Multiple sequence alignment - TraesCS2B01G522800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G522800 chr2B 100.000 3757 0 0 1 3757 717471490 717475246 0.000000e+00 6938.0
1 TraesCS2B01G522800 chr2B 95.930 172 7 0 124 295 793708293 793708464 2.860000e-71 279.0
2 TraesCS2B01G522800 chr2D 90.638 1976 93 50 718 2650 591953007 591954933 0.000000e+00 2540.0
3 TraesCS2B01G522800 chr2D 93.541 929 39 11 2837 3757 591955594 591956509 0.000000e+00 1363.0
4 TraesCS2B01G522800 chr2D 89.474 133 7 3 3 128 591952423 591952555 1.080000e-35 161.0
5 TraesCS2B01G522800 chr2A 89.269 1752 95 40 969 2678 726417715 726419415 0.000000e+00 2108.0
6 TraesCS2B01G522800 chr2A 91.549 923 56 12 2837 3757 726420991 726421893 0.000000e+00 1253.0
7 TraesCS2B01G522800 chr2A 84.699 366 31 9 368 726 726416462 726416809 3.590000e-90 342.0
8 TraesCS2B01G522800 chr2A 90.338 207 19 1 742 948 726417192 726417397 1.720000e-68 270.0
9 TraesCS2B01G522800 chr2A 85.455 110 9 5 2670 2774 726419731 726419838 1.430000e-19 108.0
10 TraesCS2B01G522800 chr2A 97.561 41 1 0 300 340 726416437 726416477 1.870000e-08 71.3
11 TraesCS2B01G522800 chr5B 84.968 632 53 19 3130 3742 709331873 709332481 1.490000e-168 603.0
12 TraesCS2B01G522800 chr5B 96.970 165 5 0 125 289 338489035 338489199 1.030000e-70 278.0
13 TraesCS2B01G522800 chr5B 96.386 166 6 0 125 290 145828344 145828179 1.330000e-69 274.0
14 TraesCS2B01G522800 chr4A 85.868 559 45 18 3130 3672 605733498 605732958 7.040000e-157 564.0
15 TraesCS2B01G522800 chr4A 75.357 280 38 22 2460 2715 453609493 453609221 5.130000e-19 106.0
16 TraesCS2B01G522800 chr5D 85.689 559 41 14 3134 3672 557214112 557213573 1.520000e-153 553.0
17 TraesCS2B01G522800 chr5D 89.831 59 5 1 2651 2708 403937270 403937212 1.450000e-09 75.0
18 TraesCS2B01G522800 chr6D 98.160 163 3 0 125 287 81746930 81746768 6.140000e-73 285.0
19 TraesCS2B01G522800 chr3D 97.041 169 4 1 119 287 596058970 596059137 2.210000e-72 283.0
20 TraesCS2B01G522800 chr6B 97.006 167 5 0 125 291 229680946 229680780 7.950000e-72 281.0
21 TraesCS2B01G522800 chr3A 96.429 168 6 0 125 292 731100877 731100710 1.030000e-70 278.0
22 TraesCS2B01G522800 chr1B 94.857 175 7 1 124 298 120646733 120646561 4.780000e-69 272.0
23 TraesCS2B01G522800 chr1B 89.865 148 8 3 3 144 628795880 628796026 2.300000e-42 183.0
24 TraesCS2B01G522800 chr1A 94.798 173 9 0 125 297 492657471 492657299 1.720000e-68 270.0
25 TraesCS2B01G522800 chr4D 78.283 198 21 18 2532 2708 121437261 121437065 1.430000e-19 108.0
26 TraesCS2B01G522800 chr4B 77.143 210 26 18 2533 2721 184238087 184237879 6.640000e-18 102.0
27 TraesCS2B01G522800 chr7D 83.000 100 13 3 2613 2708 128787063 128787162 1.860000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G522800 chr2B 717471490 717475246 3756 False 6938.000000 6938 100.000000 1 3757 1 chr2B.!!$F1 3756
1 TraesCS2B01G522800 chr2D 591952423 591956509 4086 False 1354.666667 2540 91.217667 3 3757 3 chr2D.!!$F1 3754
2 TraesCS2B01G522800 chr2A 726416437 726421893 5456 False 692.050000 2108 89.811833 300 3757 6 chr2A.!!$F1 3457
3 TraesCS2B01G522800 chr5B 709331873 709332481 608 False 603.000000 603 84.968000 3130 3742 1 chr5B.!!$F2 612
4 TraesCS2B01G522800 chr4A 605732958 605733498 540 True 564.000000 564 85.868000 3130 3672 1 chr4A.!!$R2 542
5 TraesCS2B01G522800 chr5D 557213573 557214112 539 True 553.000000 553 85.689000 3134 3672 1 chr5D.!!$R2 538


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
32 33 0.260230 TGGTTTGCAGGGTGGAAAGA 59.740 50.0 0.00 0.00 38.34 2.52 F
242 250 0.388294 GCTCCGTATGTAGTCCACCC 59.612 60.0 0.00 0.00 0.00 4.61 F
458 473 0.537188 ATTGTACGCCTGGAGTGGAG 59.463 55.0 13.68 0.00 0.00 3.86 F
1195 1902 0.591741 GGATCATGTCGACGTCGGAC 60.592 60.0 35.05 28.73 40.29 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1015 1718 0.468226 TCTCAAGGCTTTGTGTCCGT 59.532 50.0 8.56 0.0 35.73 4.69 R
1614 2324 0.526524 GTCGCTCCTCATGAAGTCCG 60.527 60.0 0.00 0.0 0.00 4.79 R
2368 3078 0.388649 GCACGAACGTGGACTGATCT 60.389 55.0 24.71 0.0 45.49 2.75 R
3110 5468 0.249405 AGGCCGCAATTTTGTGTGTG 60.249 50.0 0.00 0.0 36.98 3.82 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 2.173519 CATTCTGATGGTTTGCAGGGT 58.826 47.619 0.00 0.00 33.05 4.34
32 33 0.260230 TGGTTTGCAGGGTGGAAAGA 59.740 50.000 0.00 0.00 38.34 2.52
38 39 2.790433 TGCAGGGTGGAAAGATTGTAC 58.210 47.619 0.00 0.00 0.00 2.90
39 40 2.107378 TGCAGGGTGGAAAGATTGTACA 59.893 45.455 0.00 0.00 0.00 2.90
40 41 3.245229 TGCAGGGTGGAAAGATTGTACAT 60.245 43.478 0.00 0.00 0.00 2.29
42 43 4.588899 CAGGGTGGAAAGATTGTACATCA 58.411 43.478 0.00 0.00 0.00 3.07
43 44 4.396166 CAGGGTGGAAAGATTGTACATCAC 59.604 45.833 0.00 0.00 0.00 3.06
45 46 4.396166 GGGTGGAAAGATTGTACATCACAG 59.604 45.833 0.00 0.00 38.72 3.66
101 109 3.558931 TGTTCAAACAGAAGGCAGAGA 57.441 42.857 0.00 0.00 36.78 3.10
113 121 2.813907 AGGCAGAGAAGCTCTTGAGTA 58.186 47.619 0.00 0.00 38.99 2.59
133 141 2.468915 AGCTTACAAGGTACTCCCTCC 58.531 52.381 0.00 0.00 45.47 4.30
134 142 2.185387 GCTTACAAGGTACTCCCTCCA 58.815 52.381 0.00 0.00 45.47 3.86
135 143 2.772515 GCTTACAAGGTACTCCCTCCAT 59.227 50.000 0.00 0.00 45.47 3.41
136 144 3.200165 GCTTACAAGGTACTCCCTCCATT 59.800 47.826 0.00 0.00 45.47 3.16
137 145 4.683671 GCTTACAAGGTACTCCCTCCATTC 60.684 50.000 0.00 0.00 45.47 2.67
138 146 2.197465 ACAAGGTACTCCCTCCATTCC 58.803 52.381 0.00 0.00 45.47 3.01
139 147 2.225908 ACAAGGTACTCCCTCCATTCCT 60.226 50.000 0.00 0.00 45.47 3.36
140 148 3.013648 ACAAGGTACTCCCTCCATTCCTA 59.986 47.826 0.00 0.00 45.47 2.94
141 149 4.037927 CAAGGTACTCCCTCCATTCCTAA 58.962 47.826 0.00 0.00 45.47 2.69
142 150 4.363546 AGGTACTCCCTCCATTCCTAAA 57.636 45.455 0.00 0.00 40.71 1.85
143 151 4.909284 AGGTACTCCCTCCATTCCTAAAT 58.091 43.478 0.00 0.00 40.71 1.40
144 152 6.051946 AGGTACTCCCTCCATTCCTAAATA 57.948 41.667 0.00 0.00 40.71 1.40
