 1.40
5507 5777 7.039882 GTGGAGATTTAGACGGACTGAAATAA 58.960 38.462 0.00 0.00 0.00 1.40
5508 5778 7.548075 GTGGAGATTTAGACGGACTGAAATAAA 59.452 37.037 0.00 0.00 0.00 1.40
5509 5779 8.265055 TGGAGATTTAGACGGACTGAAATAAAT 58.735 33.333 0.00 0.00 0.00 1.40
5510 5780 8.552034 GGAGATTTAGACGGACTGAAATAAATG 58.448 37.037 7.42 0.00 0.00 2.32
5511 5781 9.314321 GAGATTTAGACGGACTGAAATAAATGA 57.686 33.333 7.42 0.00 0.00 2.57
5512 5782 9.667107 AGATTTAGACGGACTGAAATAAATGAA 57.333 29.630 7.42 0.00 0.00 2.57
5513 5783 9.704098 GATTTAGACGGACTGAAATAAATGAAC 57.296 33.333 7.42 0.00 0.00 3.18
5514 5784 8.610248 TTTAGACGGACTGAAATAAATGAACA 57.390 30.769 0.00 0.00 0.00 3.18
5515 5785 8.610248 TTAGACGGACTGAAATAAATGAACAA 57.390 30.769 0.00 0.00 0.00 2.83
5516 5786 7.504924 AGACGGACTGAAATAAATGAACAAA 57.495 32.000 0.00 0.00 0.00 2.83
5517 5787 7.936584 AGACGGACTGAAATAAATGAACAAAA 58.063 30.769 0.00 0.00 0.00 2.44
5518 5788 7.860872 AGACGGACTGAAATAAATGAACAAAAC 59.139 33.333 0.00 0.00 0.00 2.43
5519 5789 7.484975 ACGGACTGAAATAAATGAACAAAACA 58.515 30.769 0.00 0.00 0.00 2.83
5520 5790 7.434013 ACGGACTGAAATAAATGAACAAAACAC 59.566 33.333 0.00 0.00 0.00 3.32
5521 5791 7.433719 CGGACTGAAATAAATGAACAAAACACA 59.566 33.333 0.00 0.00 0.00 3.72
5522 5792 8.755018 GGACTGAAATAAATGAACAAAACACAG 58.245 33.333 0.00 0.00 0.00 3.66
5523 5793 9.301153 GACTGAAATAAATGAACAAAACACAGT 57.699 29.630 0.00 0.00 35.56 3.55
5532 5802 8.770438 AATGAACAAAACACAGTAAAACATGT 57.230 26.923 0.00 0.00 0.00 3.21
5533 5803 7.804614 TGAACAAAACACAGTAAAACATGTC 57.195 32.000 0.00 0.00 0.00 3.06
5534 5804 7.598278 TGAACAAAACACAGTAAAACATGTCT 58.402 30.769 0.00 0.00 0.00 3.41
5535 5805 8.731605 TGAACAAAACACAGTAAAACATGTCTA 58.268 29.630 0.00 0.00 0.00 2.59
5536 5806 9.730420 GAACAAAACACAGTAAAACATGTCTAT 57.270 29.630 0.00 0.00 0.00 1.98
5563 5833 7.913674 ACATCTGATTCAGGAAAGAAGTTAC 57.086 36.000 13.59 0.00 31.51 2.50
5564 5834 7.684529 ACATCTGATTCAGGAAAGAAGTTACT 58.315 34.615 13.59 0.00 31.51 2.24
5565 5835 8.816894 ACATCTGATTCAGGAAAGAAGTTACTA 58.183 33.333 13.59 0.00 31.51 1.82
5566 5836 9.311916 CATCTGATTCAGGAAAGAAGTTACTAG 57.688 37.037 13.59 0.00 31.51 2.57
5567 5837 8.651589 TCTGATTCAGGAAAGAAGTTACTAGA 57.348 34.615 13.59 0.00 31.51 2.43
5574 5844 8.361139 TCAGGAAAGAAGTTACTAGAAGAACAG 58.639 37.037 0.00 0.00 0.00 3.16
5593 5863 6.313905 AGAACAGCTTATATTTGTCAACGGAG 59.686 38.462 0.00 0.00 0.00 4.63
5595 5865 5.116180 CAGCTTATATTTGTCAACGGAGGA 58.884 41.667 0.00 0.00 0.00 3.71
5599 5869 6.759827 GCTTATATTTGTCAACGGAGGAAGTA 59.240 38.462 0.00 0.00 0.00 2.24
5600 5870 7.042658 GCTTATATTTGTCAACGGAGGAAGTAG 60.043 40.741 0.00 0.00 0.00 2.57
5601 5871 4.618920 ATTTGTCAACGGAGGAAGTAGT 57.381 40.909 0.00 0.00 0.00 2.73
5603 5873 3.655276 TGTCAACGGAGGAAGTAGTTC 57.345 47.619 1.31 1.31 0.00 3.01
5604 5874 2.960384 TGTCAACGGAGGAAGTAGTTCA 59.040 45.455 12.31 0.00 33.93 3.18
5607 5877 5.421056 TGTCAACGGAGGAAGTAGTTCATAT 59.579 40.000 12.31 0.00 33.93 1.78
5610 5880 6.153851 TCAACGGAGGAAGTAGTTCATATTCA 59.846 38.462 12.31 0.00 33.93 2.57
5611 5881 6.540438 ACGGAGGAAGTAGTTCATATTCAA 57.460 37.500 12.31 0.00 33.93 2.69
5612 5882 6.942976 ACGGAGGAAGTAGTTCATATTCAAA 58.057 36.000 12.31 0.00 33.93 2.69
5615 5885 7.549488 CGGAGGAAGTAGTTCATATTCAAACTT 59.451 37.037 12.31 0.00 37.02 2.66
5616 5886 8.884726 GGAGGAAGTAGTTCATATTCAAACTTC 58.115 37.037 12.31 0.00 40.22 3.01
5618 5888 9.442047 AGGAAGTAGTTCATATTCAAACTTCTG 57.558 33.333 12.31 0.00 40.58 3.02
5619 5889 9.436957 GGAAGTAGTTCATATTCAAACTTCTGA 57.563 33.333 12.31 0.00 40.58 3.27
5622 5892 8.940952 AGTAGTTCATATTCAAACTTCTGAAGC 58.059 33.333 17.00 0.00 38.66 3.86
5623 5893 7.150783 AGTTCATATTCAAACTTCTGAAGCC 57.849 36.000 17.00 0.00 38.66 4.35
5649 6068 4.562552 GCTATCTCCAGATTAGTTCCAGGC 60.563 50.000 0.00 0.00 36.05 4.85
5665 6084 7.175104 AGTTCCAGGCTTGAATTTGTTATCTA 58.825 34.615 4.16 0.00 0.00 1.98
