Multiple sequence alignment - TraesCS2B01G523500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G523500 chr2B 100.000 2342 0 0 1 2342 718215796 718213455 0.000000e+00 4325
1 TraesCS2B01G523500 chr2B 91.379 406 33 2 1937 2342 718194453 718194050 2.630000e-154 555
2 TraesCS2B01G523500 chr2A 90.041 723 44 14 640 1338 726954779 726954061 0.000000e+00 911
3 TraesCS2B01G523500 chr2A 87.059 340 26 11 1347 1672 726954012 726953677 3.680000e-98 368
4 TraesCS2B01G523500 chr1A 91.577 653 49 2 1 650 22645241 22645890 0.000000e+00 896
5 TraesCS2B01G523500 chr1A 88.408 647 74 1 1 647 509705724 509706369 0.000000e+00 778
6 TraesCS2B01G523500 chr1A 88.408 647 74 1 1 647 509778989 509779634 0.000000e+00 778
7 TraesCS2B01G523500 chr4B 90.169 651 55 8 1 647 576426654 576427299 0.000000e+00 839
8 TraesCS2B01G523500 chr4B 91.011 623 51 4 28 647 237077660 237078280 0.000000e+00 835
9 TraesCS2B01G523500 chr4B 89.231 650 67 1 1 647 529569154 529569803 0.000000e+00 809
10 TraesCS2B01G523500 chr5B 88.922 668 63 9 1 663 423735272 423735933 0.000000e+00 813
11 TraesCS2B01G523500 chr5B 89.127 653 67 4 1 651 407220888 407221538 0.000000e+00 809
12 TraesCS2B01G523500 chr5B 86.241 407 51 5 1937 2342 419407008 419406606 9.940000e-119 436
13 TraesCS2B01G523500 chr3A 89.214 649 67 2 1 647 26849260 26849907 0.000000e+00 808
14 TraesCS2B01G523500 chr2D 92.979 527 20 5 833 1346 592376655 592376133 0.000000e+00 752
15 TraesCS2B01G523500 chr2D 88.099 605 39 16 1347 1939 592376103 592375520 0.000000e+00 688
16 TraesCS2B01G523500 chr2D 94.000 100 3 1 647 743 592396759 592396660 5.210000e-32 148
17 TraesCS2B01G523500 chr2D 98.630 73 1 0 771 843 592377978 592377906 1.890000e-26 130
18 TraesCS2B01G523500 chr7A 89.578 403 36 6 1941 2340 735125811 735125412 7.470000e-140 507
19 TraesCS2B01G523500 chr6B 89.163 406 37 7 1939 2342 594544296 594544696 1.250000e-137 499
20 TraesCS2B01G523500 chr6B 87.841 403 44 5 1939 2340 594538765 594539163 3.520000e-128 468
21 TraesCS2B01G523500 chr7B 88.293 410 47 1 1933 2342 447600034 447599626 7.520000e-135 490
22 TraesCS2B01G523500 chr7B 87.376 404 46 5 1940 2342 88336845 88336446 2.120000e-125 459
23 TraesCS2B01G523500 chr3B 87.229 415 45 5 1934 2342 703208947 703209359 1.270000e-127 466
24 TraesCS2B01G523500 chrUn 87.293 362 46 0 1934 2295 15650264 15650625 4.660000e-112 414


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G523500 chr2B 718213455 718215796 2341 True 4325.000000 4325 100.000 1 2342 1 chr2B.!!$R2 2341
1 TraesCS2B01G523500 chr2A 726953677 726954779 1102 True 639.500000 911 88.550 640 1672 2 chr2A.!!$R1 1032
2 TraesCS2B01G523500 chr1A 22645241 22645890 649 False 896.000000 896 91.577 1 650 1 chr1A.!!$F1 649
3 TraesCS2B01G523500 chr1A 509705724 509706369 645 False 778.000000 778 88.408 1 647 1 chr1A.!!$F2 646
4 TraesCS2B01G523500 chr1A 509778989 509779634 645 False 778.000000 778 88.408 1 647 1 chr1A.!!$F3 646
5 TraesCS2B01G523500 chr4B 576426654 576427299 645 False 839.000000 839 90.169 1 647 1 chr4B.!!$F3 646
6 TraesCS2B01G523500 chr4B 237077660 237078280 620 False 835.000000 835 91.011 28 647 1 chr4B.!!$F1 619
7 TraesCS2B01G523500 chr4B 529569154 529569803 649 False 809.000000 809 89.231 1 647 1 chr4B.!!$F2 646
8 TraesCS2B01G523500 chr5B 423735272 423735933 661 False 813.000000 813 88.922 1 663 1 chr5B.!!$F2 662
9 TraesCS2B01G523500 chr5B 407220888 407221538 650 False 809.000000 809 89.127 1 651 1 chr5B.!!$F1 650
10 TraesCS2B01G523500 chr3A 26849260 26849907 647 False 808.000000 808 89.214 1 647 1 chr3A.!!$F1 646
11 TraesCS2B01G523500 chr2D 592375520 592377978 2458 True 523.333333 752 93.236 771 1939 3 chr2D.!!$R2 1168

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
758 788 0.672342 ACGCCGTGTTTCTGTAGTCT 59.328 50.0 0.0 0.0 0.0 3.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2178 3552 0.10852 TCGTTTATGGCCTGTCGGAC 60.109 55.0 3.32 0.0 39.55 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
212 213 4.007644 CTCCAGCAGGCGGTCACA 62.008 66.667 0.00 0.00 33.74 3.58
227 228 4.892965 ACAGCCAACCTTGCCGCA 62.893 61.111 0.00 0.00 0.00 5.69
277 278 2.795297 CGAGGAGCAGAGGTCGAC 59.205 66.667 7.13 7.13 34.28 4.20
354 355 2.517450 CCGCGAGCTCGTCCATTTC 61.517 63.158 34.46 16.63 42.22 2.17
551 563 5.732247 GCAGTTTCATGTACGGTTTCTGTTT 60.732 40.000 0.00 0.00 0.00 2.83
571 583 2.023461 CCGCGCACGTTTTTGACA 59.977 55.556 8.75 0.00 37.70 3.58
604 616 3.784338 TCTTTGTCGAACTGTAAACGGT 58.216 40.909 0.00 0.00 36.96 4.83
638 650 2.210961 GATTTTACGGGGTCTGCTAGC 58.789 52.381 8.10 8.10 0.00 3.42
683 696 0.884704 TGGAGGTGCTCGCTTTGAAC 60.885 55.000 0.00 0.00 0.00 3.18
737 753 0.876342 GGGACATTAGCTTCGCTCGG 60.876 60.000 0.00 0.00 40.44 4.63
753 783 3.727146 GGAACGCCGTGTTTCTGT 58.273 55.556 0.00 0.00 42.09 3.41
754 784 2.903284 GGAACGCCGTGTTTCTGTA 58.097 52.632 0.00 0.00 42.09 2.74
755 785 0.788391 GGAACGCCGTGTTTCTGTAG 59.212 55.000 0.00 0.00 42.09 2.74
756 786 1.494824 GAACGCCGTGTTTCTGTAGT 58.505 50.000 0.00 0.00 42.09 2.73
757 787 1.454653 GAACGCCGTGTTTCTGTAGTC 59.545 52.381 0.00 0.00 42.09 2.59
758 788 0.672342 ACGCCGTGTTTCTGTAGTCT 59.328 50.000 0.00 0.00 0.00 3.24
882 2173 3.004629 CAGCAAGCACAACCATTTACTCA 59.995 43.478 0.00 0.00 0.00 3.41
927 2218 2.095819 TCGTGTATAAACGACGCACTCA 60.096 45.455 14.19 0.00 46.99 3.41
951 2243 1.134007 TCTATCACTTCCCCGTCGCTA 60.134 52.381 0.00 0.00 0.00 4.26
993 2298 1.670791 ACAACACCACCACTAAACCG 58.329 50.000 0.00 0.00 0.00 4.44
1005 2310 1.202952 ACTAAACCGGAAACCATGGCA 60.203 47.619 13.04 0.00 0.00 4.92
1034 2339 1.849823 AGGCCAGGAAGGAGCACTT 60.850 57.895 5.01 0.00 43.65 3.16
1036 2341 1.073897 GCCAGGAAGGAGCACTTGT 59.926 57.895 0.00 0.00 40.21 3.16
1041 2346 1.546476 AGGAAGGAGCACTTGTCTACG 59.454 52.381 0.00 0.00 40.21 3.51
1042 2347 1.404315 GGAAGGAGCACTTGTCTACGG 60.404 57.143 0.00 0.00 40.21 4.02
1043 2348 1.544691 GAAGGAGCACTTGTCTACGGA 59.455 52.381 0.00 0.00 40.21 4.69
1092 2400 0.737367 CTCGGCTGATCACGCTCAAA 60.737 55.000 14.20 1.55 0.00 2.69
1149 2457 0.976641 AGATGACCGACAAGCTCCAA 59.023 50.000 0.00 0.00 0.00 3.53
1158 2466 2.806745 CGACAAGCTCCAAGTCCTCAAA 60.807 50.000 0.00 0.00 0.00 2.69
1224 2532 2.736719 CGTCTTCATGATCAACGGCTCT 60.737 50.000 14.01 0.00 0.00 4.09
1227 2535 0.103026 TCATGATCAACGGCTCTCGG 59.897 55.000 0.00 0.00 44.45 4.63
1346 2654 3.668447 CATGGATGTGGGAGTAGCATAC 58.332 50.000 0.00 0.00 43.47 2.39
1425 2780 7.923344 AGAGTATGTTTGAACCATCTAGATTCG 59.077 37.037 1.33 0.00 0.00 3.34
1437 2792 6.432783 ACCATCTAGATTCGTCTTCCTATCTG 59.567 42.308 1.33 0.00 0.00 2.90
1440 2795 7.499321 TCTAGATTCGTCTTCCTATCTGTTC 57.501 40.000 0.00 0.00 0.00 3.18
1632 3002 5.209659 AGGTTCGTTCACCTTCCTATCTAT 58.790 41.667 0.00 0.00 45.76 1.98
1639 3009 5.786264 TCACCTTCCTATCTATTTCGTCC 57.214 43.478 0.00 0.00 0.00 4.79