145 153 6.644882 AGGTACTCCCTCCATTCCTAAATAT 58.355 40.000 0.00 0.00 40.71 1.28
146 154 7.786968 AGGTACTCCCTCCATTCCTAAATATA 58.213 38.462 0.00 0.00 40.71 0.86
148 156 8.541234 GGTACTCCCTCCATTCCTAAATATAAG 58.459 40.741 0.00 0.00 0.00 1.73
149 157 9.102453 GTACTCCCTCCATTCCTAAATATAAGT 57.898 37.037 0.00 0.00 0.00 2.24
150 158 8.208575 ACTCCCTCCATTCCTAAATATAAGTC 57.791 38.462 0.00 0.00 0.00 3.01
151 159 8.019652 ACTCCCTCCATTCCTAAATATAAGTCT 58.980 37.037 0.00 0.00 0.00 3.24
153 161 9.237706 TCCCTCCATTCCTAAATATAAGTCTTT 57.762 33.333 0.00 0.00 0.00 2.52
154 162 9.289782 CCCTCCATTCCTAAATATAAGTCTTTG 57.710 37.037 0.00 0.00 0.00 2.77
155 163 9.853177 CCTCCATTCCTAAATATAAGTCTTTGT 57.147 33.333 0.00 0.00 0.00 2.83
171 179 7.962995 AGTCTTTGTAGAGATTCCACTATGA 57.037 36.000 0.00 0.00 0.00 2.15
172 180 8.367660 AGTCTTTGTAGAGATTCCACTATGAA 57.632 34.615 0.00 0.00 0.00 2.57
173 181 8.254508 AGTCTTTGTAGAGATTCCACTATGAAC 58.745 37.037 0.00 0.00 0.00 3.18
174 182 8.254508 GTCTTTGTAGAGATTCCACTATGAACT 58.745 37.037 0.00 0.00 0.00 3.01
175 183 9.475620 TCTTTGTAGAGATTCCACTATGAACTA 57.524 33.333 0.00 0.00 0.00 2.24
177 185 8.589701 TTGTAGAGATTCCACTATGAACTACA 57.410 34.615 0.00 0.00 33.29 2.74
178 186 8.768501 TGTAGAGATTCCACTATGAACTACAT 57.231 34.615 0.00 0.00 42.39 2.29
179 187 9.862149 TGTAGAGATTCCACTATGAACTACATA 57.138 33.333 0.00 0.00 40.07 2.29
181 189 7.877003 AGAGATTCCACTATGAACTACATACG 58.123 38.462 0.00 0.00 40.07 3.06
182 190 6.982852 AGATTCCACTATGAACTACATACGG 58.017 40.000 0.00 0.00 40.07 4.02
183 191 6.776116 AGATTCCACTATGAACTACATACGGA 59.224 38.462 0.00 0.00 40.07 4.69
184 192 6.971726 TTCCACTATGAACTACATACGGAT 57.028 37.500 0.00 0.00 37.58 4.18
185 193 6.327279 TCCACTATGAACTACATACGGATG 57.673 41.667 5.94 5.94 40.07 3.51
187 195 6.999871 TCCACTATGAACTACATACGGATGTA 59.000 38.462 19.32 19.32 44.77 2.29
188 196 7.668469 TCCACTATGAACTACATACGGATGTAT 59.332 37.037 20.64 7.28 45.42 2.29
189 197 8.953313 CCACTATGAACTACATACGGATGTATA 58.047 37.037 20.64 10.04 45.42 1.47
196 204 9.666626 GAACTACATACGGATGTATATAGATGC 57.333 37.037 20.64 0.00 45.42 3.91
197 205 8.747538 ACTACATACGGATGTATATAGATGCA 57.252 34.615 20.64 0.00 45.42 3.96
198 206 9.355916 ACTACATACGGATGTATATAGATGCAT 57.644 33.333 20.64 0.00 45.42 3.96
201 209 9.890629 ACATACGGATGTATATAGATGCATTTT 57.109 29.630 12.79 0.00 44.77 1.82
205 213 9.944376 ACGGATGTATATAGATGCATTTTAAGT 57.056 29.630 11.19 0.00 38.38 2.24
214 222 6.839124 AGATGCATTTTAAGTGTGGATTCA 57.161 33.333 0.00 0.00 0.00 2.57
215 223 7.414222 AGATGCATTTTAAGTGTGGATTCAT 57.586 32.000 0.00 0.00 0.00 2.57
216 224 7.844009 AGATGCATTTTAAGTGTGGATTCATT 58.156 30.769 0.00 0.00 0.00 2.57
217 225 7.977853 AGATGCATTTTAAGTGTGGATTCATTC 59.022 33.333 0.00 0.00 0.00 2.67
218 226 6.990798 TGCATTTTAAGTGTGGATTCATTCA 58.009 32.000 0.00 0.00 0.00 2.57
219 227 7.613585 TGCATTTTAAGTGTGGATTCATTCAT 58.386 30.769 0.00 0.00 0.00 2.57
220 228 8.095792 TGCATTTTAAGTGTGGATTCATTCATT 58.904 29.630 0.00 0.00 0.00 2.57
221 229 8.938906 GCATTTTAAGTGTGGATTCATTCATTT 58.061 29.630 0.00 0.00 0.00 2.32
224 232 7.887996 TTAAGTGTGGATTCATTCATTTTGC 57.112 32.000 0.00 0.00 0.00 3.68
225 233 5.733620 AGTGTGGATTCATTCATTTTGCT 57.266 34.783 0.00 0.00 0.00 3.91
226 234 5.717119 AGTGTGGATTCATTCATTTTGCTC 58.283 37.500 0.00 0.00 0.00 4.26
227 235 4.866486 GTGTGGATTCATTCATTTTGCTCC 59.134 41.667 0.00 0.00 0.00 4.70
228 236 4.107622 GTGGATTCATTCATTTTGCTCCG 58.892 43.478 0.00 0.00 0.00 4.63
229 237 3.763360 TGGATTCATTCATTTTGCTCCGT 59.237 39.130 0.00 0.00 0.00 4.69
230 238 4.946772 TGGATTCATTCATTTTGCTCCGTA 59.053 37.500 0.00 0.00 0.00 4.02
231 239 5.593909 TGGATTCATTCATTTTGCTCCGTAT 59.406 36.000 0.00 0.00 0.00 3.06
232 240 5.916883 GGATTCATTCATTTTGCTCCGTATG 59.083 40.000 0.00 0.00 0.00 2.39
233 241 5.895636 TTCATTCATTTTGCTCCGTATGT 57.104 34.783 0.00 0.00 0.00 2.29
234 242 6.993786 TTCATTCATTTTGCTCCGTATGTA 57.006 33.333 0.00 0.00 0.00 2.29
235 243 6.603237 TCATTCATTTTGCTCCGTATGTAG 57.397 37.500 0.00 0.00 0.00 2.74
236 244 6.112734 TCATTCATTTTGCTCCGTATGTAGT 58.887 36.000 0.00 0.00 0.00 2.73
237 245 6.257849 TCATTCATTTTGCTCCGTATGTAGTC 59.742 38.462 0.00 0.00 0.00 2.59
238 246 4.439057 TCATTTTGCTCCGTATGTAGTCC 58.561 43.478 0.00 0.00 0.00 3.85
239 247 3.965379 TTTTGCTCCGTATGTAGTCCA 57.035 42.857 0.00 0.00 0.00 4.02
240 248 2.953466 TTGCTCCGTATGTAGTCCAC 57.047 50.000 0.00 0.00 0.00 4.02
241 249 1.108776 TGCTCCGTATGTAGTCCACC 58.891 55.000 0.00 0.00 0.00 4.61
242 250 0.388294 GCTCCGTATGTAGTCCACCC 59.612 60.000 0.00 0.00 0.00 4.61
243 251 1.771565 CTCCGTATGTAGTCCACCCA 58.228 55.000 0.00 0.00 0.00 4.51
244 252 1.681793 CTCCGTATGTAGTCCACCCAG 59.318 57.143 0.00 0.00 0.00 4.45
245 253 1.006281 TCCGTATGTAGTCCACCCAGT 59.994 52.381 0.00 0.00 0.00 4.00
246 254 1.136305 CCGTATGTAGTCCACCCAGTG 59.864 57.143 0.00 0.00 0.00 3.66
247 255 2.097036 CGTATGTAGTCCACCCAGTGA 58.903 52.381 0.00 0.00 35.23 3.41
248 256 2.494471 CGTATGTAGTCCACCCAGTGAA 59.506 50.000 0.00 0.00 35.23 3.18
249 257 3.056393 CGTATGTAGTCCACCCAGTGAAA 60.056 47.826 0.00 0.00 35.23 2.69
250 258 4.382685 CGTATGTAGTCCACCCAGTGAAAT 60.383 45.833 0.00 0.00 35.23 2.17
251 259 3.695830 TGTAGTCCACCCAGTGAAATC 57.304 47.619 0.00 0.00 35.23 2.17
252 260 3.248024 TGTAGTCCACCCAGTGAAATCT 58.752 45.455 0.00 0.00 35.23 2.40
253 261 3.260884 TGTAGTCCACCCAGTGAAATCTC 59.739 47.826 0.00 0.00 35.23 2.75
254 262 2.625639 AGTCCACCCAGTGAAATCTCT 58.374 47.619 0.00 0.00 35.23 3.10
255 263 3.791320 AGTCCACCCAGTGAAATCTCTA 58.209 45.455 0.00 0.00 35.23 2.43
256 264 3.515901 AGTCCACCCAGTGAAATCTCTAC 59.484 47.826 0.00 0.00 35.23 2.59
257 265 3.260884 GTCCACCCAGTGAAATCTCTACA 59.739 47.826 0.00 0.00 35.23 2.74
258 266 3.907474 TCCACCCAGTGAAATCTCTACAA 59.093 43.478 0.00 0.00 35.23 2.41
259 267 4.349636 TCCACCCAGTGAAATCTCTACAAA 59.650 41.667 0.00 0.00 35.23 2.83
260 268 4.697352 CCACCCAGTGAAATCTCTACAAAG 59.303 45.833 0.00 0.00 35.23 2.77