5668 6087 6.823689 TCCAGGCTTGAATTTGTTATCTACTC 59.176 38.462 0.00 0.00 0.00 2.59
5669 6088 6.038714 CCAGGCTTGAATTTGTTATCTACTCC 59.961 42.308 0.00 0.00 0.00 3.85
5670 6089 6.599244 CAGGCTTGAATTTGTTATCTACTCCA 59.401 38.462 0.00 0.00 0.00 3.86
5671 6090 6.599638 AGGCTTGAATTTGTTATCTACTCCAC 59.400 38.462 0.00 0.00 0.00 4.02
5672 6091 6.599638 GGCTTGAATTTGTTATCTACTCCACT 59.400 38.462 0.00 0.00 0.00 4.00
5673 6092 7.414540 GGCTTGAATTTGTTATCTACTCCACTG 60.415 40.741 0.00 0.00 0.00 3.66
5674 6093 7.119846 GCTTGAATTTGTTATCTACTCCACTGT 59.880 37.037 0.00 0.00 0.00 3.55
5675 6094 8.547967 TTGAATTTGTTATCTACTCCACTGTC 57.452 34.615 0.00 0.00 0.00 3.51
5705 6124 7.665145 ACCGAATTGGAATTGGAATTTGAATTT 59.335 29.630 0.00 0.00 42.00 1.82
5719 6138 8.505625 GGAATTTGAATTTGCTGCTGAAATAAA 58.494 29.630 0.00 0.00 0.00 1.40
5776 6197 0.800012 TTAAAGATGGGAACGCGCAC 59.200 50.000 5.73 0.00 39.97 5.34
5782 6203 3.488090 GGGAACGCGCACAGTAGC 61.488 66.667 5.73 0.00 0.00 3.58
5793 6216 2.064762 GCACAGTAGCACTCAACTCAG 58.935 52.381 0.00 0.00 0.00 3.35
5812 6235 3.382832 CTCCTCCGCCGTGTCCTT 61.383 66.667 0.00 0.00 0.00 3.36
5813 6236 3.649277 CTCCTCCGCCGTGTCCTTG 62.649 68.421 0.00 0.00 0.00 3.61
5814 6237 4.003788 CCTCCGCCGTGTCCTTGT 62.004 66.667 0.00 0.00 0.00 3.16
5815 6238 2.738521 CTCCGCCGTGTCCTTGTG 60.739 66.667 0.00 0.00 0.00 3.33
5816 6239 3.515316 CTCCGCCGTGTCCTTGTGT 62.515 63.158 0.00 0.00 0.00 3.72
5817 6240 2.590575 CCGCCGTGTCCTTGTGTT 60.591 61.111 0.00 0.00 0.00 3.32
5818 6241 2.604174 CCGCCGTGTCCTTGTGTTC 61.604 63.158 0.00 0.00 0.00 3.18
5819 6242 2.604174 CGCCGTGTCCTTGTGTTCC 61.604 63.158 0.00 0.00 0.00 3.62
5820 6243 1.227853 GCCGTGTCCTTGTGTTCCT 60.228 57.895 0.00 0.00 0.00 3.36
5821 6244 1.228657 GCCGTGTCCTTGTGTTCCTC 61.229 60.000 0.00 0.00 0.00 3.71
5822 6245 0.393077 CCGTGTCCTTGTGTTCCTCT 59.607 55.000 0.00 0.00 0.00 3.69
5823 6246 1.605712 CCGTGTCCTTGTGTTCCTCTC 60.606 57.143 0.00 0.00 0.00 3.20
5824 6247 1.341531 CGTGTCCTTGTGTTCCTCTCT 59.658 52.381 0.00 0.00 0.00 3.10
5825 6248 2.608261 CGTGTCCTTGTGTTCCTCTCTC 60.608 54.545 0.00 0.00 0.00 3.20
5826 6249 1.613925 TGTCCTTGTGTTCCTCTCTCG 59.386 52.381 0.00 0.00 0.00 4.04
5827 6250 0.603569 TCCTTGTGTTCCTCTCTCGC 59.396 55.000 0.00 0.00 0.00 5.03
5828 6251 0.390472 CCTTGTGTTCCTCTCTCGCC 60.390 60.000 0.00 0.00 0.00 5.54
5829 6252 0.734253 CTTGTGTTCCTCTCTCGCCG 60.734 60.000 0.00 0.00 0.00 6.46
5830 6253 1.461091 TTGTGTTCCTCTCTCGCCGT 61.461 55.000 0.00 0.00 0.00 5.68
5831 6254 1.444553 GTGTTCCTCTCTCGCCGTG 60.445 63.158 0.00 0.00 0.00 4.94
5899 6322 4.959596 GCGATCGGCCCAGAGAGC 62.960 72.222 18.30 0.00 34.80 4.09
5908 6331 2.041115 CCCAGAGAGCTCGTCGACA 61.041 63.158 17.16 1.87 34.09 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.864685 TCACTTGCAATTTTGATTAGCTGAAG 59.135 34.615 0.00 0.00 0.00 3.02
1 2 6.747125 TCACTTGCAATTTTGATTAGCTGAA 58.253 32.000 0.00 0.00 0.00 3.02
2 3 6.330004 TCACTTGCAATTTTGATTAGCTGA 57.670 33.333 0.00 0.00 0.00 4.26
3 4 7.591006 ATTCACTTGCAATTTTGATTAGCTG 57.409 32.000 0.00 0.00 0.00 4.24
4 5 8.611654 AAATTCACTTGCAATTTTGATTAGCT 57.388 26.923 0.00 0.00 30.74 3.32
5 6 9.321590 GAAAATTCACTTGCAATTTTGATTAGC 57.678 29.630 11.38 0.00 41.43 3.09
6 7 9.519905 CGAAAATTCACTTGCAATTTTGATTAG 57.480 29.630 11.38 0.00 41.43 1.73
7 8 9.254133 TCGAAAATTCACTTGCAATTTTGATTA 57.746 25.926 11.38 0.00 41.43 1.75
8 9 8.063630 GTCGAAAATTCACTTGCAATTTTGATT 58.936 29.630 11.38 4.17 41.43 2.57
9 10 7.566709 GTCGAAAATTCACTTGCAATTTTGAT 58.433 30.769 11.38 0.00 41.43 2.57
10 11 6.291532 CGTCGAAAATTCACTTGCAATTTTGA 60.292 34.615 11.38 8.96 41.43 2.69
11 12 5.835151 CGTCGAAAATTCACTTGCAATTTTG 59.165 36.000 11.38 7.03 41.43 2.44
12 13 5.051106 CCGTCGAAAATTCACTTGCAATTTT 60.051 36.000 0.00 3.27 43.15 1.82
13 14 4.444056 CCGTCGAAAATTCACTTGCAATTT 59.556 37.500 0.00 0.00 35.40 1.82
14 15 3.980775 CCGTCGAAAATTCACTTGCAATT 59.019 39.130 0.00 0.00 0.00 2.32