1653 3023 5.880054 ATTTCGTCCTATGTTTGAACCAG 57.120 39.130 0.00 0.00 0.00 4.00
1695 3065 8.553459 AGGTCTATGAATCAAAACAAGTACTG 57.447 34.615 0.00 0.00 0.00 2.74
1728 3100 2.223386 CGCTTTCGGTGTTTCCTTTCAA 60.223 45.455 0.00 0.00 0.00 2.69
1730 3102 3.735746 GCTTTCGGTGTTTCCTTTCAATG 59.264 43.478 0.00 0.00 0.00 2.82
1735 3107 5.967088 TCGGTGTTTCCTTTCAATGAAAAA 58.033 33.333 9.85 0.00 32.68 1.94
1736 3108 6.039616 TCGGTGTTTCCTTTCAATGAAAAAG 58.960 36.000 9.85 4.70 32.68 2.27
1888 3261 3.541632 ACACAGAACAAACCTGGTACTG 58.458 45.455 0.00 3.36 36.03 2.74
1939 3313 8.475331 TTTTAAAACCAATACAAAAGCGACAA 57.525 26.923 0.00 0.00 0.00 3.18
1940 3314 7.687005 TTAAAACCAATACAAAAGCGACAAG 57.313 32.000 0.00 0.00 0.00 3.16
1941 3315 5.508200 AAACCAATACAAAAGCGACAAGA 57.492 34.783 0.00 0.00 0.00 3.02
1942 3316 5.508200 AACCAATACAAAAGCGACAAGAA 57.492 34.783 0.00 0.00 0.00 2.52
1943 3317 5.508200 ACCAATACAAAAGCGACAAGAAA 57.492 34.783 0.00 0.00 0.00 2.52
1944 3318 5.897050 ACCAATACAAAAGCGACAAGAAAA 58.103 33.333 0.00 0.00 0.00 2.29
1945 3319 6.334202 ACCAATACAAAAGCGACAAGAAAAA 58.666 32.000 0.00 0.00 0.00 1.94
1946 3320 6.254804 ACCAATACAAAAGCGACAAGAAAAAC 59.745 34.615 0.00 0.00 0.00 2.43
1947 3321 6.254589 CCAATACAAAAGCGACAAGAAAAACA 59.745 34.615 0.00 0.00 0.00 2.83
1948 3322 7.329582 CAATACAAAAGCGACAAGAAAAACAG 58.670 34.615 0.00 0.00 0.00 3.16
1949 3323 5.054390 ACAAAAGCGACAAGAAAAACAGA 57.946 34.783 0.00 0.00 0.00 3.41
1950 3324 4.857037 ACAAAAGCGACAAGAAAAACAGAC 59.143 37.500 0.00 0.00 0.00 3.51
1951 3325 3.319238 AAGCGACAAGAAAAACAGACG 57.681 42.857 0.00 0.00 0.00 4.18
1952 3326 2.546778 AGCGACAAGAAAAACAGACGA 58.453 42.857 0.00 0.00 0.00 4.20
1953 3327 2.933906 AGCGACAAGAAAAACAGACGAA 59.066 40.909 0.00 0.00 0.00 3.85
1954 3328 3.001330 AGCGACAAGAAAAACAGACGAAG 59.999 43.478 0.00 0.00 0.00 3.79
1955 3329 3.000925 GCGACAAGAAAAACAGACGAAGA 59.999 43.478 0.00 0.00 0.00 2.87
1956 3330 4.493545 GCGACAAGAAAAACAGACGAAGAA 60.494 41.667 0.00 0.00 0.00 2.52
1957 3331 4.956184 CGACAAGAAAAACAGACGAAGAAC 59.044 41.667 0.00 0.00 0.00 3.01
1959 3333 4.628333 ACAAGAAAAACAGACGAAGAACGA 59.372 37.500 0.00 0.00 45.77 3.85
1960 3334 5.191059 CAAGAAAAACAGACGAAGAACGAG 58.809 41.667 0.00 0.00 45.77 4.18
1961 3335 3.802685 AGAAAAACAGACGAAGAACGAGG 59.197 43.478 0.00 0.00 45.77 4.63
1962 3336 3.447918 AAAACAGACGAAGAACGAGGA 57.552 42.857 0.00 0.00 45.77 3.71
1963 3337 3.447918 AAACAGACGAAGAACGAGGAA 57.552 42.857 0.00 0.00 45.77 3.36
1964 3338 2.708386 ACAGACGAAGAACGAGGAAG 57.292 50.000 0.00 0.00 45.77 3.46
1965 3339 2.228059 ACAGACGAAGAACGAGGAAGA 58.772 47.619 0.00 0.00 45.77 2.87
1966 3340 2.621998 ACAGACGAAGAACGAGGAAGAA 59.378 45.455 0.00 0.00 45.77 2.52
1967 3341 3.238441 CAGACGAAGAACGAGGAAGAAG 58.762 50.000 0.00 0.00 45.77 2.85
1968 3342 3.058155 CAGACGAAGAACGAGGAAGAAGA 60.058 47.826 0.00 0.00 45.77 2.87
1969 3343 3.568853 AGACGAAGAACGAGGAAGAAGAA 59.431 43.478 0.00 0.00 45.77 2.52
1970 3344 3.903360 ACGAAGAACGAGGAAGAAGAAG 58.097 45.455 0.00 0.00 45.77 2.85
1971 3345 3.568853 ACGAAGAACGAGGAAGAAGAAGA 59.431 43.478 0.00 0.00 45.77 2.87
1972 3346 4.037684 ACGAAGAACGAGGAAGAAGAAGAA 59.962 41.667 0.00 0.00 45.77 2.52
1973 3347 4.383351 CGAAGAACGAGGAAGAAGAAGAAC 59.617 45.833 0.00 0.00 45.77 3.01
1974 3348 5.534407 GAAGAACGAGGAAGAAGAAGAACT 58.466 41.667 0.00 0.00 0.00 3.01
1975 3349 6.568081 CGAAGAACGAGGAAGAAGAAGAACTA 60.568 42.308 0.00 0.00 45.77 2.24
1976 3350 6.262193 AGAACGAGGAAGAAGAAGAACTAG 57.738 41.667 0.00 0.00 0.00 2.57
1977 3351 5.184287 AGAACGAGGAAGAAGAAGAACTAGG 59.816 44.000 0.00 0.00 0.00 3.02
1978 3352 3.764972 ACGAGGAAGAAGAAGAACTAGGG 59.235 47.826 0.00 0.00 0.00 3.53
1979 3353 3.764972 CGAGGAAGAAGAAGAACTAGGGT 59.235 47.826 0.00 0.00 0.00 4.34
1980 3354 4.221041 CGAGGAAGAAGAAGAACTAGGGTT 59.779 45.833 0.00 0.00 38.52 4.11
1981 3355 5.418209 CGAGGAAGAAGAAGAACTAGGGTTA 59.582 44.000 0.00 0.00 35.58 2.85
1982 3356 6.071503 CGAGGAAGAAGAAGAACTAGGGTTAA 60.072 42.308 0.00 0.00 35.58 2.01
1983 3357 7.247456 AGGAAGAAGAAGAACTAGGGTTAAG 57.753 40.000 0.00 0.00 35.58 1.85
1984 3358 6.213802 AGGAAGAAGAAGAACTAGGGTTAAGG 59.786 42.308 0.00 0.00 35.58 2.69
1985 3359 6.212993 GGAAGAAGAAGAACTAGGGTTAAGGA 59.787 42.308 0.00 0.00 35.58 3.36
1986 3360 7.256583 GGAAGAAGAAGAACTAGGGTTAAGGAA 60.257 40.741 0.00 0.00 35.58 3.36
1987 3361 7.628501 AGAAGAAGAACTAGGGTTAAGGAAA 57.371 36.000 0.00 0.00 35.58 3.13
1988 3362 8.042286 AGAAGAAGAACTAGGGTTAAGGAAAA 57.958 34.615 0.00 0.00 35.58 2.29
1989 3363 8.670490 AGAAGAAGAACTAGGGTTAAGGAAAAT 58.330 33.333 0.00 0.00 35.58 1.82
1990 3364 9.955102 GAAGAAGAACTAGGGTTAAGGAAAATA 57.045 33.333 0.00 0.00 35.58 1.40
1991 3365 9.961264 AAGAAGAACTAGGGTTAAGGAAAATAG 57.039 33.333 0.00 0.00 35.58 1.73
1992 3366 9.335211 AGAAGAACTAGGGTTAAGGAAAATAGA 57.665 33.333 0.00 0.00 35.58 1.98
2030 3404 9.850628 AAGTGTTAGATGAATTGATTGATTGTG 57.149 29.630 0.00 0.00 0.00 3.33
2031 3405 9.017509 AGTGTTAGATGAATTGATTGATTGTGT 57.982 29.630 0.00 0.00 0.00 3.72
2032 3406 9.069078 GTGTTAGATGAATTGATTGATTGTGTG 57.931 33.333 0.00 0.00 0.00 3.82
2033 3407 8.795513 TGTTAGATGAATTGATTGATTGTGTGT 58.204 29.630 0.00 0.00 0.00 3.72
2034 3408 9.630098 GTTAGATGAATTGATTGATTGTGTGTT 57.370 29.630 0.00 0.00 0.00 3.32
2037 3411 9.550406 AGATGAATTGATTGATTGTGTGTTTTT 57.450 25.926 0.00 0.00 0.00 1.94
2038 3412 9.801714 GATGAATTGATTGATTGTGTGTTTTTC 57.198 29.630 0.00 0.00 0.00 2.29
2039 3413 8.713737 TGAATTGATTGATTGTGTGTTTTTCA 57.286 26.923 0.00 0.00 0.00 2.69
2040 3414 9.159364 TGAATTGATTGATTGTGTGTTTTTCAA 57.841 25.926 0.00 0.00 0.00 2.69
2044 3418 6.768029 ATTGATTGTGTGTTTTTCAATCGG 57.232 33.333 10.89 0.00 45.69 4.18
2045 3419 4.047822 TGATTGTGTGTTTTTCAATCGGC 58.952 39.130 10.89 0.00 45.69 5.54
2046 3420 2.500509 TGTGTGTTTTTCAATCGGCC 57.499 45.000 0.00 0.00 0.00 6.13
2047 3421 1.268794 TGTGTGTTTTTCAATCGGCCG 60.269 47.619 22.12 22.12 0.00 6.13
2048 3422 1.025812 TGTGTTTTTCAATCGGCCGT 58.974 45.000 27.15 10.00 0.00 5.68
2049 3423 1.002251 TGTGTTTTTCAATCGGCCGTC 60.002 47.619 27.15 6.14 0.00 4.79
2050 3424 0.236187 TGTTTTTCAATCGGCCGTCG 59.764 50.000 27.15 14.81 40.90 5.12
2051 3425 1.063412 GTTTTTCAATCGGCCGTCGC 61.063 55.000 27.15 2.70 39.05 5.19
2061 3435 3.433319 GCCGTCGCCTCTCATCTA 58.567 61.111 0.00 0.00 0.00 1.98
2062 3436 1.734137 GCCGTCGCCTCTCATCTAA 59.266 57.895 0.00 0.00 0.00 2.10
2063 3437 0.315568 GCCGTCGCCTCTCATCTAAT 59.684 55.000 0.00 0.00 0.00 1.73
2064 3438 1.269831 GCCGTCGCCTCTCATCTAATT 60.270 52.381 0.00 0.00 0.00 1.40
2065 3439 2.030185 GCCGTCGCCTCTCATCTAATTA 60.030 50.000 0.00 0.00 0.00 1.40
2066 3440 3.367498 GCCGTCGCCTCTCATCTAATTAT 60.367 47.826 0.00 0.00 0.00 1.28
2067 3441 4.169508 CCGTCGCCTCTCATCTAATTATG 58.830 47.826 0.00 0.00 0.00 1.90