261 269 5.513094 CCACCCAGTGAAATCTCTACAAAGA 60.513 44.000 0.00 0.00 35.23 2.52
262 270 5.409826 CACCCAGTGAAATCTCTACAAAGAC 59.590 44.000 0.00 0.00 35.23 3.01
263 271 5.308237 ACCCAGTGAAATCTCTACAAAGACT 59.692 40.000 0.00 0.00 0.00 3.24
264 272 6.183361 ACCCAGTGAAATCTCTACAAAGACTT 60.183 38.462 0.00 0.00 0.00 3.01
265 273 7.016268 ACCCAGTGAAATCTCTACAAAGACTTA 59.984 37.037 0.00 0.00 0.00 2.24
266 274 7.332182 CCCAGTGAAATCTCTACAAAGACTTAC 59.668 40.741 0.00 0.00 0.00 2.34
267 275 7.872993 CCAGTGAAATCTCTACAAAGACTTACA 59.127 37.037 0.00 0.00 0.00 2.41
268 276 9.429359 CAGTGAAATCTCTACAAAGACTTACAT 57.571 33.333 0.00 0.00 0.00 2.29
274 282 9.793259 AATCTCTACAAAGACTTACATTTTGGA 57.207 29.630 0.00 0.00 36.41 3.53
275 283 9.793259 ATCTCTACAAAGACTTACATTTTGGAA 57.207 29.630 0.00 0.00 36.41 3.53
276 284 9.052759 TCTCTACAAAGACTTACATTTTGGAAC 57.947 33.333 0.00 0.00 36.41 3.62
277 285 7.857569 TCTACAAAGACTTACATTTTGGAACG 58.142 34.615 0.00 0.00 36.41 3.95
278 286 5.827666 ACAAAGACTTACATTTTGGAACGG 58.172 37.500 0.00 0.00 36.41 4.44
279 287 5.591067 ACAAAGACTTACATTTTGGAACGGA 59.409 36.000 0.00 0.00 36.41 4.69
280 288 5.941948 AAGACTTACATTTTGGAACGGAG 57.058 39.130 0.00 0.00 0.00 4.63
281 289 4.324267 AGACTTACATTTTGGAACGGAGG 58.676 43.478 0.00 0.00 0.00 4.30
282 290 3.418047 ACTTACATTTTGGAACGGAGGG 58.582 45.455 0.00 0.00 0.00 4.30
283 291 3.073356 ACTTACATTTTGGAACGGAGGGA 59.927 43.478 0.00 0.00 0.00 4.20
284 292 2.200373 ACATTTTGGAACGGAGGGAG 57.800 50.000 0.00 0.00 0.00 4.30
285 293 1.423921 ACATTTTGGAACGGAGGGAGT 59.576 47.619 0.00 0.00 0.00 3.85
286 294 2.640826 ACATTTTGGAACGGAGGGAGTA 59.359 45.455 0.00 0.00 0.00 2.59
287 295 3.265995 ACATTTTGGAACGGAGGGAGTAT 59.734 43.478 0.00 0.00 0.00 2.12
288 296 4.472108 ACATTTTGGAACGGAGGGAGTATA 59.528 41.667 0.00 0.00 0.00 1.47
289 297 5.045432 ACATTTTGGAACGGAGGGAGTATAA 60.045 40.000 0.00 0.00 0.00 0.98
290 298 4.748277 TTTGGAACGGAGGGAGTATAAG 57.252 45.455 0.00 0.00 0.00 1.73
291 299 3.675348 TGGAACGGAGGGAGTATAAGA 57.325 47.619 0.00 0.00 0.00 2.10
292 300 3.563223 TGGAACGGAGGGAGTATAAGAG 58.437 50.000 0.00 0.00 0.00 2.85
293 301 3.053095 TGGAACGGAGGGAGTATAAGAGT 60.053 47.826 0.00 0.00 0.00 3.24
294 302 3.318557 GGAACGGAGGGAGTATAAGAGTG 59.681 52.174 0.00 0.00 0.00 3.51
295 303 3.666345 ACGGAGGGAGTATAAGAGTGT 57.334 47.619 0.00 0.00 0.00 3.55
296 304 3.978610 ACGGAGGGAGTATAAGAGTGTT 58.021 45.455 0.00 0.00 0.00 3.32
297 305 4.351127 ACGGAGGGAGTATAAGAGTGTTT 58.649 43.478 0.00 0.00 0.00 2.83
298 306 5.513233 ACGGAGGGAGTATAAGAGTGTTTA 58.487 41.667 0.00 0.00 0.00 2.01
334 349 7.453838 GTGTGGTTCTAACACGAGAAATTATC 58.546 38.462 0.00 0.00 41.64 1.75
345 360 9.495572 AACACGAGAAATTATCTTTCTTCTTCT 57.504 29.630 2.08 0.00 38.96 2.85
346 361 9.495572 ACACGAGAAATTATCTTTCTTCTTCTT 57.504 29.630 2.08 0.00 38.96 2.52
362 377 8.466086 TCTTCTTCTTTCTTCTTTTTGTTTGC 57.534 30.769 0.00 0.00 0.00 3.68
363 378 6.869421 TCTTCTTTCTTCTTTTTGTTTGCG 57.131 33.333 0.00 0.00 0.00 4.85
364 379 6.616947 TCTTCTTTCTTCTTTTTGTTTGCGA 58.383 32.000 0.00 0.00 0.00 5.10
365 380 7.087639 TCTTCTTTCTTCTTTTTGTTTGCGAA 58.912 30.769 0.00 0.00 0.00 4.70
366 381 7.596995 TCTTCTTTCTTCTTTTTGTTTGCGAAA 59.403 29.630 0.00 0.00 0.00 3.46
367 382 7.276953 TCTTTCTTCTTTTTGTTTGCGAAAG 57.723 32.000 0.00 0.00 38.13 2.62
368 383 7.087639 TCTTTCTTCTTTTTGTTTGCGAAAGA 58.912 30.769 0.00 0.00 41.32 2.52
369 384 6.869421 TTCTTCTTTTTGTTTGCGAAAGAG 57.131 33.333 0.00 0.00 39.67 2.85
370 385 6.189677 TCTTCTTTTTGTTTGCGAAAGAGA 57.810 33.333 0.00 0.00 39.67 3.10
371 386 6.616947 TCTTCTTTTTGTTTGCGAAAGAGAA 58.383 32.000 0.00 0.00 39.67 2.87
372 387 7.087639 TCTTCTTTTTGTTTGCGAAAGAGAAA 58.912 30.769 0.00 0.00 39.67 2.52
373 388 6.626199 TCTTTTTGTTTGCGAAAGAGAAAC 57.374 33.333 0.00 0.00 35.22 2.78
374 389 6.386654 TCTTTTTGTTTGCGAAAGAGAAACT 58.613 32.000 0.00 0.00 35.22 2.66
375 390 7.531716 TCTTTTTGTTTGCGAAAGAGAAACTA 58.468 30.769 0.00 0.00 35.22 2.24
376 391 8.188139 TCTTTTTGTTTGCGAAAGAGAAACTAT 58.812 29.630 0.00 0.00 35.22 2.12
377 392 7.908193 TTTTGTTTGCGAAAGAGAAACTATC 57.092 32.000 0.00 0.00 36.50 2.08
378 393 6.861065 TTGTTTGCGAAAGAGAAACTATCT 57.139 33.333 0.00 0.00 42.61 1.98
379 394 6.861065 TGTTTGCGAAAGAGAAACTATCTT 57.139 33.333 0.00 0.00 38.96 2.40
380 395 7.259290 TGTTTGCGAAAGAGAAACTATCTTT 57.741 32.000 0.79 0.79 46.89 2.52
414 429 2.093447 GGGTGTGGATGAAGGTCTACAG 60.093 54.545 0.00 0.00 39.76 2.74
442 457 3.152341 ACTCTGGTTTTGCAGGAGATTG 58.848 45.455 0.00 0.00 0.00 2.67
443 458 3.152341 CTCTGGTTTTGCAGGAGATTGT 58.848 45.455 0.00 0.00 0.00 2.71
444 459 4.202461 ACTCTGGTTTTGCAGGAGATTGTA 60.202 41.667 0.00 0.00 0.00 2.41
445 460 4.072131 TCTGGTTTTGCAGGAGATTGTAC 58.928 43.478 0.00 0.00 0.00 2.90
446 461 2.811431 TGGTTTTGCAGGAGATTGTACG 59.189 45.455 0.00 0.00 0.00 3.67
447 462 2.414161 GGTTTTGCAGGAGATTGTACGC 60.414 50.000 0.00 0.00 0.00 4.42
448 463 1.448985 TTTGCAGGAGATTGTACGCC 58.551 50.000 0.00 0.00 0.00 5.68
449 464 0.613260 TTGCAGGAGATTGTACGCCT 59.387 50.000 0.00 0.00 40.49 5.52
452 467 3.300032 AGGAGATTGTACGCCTGGA 57.700 52.632 0.00 0.00 38.55 3.86
453 468 1.115467 AGGAGATTGTACGCCTGGAG 58.885 55.000 0.00 0.00 38.55 3.86
458 473 0.537188 ATTGTACGCCTGGAGTGGAG 59.463 55.000 13.68 0.00 0.00 3.86
459 474 0.830444 TTGTACGCCTGGAGTGGAGT 60.830 55.000 13.68 0.00 42.57 3.85
474 489 1.566298 GGAGTCTTGGAGGCCATGGT 61.566 60.000 14.67 0.00 31.53 3.55
475 490 1.204146 GAGTCTTGGAGGCCATGGTA 58.796 55.000 14.67 0.00 31.53 3.25
489 510 0.914644 ATGGTATGGCACTGTGAGCT 59.085 50.000 12.86 0.00 0.00 4.09
528 549 6.533730 CAAAAGATATGGTAGATGGCCTGTA 58.466 40.000 3.32 0.00 0.00 2.74
552 578 3.375299 CGACTAGGCATTTTCCTTTGAGG 59.625 47.826 0.00 0.00 37.66 3.86
570 596 4.346730 TGAGGAAAAAGATGGTCATGCAT 58.653 39.130 0.00 0.00 0.00 3.96
595 623 4.637276 TGTGAGACACCGTTGTGAATAAT 58.363 39.130 0.00 0.00 45.76 1.28