15 16 3.564511 CCGTCGAAAATTCACTTGCAAT 58.435 40.909 0.00 0.00 0.00 3.56
16 17 2.856720 GCCGTCGAAAATTCACTTGCAA 60.857 45.455 0.00 0.00 0.00 4.08
17 18 1.334599 GCCGTCGAAAATTCACTTGCA 60.335 47.619 0.00 0.00 0.00 4.08
18 19 1.327507 GCCGTCGAAAATTCACTTGC 58.672 50.000 0.00 0.00 0.00 4.01
19 20 2.679355 TGCCGTCGAAAATTCACTTG 57.321 45.000 0.00 0.00 0.00 3.16
20 21 2.161609 GGATGCCGTCGAAAATTCACTT 59.838 45.455 0.00 0.00 0.00 3.16
21 22 1.737793 GGATGCCGTCGAAAATTCACT 59.262 47.619 0.00 0.00 0.00 3.41
22 23 1.202143 GGGATGCCGTCGAAAATTCAC 60.202 52.381 0.00 0.00 0.00 3.18
23 24 1.091537 GGGATGCCGTCGAAAATTCA 58.908 50.000 0.00 0.00 0.00 2.57
24 25 1.379527 AGGGATGCCGTCGAAAATTC 58.620 50.000 0.00 0.00 0.00 2.17
30 31 1.338107 ATGATTAGGGATGCCGTCGA 58.662 50.000 0.00 0.00 0.00 4.20
35 36 6.716628 TGATCTGTTAAATGATTAGGGATGCC 59.283 38.462 0.00 0.00 0.00 4.40
37 38 8.681486 TGTGATCTGTTAAATGATTAGGGATG 57.319 34.615 0.00 0.00 0.00 3.51
39 40 9.177608 CTTTGTGATCTGTTAAATGATTAGGGA 57.822 33.333 0.00 0.00 0.00 4.20
56 57 6.575162 ACCTCAAATGGTTACTTTGTGATC 57.425 37.500 0.00 0.00 36.89 2.92
63 64 7.940137 TGTACAATGTACCTCAAATGGTTACTT 59.060 33.333 19.53 0.00 41.22 2.24
77 78 8.418662 TGGTTATCTACTGATGTACAATGTACC 58.581 37.037 19.53 6.93 34.32 3.34
85 86 8.965172 CGTGTATTTGGTTATCTACTGATGTAC 58.035 37.037 0.00 0.00 34.32 2.90
93 97 6.270815 TCTCAGCGTGTATTTGGTTATCTAC 58.729 40.000 0.00 0.00 0.00 2.59
96 100 5.810587 TCTTCTCAGCGTGTATTTGGTTATC 59.189 40.000 0.00 0.00 0.00 1.75
98 102 5.142061 TCTTCTCAGCGTGTATTTGGTTA 57.858 39.130 0.00 0.00 0.00 2.85
101 105 4.631377 TCATTCTTCTCAGCGTGTATTTGG 59.369 41.667 0.00 0.00 0.00 3.28
102 106 5.578336 TCTCATTCTTCTCAGCGTGTATTTG 59.422 40.000 0.00 0.00 0.00 2.32
103 107 5.578727 GTCTCATTCTTCTCAGCGTGTATTT 59.421 40.000 0.00 0.00 0.00 1.40
104 108 5.105752 GTCTCATTCTTCTCAGCGTGTATT 58.894 41.667 0.00 0.00 0.00 1.89
105 109 4.158579 TGTCTCATTCTTCTCAGCGTGTAT 59.841 41.667 0.00 0.00 0.00 2.29
106 110 3.506067 TGTCTCATTCTTCTCAGCGTGTA 59.494 43.478 0.00 0.00 0.00 2.90
107 111 2.297315 TGTCTCATTCTTCTCAGCGTGT 59.703 45.455 0.00 0.00 0.00 4.49
108 112 2.665537 GTGTCTCATTCTTCTCAGCGTG 59.334 50.000 0.00 0.00 0.00 5.34
109 113 2.297315 TGTGTCTCATTCTTCTCAGCGT 59.703 45.455 0.00 0.00 0.00 5.07
110 114 2.665537 GTGTGTCTCATTCTTCTCAGCG 59.334 50.000 0.00 0.00 0.00 5.18
116 120 5.689514 CAGATATCGGTGTGTCTCATTCTTC 59.310 44.000 0.00 0.00 0.00 2.87
118 122 4.038522 CCAGATATCGGTGTGTCTCATTCT 59.961 45.833 2.10 0.00 0.00 2.40
128 132 0.694444 AAGGGCCCAGATATCGGTGT 60.694 55.000 27.56 0.00 0.00 4.16
204 208 2.777094 GGCTTTGCCTATCTGATCTCC 58.223 52.381 0.73 0.00 46.69 3.71
267 271 3.711086 ACACAGTATGCTGCTTATCTCG 58.289 45.455 11.09 0.00 46.30 4.04
269 273 4.651503 ACCTACACAGTATGCTGCTTATCT 59.348 41.667 11.09 0.00 46.30 1.98
273 277 2.355108 CCACCTACACAGTATGCTGCTT 60.355 50.000 11.09 0.29 46.30 3.91
278 282 1.429148 GCGCCACCTACACAGTATGC 61.429 60.000 0.00 0.00 42.53 3.14
293 297 4.143333 TACCAGCTCTTCGGCGCC 62.143 66.667 19.07 19.07 37.29 6.53
299 303 0.971447 AGGGGTCGTACCAGCTCTTC 60.971 60.000 6.41 0.00 41.02 2.87
437 441 2.032549 CGATTTATTGGGCGCAGAAGAG 60.033 50.000 10.83 0.00 0.00 2.85
465 469 2.322339 ACCCTAGTTCCTCTCGGTTT 57.678 50.000 0.00 0.00 0.00 3.27
553 557 3.076621 CTGTATGGCTTGCAAGTTCTCA 58.923 45.455 26.55 18.90 0.00 3.27
559 563 1.662629 CGAGTCTGTATGGCTTGCAAG 59.337 52.381 22.44 22.44 0.00 4.01
560 564 1.001974 ACGAGTCTGTATGGCTTGCAA 59.998 47.619 0.00 0.00 35.20 4.08
567 571 2.558378 TCGAGGTACGAGTCTGTATGG 58.442 52.381 0.00 0.00 46.45 2.74
658 662 1.749638 ATCGGCCTCGTCTCGTCTT 60.750 57.895 0.00 0.00 37.69 3.01
712 722 1.383799 CTTGTGGATCCTGGCCCAA 59.616 57.895 14.23 7.16 33.69 4.12
735 745 0.389948 GCTCGTGGACGGTTCAGATT 60.390 55.000 0.00 0.00 40.29 2.40
774 784 4.410400 CTGAAGACCCCACCGGCC 62.410 72.222 0.00 0.00 33.26 6.13
777 787 3.316573 GAGGCTGAAGACCCCACCG 62.317 68.421 0.00 0.00 0.00 4.94