2068 3442 4.082733 CCGTCGCCTCTCATCTAATTATGA 60.083 45.833 0.00 0.00 34.72 2.15
2075 3449 4.199432 CTCATCTAATTATGAGGCGGCT 57.801 45.455 13.09 13.09 46.07 5.52
2076 3450 3.930336 TCATCTAATTATGAGGCGGCTG 58.070 45.455 19.63 0.00 32.18 4.85
2077 3451 2.839486 TCTAATTATGAGGCGGCTGG 57.161 50.000 19.63 0.00 0.00 4.85
2078 3452 2.325484 TCTAATTATGAGGCGGCTGGA 58.675 47.619 19.63 2.20 0.00 3.86
2079 3453 2.037251 TCTAATTATGAGGCGGCTGGAC 59.963 50.000 19.63 1.86 0.00 4.02
2080 3454 0.839946 AATTATGAGGCGGCTGGACT 59.160 50.000 19.63 0.00 35.84 3.85
2081 3455 0.839946 ATTATGAGGCGGCTGGACTT 59.160 50.000 19.63 2.74 29.96 3.01
2082 3456 0.178068 TTATGAGGCGGCTGGACTTC 59.822 55.000 19.63 0.41 29.96 3.01
2083 3457 1.686325 TATGAGGCGGCTGGACTTCC 61.686 60.000 19.63 0.00 29.96 3.46
2084 3458 4.475135 GAGGCGGCTGGACTTCCC 62.475 72.222 19.63 0.00 29.96 3.97
2089 3463 4.329545 GGCTGGACTTCCCGTGCA 62.330 66.667 0.00 0.00 42.04 4.57
2090 3464 2.281484 GCTGGACTTCCCGTGCAA 60.281 61.111 0.00 0.00 43.71 4.08
2091 3465 2.328099 GCTGGACTTCCCGTGCAAG 61.328 63.158 0.00 0.00 43.71 4.01
2092 3466 1.371183 CTGGACTTCCCGTGCAAGA 59.629 57.895 0.00 0.00 43.71 3.02
2093 3467 0.250295 CTGGACTTCCCGTGCAAGAA 60.250 55.000 0.00 0.00 43.71 2.52
2094 3468 0.181587 TGGACTTCCCGTGCAAGAAA 59.818 50.000 0.00 0.00 41.29 2.52
2095 3469 1.314730 GGACTTCCCGTGCAAGAAAA 58.685 50.000 0.00 0.00 33.62 2.29
2096 3470 1.266989 GGACTTCCCGTGCAAGAAAAG 59.733 52.381 0.00 6.80 33.62 2.27
2097 3471 1.266989 GACTTCCCGTGCAAGAAAAGG 59.733 52.381 0.00 0.00 0.00 3.11
2098 3472 1.133915 ACTTCCCGTGCAAGAAAAGGA 60.134 47.619 0.00 0.00 0.00 3.36
2099 3473 1.266989 CTTCCCGTGCAAGAAAAGGAC 59.733 52.381 0.00 0.00 0.00 3.85
2100 3474 0.472471 TCCCGTGCAAGAAAAGGACT 59.528 50.000 0.00 0.00 0.00 3.85
2101 3475 0.875059 CCCGTGCAAGAAAAGGACTC 59.125 55.000 0.00 0.00 0.00 3.36
2102 3476 0.875059 CCGTGCAAGAAAAGGACTCC 59.125 55.000 0.00 0.00 0.00 3.85
2103 3477 1.593196 CGTGCAAGAAAAGGACTCCA 58.407 50.000 0.00 0.00 0.00 3.86
2104 3478 1.946768 CGTGCAAGAAAAGGACTCCAA 59.053 47.619 0.00 0.00 0.00 3.53
2105 3479 2.357637 CGTGCAAGAAAAGGACTCCAAA 59.642 45.455 0.00 0.00 0.00 3.28
2106 3480 3.004734 CGTGCAAGAAAAGGACTCCAAAT 59.995 43.478 0.00 0.00 0.00 2.32
2107 3481 4.550422 GTGCAAGAAAAGGACTCCAAATC 58.450 43.478 0.00 0.00 0.00 2.17
2108 3482 4.037923 GTGCAAGAAAAGGACTCCAAATCA 59.962 41.667 0.00 0.00 0.00 2.57
2109 3483 4.037923 TGCAAGAAAAGGACTCCAAATCAC 59.962 41.667 0.00 0.00 0.00 3.06
2110 3484 4.787598 CAAGAAAAGGACTCCAAATCACG 58.212 43.478 0.00 0.00 0.00 4.35
2111 3485 4.086706 AGAAAAGGACTCCAAATCACGT 57.913 40.909 0.00 0.00 0.00 4.49
2112 3486 4.065789 AGAAAAGGACTCCAAATCACGTC 58.934 43.478 0.00 0.00 0.00 4.34
2113 3487 2.474410 AAGGACTCCAAATCACGTCC 57.526 50.000 0.00 0.00 44.84 4.79
2114 3488 1.348064 AGGACTCCAAATCACGTCCA 58.652 50.000 9.65 0.00 46.45 4.02
2115 3489 1.697432 AGGACTCCAAATCACGTCCAA 59.303 47.619 9.65 0.00 46.45 3.53
2116 3490 2.105821 AGGACTCCAAATCACGTCCAAA 59.894 45.455 9.65 0.00 46.45 3.28
2117 3491 3.081804 GGACTCCAAATCACGTCCAAAT 58.918 45.455 0.00 0.00 44.11 2.32
2118 3492 3.127030 GGACTCCAAATCACGTCCAAATC 59.873 47.826 0.00 0.00 44.11 2.17
2119 3493 4.003648 GACTCCAAATCACGTCCAAATCT 58.996 43.478 0.00 0.00 0.00 2.40
2120 3494 4.398319 ACTCCAAATCACGTCCAAATCTT 58.602 39.130 0.00 0.00 0.00 2.40
2121 3495 4.827284 ACTCCAAATCACGTCCAAATCTTT 59.173 37.500 0.00 0.00 0.00 2.52
2122 3496 5.301805 ACTCCAAATCACGTCCAAATCTTTT 59.698 36.000 0.00 0.00 0.00 2.27
2123 3497 5.768317 TCCAAATCACGTCCAAATCTTTTC 58.232 37.500 0.00 0.00 0.00 2.29
2124 3498 5.300539 TCCAAATCACGTCCAAATCTTTTCA 59.699 36.000 0.00 0.00 0.00 2.69
2125 3499 5.982516 CCAAATCACGTCCAAATCTTTTCAA 59.017 36.000 0.00 0.00 0.00 2.69
2126 3500 6.478344 CCAAATCACGTCCAAATCTTTTCAAA 59.522 34.615 0.00 0.00 0.00 2.69
2127 3501 7.010923 CCAAATCACGTCCAAATCTTTTCAAAA 59.989 33.333 0.00 0.00 0.00 2.44
2128 3502 8.550376 CAAATCACGTCCAAATCTTTTCAAAAT 58.450 29.630 0.00 0.00 0.00 1.82
2129 3503 8.661352 AATCACGTCCAAATCTTTTCAAAATT 57.339 26.923 0.00 0.00 0.00 1.82
2130 3504 9.757227 AATCACGTCCAAATCTTTTCAAAATTA 57.243 25.926 0.00 0.00 0.00 1.40
2131 3505 9.757227 ATCACGTCCAAATCTTTTCAAAATTAA 57.243 25.926 0.00 0.00 0.00 1.40
2132 3506 9.026074 TCACGTCCAAATCTTTTCAAAATTAAC 57.974 29.630 0.00 0.00 0.00 2.01
2133 3507 8.272866 CACGTCCAAATCTTTTCAAAATTAACC 58.727 33.333 0.00 0.00 0.00 2.85
2134 3508 7.168469 ACGTCCAAATCTTTTCAAAATTAACCG 59.832 33.333 0.00 0.00 0.00 4.44
2135 3509 7.380065 CGTCCAAATCTTTTCAAAATTAACCGA 59.620 33.333 0.00 0.00 0.00 4.69
2136 3510 9.036671 GTCCAAATCTTTTCAAAATTAACCGAA 57.963 29.630 0.00 0.00 0.00 4.30
2137 3511 9.036671 TCCAAATCTTTTCAAAATTAACCGAAC 57.963 29.630 0.00 0.00 0.00 3.95
2138 3512 9.040939 CCAAATCTTTTCAAAATTAACCGAACT 57.959 29.630 0.00 0.00 0.00 3.01
2140 3514 8.502161 AATCTTTTCAAAATTAACCGAACTCG 57.498 30.769 0.00 0.00 39.44 4.18
2153 3527 2.618053 CGAACTCGGATTTAGGCAAGT 58.382 47.619 0.00 0.00 35.37 3.16
2154 3528 2.603560 CGAACTCGGATTTAGGCAAGTC 59.396 50.000 0.00 0.00 35.37 3.01
2155 3529 3.676324 CGAACTCGGATTTAGGCAAGTCT 60.676 47.826 0.00 0.00 35.37 3.24
2156 3530 3.252974 ACTCGGATTTAGGCAAGTCTG 57.747 47.619 0.00 0.00 0.00 3.51
2157 3531 2.093447 ACTCGGATTTAGGCAAGTCTGG 60.093 50.000 0.00 0.00 29.90 3.86
2158 3532 1.209504 TCGGATTTAGGCAAGTCTGGG 59.790 52.381 0.00 0.00 29.90 4.45
2159 3533 1.209504 CGGATTTAGGCAAGTCTGGGA 59.790 52.381 0.00 0.00 0.00 4.37
2160 3534 2.644676 GGATTTAGGCAAGTCTGGGAC 58.355 52.381 0.00 0.00 0.00 4.46
2161 3535 2.026262 GGATTTAGGCAAGTCTGGGACA 60.026 50.000 0.52 0.00 34.60 4.02
2162 3536 3.561313 GGATTTAGGCAAGTCTGGGACAA 60.561 47.826 0.52 0.00 38.70 3.18
2163 3537 2.561478 TTAGGCAAGTCTGGGACAAC 57.439 50.000 0.52 0.00 38.70 3.32
2164 3538 1.429930 TAGGCAAGTCTGGGACAACA 58.570 50.000 0.52 0.00 38.70 3.33
2165 3539 0.109342 AGGCAAGTCTGGGACAACAG 59.891 55.000 0.52 0.00 38.70 3.16
2166 3540 0.179018 GGCAAGTCTGGGACAACAGT 60.179 55.000 0.52 0.00 38.70 3.55
2167 3541 1.680338 GCAAGTCTGGGACAACAGTT 58.320 50.000 0.52 0.00 38.70 3.16
2168 3542 1.604278 GCAAGTCTGGGACAACAGTTC 59.396 52.381 0.52 0.00 38.70 3.01
2169 3543 2.917933 CAAGTCTGGGACAACAGTTCA 58.082 47.619 0.52 0.00 38.70 3.18
2170 3544 2.874701 CAAGTCTGGGACAACAGTTCAG 59.125 50.000 0.52 0.00 38.70 3.02
2171 3545 2.119495 AGTCTGGGACAACAGTTCAGT 58.881 47.619 0.52 0.00 38.70 3.41
2172 3546 2.505819 AGTCTGGGACAACAGTTCAGTT 59.494 45.455 0.52 0.00 38.70 3.16
2173 3547 3.054361 AGTCTGGGACAACAGTTCAGTTT 60.054 43.478 0.52 0.00 38.70 2.66
2174 3548 3.694566 GTCTGGGACAACAGTTCAGTTTT 59.305 43.478 0.00 0.00 38.70 2.43
2175 3549 4.157840 GTCTGGGACAACAGTTCAGTTTTT 59.842 41.667 0.00 0.00 38.70 1.94
2176 3550 5.355910 GTCTGGGACAACAGTTCAGTTTTTA 59.644 40.000 0.00 0.00 38.70 1.52