596 624 5.060506 TGTGAGACACCGTTGTGAATAATT 58.939 37.500 0.00 0.00 45.76 1.40
598 626 5.049680 GTGAGACACCGTTGTGAATAATTGT 60.050 40.000 0.00 0.00 45.76 2.71
635 663 7.642669 TCTAGAATTTGCTTTGACTGAAACAG 58.357 34.615 0.00 0.00 37.52 3.16
655 683 5.385198 ACAGAACACAATCCCAGTTTACAT 58.615 37.500 0.00 0.00 0.00 2.29
706 734 5.181690 TCAACCTCTTTGGATTTTTCACG 57.818 39.130 0.00 0.00 39.71 4.35
713 741 4.808364 TCTTTGGATTTTTCACGGCAAAAG 59.192 37.500 0.00 0.00 0.00 2.27
842 1241 5.105187 TCCATGATCAGTTCGTCTCTTGATT 60.105 40.000 0.09 0.00 0.00 2.57
854 1253 7.525688 TCGTCTCTTGATTGACATGAAATAC 57.474 36.000 0.00 0.00 33.39 1.89
860 1259 9.338291 CTCTTGATTGACATGAAATACTTTGTG 57.662 33.333 0.00 0.00 33.39 3.33
905 1304 7.415653 CCATCAAAGTAGAAGGGTAAAAGATGC 60.416 40.741 0.00 0.00 0.00 3.91
909 1308 6.869206 AGTAGAAGGGTAAAAGATGCTGTA 57.131 37.500 0.00 0.00 0.00 2.74
955 1354 9.086336 ACAACAAGTTTACAACATTGATTCTTG 57.914 29.630 0.00 9.35 35.20 3.02
961 1360 8.090214 AGTTTACAACATTGATTCTTGATTGGG 58.910 33.333 0.00 0.00 0.00 4.12
964 1363 5.776716 ACAACATTGATTCTTGATTGGGACT 59.223 36.000 0.00 0.00 0.00 3.85
965 1364 6.947733 ACAACATTGATTCTTGATTGGGACTA 59.052 34.615 0.00 0.00 0.00 2.59
966 1365 7.616935 ACAACATTGATTCTTGATTGGGACTAT 59.383 33.333 0.00 0.00 0.00 2.12
967 1366 9.123902 CAACATTGATTCTTGATTGGGACTATA 57.876 33.333 0.00 0.00 0.00 1.31
981 1677 8.686739 ATTGGGACTATATAGCACTCCTATTT 57.313 34.615 9.78 0.00 37.84 1.40
1013 1716 2.427232 TTGTCCAAGGAACGTACGAG 57.573 50.000 24.41 4.12 0.00 4.18
1014 1717 0.599558 TGTCCAAGGAACGTACGAGG 59.400 55.000 24.41 12.84 0.00 4.63
1015 1718 0.883833 GTCCAAGGAACGTACGAGGA 59.116 55.000 24.41 14.83 0.00 3.71
1016 1719 0.883833 TCCAAGGAACGTACGAGGAC 59.116 55.000 24.41 8.98 0.00 3.85
1056 1759 7.542477 TGAGAAAGAAGTCGATAAACATCTGTC 59.458 37.037 0.00 0.00 33.39 3.51
1059 1762 7.588143 AAGAAGTCGATAAACATCTGTCTTG 57.412 36.000 0.00 0.00 28.35 3.02
1129 1836 2.476185 GCACGCACGCAAATTCTAGATT 60.476 45.455 0.00 0.00 0.00 2.40
1130 1837 3.242284 GCACGCACGCAAATTCTAGATTA 60.242 43.478 0.00 0.00 0.00 1.75
1131 1838 4.552767 GCACGCACGCAAATTCTAGATTAT 60.553 41.667 0.00 0.00 0.00 1.28
1195 1902 0.591741 GGATCATGTCGACGTCGGAC 60.592 60.000 35.05 28.73 40.29 4.79
1292 1999 4.410400 GCTCCCACCTGTTCCGGG 62.410 72.222 0.00 0.00 41.76 5.73
1325 2032 4.681978 AGGTCAAGGCGACGGTGC 62.682 66.667 0.00 0.00 46.42 5.01
1408 2115 1.805945 CTACCCGAACAGCTGCGTC 60.806 63.158 15.27 10.84 0.00 5.19
1481 2188 1.374252 CCCCACTTTCTCCGACGTG 60.374 63.158 0.00 0.00 0.00 4.49
1483 2190 1.366366 CCACTTTCTCCGACGTGGT 59.634 57.895 0.00 0.00 41.46 4.16
1532 2242 1.421485 GCGTCCATCAAGTTCAGCG 59.579 57.895 0.00 0.00 0.00 5.18
1614 2324 4.436998 CGACGACTGGGGCTGGAC 62.437 72.222 0.00 0.00 0.00 4.02
1937 2647 3.743091 GACCTCTCGCTCGCCTTCG 62.743 68.421 0.00 0.00 0.00 3.79
2117 2827 3.788766 CGGCGCACAGGTACAAGC 61.789 66.667 10.83 0.00 0.00 4.01
2254 2964 3.853671 CGTGCATGCAGTTTATTTCTTCC 59.146 43.478 23.41 3.12 0.00 3.46
2405 3115 3.802685 CGTGCCATTTACTACCTTCTAGC 59.197 47.826 0.00 0.00 0.00 3.42
2413 3123 9.574516 CCATTTACTACCTTCTAGCCATTTAAT 57.425 33.333 0.00 0.00 0.00 1.40
2417 3127 7.334844 ACTACCTTCTAGCCATTTAATTTGC 57.665 36.000 0.00 0.00 0.00 3.68
2419 3129 6.456795 ACCTTCTAGCCATTTAATTTGCTC 57.543 37.500 2.52 0.00 35.34 4.26
2420 3130 6.190587 ACCTTCTAGCCATTTAATTTGCTCT 58.809 36.000 2.52 0.00 35.34 4.09
2421 3131 6.665248 ACCTTCTAGCCATTTAATTTGCTCTT 59.335 34.615 2.52 0.00 35.34 2.85
2488 3207 2.034558 GCTAATACCCGTGCATTGCAAT 59.965 45.455 13.94 5.99 41.47 3.56
2492 3211 2.509786 CCGTGCATTGCAATGGGC 60.510 61.111 34.23 24.04 41.47 5.36
2509 3228 6.090763 GCAATGGGCACAACTTTATTTTAGTC 59.909 38.462 0.00 0.00 43.97 2.59
2511 3230 4.163552 GGGCACAACTTTATTTTAGTCGC 58.836 43.478 0.00 0.00 0.00 5.19
2524 3243 8.997621 TTATTTTAGTCGCTCAGTGTAGAATT 57.002 30.769 0.00 0.00 0.00 2.17
2525 3244 7.907214 ATTTTAGTCGCTCAGTGTAGAATTT 57.093 32.000 0.00 0.00 0.00 1.82
2526 3245 7.724305 TTTTAGTCGCTCAGTGTAGAATTTT 57.276 32.000 0.00 0.00 0.00 1.82
2527 3246 7.724305 TTTAGTCGCTCAGTGTAGAATTTTT 57.276 32.000 0.00 0.00 0.00 1.94
2558 3281 6.566079 TGACTGGGTTGAGATTGAGATATT 57.434 37.500 0.00 0.00 0.00 1.28
2570 3293 6.060788 AGATTGAGATATTTTGTCAGGAGGC 58.939 40.000 0.00 0.00 0.00 4.70
2573 3296 5.188434 TGAGATATTTTGTCAGGAGGCAAG 58.812 41.667 0.00 0.00 0.00 4.01
2591 3323 7.201741 GGAGGCAAGAGGTAAAAAGATATGTTC 60.202 40.741 0.00 0.00 0.00 3.18
2610 3356 7.823745 ATGTTCCTGAGATTTGTGTACTTTT 57.176 32.000 0.00 0.00 0.00 2.27
2611 3357 8.918202 ATGTTCCTGAGATTTGTGTACTTTTA 57.082 30.769 0.00 0.00 0.00 1.52
2638 3384 7.935338 AGTGAGTTGATTTTGTATTTTGCTG 57.065 32.000 0.00 0.00 0.00 4.41
2639 3385 6.421801 AGTGAGTTGATTTTGTATTTTGCTGC 59.578 34.615 0.00 0.00 0.00 5.25
2657 3407 3.703420 CTGCAGATTTCTTGCTATTGGC 58.297 45.455 8.42 0.00 42.22 4.52
2718 3801 0.324738 TTCTCCAGAGCCGAGGTGAT 60.325 55.000 0.00 0.00 0.00 3.06
2722 3805 1.599047 CAGAGCCGAGGTGATGGTT 59.401 57.895 0.00 0.00 0.00 3.67
2723 3806 0.824109 CAGAGCCGAGGTGATGGTTA 59.176 55.000 0.00 0.00 0.00 2.85
2738 3826 7.561356 AGGTGATGGTTAGAAAAATAGGGATTG 59.439 37.037 0.00 0.00 0.00 2.67
2743 3831 6.661805 TGGTTAGAAAAATAGGGATTGTCACC 59.338 38.462 0.00 0.00 0.00 4.02
2744 3832 6.890268 GGTTAGAAAAATAGGGATTGTCACCT 59.110 38.462 0.00 0.00 40.89 4.00
2746 3834 5.264395 AGAAAAATAGGGATTGTCACCTGG 58.736 41.667 0.00 0.00 37.72 4.45
2749 3837 4.675063 AATAGGGATTGTCACCTGGTTT 57.325 40.909 0.00 0.00 37.72 3.27
2792 5032 5.158141 TGAAGGAGCATATATGGAAGAGGT 58.842 41.667 14.51 0.00 0.00 3.85
2801 5041 6.016777 GCATATATGGAAGAGGTGGAAACAAG 60.017 42.308 14.51 0.00 46.06 3.16
2813 5053 5.659079 AGGTGGAAACAAGACCAACAAATTA 59.341 36.000 0.00 0.00 45.28 1.40
2815 5055 6.334202 GTGGAAACAAGACCAACAAATTACA 58.666 36.000 0.00 0.00 46.06 2.41
2816 5056 6.814146 GTGGAAACAAGACCAACAAATTACAA 59.186 34.615 0.00 0.00 46.06 2.41