793 805 1.592223 GTTCTGTCGAGGGGGTGAG 59.408 63.158 0.00 0.00 0.00 3.51
851 866 4.729868 TCCCCTCTTTTTCTTCCTTTCTG 58.270 43.478 0.00 0.00 0.00 3.02
905 924 1.305129 TCTGCTGCTCCTCTCTGCT 60.305 57.895 0.00 0.00 0.00 4.24
906 925 1.153588 GTCTGCTGCTCCTCTCTGC 60.154 63.158 0.00 0.00 0.00 4.26
907 926 0.108709 GTGTCTGCTGCTCCTCTCTG 60.109 60.000 0.00 0.00 0.00 3.35
908 927 1.257055 GGTGTCTGCTGCTCCTCTCT 61.257 60.000 0.00 0.00 0.00 3.10
909 928 1.217779 GGTGTCTGCTGCTCCTCTC 59.782 63.158 0.00 0.00 0.00 3.20
961 981 3.849953 GCGAAACCCTAGCGTGCG 61.850 66.667 0.00 0.22 0.00 5.34
995 1020 3.599285 TTCACCACGTCCATCGCCC 62.599 63.158 0.00 0.00 44.19 6.13
998 1023 2.100631 GCCTTCACCACGTCCATCG 61.101 63.158 0.00 0.00 46.00 3.84
1228 1256 2.263540 GACGGCGCAAACCCTAGA 59.736 61.111 10.83 0.00 0.00 2.43
1547 1580 5.163163 TGGCAAGTCCAAGCATATCTAATCT 60.163 40.000 0.00 0.00 43.21 2.40
1548 1581 5.065914 TGGCAAGTCCAAGCATATCTAATC 58.934 41.667 0.00 0.00 43.21 1.75
1610 1644 1.035385 CATGCTCCTTGGCTGCATCA 61.035 55.000 13.79 0.00 44.39 3.07
1740 1774 8.584384 TTGTGTACAAACTGAGAAGAGCTTCTG 61.584 40.741 16.83 6.74 40.23 3.02
2007 2045 7.928908 CAAAGTTTTGTGCTAAATGCTCTTA 57.071 32.000 0.00 0.00 43.37 2.10
2008 2046 6.833342 CAAAGTTTTGTGCTAAATGCTCTT 57.167 33.333 0.00 0.00 43.37 2.85
2022 2060 9.370126 CATTTAGAGAAGTACGACAAAGTTTTG 57.630 33.333 3.17 3.17 43.62 2.44
2023 2061 8.068380 GCATTTAGAGAAGTACGACAAAGTTTT 58.932 33.333 0.00 0.00 0.00 2.43
2024 2062 7.441458 AGCATTTAGAGAAGTACGACAAAGTTT 59.559 33.333 0.00 0.00 0.00 2.66
2025 2063 6.929606 AGCATTTAGAGAAGTACGACAAAGTT 59.070 34.615 0.00 0.00 0.00 2.66
2026 2064 6.456501 AGCATTTAGAGAAGTACGACAAAGT 58.543 36.000 0.00 0.00 0.00 2.66
2027 2065 6.809196 AGAGCATTTAGAGAAGTACGACAAAG 59.191 38.462 0.00 0.00 0.00 2.77
2028 2066 6.688578 AGAGCATTTAGAGAAGTACGACAAA 58.311 36.000 0.00 0.00 0.00 2.83
2029 2067 6.268825 AGAGCATTTAGAGAAGTACGACAA 57.731 37.500 0.00 0.00 0.00 3.18
2030 2068 5.899120 AGAGCATTTAGAGAAGTACGACA 57.101 39.130 0.00 0.00 0.00 4.35
2060 2106 7.800300 ACTCCCTCTGTAAAGAAGTTTAGAT 57.200 36.000 0.00 0.00 0.00 1.98
2061 2107 7.727186 TGTACTCCCTCTGTAAAGAAGTTTAGA 59.273 37.037 0.00 0.00 0.00 2.10
2062 2108 7.893658 TGTACTCCCTCTGTAAAGAAGTTTAG 58.106 38.462 0.00 0.00 0.00 1.85
2063 2109 7.844493 TGTACTCCCTCTGTAAAGAAGTTTA 57.156 36.000 0.00 0.00 0.00 2.01
2064 2110 6.742559 TGTACTCCCTCTGTAAAGAAGTTT 57.257 37.500 0.00 0.00 0.00 2.66
2065 2111 6.742559 TTGTACTCCCTCTGTAAAGAAGTT 57.257 37.500 0.00 0.00 0.00 2.66
2066 2112 6.742559 TTTGTACTCCCTCTGTAAAGAAGT 57.257 37.500 0.00 0.00 0.00 3.01
2067 2113 8.532819 ACTATTTGTACTCCCTCTGTAAAGAAG 58.467 37.037 0.00 0.00 0.00 2.85
2068 2114 8.431910 ACTATTTGTACTCCCTCTGTAAAGAA 57.568 34.615 0.00 0.00 0.00 2.52
2069 2115 7.148120 CGACTATTTGTACTCCCTCTGTAAAGA 60.148 40.741 0.00 0.00 0.00 2.52
2120 2167 8.648557 AGCAGAACTGAAGGAAAAATAAAAAC 57.351 30.769 5.97 0.00 0.00 2.43
2141 2188 2.277969 CATTGCTCTGGACAGTAGCAG 58.722 52.381 18.62 10.24 40.19 4.24
2163 2210 6.721318 TCTACATAAGGCCATCAGAACTTTT 58.279 36.000 5.01 0.00 0.00 2.27
2232 2279 5.300286 ACTGTAATGCCTAAGATTGCCAATC 59.700 40.000 9.45 9.45 38.20 2.67
2344 2391 3.105937 GTCGGTTCAAGCAAACAAGTTC 58.894 45.455 0.00 0.00 0.00 3.01
2404 2454 5.941948 AACACTGTTCTTTTATCTTCCGG 57.058 39.130 0.00 0.00 0.00 5.14
2478 2549 3.650942 ACTTCCATCACTAAACCCAGTCA 59.349 43.478 0.00 0.00 0.00 3.41
2489 2560 5.491982 AGAAAAAGCGATACTTCCATCACT 58.508 37.500 0.00 0.00 37.75 3.41
2504 2575 9.822185 AATTCAATAATCACCCATAGAAAAAGC 57.178 29.630 0.00 0.00 0.00 3.51
2513 2584 6.204555 ACAAGGGAATTCAATAATCACCCAT 58.795 36.000 7.93 0.00 40.83 4.00
2514 2585 5.588845 ACAAGGGAATTCAATAATCACCCA 58.411 37.500 7.93 0.00 40.83 4.51
2515 2586 6.544928 AACAAGGGAATTCAATAATCACCC 57.455 37.500 7.93 0.00 39.72 4.61
2516 2587 7.684428 GCCTAACAAGGGAATTCAATAATCACC 60.684 40.741 7.93 0.00 0.00 4.02