2177 3551 5.588648 TCTGGGACAACAGTTCAGTTTTTAG 59.411 40.000 0.00 0.00 38.70 1.85
2178 3552 4.642885 TGGGACAACAGTTCAGTTTTTAGG 59.357 41.667 0.00 0.00 31.92 2.69
2179 3553 4.643334 GGGACAACAGTTCAGTTTTTAGGT 59.357 41.667 0.00 0.00 0.00 3.08
2180 3554 5.220989 GGGACAACAGTTCAGTTTTTAGGTC 60.221 44.000 0.00 0.00 0.00 3.85
2181 3555 5.220989 GGACAACAGTTCAGTTTTTAGGTCC 60.221 44.000 0.00 0.00 34.52 4.46
2182 3556 4.334481 ACAACAGTTCAGTTTTTAGGTCCG 59.666 41.667 0.00 0.00 0.00 4.79
2183 3557 4.411256 ACAGTTCAGTTTTTAGGTCCGA 57.589 40.909 0.00 0.00 0.00 4.55
2184 3558 4.124970 ACAGTTCAGTTTTTAGGTCCGAC 58.875 43.478 0.00 0.00 0.00 4.79
2185 3559 4.124238 CAGTTCAGTTTTTAGGTCCGACA 58.876 43.478 0.00 0.00 0.00 4.35
2186 3560 4.211374 CAGTTCAGTTTTTAGGTCCGACAG 59.789 45.833 0.00 0.00 0.00 3.51
2187 3561 3.396260 TCAGTTTTTAGGTCCGACAGG 57.604 47.619 0.00 0.00 39.46 4.00
2188 3562 1.804748 CAGTTTTTAGGTCCGACAGGC 59.195 52.381 0.00 0.00 37.47 4.85
2189 3563 1.162698 GTTTTTAGGTCCGACAGGCC 58.837 55.000 0.00 0.00 37.47 5.19
2190 3564 0.766131 TTTTTAGGTCCGACAGGCCA 59.234 50.000 5.01 0.00 36.54 5.36
2191 3565 0.988832 TTTTAGGTCCGACAGGCCAT 59.011 50.000 5.01 0.00 36.54 4.40
2192 3566 1.868713 TTTAGGTCCGACAGGCCATA 58.131 50.000 5.01 0.00 36.54 2.74
2193 3567 1.868713 TTAGGTCCGACAGGCCATAA 58.131 50.000 5.01 0.00 36.54 1.90
2194 3568 1.868713 TAGGTCCGACAGGCCATAAA 58.131 50.000 5.01 0.00 36.54 1.40
2195 3569 0.252197 AGGTCCGACAGGCCATAAAC 59.748 55.000 5.01 0.00 36.54 2.01
2196 3570 1.087771 GGTCCGACAGGCCATAAACG 61.088 60.000 5.01 3.04 37.47 3.60
2197 3571 0.108520 GTCCGACAGGCCATAAACGA 60.109 55.000 5.01 0.00 37.47 3.85
2198 3572 0.174845 TCCGACAGGCCATAAACGAG 59.825 55.000 5.01 0.00 37.47 4.18
2199 3573 1.429148 CCGACAGGCCATAAACGAGC 61.429 60.000 5.01 0.00 0.00 5.03
2200 3574 0.460284 CGACAGGCCATAAACGAGCT 60.460 55.000 5.01 0.00 0.00 4.09
2201 3575 1.291132 GACAGGCCATAAACGAGCTC 58.709 55.000 5.01 2.73 0.00 4.09
2202 3576 0.460284 ACAGGCCATAAACGAGCTCG 60.460 55.000 33.45 33.45 46.33 5.03
2203 3577 1.144057 AGGCCATAAACGAGCTCGG 59.856 57.895 36.93 20.50 44.95 4.63
2204 3578 1.143183 GGCCATAAACGAGCTCGGA 59.857 57.895 36.93 23.14 44.95 4.55
2205 3579 0.249911 GGCCATAAACGAGCTCGGAT 60.250 55.000 36.93 26.93 44.95 4.18
2206 3580 0.861837 GCCATAAACGAGCTCGGATG 59.138 55.000 36.93 31.41 44.95 3.51
2207 3581 1.538204 GCCATAAACGAGCTCGGATGA 60.538 52.381 36.93 20.69 44.95 2.92
2208 3582 2.821546 CCATAAACGAGCTCGGATGAA 58.178 47.619 36.93 19.08 44.95 2.57
2209 3583 2.797156 CCATAAACGAGCTCGGATGAAG 59.203 50.000 36.93 21.78 44.95 3.02
2210 3584 3.490933 CCATAAACGAGCTCGGATGAAGA 60.491 47.826 36.93 16.59 44.95 2.87
2211 3585 2.969628 AAACGAGCTCGGATGAAGAT 57.030 45.000 36.93 13.33 44.95 2.40
2212 3586 2.215907 AACGAGCTCGGATGAAGATG 57.784 50.000 36.93 8.66 44.95 2.90
2213 3587 1.393603 ACGAGCTCGGATGAAGATGA 58.606 50.000 36.93 0.00 44.95 2.92
2214 3588 1.336440 ACGAGCTCGGATGAAGATGAG 59.664 52.381 36.93 7.92 44.95 2.90
2216 3590 2.911594 GCTCGGATGAAGATGAGCC 58.088 57.895 1.75 0.00 46.21 4.70
2217 3591 0.602372 GCTCGGATGAAGATGAGCCC 60.602 60.000 1.75 0.00 46.21 5.19
2218 3592 0.755079 CTCGGATGAAGATGAGCCCA 59.245 55.000 0.00 0.00 0.00 5.36
2219 3593 1.139654 CTCGGATGAAGATGAGCCCAA 59.860 52.381 0.00 0.00 0.00 4.12
2220 3594 1.559219 TCGGATGAAGATGAGCCCAAA 59.441 47.619 0.00 0.00 0.00 3.28
2221 3595 2.026356 TCGGATGAAGATGAGCCCAAAA 60.026 45.455 0.00 0.00 0.00 2.44
2222 3596 2.357009 CGGATGAAGATGAGCCCAAAAG 59.643 50.000 0.00 0.00 0.00 2.27
2223 3597 2.100418 GGATGAAGATGAGCCCAAAAGC 59.900 50.000 0.00 0.00 0.00 3.51
2224 3598 2.291209 TGAAGATGAGCCCAAAAGCA 57.709 45.000 0.00 0.00 34.23 3.91
2225 3599 2.596346 TGAAGATGAGCCCAAAAGCAA 58.404 42.857 0.00 0.00 34.23 3.91
2226 3600 2.964464 TGAAGATGAGCCCAAAAGCAAA 59.036 40.909 0.00 0.00 34.23 3.68
2227 3601 3.579586 TGAAGATGAGCCCAAAAGCAAAT 59.420 39.130 0.00 0.00 34.23 2.32
2228 3602 4.040706 TGAAGATGAGCCCAAAAGCAAATT 59.959 37.500 0.00 0.00 34.23 1.82
2229 3603 4.628963 AGATGAGCCCAAAAGCAAATTT 57.371 36.364 0.00 0.00 34.23 1.82
2230 3604 4.320870 AGATGAGCCCAAAAGCAAATTTG 58.679 39.130 14.03 14.03 39.47 2.32
2231 3605 3.834489 TGAGCCCAAAAGCAAATTTGA 57.166 38.095 22.31 0.00 41.73 2.69
2232 3606 3.465871 TGAGCCCAAAAGCAAATTTGAC 58.534 40.909 22.31 12.64 41.73 3.18
2233 3607 2.807967 GAGCCCAAAAGCAAATTTGACC 59.192 45.455 22.31 5.05 41.73 4.02
2234 3608 1.530720 GCCCAAAAGCAAATTTGACCG 59.469 47.619 22.31 4.70 41.73 4.79
2235 3609 2.832563 CCCAAAAGCAAATTTGACCGT 58.167 42.857 22.31 0.45 41.73 4.83
2236 3610 3.202097 CCCAAAAGCAAATTTGACCGTT 58.798 40.909 22.31 6.75 41.73 4.44
2237 3611 3.625313 CCCAAAAGCAAATTTGACCGTTT 59.375 39.130 22.31 12.03 41.73 3.60
2238 3612 4.095632 CCCAAAAGCAAATTTGACCGTTTT 59.904 37.500 22.31 15.85 41.73 2.43
2239 3613 5.027099 CCAAAAGCAAATTTGACCGTTTTG 58.973 37.500 22.31 23.53 41.73 2.44
2240 3614 5.163814 CCAAAAGCAAATTTGACCGTTTTGA 60.164 36.000 28.09 0.00 41.73 2.69
2241 3615 5.463499 AAAGCAAATTTGACCGTTTTGAC 57.537 34.783 22.31 0.00 33.24 3.18
2242 3616 3.112580 AGCAAATTTGACCGTTTTGACG 58.887 40.909 22.31 0.00 33.24 4.35
2243 3617 3.109619 GCAAATTTGACCGTTTTGACGA 58.890 40.909 22.31 0.00 33.24 4.20
2244 3618 3.179599 GCAAATTTGACCGTTTTGACGAG 59.820 43.478 22.31 0.00 33.24 4.18
2245 3619 4.593157 CAAATTTGACCGTTTTGACGAGA 58.407 39.130 13.08 0.00 33.24 4.04
2246 3620 5.212194 CAAATTTGACCGTTTTGACGAGAT 58.788 37.500 13.08 0.00 33.24 2.75
2247 3621 3.870723 TTTGACCGTTTTGACGAGATG 57.129 42.857 0.00 0.00 34.64 2.90
2248 3622 2.804697 TGACCGTTTTGACGAGATGA 57.195 45.000 0.00 0.00 34.64 2.92
2249 3623 3.100658 TGACCGTTTTGACGAGATGAA 57.899 42.857 0.00 0.00 34.64 2.57
2250 3624 2.798283 TGACCGTTTTGACGAGATGAAC 59.202 45.455 0.00 0.00 34.64 3.18
2251 3625 2.798283 GACCGTTTTGACGAGATGAACA 59.202 45.455 0.00 0.00 34.64 3.18
2252 3626 3.199677 ACCGTTTTGACGAGATGAACAA 58.800 40.909 0.00 0.00 34.64 2.83
2253 3627 3.001939 ACCGTTTTGACGAGATGAACAAC 59.998 43.478 0.00 0.00 34.64 3.32
2254 3628 3.247648 CCGTTTTGACGAGATGAACAACT 59.752 43.478 0.00 0.00 34.64 3.16
2255 3629 4.260620 CCGTTTTGACGAGATGAACAACTT 60.261 41.667 0.00 0.00 34.64 2.66
2256 3630 5.263185 CGTTTTGACGAGATGAACAACTTT 58.737 37.500 0.00 0.00 34.64 2.66
2257 3631 5.392585 CGTTTTGACGAGATGAACAACTTTC 59.607 40.000 0.00 0.00 34.64 2.62
2258 3632 6.255215 GTTTTGACGAGATGAACAACTTTCA 58.745 36.000 0.00 0.00 0.00 2.69
2259 3633 6.618287 TTTGACGAGATGAACAACTTTCAT 57.382 33.333 0.00 0.00 41.43 2.57
2260 3634 5.596268 TGACGAGATGAACAACTTTCATG 57.404 39.130 4.25 0.00 39.08 3.07
2261 3635 5.056480 TGACGAGATGAACAACTTTCATGT 58.944 37.500 4.25 0.43 39.08 3.21
2262 3636 5.527214 TGACGAGATGAACAACTTTCATGTT 59.473 36.000 4.25 0.00 43.37 2.71
2269 3643 5.704888 TGAACAACTTTCATGTTGAACGTT 58.295 33.333 0.00 0.00 45.68 3.99