2818 5058 7.493971 TGGAAACAAGACCAACAAATTACAATG 59.506 33.333 0.00 0.00 37.44 2.82
2820 5060 8.419076 AAACAAGACCAACAAATTACAATGTC 57.581 30.769 0.00 0.00 0.00 3.06
2821 5061 6.205784 ACAAGACCAACAAATTACAATGTCG 58.794 36.000 0.00 0.00 0.00 4.35
2823 5063 5.757886 AGACCAACAAATTACAATGTCGTG 58.242 37.500 0.00 0.00 0.00 4.35
2824 5064 5.298276 AGACCAACAAATTACAATGTCGTGT 59.702 36.000 0.00 0.00 35.43 4.49
2827 5067 7.481642 ACCAACAAATTACAATGTCGTGTTAA 58.518 30.769 0.00 0.00 32.75 2.01
2829 5069 8.808529 CCAACAAATTACAATGTCGTGTTAAAA 58.191 29.630 0.00 0.00 32.75 1.52
3060 5418 2.629137 TCAACAAAAGCACATGCATCCT 59.371 40.909 6.64 0.00 45.16 3.24
3075 5433 4.277476 TGCATCCTAAATTTGGAACCGAT 58.723 39.130 2.65 0.00 37.13 4.18
3089 5447 7.938140 TTGGAACCGATCAATTTCTTTAGAT 57.062 32.000 0.00 0.00 0.00 1.98
3090 5448 9.456147 TTTGGAACCGATCAATTTCTTTAGATA 57.544 29.630 0.00 0.00 0.00 1.98
3110 5468 7.964604 AGATATAATTAAACCGCCTTCTGAC 57.035 36.000 0.00 0.00 0.00 3.51
3121 5480 2.033299 CGCCTTCTGACACACACAAAAT 59.967 45.455 0.00 0.00 0.00 1.82
3192 5558 3.672241 GCCGATGAACAACAAATACCACC 60.672 47.826 0.00 0.00 0.00 4.61
3221 5597 4.201970 ACCAGTTCAACAATGTTACAACGG 60.202 41.667 18.21 18.21 0.00 4.44
3335 5722 2.745884 CATCAACGCGCCCTCCAA 60.746 61.111 5.73 0.00 0.00 3.53
3475 5884 4.161377 GCTACATCTCTCCCTTCTCTGTTT 59.839 45.833 0.00 0.00 0.00 2.83
3676 6085 1.549203 GGCTGATGTTTCATGGGTGT 58.451 50.000 0.00 0.00 0.00 4.16
3743 6152 2.027745 TCATCTTCTCTTGGACAGTGGC 60.028 50.000 0.00 0.00 0.00 5.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.018856 TGCAAACCATCAGAATGCTAGG 58.981 45.455 0.00 0.00 37.86 3.02
1 2 3.066342 CCTGCAAACCATCAGAATGCTAG 59.934 47.826 0.00 0.00 37.86 3.42
25 26 8.298854 CAAAATCTGTGATGTACAATCTTTCCA 58.701 33.333 0.00 0.00 39.20 3.53
32 33 6.009589 TGGACCAAAATCTGTGATGTACAAT 58.990 36.000 0.00 0.00 39.20 2.71
38 39 6.028146 TGAATTGGACCAAAATCTGTGATG 57.972 37.500 11.82 0.00 0.00 3.07
39 40 5.186409 CCTGAATTGGACCAAAATCTGTGAT 59.814 40.000 11.82 0.00 0.00 3.06
40 41 4.523943 CCTGAATTGGACCAAAATCTGTGA 59.476 41.667 11.82 0.00 0.00 3.58
42 43 3.259123 GCCTGAATTGGACCAAAATCTGT 59.741 43.478 11.82 0.00 0.00 3.41
43 44 3.512724 AGCCTGAATTGGACCAAAATCTG 59.487 43.478 11.82 15.11 0.00 2.90
45 46 4.248058 CAAGCCTGAATTGGACCAAAATC 58.752 43.478 11.82 13.02 0.00 2.17
128 136 9.289782 CAAAGACTTATATTTAGGAATGGAGGG 57.710 37.037 0.00 0.00 0.00 4.30
129 137 9.853177 ACAAAGACTTATATTTAGGAATGGAGG 57.147 33.333 0.00 0.00 0.00 4.30
145 153 9.475620 TCATAGTGGAATCTCTACAAAGACTTA 57.524 33.333 0.00 0.00 29.47 2.24
146 154 8.367660 TCATAGTGGAATCTCTACAAAGACTT 57.632 34.615 0.00 0.00 29.47 3.01
148 156 8.254508 AGTTCATAGTGGAATCTCTACAAAGAC 58.745 37.037 0.00 0.00 29.47 3.01
149 157 8.367660 AGTTCATAGTGGAATCTCTACAAAGA 57.632 34.615 0.00 0.00 29.47 2.52
150 158 9.522804 GTAGTTCATAGTGGAATCTCTACAAAG 57.477 37.037 0.00 0.00 30.38 2.77
151 159 9.031537 TGTAGTTCATAGTGGAATCTCTACAAA 57.968 33.333 0.00 0.00 34.07 2.83
153 161 8.768501 ATGTAGTTCATAGTGGAATCTCTACA 57.231 34.615 0.00 0.00 37.82 2.74
155 163 9.000486 CGTATGTAGTTCATAGTGGAATCTCTA 58.000 37.037 0.00 0.00 39.36 2.43
157 165 7.040617 TCCGTATGTAGTTCATAGTGGAATCTC 60.041 40.741 7.73 0.00 39.60 2.75
158 166 6.776116 TCCGTATGTAGTTCATAGTGGAATCT 59.224 38.462 7.73 0.00 39.60 2.40
160 168 6.971726 TCCGTATGTAGTTCATAGTGGAAT 57.028 37.500 7.73 0.00 39.60 3.01
161 169 6.322969 ACATCCGTATGTAGTTCATAGTGGAA 59.677 38.462 12.08 0.00 44.66 3.53
162 170 5.831525 ACATCCGTATGTAGTTCATAGTGGA 59.168 40.000 11.01 11.01 44.66 4.02
163 171 6.085555 ACATCCGTATGTAGTTCATAGTGG 57.914 41.667 0.00 2.99 44.66 4.00
179 187 9.944376 ACTTAAAATGCATCTATATACATCCGT 57.056 29.630 0.00 0.00 0.00 4.69
188 196 9.625747 TGAATCCACACTTAAAATGCATCTATA 57.374 29.630 0.00 0.00 0.00 1.31
189 197 8.523915 TGAATCCACACTTAAAATGCATCTAT 57.476 30.769 0.00 0.00 0.00 1.98
190 198 7.936496 TGAATCCACACTTAAAATGCATCTA 57.064 32.000 0.00 0.00 0.00 1.98
191 199 6.839124 TGAATCCACACTTAAAATGCATCT 57.161 33.333 0.00 0.00 0.00 2.90
192 200 7.760794 TGAATGAATCCACACTTAAAATGCATC 59.239 33.333 0.00 0.00 0.00 3.91
193 201 7.613585 TGAATGAATCCACACTTAAAATGCAT 58.386 30.769 0.00 0.00 0.00 3.96
194 202 6.990798 TGAATGAATCCACACTTAAAATGCA 58.009 32.000 0.00 0.00 0.00 3.96
195 203 8.483307 AATGAATGAATCCACACTTAAAATGC 57.517 30.769 0.00 0.00 0.00 3.56
198 206 8.772705 GCAAAATGAATGAATCCACACTTAAAA 58.227 29.630 0.00 0.00 0.00 1.52
199 207 8.149647 AGCAAAATGAATGAATCCACACTTAAA 58.850 29.630 0.00 0.00 0.00 1.52
200 208 7.669427 AGCAAAATGAATGAATCCACACTTAA 58.331 30.769 0.00 0.00 0.00 1.85
201 209 7.230849 AGCAAAATGAATGAATCCACACTTA 57.769 32.000 0.00 0.00 0.00 2.24
202 210 6.105397 AGCAAAATGAATGAATCCACACTT 57.895 33.333 0.00 0.00 0.00 3.16
203 211 5.337009 GGAGCAAAATGAATGAATCCACACT 60.337 40.000 0.00 0.00 0.00 3.55
204 212 4.866486 GGAGCAAAATGAATGAATCCACAC 59.134 41.667 0.00 0.00 0.00 3.82
205 213 4.380761 CGGAGCAAAATGAATGAATCCACA 60.381 41.667 0.00 0.00 0.00 4.17
206 214 4.107622 CGGAGCAAAATGAATGAATCCAC 58.892 43.478 0.00 0.00 0.00 4.02
207 215 3.763360 ACGGAGCAAAATGAATGAATCCA 59.237 39.130 0.00 0.00 0.00 3.41
208 216 4.376340 ACGGAGCAAAATGAATGAATCC 57.624 40.909 0.00 0.00 0.00 3.01
209 217 6.498304 ACATACGGAGCAAAATGAATGAATC 58.502 36.000 0.00 0.00 0.00 2.52
210 218 6.455360 ACATACGGAGCAAAATGAATGAAT 57.545 33.333 0.00 0.00 0.00 2.57
211 219 5.895636 ACATACGGAGCAAAATGAATGAA 57.104 34.783 0.00 0.00 0.00 2.57
212 220 6.112734 ACTACATACGGAGCAAAATGAATGA 58.887 36.000 0.00 0.00 0.00 2.57
213 221 6.363577 ACTACATACGGAGCAAAATGAATG 57.636 37.500 0.00 0.00 0.00 2.67
214 222 5.527582 GGACTACATACGGAGCAAAATGAAT 59.472 40.000 0.00 0.00 0.00 2.57
215 223 4.873827 GGACTACATACGGAGCAAAATGAA 59.126 41.667 0.00 0.00 0.00 2.57
216 224 4.081365 TGGACTACATACGGAGCAAAATGA 60.081 41.667 0.00 0.00 0.00 2.57
217 225 4.034048 GTGGACTACATACGGAGCAAAATG 59.966 45.833 0.00 0.00 0.00 2.32