2517 2588 7.203218 GCCTAACAAGGGAATTCAATAATCAC 58.797 38.462 7.93 0.00 0.00 3.06
2518 2589 6.039270 CGCCTAACAAGGGAATTCAATAATCA 59.961 38.462 7.93 0.00 0.00 2.57
2519 2590 6.438763 CGCCTAACAAGGGAATTCAATAATC 58.561 40.000 7.93 0.00 0.00 1.75
2520 2591 5.221244 GCGCCTAACAAGGGAATTCAATAAT 60.221 40.000 7.93 0.00 0.00 1.28
2522 2593 3.630312 GCGCCTAACAAGGGAATTCAATA 59.370 43.478 7.93 0.00 0.00 1.90
2523 2594 2.427095 GCGCCTAACAAGGGAATTCAAT 59.573 45.455 7.93 0.00 0.00 2.57
2527 2641 2.215942 AAGCGCCTAACAAGGGAATT 57.784 45.000 2.29 0.00 0.00 2.17
2571 2685 4.365723 AGCTGCACAATGTGAAGAAAAAG 58.634 39.130 24.76 6.93 41.52 2.27
2580 2694 2.751259 AGGAACATAGCTGCACAATGTG 59.249 45.455 9.36 9.36 34.20 3.21
2723 2837 6.095440 ACATTAGTGAAGCCGAATAAGCAAAT 59.905 34.615 0.00 0.00 0.00 2.32
2764 2878 5.698089 TGACTTTTCTGAGTAGCATTCTGTG 59.302 40.000 0.00 0.00 0.00 3.66
2822 2936 0.035439 TTTCCTCGACTTCATGGGCC 60.035 55.000 0.00 0.00 0.00 5.80
2879 2993 1.153784 GTGCCAAACATGATGCCCG 60.154 57.895 0.00 0.00 0.00 6.13
2910 3024 8.013947 CAGAAAGTGTGACTGAACTATTGAATG 58.986 37.037 0.00 0.00 34.07 2.67
2929 3043 4.615513 AGTGACCTAGCCTATCAGAAAGT 58.384 43.478 0.00 0.00 0.00 2.66
2941 3055 3.045601 TCTTGCAGAAAGTGACCTAGC 57.954 47.619 0.00 0.00 37.18 3.42
2942 3056 5.702670 TGATTTCTTGCAGAAAGTGACCTAG 59.297 40.000 13.99 0.00 46.15 3.02
2943 3057 5.620206 TGATTTCTTGCAGAAAGTGACCTA 58.380 37.500 13.99 0.00 46.15 3.08
2944 3058 4.464008 TGATTTCTTGCAGAAAGTGACCT 58.536 39.130 13.99 0.88 46.15 3.85
2974 3089 8.963725 CCGATATGGTACCAGTTACAGATATAA 58.036 37.037 21.41 0.00 31.46 0.98
2975 3090 8.515695 CCGATATGGTACCAGTTACAGATATA 57.484 38.462 21.41 3.86 31.46 0.86
3052 3188 1.532604 CGCTACTCAGTGGGTCACCA 61.533 60.000 0.00 0.00 46.94 4.17
3508 3737 6.087291 CACAAACAGAAGAAAAGATCGAATGC 59.913 38.462 0.00 0.00 0.00 3.56
3617 3846 7.338710 TCATCCCAGACAACCTTTAAGAATAG 58.661 38.462 0.00 0.00 0.00 1.73
3688 3917 7.413877 GCATCACATTTTTCTTCCTGAGAGTAG 60.414 40.741 0.00 0.00 35.37 2.57
3691 3920 5.415077 AGCATCACATTTTTCTTCCTGAGAG 59.585 40.000 0.00 0.00 35.37 3.20
3696 3925 4.326826 TCGAGCATCACATTTTTCTTCCT 58.673 39.130 0.00 0.00 33.17 3.36
3706 3935 2.621055 GGAGAGTACTCGAGCATCACAT 59.379 50.000 17.07 0.00 43.44 3.21
3737 3966 5.953183 TCAATCGCTAAAAAGCATCACAAT 58.047 33.333 0.00 0.00 34.41 2.71
3767 3996 6.404734 GCACAACTTTCACATATTCCTAAGGG 60.405 42.308 0.00 0.00 0.00 3.95
3778 4007 2.760092 ACTGGTTGCACAACTTTCACAT 59.240 40.909 12.87 0.00 40.94 3.21
3779 4008 2.094803 CACTGGTTGCACAACTTTCACA 60.095 45.455 12.87 2.08 40.94 3.58
3780 4009 2.163412 TCACTGGTTGCACAACTTTCAC 59.837 45.455 12.87 0.00 40.94 3.18
3817 4047 1.415200 CCAGAAGGGCCTAGGAGTAC 58.585 60.000 14.75 0.00 0.00 2.73
3888 4123 9.770097 CTCTCTTCTTAATTATCTTGCCACATA 57.230 33.333 0.00 0.00 0.00 2.29
4026 4269 3.780804 TGGGTGCTTAGCTTCTTGTTA 57.219 42.857 5.60 0.00 0.00 2.41
4054 4297 0.900647 ACACGCACTAAGGCCTCTCT 60.901 55.000 5.23 0.00 0.00 3.10
4074 4317 1.810151 GCGGAAACTGCTGGTGATAAA 59.190 47.619 0.00 0.00 0.00 1.40
4075 4318 1.448985 GCGGAAACTGCTGGTGATAA 58.551 50.000 0.00 0.00 0.00 1.75
4082 4325 1.453155 ACTTATGGCGGAAACTGCTG 58.547 50.000 0.00 0.00 0.00 4.41
4097 4340 3.243873 CGCATCCTATCTGCCTCAACTTA 60.244 47.826 0.00 0.00 36.24 2.24
4103 4346 1.337635 CCTTCGCATCCTATCTGCCTC 60.338 57.143 0.00 0.00 36.24 4.70
4137 4380 6.496565 TCCCAAAACCAAAGTGATGTATTGAT 59.503 34.615 0.00 0.00 0.00 2.57
4157 4400 8.295597 ACCACCCAAAATATAGTATATCCCAA 57.704 34.615 3.09 0.00 0.00 4.12
4158 4401 7.898470 ACCACCCAAAATATAGTATATCCCA 57.102 36.000 3.09 0.00 0.00 4.37
4174 4417 6.865834 ATAAAGCATGATTTAACCACCCAA 57.134 33.333 19.15 0.00 0.00 4.12
4235 4478 6.653020 AGTGGTGAAGCTACAATATGATCAA 58.347 36.000 0.00 0.00 0.00 2.57
4323 4566 8.435430 TCGCTAAAAATATCAAGCATTATCTCG 58.565 33.333 0.00 0.00 34.60 4.04