2270 3644 6.153067 TGAACAACTTTCATGTTGAACGTTT 58.847 32.000 13.31 0.00 43.39 3.60
2271 3645 6.642950 TGAACAACTTTCATGTTGAACGTTTT 59.357 30.769 13.31 7.56 43.39 2.43
2272 3646 7.169982 TGAACAACTTTCATGTTGAACGTTTTT 59.830 29.630 13.31 9.11 43.39 1.94
2293 3667 4.750021 TTCATCAGAGACCATCTTGAGG 57.250 45.455 0.00 0.00 35.47 3.86
2294 3668 3.036819 TCATCAGAGACCATCTTGAGGG 58.963 50.000 0.00 0.00 35.47 4.30
2295 3669 1.871418 TCAGAGACCATCTTGAGGGG 58.129 55.000 6.28 0.00 35.47 4.79
2296 3670 0.835941 CAGAGACCATCTTGAGGGGG 59.164 60.000 6.28 0.00 35.47 5.40
2313 3687 2.598565 GGGGGTTTCTGCTCTTTTTCT 58.401 47.619 0.00 0.00 0.00 2.52
2314 3688 2.297315 GGGGGTTTCTGCTCTTTTTCTG 59.703 50.000 0.00 0.00 0.00 3.02
2315 3689 3.222603 GGGGTTTCTGCTCTTTTTCTGA 58.777 45.455 0.00 0.00 0.00 3.27
2316 3690 3.636764 GGGGTTTCTGCTCTTTTTCTGAA 59.363 43.478 0.00 0.00 0.00 3.02
2317 3691 4.261783 GGGGTTTCTGCTCTTTTTCTGAAG 60.262 45.833 0.00 0.00 0.00 3.02
2318 3692 4.339530 GGGTTTCTGCTCTTTTTCTGAAGT 59.660 41.667 0.00 0.00 0.00 3.01
2319 3693 5.506483 GGGTTTCTGCTCTTTTTCTGAAGTC 60.506 44.000 0.00 0.00 0.00 3.01
2320 3694 5.298026 GGTTTCTGCTCTTTTTCTGAAGTCT 59.702 40.000 0.00 0.00 0.00 3.24
2321 3695 5.998454 TTCTGCTCTTTTTCTGAAGTCTG 57.002 39.130 0.00 0.00 0.00 3.51
2322 3696 4.384056 TCTGCTCTTTTTCTGAAGTCTGG 58.616 43.478 0.00 0.00 0.00 3.86
2323 3697 3.480470 TGCTCTTTTTCTGAAGTCTGGG 58.520 45.455 0.00 0.00 0.00 4.45
2324 3698 2.816672 GCTCTTTTTCTGAAGTCTGGGG 59.183 50.000 0.00 0.00 0.00 4.96
2325 3699 2.816672 CTCTTTTTCTGAAGTCTGGGGC 59.183 50.000 0.00 0.00 0.00 5.80
2326 3700 2.174639 TCTTTTTCTGAAGTCTGGGGCA 59.825 45.455 0.00 0.00 0.00 5.36
2327 3701 2.276732 TTTTCTGAAGTCTGGGGCAG 57.723 50.000 0.00 0.00 0.00 4.85
2328 3702 1.434188 TTTCTGAAGTCTGGGGCAGA 58.566 50.000 0.00 0.00 38.25 4.26
2329 3703 1.434188 TTCTGAAGTCTGGGGCAGAA 58.566 50.000 0.00 0.00 42.46 3.02
2330 3704 1.434188 TCTGAAGTCTGGGGCAGAAA 58.566 50.000 0.00 0.00 42.46 2.52
2331 3705 1.774254 TCTGAAGTCTGGGGCAGAAAA 59.226 47.619 0.00 0.00 42.46 2.29
2332 3706 2.174639 TCTGAAGTCTGGGGCAGAAAAA 59.825 45.455 0.00 0.00 42.46 1.94
2333 3707 3.160269 CTGAAGTCTGGGGCAGAAAAAT 58.840 45.455 0.00 0.00 42.46 1.82
2334 3708 3.157087 TGAAGTCTGGGGCAGAAAAATC 58.843 45.455 0.00 0.00 42.46 2.17
2335 3709 2.222227 AGTCTGGGGCAGAAAAATCC 57.778 50.000 0.00 0.00 42.46 3.01
2336 3710 1.428912 AGTCTGGGGCAGAAAAATCCA 59.571 47.619 0.00 0.00 42.46 3.41
2337 3711 2.158325 AGTCTGGGGCAGAAAAATCCAA 60.158 45.455 0.00 0.00 42.46 3.53
2338 3712 2.632512 GTCTGGGGCAGAAAAATCCAAA 59.367 45.455 0.00 0.00 42.46 3.28
2339 3713 3.070878 GTCTGGGGCAGAAAAATCCAAAA 59.929 43.478 0.00 0.00 42.46 2.44
2340 3714 3.070878 TCTGGGGCAGAAAAATCCAAAAC 59.929 43.478 0.00 0.00 37.57 2.43
2341 3715 2.105649 TGGGGCAGAAAAATCCAAAACC 59.894 45.455 0.00 0.00 0.00 3.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
227 228 1.269998 CACTCGTCGTCCTTCTCCTTT 59.730 52.381 0.00 0.00 0.00 3.11
277 278 1.116436 GCTGACGAGATCGATGAACG 58.884 55.000 0.54 8.25 43.02 3.95
354 355 0.959372 AGGCCGAGGTCGATATACCG 60.959 60.000 0.00 0.00 44.77 4.02
389 392 3.451677 ACTACTACTAGAGGGAGGGGA 57.548 52.381 0.00 0.00 0.00 4.81
443 450 6.426025 ACATGATCATTCATAGTTGGTCATCG 59.574 38.462 5.16 0.00 40.77 3.84
449 456 9.716531 ACATACTACATGATCATTCATAGTTGG 57.283 33.333 20.94 16.93 40.70 3.77
537 547 1.922880 GCGGCAAAACAGAAACCGTAC 60.923 52.381 0.00 0.00 45.53 3.67
551 563 2.951745 CAAAAACGTGCGCGGCAA 60.952 55.556 25.20 0.00 41.47 4.52
571 583 1.455786 CGACAAAGATCTCGTTTGCGT 59.544 47.619 0.00 0.00 38.27 5.24
604 616 3.623960 CGTAAAATCCCGACCTGCATAAA 59.376 43.478 0.00 0.00 0.00 1.40
683 696 2.222819 GGATTTTCTACAGCGCGTTCTG 60.223 50.000 8.43 10.30 39.86 3.02
737 753 1.454653 GACTACAGAAACACGGCGTTC 59.545 52.381 11.19 5.83 36.59 3.95
751 781 3.170717 CTTCCCAAGGGTACAGACTACA 58.829 50.000 4.80 0.00 36.47 2.74
752 782 3.438183 TCTTCCCAAGGGTACAGACTAC 58.562 50.000 4.80 0.00 36.47 2.73
753 783 3.709587 CTCTTCCCAAGGGTACAGACTA 58.290 50.000 4.80 0.00 36.47 2.59
754 784 2.541466 CTCTTCCCAAGGGTACAGACT 58.459 52.381 4.80 0.00 36.47 3.24
755 785 1.066071 GCTCTTCCCAAGGGTACAGAC 60.066 57.143 4.80 0.00 36.47 3.51
756 786 1.276622 GCTCTTCCCAAGGGTACAGA 58.723 55.000 4.80 4.89 36.47 3.41
757 787 0.984230 TGCTCTTCCCAAGGGTACAG 59.016 55.000 4.80 0.60 36.47 2.74
758 788 1.440618 TTGCTCTTCCCAAGGGTACA 58.559 50.000 4.80 0.00 36.47 2.90
882 2173 3.950395 GAGTGGTTAGTGGTAGTACGGAT 59.050 47.826 0.00 0.00 0.00 4.18
927 2218 2.108970 GACGGGGAAGTGATAGAAGGT 58.891 52.381 0.00 0.00 0.00 3.50
951 2243 5.310409 TCTGGAATCTGGAGTTCTTGTTT 57.690 39.130 0.00 0.00 0.00 2.83
993 2298 3.076916 GCCCCTGCCATGGTTTCC 61.077 66.667 14.67 0.00 0.00 3.13
1020 2325 2.672478 CGTAGACAAGTGCTCCTTCCTG 60.672 54.545 0.00 0.00 0.00 3.86
1034 2339 0.034380 CACCTCCTCCTCCGTAGACA 60.034 60.000 0.00 0.00 0.00 3.41
1036 2341 0.917821 TCCACCTCCTCCTCCGTAGA 60.918 60.000 0.00 0.00 0.00 2.59
1041 2346 4.366159 GAGTCCACCTCCTCCTCC 57.634 66.667 0.00 0.00 33.79 4.30
1092 2400 3.699894 CGCTCCTGGCTCACCACT 61.700 66.667 0.00 0.00 42.67 4.00
1149 2457 1.120530 ACCACACGTCTTTGAGGACT 58.879 50.000 0.00 0.00 34.38 3.85
1227 2535 3.119096 GTGCTCTCGGGGCGAAAC 61.119 66.667 0.00 0.00 34.74 2.78
1346 2654 4.790651 CGATACTTATCTAGATGCGCACAG 59.209 45.833 14.90 11.00 0.00 3.66
1348 2656 4.971008 TCGATACTTATCTAGATGCGCAC 58.029 43.478 14.90 7.11 0.00 5.34
1349 2657 5.819825 ATCGATACTTATCTAGATGCGCA 57.180 39.130 14.96 14.96 0.00 6.09
1350 2658 7.858382 ACAATATCGATACTTATCTAGATGCGC 59.142 37.037 15.79 0.00 0.00 6.09
1351 2659 9.376171 GACAATATCGATACTTATCTAGATGCG 57.624 37.037 15.79 8.33 0.00 4.73
1425 2780 2.422832 ACGACGGAACAGATAGGAAGAC 59.577 50.000 0.00 0.00 0.00 3.01
1437 2792 2.801679 TGGTTCAAACATACGACGGAAC 59.198 45.455 0.00 1.13 35.20 3.62
1440 2795 4.569162 ACATATGGTTCAAACATACGACGG 59.431 41.667 7.80 0.00 33.98 4.79
1517 2882 9.500785 TCCTTTTTGAATGAAAGAAACAAAACT 57.499 25.926 0.00 0.00 39.17 2.66
1632 3002 4.069304 CCTGGTTCAAACATAGGACGAAA 58.931 43.478 8.83 0.00 37.12 3.46
1653 3023 8.816894 TCATAGACCTCAACATAAAGGATATCC 58.183 37.037 14.41 14.41 36.46 2.59
1695 3065 4.088648 CACCGAAAGCGAAAATGTGATAC 58.911 43.478 0.00 0.00 40.82 2.24
1728 3100 5.458595 ACTCCTTTTCCACTCCTTTTTCAT 58.541 37.500 0.00 0.00 0.00 2.57
1730 3102 6.943146 AGATACTCCTTTTCCACTCCTTTTTC 59.057 38.462 0.00 0.00 0.00 2.29
1735 3107 4.034410 GGAGATACTCCTTTTCCACTCCT 58.966 47.826 10.16 0.00 46.41 3.69
1736 3108 4.409718 GGAGATACTCCTTTTCCACTCC 57.590 50.000 10.16 0.00 46.41 3.85
1763 3135 1.718757 CTGCAATTAGAGCACCCCGC 61.719 60.000 0.00 0.00 37.02 6.13
1805 3178 7.551035 ACAATAGCAGCAATCAAAACAAAAA 57.449 28.000 0.00 0.00 0.00 1.94
1827 3200 9.368674 CCATGACATGCAAAAGAAAATAATACA 57.631 29.630 10.10 0.00 0.00 2.29