218 226 4.189231 GTGGACTACATACGGAGCAAAAT 58.811 43.478 0.00 0.00 0.00 1.82
219 227 3.592059 GTGGACTACATACGGAGCAAAA 58.408 45.455 0.00 0.00 0.00 2.44
220 228 2.093869 GGTGGACTACATACGGAGCAAA 60.094 50.000 0.00 0.00 0.00 3.68
221 229 1.479323 GGTGGACTACATACGGAGCAA 59.521 52.381 0.00 0.00 0.00 3.91
222 230 1.108776 GGTGGACTACATACGGAGCA 58.891 55.000 0.00 0.00 0.00 4.26
223 231 0.388294 GGGTGGACTACATACGGAGC 59.612 60.000 0.00 0.00 0.00 4.70
224 232 1.681793 CTGGGTGGACTACATACGGAG 59.318 57.143 0.00 0.00 0.00 4.63
225 233 1.006281 ACTGGGTGGACTACATACGGA 59.994 52.381 0.00 0.00 0.00 4.69
226 234 1.136305 CACTGGGTGGACTACATACGG 59.864 57.143 0.00 0.00 0.00 4.02
227 235 2.097036 TCACTGGGTGGACTACATACG 58.903 52.381 0.00 0.00 33.87 3.06
228 236 4.546829 TTTCACTGGGTGGACTACATAC 57.453 45.455 0.00 0.00 33.87 2.39
229 237 5.030147 AGATTTCACTGGGTGGACTACATA 58.970 41.667 0.00 0.00 33.87 2.29
230 238 3.846588 AGATTTCACTGGGTGGACTACAT 59.153 43.478 0.00 0.00 33.87 2.29
231 239 3.248024 AGATTTCACTGGGTGGACTACA 58.752 45.455 0.00 0.00 33.87 2.74
232 240 3.515901 AGAGATTTCACTGGGTGGACTAC 59.484 47.826 0.00 0.00 33.87 2.73
233 241 3.791320 AGAGATTTCACTGGGTGGACTA 58.209 45.455 0.00 0.00 33.87 2.59
234 242 2.625639 AGAGATTTCACTGGGTGGACT 58.374 47.619 0.00 0.00 33.87 3.85
235 243 3.260884 TGTAGAGATTTCACTGGGTGGAC 59.739 47.826 0.00 0.00 33.87 4.02
236 244 3.516586 TGTAGAGATTTCACTGGGTGGA 58.483 45.455 0.00 0.00 33.87 4.02
237 245 3.981071 TGTAGAGATTTCACTGGGTGG 57.019 47.619 0.00 0.00 33.87 4.61
238 246 5.409826 GTCTTTGTAGAGATTTCACTGGGTG 59.590 44.000 0.00 0.00 34.45 4.61
239 247 5.308237 AGTCTTTGTAGAGATTTCACTGGGT 59.692 40.000 0.00 0.00 0.00 4.51
240 248 5.799213 AGTCTTTGTAGAGATTTCACTGGG 58.201 41.667 0.00 0.00 0.00 4.45
241 249 7.872993 TGTAAGTCTTTGTAGAGATTTCACTGG 59.127 37.037 0.00 0.00 29.76 4.00
242 250 8.818141 TGTAAGTCTTTGTAGAGATTTCACTG 57.182 34.615 0.00 0.00 29.76 3.66
248 256 9.793259 TCCAAAATGTAAGTCTTTGTAGAGATT 57.207 29.630 0.00 0.00 0.00 2.40
249 257 9.793259 TTCCAAAATGTAAGTCTTTGTAGAGAT 57.207 29.630 0.00 0.00 0.00 2.75
250 258 9.052759 GTTCCAAAATGTAAGTCTTTGTAGAGA 57.947 33.333 0.00 0.00 0.00 3.10
251 259 8.009974 CGTTCCAAAATGTAAGTCTTTGTAGAG 58.990 37.037 0.00 0.00 0.00 2.43
252 260 7.041644 CCGTTCCAAAATGTAAGTCTTTGTAGA 60.042 37.037 0.00 0.00 0.00 2.59
253 261 7.041644 TCCGTTCCAAAATGTAAGTCTTTGTAG 60.042 37.037 0.00 0.00 0.00 2.74
254 262 6.766944 TCCGTTCCAAAATGTAAGTCTTTGTA 59.233 34.615 0.00 0.00 0.00 2.41
255 263 5.591067 TCCGTTCCAAAATGTAAGTCTTTGT 59.409 36.000 0.00 0.00 0.00 2.83
256 264 6.067263 TCCGTTCCAAAATGTAAGTCTTTG 57.933 37.500 0.00 0.00 0.00 2.77
257 265 5.240844 CCTCCGTTCCAAAATGTAAGTCTTT 59.759 40.000 0.00 0.00 0.00 2.52
258 266 4.760204 CCTCCGTTCCAAAATGTAAGTCTT 59.240 41.667 0.00 0.00 0.00 3.01
259 267 4.324267 CCTCCGTTCCAAAATGTAAGTCT 58.676 43.478 0.00 0.00 0.00 3.24
260 268 3.439129 CCCTCCGTTCCAAAATGTAAGTC 59.561 47.826 0.00 0.00 0.00 3.01
261 269 3.073356 TCCCTCCGTTCCAAAATGTAAGT 59.927 43.478 0.00 0.00 0.00 2.24
262 270 3.681593 TCCCTCCGTTCCAAAATGTAAG 58.318 45.455 0.00 0.00 0.00 2.34
263 271 3.073356 ACTCCCTCCGTTCCAAAATGTAA 59.927 43.478 0.00 0.00 0.00 2.41
264 272 2.640826 ACTCCCTCCGTTCCAAAATGTA 59.359 45.455 0.00 0.00 0.00 2.29
265 273 1.423921 ACTCCCTCCGTTCCAAAATGT 59.576 47.619 0.00 0.00 0.00 2.71
266 274 2.200373 ACTCCCTCCGTTCCAAAATG 57.800 50.000 0.00 0.00 0.00 2.32
267 275 5.427481 TCTTATACTCCCTCCGTTCCAAAAT 59.573 40.000 0.00 0.00 0.00 1.82
268 276 4.778958 TCTTATACTCCCTCCGTTCCAAAA 59.221 41.667 0.00 0.00 0.00 2.44
269 277 4.355549 TCTTATACTCCCTCCGTTCCAAA 58.644 43.478 0.00 0.00 0.00 3.28
270 278 3.958798 CTCTTATACTCCCTCCGTTCCAA 59.041 47.826 0.00 0.00 0.00 3.53
271 279 3.053095 ACTCTTATACTCCCTCCGTTCCA 60.053 47.826 0.00 0.00 0.00 3.53
272 280 3.318557 CACTCTTATACTCCCTCCGTTCC 59.681 52.174 0.00 0.00 0.00 3.62
273 281 3.952967 ACACTCTTATACTCCCTCCGTTC 59.047 47.826 0.00 0.00 0.00 3.95
274 282 3.978610 ACACTCTTATACTCCCTCCGTT 58.021 45.455 0.00 0.00 0.00 4.44
275 283 3.666345 ACACTCTTATACTCCCTCCGT 57.334 47.619 0.00 0.00 0.00 4.69
276 284 5.826737 TCTAAACACTCTTATACTCCCTCCG 59.173 44.000 0.00 0.00 0.00 4.63
277 285 7.726738 AGATCTAAACACTCTTATACTCCCTCC 59.273 40.741 0.00 0.00 0.00 4.30
278 286 8.700439 AGATCTAAACACTCTTATACTCCCTC 57.300 38.462 0.00 0.00 0.00 4.30
279 287 7.446013 CGAGATCTAAACACTCTTATACTCCCT 59.554 40.741 0.00 0.00 0.00 4.20
280 288 7.586747 CGAGATCTAAACACTCTTATACTCCC 58.413 42.308 0.00 0.00 0.00 4.30
281 289 7.079475 GCGAGATCTAAACACTCTTATACTCC 58.921 42.308 0.00 0.00 0.00 3.85
282 290 7.640852 TGCGAGATCTAAACACTCTTATACTC 58.359 38.462 0.00 0.00 0.00 2.59
283 291 7.569639 TGCGAGATCTAAACACTCTTATACT 57.430 36.000 0.00 0.00 0.00 2.12
284 292 7.863375 ACATGCGAGATCTAAACACTCTTATAC 59.137 37.037 0.00 0.00 0.00 1.47
285 293 7.862873 CACATGCGAGATCTAAACACTCTTATA 59.137 37.037 0.00 0.00 0.00 0.98
286 294 6.699204 CACATGCGAGATCTAAACACTCTTAT 59.301 38.462 0.00 0.00 0.00 1.73
287 295 6.036470 CACATGCGAGATCTAAACACTCTTA 58.964 40.000 0.00 0.00 0.00 2.10
288 296 4.867047 CACATGCGAGATCTAAACACTCTT 59.133 41.667 0.00 0.00 0.00 2.85
289 297 4.081972 ACACATGCGAGATCTAAACACTCT 60.082 41.667 0.00 0.00 0.00 3.24
290 298 4.032217 CACACATGCGAGATCTAAACACTC 59.968 45.833 0.00 0.00 0.00 3.51
291 299 3.928992 CACACATGCGAGATCTAAACACT 59.071 43.478 0.00 0.00 0.00 3.55
292 300 3.062639 CCACACATGCGAGATCTAAACAC 59.937 47.826 0.00 0.00 0.00 3.32
293 301 3.261580 CCACACATGCGAGATCTAAACA 58.738 45.455 0.00 0.00 0.00 2.83
294 302 3.262420 ACCACACATGCGAGATCTAAAC 58.738 45.455 0.00 0.00 0.00 2.01
295 303 3.610040 ACCACACATGCGAGATCTAAA 57.390 42.857 0.00 0.00 0.00 1.85
296 304 3.195610 AGAACCACACATGCGAGATCTAA 59.804 43.478 0.00 0.00 0.00 2.10
297 305 2.760650 AGAACCACACATGCGAGATCTA 59.239 45.455 0.00 0.00 0.00 1.98
298 306 1.552337 AGAACCACACATGCGAGATCT 59.448 47.619 0.00 0.00 0.00 2.75