4353 4596 7.479980 ACGAATTTTGAATTGTTCTCAACTCA 58.520 30.769 0.00 0.00 37.89 3.41
4366 4612 5.301805 ACAGAACTTGGGACGAATTTTGAAT 59.698 36.000 0.00 0.00 0.00 2.57
4377 4623 3.498777 GCTTCAGTAACAGAACTTGGGAC 59.501 47.826 0.00 0.00 0.00 4.46
4384 4630 5.983720 TGTAGAACTGCTTCAGTAACAGAAC 59.016 40.000 0.00 0.84 44.62 3.01
4544 4792 0.479378 AGGGGAAAACAAGCCGGTTA 59.521 50.000 1.90 0.00 0.00 2.85
4565 4813 5.237048 GCAATAAGCAAACCCAGAAAATGA 58.763 37.500 0.00 0.00 44.79 2.57
4738 4986 4.870021 AGCTAAGGATGGAAGAATTGGT 57.130 40.909 0.00 0.00 0.00 3.67
4744 4992 6.558775 ACACCAATATAGCTAAGGATGGAAGA 59.441 38.462 19.23 0.00 0.00 2.87
4834 5087 4.951715 AGCATCTGCAAGGAATCACATAAA 59.048 37.500 4.79 0.00 45.16 1.40
4841 5095 4.970662 TGTTTAGCATCTGCAAGGAATC 57.029 40.909 4.79 0.00 45.16 2.52
4849 5103 4.156556 TCATGTTCCTTGTTTAGCATCTGC 59.843 41.667 0.00 0.00 42.49 4.26
4870 5124 1.275666 TCAAATCCTCGGCCTTCTCA 58.724 50.000 0.00 0.00 0.00 3.27
4915 5169 1.366319 ACAAGGACATTCAGCTCCCT 58.634 50.000 0.00 0.00 0.00 4.20
4944 5198 3.068873 GGTCATAGATCGCTATCCCCATC 59.931 52.174 0.00 0.00 35.13 3.51
4973 5227 1.341482 TGTCACAGTTTCTTTGCCCCA 60.341 47.619 0.00 0.00 0.00 4.96
4977 5231 4.676924 GCTAACATGTCACAGTTTCTTTGC 59.323 41.667 0.00 0.00 0.00 3.68
4978 5232 5.820131 TGCTAACATGTCACAGTTTCTTTG 58.180 37.500 0.00 0.00 0.00 2.77
5066 5320 2.702592 AGGTTTTGTCGTTGACCTCA 57.297 45.000 0.00 0.00 38.03 3.86
5152 5406 0.179192 CCGCATCACAAACCATGACG 60.179 55.000 0.00 0.00 0.00 4.35
5207 5461 4.036734 AGACAACATTGTAAACTGGCAGTG 59.963 41.667 22.83 9.23 42.43 3.66
5273 5531 6.049149 GGAAATCGACTCAATGTTCCATCTA 58.951 40.000 0.00 0.00 35.61 1.98
5274 5532 4.878397 GGAAATCGACTCAATGTTCCATCT 59.122 41.667 0.00 0.00 35.61 2.90
5275 5533 4.878397 AGGAAATCGACTCAATGTTCCATC 59.122 41.667 0.00 0.00 37.57 3.51
5276 5534 4.848357 AGGAAATCGACTCAATGTTCCAT 58.152 39.130 0.00 0.00 37.57 3.41
5277 5535 4.286297 AGGAAATCGACTCAATGTTCCA 57.714 40.909 0.00 0.00 37.57 3.53
5278 5536 4.142600 CCAAGGAAATCGACTCAATGTTCC 60.143 45.833 0.00 0.00 35.74 3.62
5279 5537 4.455877 ACCAAGGAAATCGACTCAATGTTC 59.544 41.667 0.00 0.00 0.00 3.18
5280 5538 4.398319 ACCAAGGAAATCGACTCAATGTT 58.602 39.130 0.00 0.00 0.00 2.71
5281 5539 4.021102 ACCAAGGAAATCGACTCAATGT 57.979 40.909 0.00 0.00 0.00 2.71
5282 5540 6.494893 TTTACCAAGGAAATCGACTCAATG 57.505 37.500 0.00 0.00 0.00 2.82
5283 5541 7.703058 ATTTTACCAAGGAAATCGACTCAAT 57.297 32.000 0.00 0.00 0.00 2.57
5284 5542 7.519032 AATTTTACCAAGGAAATCGACTCAA 57.481 32.000 0.00 0.00 0.00 3.02
5285 5543 7.519032 AAATTTTACCAAGGAAATCGACTCA 57.481 32.000 0.00 0.00 0.00 3.41
5286 5544 8.079809 TCAAAATTTTACCAAGGAAATCGACTC 58.920 33.333 2.44 0.00 0.00 3.36
5287 5545 7.865889 GTCAAAATTTTACCAAGGAAATCGACT 59.134 33.333 2.44 0.00 0.00 4.18
5288 5546 7.650104 TGTCAAAATTTTACCAAGGAAATCGAC 59.350 33.333 2.44 3.13 0.00 4.20
5297 5555 7.872483 ACCAAGCTATGTCAAAATTTTACCAAG 59.128 33.333 2.44 5.40 0.00 3.61
5299 5557 7.296628 ACCAAGCTATGTCAAAATTTTACCA 57.703 32.000 2.44 3.79 0.00 3.25
5300 5558 8.520351 AGTACCAAGCTATGTCAAAATTTTACC 58.480 33.333 2.44 0.00 0.00 2.85
5306 5564 9.113838 CTTATCAGTACCAAGCTATGTCAAAAT 57.886 33.333 0.00 0.00 0.00 1.82
5328 5586 5.837437 TCGTTTGTTGTTTGATTGCCTTAT 58.163 33.333 0.00 0.00 0.00 1.73
5344 5602 5.576384 TGTACAAGTACGTTCTTTCGTTTGT 59.424 36.000 4.51 11.79 42.86 2.83
5412 5680 5.392380 GGTGATTTCCTGTATCTTGCTGTTG 60.392 44.000 0.00 0.00 0.00 3.33
5414 5682 4.018960 AGGTGATTTCCTGTATCTTGCTGT 60.019 41.667 0.00 0.00 36.35 4.40
5415 5683 4.334759 CAGGTGATTTCCTGTATCTTGCTG 59.665 45.833 4.75 0.00 46.92 4.41
5417 5685 4.889832 CAGGTGATTTCCTGTATCTTGC 57.110 45.455 4.75 0.00 46.92 4.01
5429 5699 4.164796 TCACAGCCATCTATCAGGTGATTT 59.835 41.667 0.00 0.00 36.05 2.17
5432 5702 2.697229 CTCACAGCCATCTATCAGGTGA 59.303 50.000 0.00 0.00 33.30 4.02
5438 5708 3.257127 GGAGTACCTCACAGCCATCTATC 59.743 52.174 0.00 0.00 31.08 2.08