1846 3219 8.684386 TGTGTTTTAGAAAATCTACCATGACA 57.316 30.769 0.00 0.00 0.00 3.58
1888 3261 9.986833 AAAATAAACATGTCTTGCAAAAAGAAC 57.013 25.926 0.00 0.00 0.00 3.01
1921 3295 5.508200 TTTCTTGTCGCTTTTGTATTGGT 57.492 34.783 0.00 0.00 0.00 3.67
1922 3296 6.254589 TGTTTTTCTTGTCGCTTTTGTATTGG 59.745 34.615 0.00 0.00 0.00 3.16
1930 3304 3.372822 TCGTCTGTTTTTCTTGTCGCTTT 59.627 39.130 0.00 0.00 0.00 3.51
1935 3309 4.956184 CGTTCTTCGTCTGTTTTTCTTGTC 59.044 41.667 0.00 0.00 34.52 3.18
1939 3313 3.802685 CCTCGTTCTTCGTCTGTTTTTCT 59.197 43.478 0.00 0.00 40.80 2.52
1940 3314 3.800506 TCCTCGTTCTTCGTCTGTTTTTC 59.199 43.478 0.00 0.00 40.80 2.29
1941 3315 3.788937 TCCTCGTTCTTCGTCTGTTTTT 58.211 40.909 0.00 0.00 40.80 1.94
1942 3316 3.447918 TCCTCGTTCTTCGTCTGTTTT 57.552 42.857 0.00 0.00 40.80 2.43
1943 3317 3.067742 TCTTCCTCGTTCTTCGTCTGTTT 59.932 43.478 0.00 0.00 40.80 2.83
1944 3318 2.621998 TCTTCCTCGTTCTTCGTCTGTT 59.378 45.455 0.00 0.00 40.80 3.16
1945 3319 2.228059 TCTTCCTCGTTCTTCGTCTGT 58.772 47.619 0.00 0.00 40.80 3.41
1946 3320 2.991434 TCTTCCTCGTTCTTCGTCTG 57.009 50.000 0.00 0.00 40.80 3.51
1947 3321 3.147629 TCTTCTTCCTCGTTCTTCGTCT 58.852 45.455 0.00 0.00 40.80 4.18
1948 3322 3.555917 TCTTCTTCCTCGTTCTTCGTC 57.444 47.619 0.00 0.00 40.80 4.20
1949 3323 3.568853 TCTTCTTCTTCCTCGTTCTTCGT 59.431 43.478 0.00 0.00 40.80 3.85
1950 3324 4.162096 TCTTCTTCTTCCTCGTTCTTCG 57.838 45.455 0.00 0.00 41.41 3.79
1951 3325 5.534407 AGTTCTTCTTCTTCCTCGTTCTTC 58.466 41.667 0.00 0.00 0.00 2.87
1952 3326 5.538849 AGTTCTTCTTCTTCCTCGTTCTT 57.461 39.130 0.00 0.00 0.00 2.52
1953 3327 5.184287 CCTAGTTCTTCTTCTTCCTCGTTCT 59.816 44.000 0.00 0.00 0.00 3.01
1954 3328 5.404096 CCTAGTTCTTCTTCTTCCTCGTTC 58.596 45.833 0.00 0.00 0.00 3.95
1955 3329 4.221041 CCCTAGTTCTTCTTCTTCCTCGTT 59.779 45.833 0.00 0.00 0.00 3.85
1956 3330 3.764972 CCCTAGTTCTTCTTCTTCCTCGT 59.235 47.826 0.00 0.00 0.00 4.18
1957 3331 3.764972 ACCCTAGTTCTTCTTCTTCCTCG 59.235 47.826 0.00 0.00 0.00 4.63
1958 3332 5.748670 AACCCTAGTTCTTCTTCTTCCTC 57.251 43.478 0.00 0.00 0.00 3.71
1959 3333 6.213802 CCTTAACCCTAGTTCTTCTTCTTCCT 59.786 42.308 0.00 0.00 37.42 3.36
1960 3334 6.212993 TCCTTAACCCTAGTTCTTCTTCTTCC 59.787 42.308 0.00 0.00 37.42 3.46
1961 3335 7.242322 TCCTTAACCCTAGTTCTTCTTCTTC 57.758 40.000 0.00 0.00 37.42 2.87
1962 3336 7.628501 TTCCTTAACCCTAGTTCTTCTTCTT 57.371 36.000 0.00 0.00 37.42 2.52
1963 3337 7.628501 TTTCCTTAACCCTAGTTCTTCTTCT 57.371 36.000 0.00 0.00 37.42 2.85
1964 3338 8.865420 ATTTTCCTTAACCCTAGTTCTTCTTC 57.135 34.615 0.00 0.00 37.42 2.87
1965 3339 9.961264 CTATTTTCCTTAACCCTAGTTCTTCTT 57.039 33.333 0.00 0.00 37.42 2.52
1966 3340 9.335211 TCTATTTTCCTTAACCCTAGTTCTTCT 57.665 33.333 0.00 0.00 37.42 2.85
2004 3378 9.850628 CACAATCAATCAATTCATCTAACACTT 57.149 29.630 0.00 0.00 0.00 3.16
2005 3379 9.017509 ACACAATCAATCAATTCATCTAACACT 57.982 29.630 0.00 0.00 0.00 3.55
2006 3380 9.069078 CACACAATCAATCAATTCATCTAACAC 57.931 33.333 0.00 0.00 0.00 3.32
2007 3381 8.795513 ACACACAATCAATCAATTCATCTAACA 58.204 29.630 0.00 0.00 0.00 2.41
2008 3382 9.630098 AACACACAATCAATCAATTCATCTAAC 57.370 29.630 0.00 0.00 0.00 2.34
2011 3385 9.550406 AAAAACACACAATCAATCAATTCATCT 57.450 25.926 0.00 0.00 0.00 2.90
2012 3386 9.801714 GAAAAACACACAATCAATCAATTCATC 57.198 29.630 0.00 0.00 0.00 2.92
2013 3387 9.327628 TGAAAAACACACAATCAATCAATTCAT 57.672 25.926 0.00 0.00 0.00 2.57
2014 3388 8.713737 TGAAAAACACACAATCAATCAATTCA 57.286 26.923 0.00 0.00 0.00 2.57
2020 3394 6.616260 GCCGATTGAAAAACACACAATCAATC 60.616 38.462 13.90 13.90 46.49 2.67
2021 3395 5.177327 GCCGATTGAAAAACACACAATCAAT 59.823 36.000 15.77 0.00 45.50 2.57
2022 3396 4.505922 GCCGATTGAAAAACACACAATCAA 59.494 37.500 15.77 0.00 45.50 2.57
2023 3397 4.047822 GCCGATTGAAAAACACACAATCA 58.952 39.130 15.77 0.00 45.50 2.57
2024 3398 3.428534 GGCCGATTGAAAAACACACAATC 59.571 43.478 0.00 0.00 43.33 2.67
2025 3399 3.389221 GGCCGATTGAAAAACACACAAT 58.611 40.909 0.00 0.00 37.03 2.71
2026 3400 2.796383 CGGCCGATTGAAAAACACACAA 60.796 45.455 24.07 0.00 0.00 3.33
2027 3401 1.268794 CGGCCGATTGAAAAACACACA 60.269 47.619 24.07 0.00 0.00 3.72
2028 3402 1.268845 ACGGCCGATTGAAAAACACAC 60.269 47.619 35.90 0.00 0.00 3.82
2029 3403 1.002251 GACGGCCGATTGAAAAACACA 60.002 47.619 35.90 0.00 0.00 3.72
2030 3404 1.681825 GACGGCCGATTGAAAAACAC 58.318 50.000 35.90 4.01 0.00 3.32
2031 3405 0.236187 CGACGGCCGATTGAAAAACA 59.764 50.000 35.90 0.00 41.76 2.83
2032 3406 1.063412 GCGACGGCCGATTGAAAAAC 61.063 55.000 35.90 9.68 41.76 2.43
2033 3407 1.208103 GCGACGGCCGATTGAAAAA 59.792 52.632 35.90 0.00 41.76 1.94
2034 3408 2.864589 GCGACGGCCGATTGAAAA 59.135 55.556 35.90 0.00 41.76 2.29
2044 3418 0.315568 ATTAGATGAGAGGCGACGGC 59.684 55.000 14.41 14.41 38.90 5.68
2045 3419 2.802787 AATTAGATGAGAGGCGACGG 57.197 50.000 0.00 0.00 0.00 4.79
2046 3420 5.048153 TCATAATTAGATGAGAGGCGACG 57.952 43.478 0.00 0.00 32.05 5.12
2055 3429 3.306989 CCAGCCGCCTCATAATTAGATGA 60.307 47.826 0.00 0.00 34.64 2.92
2056 3430 3.005554 CCAGCCGCCTCATAATTAGATG 58.994 50.000 0.00 0.00 0.00 2.90
2057 3431 2.906389 TCCAGCCGCCTCATAATTAGAT 59.094 45.455 0.00 0.00 0.00 1.98
2058 3432 2.037251 GTCCAGCCGCCTCATAATTAGA 59.963 50.000 0.00 0.00 0.00 2.10
2059 3433 2.037772 AGTCCAGCCGCCTCATAATTAG 59.962 50.000 0.00 0.00 0.00 1.73
2060 3434 2.047061 AGTCCAGCCGCCTCATAATTA 58.953 47.619 0.00 0.00 0.00 1.40
2061 3435 0.839946 AGTCCAGCCGCCTCATAATT 59.160 50.000 0.00 0.00 0.00 1.40
2062 3436 0.839946 AAGTCCAGCCGCCTCATAAT 59.160 50.000 0.00 0.00 0.00 1.28
2063 3437 0.178068 GAAGTCCAGCCGCCTCATAA 59.822 55.000 0.00 0.00 0.00 1.90
2064 3438 1.686325 GGAAGTCCAGCCGCCTCATA 61.686 60.000 0.00 0.00 35.64 2.15
2065 3439 2.586792 GAAGTCCAGCCGCCTCAT 59.413 61.111 0.00 0.00 0.00 2.90
2066 3440 3.706373 GGAAGTCCAGCCGCCTCA 61.706 66.667 0.00 0.00 35.64 3.86
2067 3441 4.475135 GGGAAGTCCAGCCGCCTC 62.475 72.222 0.00 0.00 37.91 4.70
2072 3446 3.842925 TTGCACGGGAAGTCCAGCC 62.843 63.158 0.00 0.00 35.92 4.85
2073 3447 2.281484 TTGCACGGGAAGTCCAGC 60.281 61.111 0.00 1.04 37.91 4.85
2074 3448 0.250295 TTCTTGCACGGGAAGTCCAG 60.250 55.000 0.00 0.00 37.91 3.86
2075 3449 0.181587 TTTCTTGCACGGGAAGTCCA 59.818 50.000 0.00 0.00 37.91 4.02
2076 3450 1.266989 CTTTTCTTGCACGGGAAGTCC 59.733 52.381 0.00 0.00 0.00 3.85
2077 3451 1.266989 CCTTTTCTTGCACGGGAAGTC 59.733 52.381 0.00 0.00 0.00 3.01
2078 3452 1.133915 TCCTTTTCTTGCACGGGAAGT 60.134 47.619 0.00 0.00 0.00 3.01
2079 3453 1.266989 GTCCTTTTCTTGCACGGGAAG 59.733 52.381 0.00 0.00 0.00 3.46
2080 3454 1.133915 AGTCCTTTTCTTGCACGGGAA 60.134 47.619 0.00 0.00 0.00 3.97
2081 3455 0.472471 AGTCCTTTTCTTGCACGGGA 59.528 50.000 0.00 0.00 0.00 5.14
2082 3456 0.875059 GAGTCCTTTTCTTGCACGGG 59.125 55.000 0.00 0.00 0.00 5.28
2083 3457 0.875059 GGAGTCCTTTTCTTGCACGG 59.125 55.000 0.41 0.00 0.00 4.94