340 355 6.616947 TCGCAAACAAAAAGAAGAAAGAAGA 58.383 32.000 0.00 0.00 0.00 2.87
341 356 6.869421 TCGCAAACAAAAAGAAGAAAGAAG 57.131 33.333 0.00 0.00 0.00 2.85
342 357 7.596995 TCTTTCGCAAACAAAAAGAAGAAAGAA 59.403 29.630 12.89 0.82 44.94 2.52
343 358 7.087639 TCTTTCGCAAACAAAAAGAAGAAAGA 58.912 30.769 11.68 11.68 45.39 2.52
344 359 7.273381 TCTCTTTCGCAAACAAAAAGAAGAAAG 59.727 33.333 7.93 7.93 42.47 2.62
345 360 7.087639 TCTCTTTCGCAAACAAAAAGAAGAAA 58.912 30.769 0.00 0.00 38.25 2.52
346 361 6.616947 TCTCTTTCGCAAACAAAAAGAAGAA 58.383 32.000 0.00 0.00 38.25 2.52
347 362 6.189677 TCTCTTTCGCAAACAAAAAGAAGA 57.810 33.333 0.00 0.00 38.25 2.87
348 363 6.869421 TTCTCTTTCGCAAACAAAAAGAAG 57.131 33.333 0.00 0.00 38.25 2.85
349 364 6.866248 AGTTTCTCTTTCGCAAACAAAAAGAA 59.134 30.769 0.00 0.00 38.25 2.52
350 365 6.386654 AGTTTCTCTTTCGCAAACAAAAAGA 58.613 32.000 0.00 0.00 36.84 2.52
351 366 6.632171 AGTTTCTCTTTCGCAAACAAAAAG 57.368 33.333 0.00 0.00 33.26 2.27
352 367 8.188139 AGATAGTTTCTCTTTCGCAAACAAAAA 58.812 29.630 0.00 0.00 33.26 1.94
353 368 7.703328 AGATAGTTTCTCTTTCGCAAACAAAA 58.297 30.769 0.00 0.00 33.26 2.44
354 369 7.259290 AGATAGTTTCTCTTTCGCAAACAAA 57.741 32.000 0.00 0.00 33.26 2.83
355 370 6.861065 AGATAGTTTCTCTTTCGCAAACAA 57.139 33.333 0.00 0.00 33.26 2.83
356 371 6.861065 AAGATAGTTTCTCTTTCGCAAACA 57.139 33.333 0.00 0.00 33.26 2.83
357 372 7.768220 GAAAGATAGTTTCTCTTTCGCAAAC 57.232 36.000 9.32 0.00 44.97 2.93
374 389 9.480861 CCACACCCTATGATCTATAGAAAGATA 57.519 37.037 6.52 3.08 41.10 1.98
375 390 8.180165 TCCACACCCTATGATCTATAGAAAGAT 58.820 37.037 6.52 2.04 41.10 2.40
376 391 7.535738 TCCACACCCTATGATCTATAGAAAGA 58.464 38.462 6.52 0.00 41.10 2.52
377 392 7.782897 TCCACACCCTATGATCTATAGAAAG 57.217 40.000 6.52 2.61 41.10 2.62
378 393 7.955750 TCATCCACACCCTATGATCTATAGAAA 59.044 37.037 6.52 0.00 41.10 2.52
379 394 7.478721 TCATCCACACCCTATGATCTATAGAA 58.521 38.462 6.52 0.00 41.10 2.10
380 395 7.044496 TCATCCACACCCTATGATCTATAGA 57.956 40.000 4.57 4.57 41.10 1.98
381 396 7.147759 CCTTCATCCACACCCTATGATCTATAG 60.148 44.444 0.00 0.00 38.80 1.31
382 397 6.669591 CCTTCATCCACACCCTATGATCTATA 59.330 42.308 0.00 0.00 30.17 1.31
383 398 5.486775 CCTTCATCCACACCCTATGATCTAT 59.513 44.000 0.00 0.00 30.17 1.98
384 399 4.840680 CCTTCATCCACACCCTATGATCTA 59.159 45.833 0.00 0.00 30.17 1.98
393 408 1.906574 TGTAGACCTTCATCCACACCC 59.093 52.381 0.00 0.00 0.00 4.61
414 429 2.808543 CTGCAAAACCAGAGTCTACCAC 59.191 50.000 0.00 0.00 34.77 4.16
422 437 3.152341 ACAATCTCCTGCAAAACCAGAG 58.848 45.455 0.00 0.00 34.77 3.35
423 438 3.228188 ACAATCTCCTGCAAAACCAGA 57.772 42.857 0.00 0.00 34.77 3.86
442 457 0.966370 AGACTCCACTCCAGGCGTAC 60.966 60.000 0.00 0.00 0.00 3.67
443 458 0.251653 AAGACTCCACTCCAGGCGTA 60.252 55.000 0.00 0.00 0.00 4.42
444 459 1.534235 AAGACTCCACTCCAGGCGT 60.534 57.895 0.00 0.00 0.00 5.68
445 460 1.079543 CAAGACTCCACTCCAGGCG 60.080 63.158 0.00 0.00 0.00 5.52
446 461 1.194781 TCCAAGACTCCACTCCAGGC 61.195 60.000 0.00 0.00 0.00 4.85
447 462 0.901124 CTCCAAGACTCCACTCCAGG 59.099 60.000 0.00 0.00 0.00 4.45
448 463 0.901124 CCTCCAAGACTCCACTCCAG 59.099 60.000 0.00 0.00 0.00 3.86
449 464 1.194781 GCCTCCAAGACTCCACTCCA 61.195 60.000 0.00 0.00 0.00 3.86
450 465 1.599576 GCCTCCAAGACTCCACTCC 59.400 63.158 0.00 0.00 0.00 3.85
451 466 1.194781 TGGCCTCCAAGACTCCACTC 61.195 60.000 3.32 0.00 0.00 3.51
452 467 0.548682 ATGGCCTCCAAGACTCCACT 60.549 55.000 3.32 0.00 36.95 4.00
453 468 0.393537 CATGGCCTCCAAGACTCCAC 60.394 60.000 3.32 0.00 36.95 4.02
458 473 1.477558 CCATACCATGGCCTCCAAGAC 60.478 57.143 13.04 0.00 44.70 3.01
459 474 0.846015 CCATACCATGGCCTCCAAGA 59.154 55.000 13.04 0.00 44.70 3.02
474 489 4.395854 CACATAAAAGCTCACAGTGCCATA 59.604 41.667 0.00 0.00 0.00 2.74
475 490 3.192001 CACATAAAAGCTCACAGTGCCAT 59.808 43.478 0.00 0.00 0.00 4.40
512 533 1.048601 CGGTACAGGCCATCTACCAT 58.951 55.000 18.65 0.00 0.00 3.55
528 549 3.081804 CAAAGGAAAATGCCTAGTCGGT 58.918 45.455 0.00 0.00 37.26 4.69
552 578 7.259882 TCACATTATGCATGACCATCTTTTTC 58.740 34.615 10.16 0.00 36.24 2.29
557 583 5.061853 GTCTCACATTATGCATGACCATCT 58.938 41.667 10.16 0.00 36.24 2.90
563 589 3.197265 CGGTGTCTCACATTATGCATGA 58.803 45.455 10.16 0.00 35.86 3.07
570 596 3.737032 TCACAACGGTGTCTCACATTA 57.263 42.857 1.16 0.00 45.45 1.90
595 623 8.677300 GCAAATTCTAGATTCCTTCATGTACAA 58.323 33.333 0.00 0.00 0.00 2.41
596 624 8.049117 AGCAAATTCTAGATTCCTTCATGTACA 58.951 33.333 0.00 0.00 0.00 2.90
598 626 9.466497 AAAGCAAATTCTAGATTCCTTCATGTA 57.534 29.630 0.00 0.00 0.00 2.29
635 663 6.811253 TGTATGTAAACTGGGATTGTGTTC 57.189 37.500 0.00 0.00 0.00 3.18
655 683 8.177119 ACTGCAAAAGGTCTTCAAAATATGTA 57.823 30.769 0.00 0.00 0.00 2.29
665 693 5.452777 GTTGATGTACTGCAAAAGGTCTTC 58.547 41.667 0.00 0.00 0.00 2.87
676 704 3.674997 TCCAAAGAGGTTGATGTACTGC 58.325 45.455 0.00 0.00 39.87 4.40
739 1134 3.140144 TGAGGGGTGGAAAGAGTTCATTT 59.860 43.478 0.00 0.00 35.25 2.32
740 1135 2.716424 TGAGGGGTGGAAAGAGTTCATT 59.284 45.455 0.00 0.00 35.25 2.57
783 1178 6.642707 AAAATTGACCCTCGAATTTACACA 57.357 33.333 0.00 0.00 32.66 3.72
842 1241 4.148079 TGGGCACAAAGTATTTCATGTCA 58.852 39.130 0.00 0.00 35.03 3.58
860 1259 0.466372 GGTCTCTTAATGGGCTGGGC 60.466 60.000 0.00 0.00 0.00 5.36
948 1347 8.317679 AGTGCTATATAGTCCCAATCAAGAATC 58.682 37.037 11.38 0.00 0.00 2.52
949 1348 8.212259 AGTGCTATATAGTCCCAATCAAGAAT 57.788 34.615 11.38 0.00 0.00 2.40
952 1351 6.212388 AGGAGTGCTATATAGTCCCAATCAAG 59.788 42.308 11.38 0.00 38.22 3.02
953 1352 6.084738 AGGAGTGCTATATAGTCCCAATCAA 58.915 40.000 11.38 0.00 38.22 2.57
954 1353 5.655394 AGGAGTGCTATATAGTCCCAATCA 58.345 41.667 11.38 0.00 38.22 2.57
955 1354 7.906199 ATAGGAGTGCTATATAGTCCCAATC 57.094 40.000 11.38 9.08 38.22 2.67
958 1357 9.784376 AATAAATAGGAGTGCTATATAGTCCCA 57.216 33.333 11.38 0.68 38.22 4.37
1013 1716 0.534203 TCAAGGCTTTGTGTCCGTCC 60.534 55.000 8.56 0.00 35.73 4.79