5440 5710 2.667470 GGAGTACCTCACAGCCATCTA 58.333 52.381 0.00 0.00 31.08 1.98
5471 5741 9.712305 CCGTCTAAATCTCCACATCTTATATTT 57.288 33.333 0.00 0.00 0.00 1.40
5472 5742 9.090103 TCCGTCTAAATCTCCACATCTTATATT 57.910 33.333 0.00 0.00 0.00 1.28
5473 5743 8.524487 GTCCGTCTAAATCTCCACATCTTATAT 58.476 37.037 0.00 0.00 0.00 0.86
5474 5744 7.724506 AGTCCGTCTAAATCTCCACATCTTATA 59.275 37.037 0.00 0.00 0.00 0.98
5475 5745 6.551601 AGTCCGTCTAAATCTCCACATCTTAT 59.448 38.462 0.00 0.00 0.00 1.73
5476 5746 5.892119 AGTCCGTCTAAATCTCCACATCTTA 59.108 40.000 0.00 0.00 0.00 2.10
5477 5747 4.712337 AGTCCGTCTAAATCTCCACATCTT 59.288 41.667 0.00 0.00 0.00 2.40
5478 5748 4.098654 CAGTCCGTCTAAATCTCCACATCT 59.901 45.833 0.00 0.00 0.00 2.90
5479 5749 4.098044 TCAGTCCGTCTAAATCTCCACATC 59.902 45.833 0.00 0.00 0.00 3.06
5480 5750 4.023980 TCAGTCCGTCTAAATCTCCACAT 58.976 43.478 0.00 0.00 0.00 3.21
5481 5751 3.427573 TCAGTCCGTCTAAATCTCCACA 58.572 45.455 0.00 0.00 0.00 4.17
5482 5752 4.451629 TTCAGTCCGTCTAAATCTCCAC 57.548 45.455 0.00 0.00 0.00 4.02
5483 5753 5.677319 ATTTCAGTCCGTCTAAATCTCCA 57.323 39.130 0.00 0.00 0.00 3.86
5484 5754 8.552034 CATTTATTTCAGTCCGTCTAAATCTCC 58.448 37.037 0.00 0.00 0.00 3.71
5485 5755 9.314321 TCATTTATTTCAGTCCGTCTAAATCTC 57.686 33.333 0.00 0.00 0.00 2.75
5486 5756 9.667107 TTCATTTATTTCAGTCCGTCTAAATCT 57.333 29.630 0.00 0.00 0.00 2.40
5487 5757 9.704098 GTTCATTTATTTCAGTCCGTCTAAATC 57.296 33.333 0.00 0.00 0.00 2.17
5488 5758 9.226606 TGTTCATTTATTTCAGTCCGTCTAAAT 57.773 29.630 0.00 0.00 0.00 1.40
5489 5759 8.610248 TGTTCATTTATTTCAGTCCGTCTAAA 57.390 30.769 0.00 0.00 0.00 1.85
5490 5760 8.610248 TTGTTCATTTATTTCAGTCCGTCTAA 57.390 30.769 0.00 0.00 0.00 2.10
5491 5761 8.610248 TTTGTTCATTTATTTCAGTCCGTCTA 57.390 30.769 0.00 0.00 0.00 2.59
5492 5762 7.504924 TTTGTTCATTTATTTCAGTCCGTCT 57.495 32.000 0.00 0.00 0.00 4.18
5493 5763 7.646130 TGTTTTGTTCATTTATTTCAGTCCGTC 59.354 33.333 0.00 0.00 0.00 4.79
5494 5764 7.434013 GTGTTTTGTTCATTTATTTCAGTCCGT 59.566 33.333 0.00 0.00 0.00 4.69
5495 5765 7.433719 TGTGTTTTGTTCATTTATTTCAGTCCG 59.566 33.333 0.00 0.00 0.00 4.79
5496 5766 8.641499 TGTGTTTTGTTCATTTATTTCAGTCC 57.359 30.769 0.00 0.00 0.00 3.85
5497 5767 9.301153 ACTGTGTTTTGTTCATTTATTTCAGTC 57.699 29.630 0.00 0.00 0.00 3.51
5506 5776 9.213799 ACATGTTTTACTGTGTTTTGTTCATTT 57.786 25.926 0.00 0.00 0.00 2.32
5507 5777 8.770438 ACATGTTTTACTGTGTTTTGTTCATT 57.230 26.923 0.00 0.00 0.00 2.57
5508 5778 8.250332 AGACATGTTTTACTGTGTTTTGTTCAT 58.750 29.630 0.00 0.00 0.00 2.57
5509 5779 7.598278 AGACATGTTTTACTGTGTTTTGTTCA 58.402 30.769 0.00 0.00 0.00 3.18
5510 5780 9.730420 ATAGACATGTTTTACTGTGTTTTGTTC 57.270 29.630 0.00 0.00 0.00 3.18
5527 5797 9.539194 TCCTGAATCAGATGTATATAGACATGT 57.461 33.333 17.40 10.87 40.18 3.21
5552 5822 8.596271 AAGCTGTTCTTCTAGTAACTTCTTTC 57.404 34.615 0.00 0.00 0.00 2.62
5562 5832 9.944376 TTGACAAATATAAGCTGTTCTTCTAGT 57.056 29.630 0.00 0.00 36.25 2.57
5564 5834 8.869897 CGTTGACAAATATAAGCTGTTCTTCTA 58.130 33.333 0.00 0.00 36.25 2.10
5565 5835 7.148407 CCGTTGACAAATATAAGCTGTTCTTCT 60.148 37.037 0.00 0.00 36.25 2.85
5566 5836 6.961554 CCGTTGACAAATATAAGCTGTTCTTC 59.038 38.462 0.00 0.00 36.25 2.87
5567 5837 6.653320 TCCGTTGACAAATATAAGCTGTTCTT 59.347 34.615 0.00 0.00 38.79 2.52
5574 5844 5.585047 ACTTCCTCCGTTGACAAATATAAGC 59.415 40.000 0.00 0.00 0.00 3.09
5586 5856 6.338146 TGAATATGAACTACTTCCTCCGTTG 58.662 40.000 0.00 0.00 0.00 4.10
5593 5863 9.436957 TCAGAAGTTTGAATATGAACTACTTCC 57.563 33.333 0.00 0.00 40.32 3.46
5599 5869 6.944862 AGGCTTCAGAAGTTTGAATATGAACT 59.055 34.615 11.94 0.00 36.55 3.01
5600 5870 7.150783 AGGCTTCAGAAGTTTGAATATGAAC 57.849 36.000 11.94 0.00 36.55 3.18
5601 5871 7.596494 CAAGGCTTCAGAAGTTTGAATATGAA 58.404 34.615 17.83 0.00 36.55 2.57
5603 5873 5.803967 GCAAGGCTTCAGAAGTTTGAATATG 59.196 40.000 23.13 10.11 36.55 1.78
5604 5874 5.713861 AGCAAGGCTTCAGAAGTTTGAATAT 59.286 36.000 23.13 10.09 33.89 1.28