2084 3458 1.593196 TGGAGTCCTTTTCTTGCACG 58.407 50.000 11.33 0.00 0.00 5.34
2085 3459 4.037923 TGATTTGGAGTCCTTTTCTTGCAC 59.962 41.667 11.33 0.00 0.00 4.57
2086 3460 4.037923 GTGATTTGGAGTCCTTTTCTTGCA 59.962 41.667 11.33 0.00 0.00 4.08
2087 3461 4.550422 GTGATTTGGAGTCCTTTTCTTGC 58.450 43.478 11.33 0.00 0.00 4.01
2088 3462 4.275936 ACGTGATTTGGAGTCCTTTTCTTG 59.724 41.667 11.33 0.00 0.00 3.02
2089 3463 4.461198 ACGTGATTTGGAGTCCTTTTCTT 58.539 39.130 11.33 0.00 0.00 2.52
2090 3464 4.065789 GACGTGATTTGGAGTCCTTTTCT 58.934 43.478 11.33 0.00 0.00 2.52
2091 3465 3.188667 GGACGTGATTTGGAGTCCTTTTC 59.811 47.826 11.33 4.91 46.99 2.29
2092 3466 3.146847 GGACGTGATTTGGAGTCCTTTT 58.853 45.455 11.33 0.00 46.99 2.27
2093 3467 2.779506 GGACGTGATTTGGAGTCCTTT 58.220 47.619 11.33 0.00 46.99 3.11
2094 3468 2.474410 GGACGTGATTTGGAGTCCTT 57.526 50.000 11.33 0.00 46.99 3.36
2097 3471 4.003648 AGATTTGGACGTGATTTGGAGTC 58.996 43.478 0.00 0.00 0.00 3.36
2098 3472 4.021102 AGATTTGGACGTGATTTGGAGT 57.979 40.909 0.00 0.00 0.00 3.85
2099 3473 5.376854 AAAGATTTGGACGTGATTTGGAG 57.623 39.130 0.00 0.00 0.00 3.86
2100 3474 5.300539 TGAAAAGATTTGGACGTGATTTGGA 59.699 36.000 0.00 0.00 0.00 3.53
2101 3475 5.527951 TGAAAAGATTTGGACGTGATTTGG 58.472 37.500 0.00 0.00 0.00 3.28
2102 3476 7.462109 TTTGAAAAGATTTGGACGTGATTTG 57.538 32.000 0.00 0.00 0.00 2.32
2103 3477 8.661352 ATTTTGAAAAGATTTGGACGTGATTT 57.339 26.923 0.00 0.00 0.00 2.17
2104 3478 8.661352 AATTTTGAAAAGATTTGGACGTGATT 57.339 26.923 0.00 0.00 0.00 2.57
2105 3479 9.757227 TTAATTTTGAAAAGATTTGGACGTGAT 57.243 25.926 0.00 0.00 0.00 3.06
2106 3480 9.026074 GTTAATTTTGAAAAGATTTGGACGTGA 57.974 29.630 0.00 0.00 0.00 4.35
2107 3481 8.272866 GGTTAATTTTGAAAAGATTTGGACGTG 58.727 33.333 0.00 0.00 0.00 4.49
2108 3482 7.168469 CGGTTAATTTTGAAAAGATTTGGACGT 59.832 33.333 0.00 0.00 0.00 4.34
2109 3483 7.380065 TCGGTTAATTTTGAAAAGATTTGGACG 59.620 33.333 0.00 0.00 0.00 4.79
2110 3484 8.582433 TCGGTTAATTTTGAAAAGATTTGGAC 57.418 30.769 0.00 0.00 0.00 4.02
2111 3485 9.036671 GTTCGGTTAATTTTGAAAAGATTTGGA 57.963 29.630 0.00 0.00 0.00 3.53
2112 3486 9.040939 AGTTCGGTTAATTTTGAAAAGATTTGG 57.959 29.630 0.00 0.00 0.00 3.28
2114 3488 8.964150 CGAGTTCGGTTAATTTTGAAAAGATTT 58.036 29.630 0.00 0.00 35.37 2.17
2115 3489 8.502161 CGAGTTCGGTTAATTTTGAAAAGATT 57.498 30.769 0.00 0.00 35.37 2.40
2133 3507 2.603560 GACTTGCCTAAATCCGAGTTCG 59.396 50.000 0.00 0.00 39.44 3.95
2134 3508 3.619038 CAGACTTGCCTAAATCCGAGTTC 59.381 47.826 0.00 0.00 0.00 3.01
2135 3509 3.600388 CAGACTTGCCTAAATCCGAGTT 58.400 45.455 0.00 0.00 0.00 3.01
2136 3510 2.093447 CCAGACTTGCCTAAATCCGAGT 60.093 50.000 0.00 0.00 0.00 4.18
2137 3511 2.555199 CCAGACTTGCCTAAATCCGAG 58.445 52.381 0.00 0.00 0.00 4.63
2138 3512 1.209504 CCCAGACTTGCCTAAATCCGA 59.790 52.381 0.00 0.00 0.00 4.55
2139 3513 1.209504 TCCCAGACTTGCCTAAATCCG 59.790 52.381 0.00 0.00 0.00 4.18
2140 3514 2.026262 TGTCCCAGACTTGCCTAAATCC 60.026 50.000 0.00 0.00 33.15 3.01
2141 3515 3.350219 TGTCCCAGACTTGCCTAAATC 57.650 47.619 0.00 0.00 33.15 2.17
2142 3516 3.181434 TGTTGTCCCAGACTTGCCTAAAT 60.181 43.478 0.00 0.00 33.15 1.40
2143 3517 2.173782 TGTTGTCCCAGACTTGCCTAAA 59.826 45.455 0.00 0.00 33.15 1.85
2144 3518 1.771854 TGTTGTCCCAGACTTGCCTAA 59.228 47.619 0.00 0.00 33.15 2.69
2145 3519 1.347707 CTGTTGTCCCAGACTTGCCTA 59.652 52.381 0.00 0.00 34.23 3.93
2146 3520 0.109342 CTGTTGTCCCAGACTTGCCT 59.891 55.000 0.00 0.00 34.23 4.75
2147 3521 0.179018 ACTGTTGTCCCAGACTTGCC 60.179 55.000 0.00 0.00 36.30 4.52
2148 3522 1.604278 GAACTGTTGTCCCAGACTTGC 59.396 52.381 0.00 0.00 36.30 4.01
2149 3523 2.874701 CTGAACTGTTGTCCCAGACTTG 59.125 50.000 0.00 0.00 36.30 3.16
2150 3524 2.505819 ACTGAACTGTTGTCCCAGACTT 59.494 45.455 12.28 0.00 36.30 3.01
2151 3525 2.119495 ACTGAACTGTTGTCCCAGACT 58.881 47.619 12.28 0.00 36.30 3.24
2152 3526 2.622064 ACTGAACTGTTGTCCCAGAC 57.378 50.000 12.28 0.00 36.30 3.51
2153 3527 3.644966 AAACTGAACTGTTGTCCCAGA 57.355 42.857 12.28 0.00 36.30 3.86
2154 3528 4.718940 AAAAACTGAACTGTTGTCCCAG 57.281 40.909 0.00 1.47 38.45 4.45
2155 3529 4.642885 CCTAAAAACTGAACTGTTGTCCCA 59.357 41.667 0.00 0.00 0.00 4.37
2156 3530 4.643334 ACCTAAAAACTGAACTGTTGTCCC 59.357 41.667 0.00 0.00 0.00 4.46
2157 3531 5.220989 GGACCTAAAAACTGAACTGTTGTCC 60.221 44.000 0.00 0.74 33.79 4.02
2158 3532 5.503520 CGGACCTAAAAACTGAACTGTTGTC 60.504 44.000 0.00 0.00 0.00 3.18
2159 3533 4.334481 CGGACCTAAAAACTGAACTGTTGT 59.666 41.667 0.00 0.00 0.00 3.32
2160 3534 4.573201 TCGGACCTAAAAACTGAACTGTTG 59.427 41.667 0.00 0.00 0.00 3.33
2161 3535 4.573607 GTCGGACCTAAAAACTGAACTGTT 59.426 41.667 0.00 0.00 0.00 3.16
2162 3536 4.124970 GTCGGACCTAAAAACTGAACTGT 58.875 43.478 0.00 0.00 0.00 3.55
2163 3537 4.124238 TGTCGGACCTAAAAACTGAACTG 58.876 43.478 5.55 0.00 0.00 3.16
2164 3538 4.377897 CTGTCGGACCTAAAAACTGAACT 58.622 43.478 5.55 0.00 0.00 3.01
2165 3539 3.497262 CCTGTCGGACCTAAAAACTGAAC 59.503 47.826 5.55 0.00 0.00 3.18
2166 3540 3.735591 CCTGTCGGACCTAAAAACTGAA 58.264 45.455 5.55 0.00 0.00 3.02
2167 3541 2.549349 GCCTGTCGGACCTAAAAACTGA 60.549 50.000 5.55 0.00 0.00 3.41
2168 3542 1.804748 GCCTGTCGGACCTAAAAACTG 59.195 52.381 5.55 0.00 0.00 3.16
2169 3543 1.271217 GGCCTGTCGGACCTAAAAACT 60.271 52.381 5.55 0.00 29.06 2.66
2170 3544 1.162698 GGCCTGTCGGACCTAAAAAC 58.837 55.000 5.55 0.00 29.06 2.43
2171 3545 0.766131 TGGCCTGTCGGACCTAAAAA 59.234 50.000 3.32 0.00 37.62 1.94
2172 3546 0.988832 ATGGCCTGTCGGACCTAAAA 59.011 50.000 3.32 0.00 37.62 1.52
2173 3547 1.868713 TATGGCCTGTCGGACCTAAA 58.131 50.000 3.32 0.00 37.62 1.85
2174 3548 1.868713 TTATGGCCTGTCGGACCTAA 58.131 50.000 3.32 0.00 37.62 2.69
2175 3549 1.483415 GTTTATGGCCTGTCGGACCTA 59.517 52.381 3.32 0.00 37.62 3.08
2176 3550 0.252197 GTTTATGGCCTGTCGGACCT 59.748 55.000 3.32 0.00 37.62 3.85
2177 3551 1.087771 CGTTTATGGCCTGTCGGACC 61.088 60.000 3.32 0.00 37.62 4.46
2178 3552 0.108520 TCGTTTATGGCCTGTCGGAC 60.109 55.000 3.32 0.00 39.55 4.79
2179 3553 0.174845 CTCGTTTATGGCCTGTCGGA 59.825 55.000 3.32 0.00 0.00 4.55
2180 3554 1.429148 GCTCGTTTATGGCCTGTCGG 61.429 60.000 3.32 0.00 0.00 4.79
2181 3555 0.460284 AGCTCGTTTATGGCCTGTCG 60.460 55.000 3.32 2.09 0.00 4.35
2182 3556 1.291132 GAGCTCGTTTATGGCCTGTC 58.709 55.000 3.32 0.00 0.00 3.51
2183 3557 0.460284 CGAGCTCGTTTATGGCCTGT 60.460 55.000 27.79 0.00 34.11 4.00
2184 3558 1.154205 CCGAGCTCGTTTATGGCCTG 61.154 60.000 32.41 11.04 37.74 4.85
2185 3559 1.144057 CCGAGCTCGTTTATGGCCT 59.856 57.895 32.41 0.00 37.74 5.19
2186 3560 0.249911 ATCCGAGCTCGTTTATGGCC 60.250 55.000 32.41 0.00 37.74 5.36
2187 3561 0.861837 CATCCGAGCTCGTTTATGGC 59.138 55.000 32.41 0.00 37.74 4.40
2188 3562 2.509052 TCATCCGAGCTCGTTTATGG 57.491 50.000 32.41 17.32 37.74 2.74
2189 3563 3.706698 TCTTCATCCGAGCTCGTTTATG 58.293 45.455 32.41 28.36 37.74 1.90