5607 5877 3.290710 AGCAAGGCTTCAGAAGTTTGAA 58.709 40.909 23.13 4.15 33.89 2.69
5610 5880 4.916183 AGATAGCAAGGCTTCAGAAGTTT 58.084 39.130 11.94 4.41 40.44 2.66
5611 5881 4.512484 GAGATAGCAAGGCTTCAGAAGTT 58.488 43.478 11.94 0.00 40.44 2.66
5612 5882 3.118445 GGAGATAGCAAGGCTTCAGAAGT 60.118 47.826 11.94 0.00 40.44 3.01
5615 5885 2.433604 CTGGAGATAGCAAGGCTTCAGA 59.566 50.000 0.00 0.00 40.44 3.27
5616 5886 2.433604 TCTGGAGATAGCAAGGCTTCAG 59.566 50.000 0.00 0.00 40.44 3.02
5618 5888 3.767902 ATCTGGAGATAGCAAGGCTTC 57.232 47.619 0.00 0.00 40.44 3.86
5619 5889 4.657969 ACTAATCTGGAGATAGCAAGGCTT 59.342 41.667 0.00 0.00 40.44 4.35
5620 5890 4.230455 ACTAATCTGGAGATAGCAAGGCT 58.770 43.478 0.00 0.00 43.41 4.58
5621 5891 4.615588 ACTAATCTGGAGATAGCAAGGC 57.384 45.455 0.00 0.00 33.73 4.35
5622 5892 5.070981 TGGAACTAATCTGGAGATAGCAAGG 59.929 44.000 0.00 0.00 33.73 3.61
5623 5893 6.166984 TGGAACTAATCTGGAGATAGCAAG 57.833 41.667 0.00 0.00 33.73 4.01
5649 6068 8.553459 ACAGTGGAGTAGATAACAAATTCAAG 57.447 34.615 0.00 0.00 0.00 3.02
5665 6084 0.748450 TTCGGTTTCGACAGTGGAGT 59.252 50.000 0.00 0.00 45.92 3.85
5668 6087 1.196808 CCAATTCGGTTTCGACAGTGG 59.803 52.381 0.00 0.00 45.92 4.00
5669 6088 2.139917 TCCAATTCGGTTTCGACAGTG 58.860 47.619 0.00 0.00 45.92 3.66
5670 6089 2.536761 TCCAATTCGGTTTCGACAGT 57.463 45.000 0.00 0.00 45.92 3.55
5671 6090 4.158384 CAATTCCAATTCGGTTTCGACAG 58.842 43.478 0.00 0.00 45.92 3.51
5672 6091 3.057876 CCAATTCCAATTCGGTTTCGACA 60.058 43.478 0.00 0.00 45.92 4.35
5673 6092 3.189702 TCCAATTCCAATTCGGTTTCGAC 59.810 43.478 0.00 0.00 45.92 4.20
5674 6093 3.413327 TCCAATTCCAATTCGGTTTCGA 58.587 40.909 0.00 0.00 44.44 3.71
5675 6094 3.840890 TCCAATTCCAATTCGGTTTCG 57.159 42.857 0.00 0.00 35.57 3.46
5744 6163 7.889873 TCCCATCTTTAAAACTTCAGTTGAA 57.110 32.000 0.00 0.00 38.44 2.69
5745 6164 7.468084 CGTTCCCATCTTTAAAACTTCAGTTGA 60.468 37.037 0.00 0.00 38.44 3.18
5746 6165 6.636850 CGTTCCCATCTTTAAAACTTCAGTTG 59.363 38.462 0.00 0.00 38.44 3.16
5747 6166 6.734871 GCGTTCCCATCTTTAAAACTTCAGTT 60.735 38.462 0.00 0.00 40.50 3.16
5748 6167 5.278315 GCGTTCCCATCTTTAAAACTTCAGT 60.278 40.000 0.00 0.00 0.00 3.41
5749 6168 5.154222 GCGTTCCCATCTTTAAAACTTCAG 58.846 41.667 0.00 0.00 0.00 3.02
5758 6179 0.320858 TGTGCGCGTTCCCATCTTTA 60.321 50.000 8.43 0.00 0.00 1.85
5761 6182 1.884075 TACTGTGCGCGTTCCCATCT 61.884 55.000 8.43 0.00 0.00 2.90
5762 6183 1.421410 CTACTGTGCGCGTTCCCATC 61.421 60.000 8.43 0.00 0.00 3.51
5763 6184 1.447838 CTACTGTGCGCGTTCCCAT 60.448 57.895 8.43 0.00 0.00 4.00
5764 6185 2.048597 CTACTGTGCGCGTTCCCA 60.049 61.111 8.43 0.00 0.00 4.37
5776 6197 1.274728 AGGCTGAGTTGAGTGCTACTG 59.725 52.381 0.00 0.00 30.20 2.74
5782 6203 0.248843 GGAGGAGGCTGAGTTGAGTG 59.751 60.000 0.00 0.00 0.00 3.51
5808 6231 0.603569 GCGAGAGAGGAACACAAGGA 59.396 55.000 0.00 0.00 0.00 3.36
5809 6232 0.390472 GGCGAGAGAGGAACACAAGG 60.390 60.000 0.00 0.00 0.00 3.61
5810 6233 0.734253 CGGCGAGAGAGGAACACAAG 60.734 60.000 0.00 0.00 0.00 3.16
5811 6234 1.289066 CGGCGAGAGAGGAACACAA 59.711 57.895 0.00 0.00 0.00 3.33
5812 6235 1.901948 ACGGCGAGAGAGGAACACA 60.902 57.895 16.62 0.00 0.00 3.72
5813 6236 1.444553 CACGGCGAGAGAGGAACAC 60.445 63.158 16.62 0.00 0.00 3.32
5814 6237 2.962569 CACGGCGAGAGAGGAACA 59.037 61.111 16.62 0.00 0.00 3.18
5815 6238 2.507324 GCACGGCGAGAGAGGAAC 60.507 66.667 16.62 0.00 0.00 3.62
5816 6239 3.760035 GGCACGGCGAGAGAGGAA 61.760 66.667 16.62 0.00 0.00 3.36
5818 6241 4.069232 TTGGCACGGCGAGAGAGG 62.069 66.667 16.62 0.00 0.00 3.69
5819 6242 2.811317 GTTGGCACGGCGAGAGAG 60.811 66.667 16.62 0.00 0.00 3.20
5820 6243 4.373116 GGTTGGCACGGCGAGAGA 62.373 66.667 16.62 0.00 0.00 3.10
5888 6311 4.200283 CGACGAGCTCTCTGGGCC 62.200 72.222 12.85 0.00 0.00 5.80
5899 6322 1.184349 GAGCGAGATTTGTCGACGAG 58.816 55.000 11.62 0.00 42.85 4.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.