2190 3564 4.038042 TCATCTTCATCCGAGCTCGTTTAT 59.962 41.667 32.41 20.18 37.74 1.40
2191 3565 3.380320 TCATCTTCATCCGAGCTCGTTTA 59.620 43.478 32.41 18.87 37.74 2.01
2192 3566 2.166459 TCATCTTCATCCGAGCTCGTTT 59.834 45.455 32.41 17.80 37.74 3.60
2193 3567 1.751351 TCATCTTCATCCGAGCTCGTT 59.249 47.619 32.41 18.17 37.74 3.85
2194 3568 1.336440 CTCATCTTCATCCGAGCTCGT 59.664 52.381 32.41 14.48 37.74 4.18
2195 3569 1.929926 GCTCATCTTCATCCGAGCTCG 60.930 57.143 29.06 29.06 45.86 5.03
2196 3570 1.782044 GCTCATCTTCATCCGAGCTC 58.218 55.000 2.73 2.73 45.86 4.09
2197 3571 3.984838 GCTCATCTTCATCCGAGCT 57.015 52.632 0.00 0.00 45.86 4.09
2199 3573 0.755079 TGGGCTCATCTTCATCCGAG 59.245 55.000 0.00 0.00 0.00 4.63
2200 3574 1.203237 TTGGGCTCATCTTCATCCGA 58.797 50.000 0.00 0.00 0.00 4.55
2201 3575 2.042686 TTTGGGCTCATCTTCATCCG 57.957 50.000 0.00 0.00 0.00 4.18
2202 3576 2.100418 GCTTTTGGGCTCATCTTCATCC 59.900 50.000 0.00 0.00 0.00 3.51
2203 3577 2.756760 TGCTTTTGGGCTCATCTTCATC 59.243 45.455 0.00 0.00 0.00 2.92
2204 3578 2.811410 TGCTTTTGGGCTCATCTTCAT 58.189 42.857 0.00 0.00 0.00 2.57
2205 3579 2.291209 TGCTTTTGGGCTCATCTTCA 57.709 45.000 0.00 0.00 0.00 3.02
2206 3580 3.665745 TTTGCTTTTGGGCTCATCTTC 57.334 42.857 0.00 0.00 0.00 2.87
2207 3581 4.628963 AATTTGCTTTTGGGCTCATCTT 57.371 36.364 0.00 0.00 0.00 2.40
2208 3582 4.040706 TCAAATTTGCTTTTGGGCTCATCT 59.959 37.500 13.54 0.00 37.23 2.90
2209 3583 4.152938 GTCAAATTTGCTTTTGGGCTCATC 59.847 41.667 13.54 0.00 37.23 2.92
2210 3584 4.067192 GTCAAATTTGCTTTTGGGCTCAT 58.933 39.130 13.54 0.00 37.23 2.90
2211 3585 3.465871 GTCAAATTTGCTTTTGGGCTCA 58.534 40.909 13.54 0.00 37.23 4.26
2212 3586 2.807967 GGTCAAATTTGCTTTTGGGCTC 59.192 45.455 13.54 0.00 37.23 4.70
2213 3587 2.806382 CGGTCAAATTTGCTTTTGGGCT 60.806 45.455 13.54 0.00 37.23 5.19
2214 3588 1.530720 CGGTCAAATTTGCTTTTGGGC 59.469 47.619 13.54 0.00 37.23 5.36
2215 3589 2.832563 ACGGTCAAATTTGCTTTTGGG 58.167 42.857 13.54 1.35 37.23 4.12
2216 3590 4.873768 AAACGGTCAAATTTGCTTTTGG 57.126 36.364 13.54 2.32 37.23 3.28
2217 3591 5.732185 GTCAAAACGGTCAAATTTGCTTTTG 59.268 36.000 21.87 21.87 37.83 2.44
2218 3592 5.445275 CGTCAAAACGGTCAAATTTGCTTTT 60.445 36.000 13.54 10.44 45.21 2.27
2219 3593 4.032331 CGTCAAAACGGTCAAATTTGCTTT 59.968 37.500 13.54 5.46 45.21 3.51
2220 3594 3.549873 CGTCAAAACGGTCAAATTTGCTT 59.450 39.130 13.54 0.00 45.21 3.91
2221 3595 3.112580 CGTCAAAACGGTCAAATTTGCT 58.887 40.909 13.54 0.00 45.21 3.91
2222 3596 3.481690 CGTCAAAACGGTCAAATTTGC 57.518 42.857 13.54 8.47 45.21 3.68
2233 3607 8.196901 ATGAAAGTTGTTCATCTCGTCAAAACG 61.197 37.037 0.00 0.00 41.30 3.60
2234 3608 6.255215 TGAAAGTTGTTCATCTCGTCAAAAC 58.745 36.000 0.00 0.00 0.00 2.43
2235 3609 6.429791 TGAAAGTTGTTCATCTCGTCAAAA 57.570 33.333 0.00 0.00 0.00 2.44
2236 3610 6.038161 ACATGAAAGTTGTTCATCTCGTCAAA 59.962 34.615 0.00 0.00 37.06 2.69
2237 3611 5.527214 ACATGAAAGTTGTTCATCTCGTCAA 59.473 36.000 0.00 0.00 37.06 3.18
2238 3612 5.056480 ACATGAAAGTTGTTCATCTCGTCA 58.944 37.500 0.00 0.00 37.06 4.35
2239 3613 5.597813 ACATGAAAGTTGTTCATCTCGTC 57.402 39.130 0.00 0.00 37.06 4.20
2240 3614 5.527214 TCAACATGAAAGTTGTTCATCTCGT 59.473 36.000 0.00 0.00 46.78 4.18
2241 3615 5.989249 TCAACATGAAAGTTGTTCATCTCG 58.011 37.500 0.00 0.00 46.78 4.04
2242 3616 6.358030 CGTTCAACATGAAAGTTGTTCATCTC 59.642 38.462 0.00 0.00 46.78 2.75
2243 3617 6.183360 ACGTTCAACATGAAAGTTGTTCATCT 60.183 34.615 0.00 0.00 44.43 2.90
2244 3618 5.971202 ACGTTCAACATGAAAGTTGTTCATC 59.029 36.000 0.00 0.00 44.43 2.92
2245 3619 5.890334 ACGTTCAACATGAAAGTTGTTCAT 58.110 33.333 0.00 0.00 44.43 2.57
2246 3620 5.303747 ACGTTCAACATGAAAGTTGTTCA 57.696 34.783 0.00 0.00 44.43 3.18
2269 3643 5.942236 CCTCAAGATGGTCTCTGATGAAAAA 59.058 40.000 0.00 0.00 33.29 1.94
2270 3644 5.494724 CCTCAAGATGGTCTCTGATGAAAA 58.505 41.667 0.00 0.00 33.29 2.29
2271 3645 4.080695 CCCTCAAGATGGTCTCTGATGAAA 60.081 45.833 0.00 0.00 33.29 2.69
2272 3646 3.453717 CCCTCAAGATGGTCTCTGATGAA 59.546 47.826 0.00 0.00 33.29 2.57
2273 3647 3.036819 CCCTCAAGATGGTCTCTGATGA 58.963 50.000 0.00 0.00 33.29 2.92
2274 3648 2.104451 CCCCTCAAGATGGTCTCTGATG 59.896 54.545 0.00 0.00 33.29 3.07
2275 3649 2.406559 CCCCTCAAGATGGTCTCTGAT 58.593 52.381 0.00 0.00 33.29 2.90
2276 3650 1.623557 CCCCCTCAAGATGGTCTCTGA 60.624 57.143 0.00 0.00 33.29 3.27
2277 3651 0.835941 CCCCCTCAAGATGGTCTCTG 59.164 60.000 0.00 0.00 33.29 3.35
2278 3652 3.331252 CCCCCTCAAGATGGTCTCT 57.669 57.895 0.00 0.00 34.96 3.10
2293 3667 2.297315 CAGAAAAAGAGCAGAAACCCCC 59.703 50.000 0.00 0.00 0.00 5.40
2294 3668 3.222603 TCAGAAAAAGAGCAGAAACCCC 58.777 45.455 0.00 0.00 0.00 4.95
2295 3669 4.339530 ACTTCAGAAAAAGAGCAGAAACCC 59.660 41.667 0.00 0.00 0.00 4.11
2296 3670 5.298026 AGACTTCAGAAAAAGAGCAGAAACC 59.702 40.000 0.00 0.00 0.00 3.27
2297 3671 6.197981 CAGACTTCAGAAAAAGAGCAGAAAC 58.802 40.000 0.00 0.00 0.00 2.78
2298 3672 5.297776 CCAGACTTCAGAAAAAGAGCAGAAA 59.702 40.000 0.00 0.00 0.00 2.52
2299 3673 4.818546 CCAGACTTCAGAAAAAGAGCAGAA 59.181 41.667 0.00 0.00 0.00 3.02
2300 3674 4.384056 CCAGACTTCAGAAAAAGAGCAGA 58.616 43.478 0.00 0.00 0.00 4.26
2301 3675 3.501445 CCCAGACTTCAGAAAAAGAGCAG 59.499 47.826 0.00 0.00 0.00 4.24
2302 3676 3.480470 CCCAGACTTCAGAAAAAGAGCA 58.520 45.455 0.00 0.00 0.00 4.26
2303 3677 2.816672 CCCCAGACTTCAGAAAAAGAGC 59.183 50.000 0.00 0.00 0.00 4.09
2304 3678 2.816672 GCCCCAGACTTCAGAAAAAGAG 59.183 50.000 0.00 0.00 0.00 2.85
2305 3679 2.174639 TGCCCCAGACTTCAGAAAAAGA 59.825 45.455 0.00 0.00 0.00 2.52
2306 3680 2.555757 CTGCCCCAGACTTCAGAAAAAG 59.444 50.000 0.00 0.00 32.44 2.27
2307 3681 2.174639 TCTGCCCCAGACTTCAGAAAAA 59.825 45.455 0.00 0.00 35.39 1.94
2308 3682 1.774254 TCTGCCCCAGACTTCAGAAAA 59.226 47.619 0.00 0.00 35.39 2.29
2309 3683 1.434188 TCTGCCCCAGACTTCAGAAA 58.566 50.000 0.00 0.00 35.39 2.52
2310 3684 1.434188 TTCTGCCCCAGACTTCAGAA 58.566 50.000 0.00 0.00 40.46 3.02
2311 3685 1.434188 TTTCTGCCCCAGACTTCAGA 58.566 50.000 0.00 0.00 40.46 3.27
2312 3686 2.276732 TTTTCTGCCCCAGACTTCAG 57.723 50.000 0.00 0.00 40.46 3.02
2313 3687 2.746279 TTTTTCTGCCCCAGACTTCA 57.254 45.000 0.00 0.00 40.46 3.02
2314 3688 2.493675 GGATTTTTCTGCCCCAGACTTC 59.506 50.000 0.00 0.00 40.46 3.01
2315 3689 2.158325 TGGATTTTTCTGCCCCAGACTT 60.158 45.455 0.00 0.00 40.46 3.01
2316 3690 1.428912 TGGATTTTTCTGCCCCAGACT 59.571 47.619 0.00 0.00 40.46 3.24
2317 3691 1.923356 TGGATTTTTCTGCCCCAGAC 58.077 50.000 0.00 0.00 40.46 3.51
2318 3692 2.692709 TTGGATTTTTCTGCCCCAGA 57.307 45.000 0.00 0.00 38.87 3.86
2319 3693 3.402110 GTTTTGGATTTTTCTGCCCCAG 58.598 45.455 0.00 0.00 0.00 4.45
2320 3694 2.105649 GGTTTTGGATTTTTCTGCCCCA 59.894 45.455 0.00 0.00 0.00 4.96
2321 3695 2.778299 GGTTTTGGATTTTTCTGCCCC 58.222 47.619 0.00 0.00 0.00 5.80


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.