1014 1717 0.868406 CTCAAGGCTTTGTGTCCGTC 59.132 55.000 8.56 0.00 35.73 4.79
1015 1718 0.468226 TCTCAAGGCTTTGTGTCCGT 59.532 50.000 8.56 0.00 35.73 4.69
1016 1719 1.593196 TTCTCAAGGCTTTGTGTCCG 58.407 50.000 8.56 0.00 35.73 4.79
1017 1720 3.214328 TCTTTCTCAAGGCTTTGTGTCC 58.786 45.455 8.56 0.00 35.73 4.02
1056 1759 4.149571 CGTAGAGAATCCATTCGATGCAAG 59.850 45.833 0.00 0.00 41.56 4.01
1059 1762 3.643763 ACGTAGAGAATCCATTCGATGC 58.356 45.455 0.00 0.00 41.56 3.91
1292 1999 1.445582 CCTCCGTGTAGTTGGCGAC 60.446 63.158 0.00 0.00 0.00 5.19
1342 2049 2.081212 GGTGAACGTGCTCGACTCG 61.081 63.158 16.04 0.00 40.98 4.18
1463 2170 1.374252 CACGTCGGAGAAAGTGGGG 60.374 63.158 0.00 0.00 41.52 4.96
1614 2324 0.526524 GTCGCTCCTCATGAAGTCCG 60.527 60.000 0.00 0.00 0.00 4.79
1795 2505 2.997897 GTGGTGAGCTCCCCGTCT 60.998 66.667 12.15 0.00 0.00 4.18
1904 2614 1.671379 GGTCCTCCTTGAACACGGC 60.671 63.158 0.00 0.00 0.00 5.68
1906 2616 0.969894 AGAGGTCCTCCTTGAACACG 59.030 55.000 15.72 0.00 45.24 4.49
1981 2691 2.680352 ACCTCGGCGTCCATGTCT 60.680 61.111 6.85 0.00 0.00 3.41
2006 2716 2.040178 GTAGATGAACCGGATCAGGGT 58.960 52.381 19.86 9.93 40.20 4.34
2042 2752 1.742880 GCTGCTGCTTCATGTCCGA 60.743 57.895 8.53 0.00 36.03 4.55
2117 2827 2.008329 GATGTGCTTCAGCTTCTCCAG 58.992 52.381 0.00 0.00 42.66 3.86
2218 2928 2.970974 GCACGCCTTCTTCAGCACC 61.971 63.158 0.00 0.00 0.00 5.01
2254 2964 0.674534 CGGCTACTAGGTTAGCAGGG 59.325 60.000 12.86 0.70 40.86 4.45
2365 3075 1.471684 ACGAACGTGGACTGATCTACC 59.528 52.381 0.00 0.00 32.82 3.18
2368 3078 0.388649 GCACGAACGTGGACTGATCT 60.389 55.000 24.71 0.00 45.49 2.75
2458 3168 6.446781 TGCACGGGTATTAGCTATATACTC 57.553 41.667 17.80 15.20 0.00 2.59
2459 3169 7.265673 CAATGCACGGGTATTAGCTATATACT 58.734 38.462 0.00 4.53 0.00 2.12
2460 3170 6.018994 GCAATGCACGGGTATTAGCTATATAC 60.019 42.308 0.00 13.40 0.00 1.47
2462 3172 4.876107 GCAATGCACGGGTATTAGCTATAT 59.124 41.667 0.00 0.00 0.00 0.86
2464 3174 3.074412 GCAATGCACGGGTATTAGCTAT 58.926 45.455 0.00 0.00 0.00 2.97
2468 3178 3.550639 CCATTGCAATGCACGGGTATTAG 60.551 47.826 30.15 10.97 38.71 1.73
2469 3179 2.360483 CCATTGCAATGCACGGGTATTA 59.640 45.455 30.15 0.00 38.71 0.98
2488 3207 4.320641 GCGACTAAAATAAAGTTGTGCCCA 60.321 41.667 0.00 0.00 31.92 5.36
2492 3211 6.792250 CACTGAGCGACTAAAATAAAGTTGTG 59.208 38.462 0.00 0.00 31.92 3.33
2558 3281 1.140312 ACCTCTTGCCTCCTGACAAA 58.860 50.000 0.00 0.00 0.00 2.83
2570 3293 8.792830 TCAGGAACATATCTTTTTACCTCTTG 57.207 34.615 0.00 0.00 0.00 3.02
2573 3296 9.620259 AATCTCAGGAACATATCTTTTTACCTC 57.380 33.333 0.00 0.00 0.00 3.85
2708 3791 2.396590 TTTCTAACCATCACCTCGGC 57.603 50.000 0.00 0.00 0.00 5.54
2718 3801 6.661805 GGTGACAATCCCTATTTTTCTAACCA 59.338 38.462 0.00 0.00 0.00 3.67
2722 3805 6.011981 ACCAGGTGACAATCCCTATTTTTCTA 60.012 38.462 0.00 0.00 0.00 2.10
2723 3806 5.222337 ACCAGGTGACAATCCCTATTTTTCT 60.222 40.000 0.00 0.00 0.00 2.52
2764 3852 9.327628 CTCTTCCATATATGCTCCTTCATATTG 57.672 37.037 7.24 2.15 39.57 1.90
2768 3856 5.789575 ACCTCTTCCATATATGCTCCTTCAT 59.210 40.000 7.24 0.00 0.00 2.57
2769 3857 5.012458 CACCTCTTCCATATATGCTCCTTCA 59.988 44.000 7.24 0.00 0.00 3.02
2770 3858 5.486526 CACCTCTTCCATATATGCTCCTTC 58.513 45.833 7.24 0.00 0.00 3.46
2776 3864 5.376625 TGTTTCCACCTCTTCCATATATGC 58.623 41.667 7.24 0.00 0.00 3.14
2777 3865 7.227512 GTCTTGTTTCCACCTCTTCCATATATG 59.772 40.741 5.68 5.68 0.00 1.78
2778 3866 7.283329 GTCTTGTTTCCACCTCTTCCATATAT 58.717 38.462 0.00 0.00 0.00 0.86
2779 3867 6.352737 GGTCTTGTTTCCACCTCTTCCATATA 60.353 42.308 0.00 0.00 0.00 0.86
2781 3869 4.263331 GGTCTTGTTTCCACCTCTTCCATA 60.263 45.833 0.00 0.00 0.00 2.74
2792 5032 6.531503 TGTAATTTGTTGGTCTTGTTTCCA 57.468 33.333 0.00 0.00 0.00 3.53
2801 5041 5.516090 ACACGACATTGTAATTTGTTGGTC 58.484 37.500 0.00 0.00 32.51 4.02
2827 5067 9.513727 GTTGATTTGGCATTGTAATTTGTTTTT 57.486 25.926 0.00 0.00 0.00 1.94
2829 5069 8.218338 TGTTGATTTGGCATTGTAATTTGTTT 57.782 26.923 0.00 0.00 0.00 2.83
2830 5070 7.798596 TGTTGATTTGGCATTGTAATTTGTT 57.201 28.000 0.00 0.00 0.00 2.83
2832 5072 8.030744 TGATGTTGATTTGGCATTGTAATTTG 57.969 30.769 0.00 0.00 0.00 2.32
2833 5073 8.618702 TTGATGTTGATTTGGCATTGTAATTT 57.381 26.923 0.00 0.00 0.00 1.82
2835 5075 8.670135 CAATTGATGTTGATTTGGCATTGTAAT 58.330 29.630 0.00 0.00 0.00 1.89
3023 5379 7.164008 GCTTTTGTTGACAATAAATTTGTGTGC 59.836 33.333 10.44 5.40 35.55 4.57
3024 5380 8.173775 TGCTTTTGTTGACAATAAATTTGTGTG 58.826 29.630 10.44 5.37 35.55 3.82
3025 5381 8.174422 GTGCTTTTGTTGACAATAAATTTGTGT 58.826 29.630 10.44 8.59 35.55 3.72
3026 5382 8.173775 TGTGCTTTTGTTGACAATAAATTTGTG 58.826 29.630 10.44 1.60 35.55 3.33
3030 5386 7.012138 TGCATGTGCTTTTGTTGACAATAAATT 59.988 29.630 10.44 0.00 42.66 1.82
3043 5401 6.402766 CCAAATTTAGGATGCATGTGCTTTTG 60.403 38.462 2.46 7.21 42.66 2.44
3089 5447 6.314400 GTGTGTCAGAAGGCGGTTTAATTATA 59.686 38.462 0.00 0.00 0.00 0.98
3090 5448 5.123344 GTGTGTCAGAAGGCGGTTTAATTAT 59.877 40.000 0.00 0.00 0.00 1.28
3109 5467 0.529555 GGCCGCAATTTTGTGTGTGT 60.530 50.000 3.43 0.00 36.98 3.72
3110 5468 0.249405 AGGCCGCAATTTTGTGTGTG 60.249 50.000 0.00 0.00 36.98 3.82
3121 5480 2.284798 TTTTGTTCGCAAGGCCGCAA 62.285 50.000 0.00 0.00 38.47 4.85
3150 5510 2.301346 CTTGAGGTTTCAGGTTGCTGT 58.699 47.619 0.00 0.00 34.15 4.40
3192 5558 5.418310 AACATTGTTGAACTGGTAACTCG 57.582 39.130 0.15 0.00 37.61 4.18
3221 5597 5.602628 CTTAGCAATACCTCTCCCTGTAAC 58.397 45.833 0.00 0.00 0.00 2.50
3335 5722 9.168553 TGTCTGTATCTAGATTAGGTAGGTAGT 57.831 37.037 11.25 0.00 0.00 2.73
3414 5818 7.458409 AGCTAATTCACATGATTGAAACTGT 57.542 32.000 0.00 0.00 38.95 3.55
3415 5821 9.661187 GATAGCTAATTCACATGATTGAAACTG 57.339 33.333 0.00 0.00 38.95 3.16
3475 5884 1.601430 CGATCGACATCTCTCTCAGCA 59.399 52.381 10.26 0.00 0.00 4.41
3676 6085 0.756442 AGCAAGCAGGCAAGGAACAA 60.756 50.000 2.37 0.00 35.83 2.83
3714 6123 2.553086 CAAGAGAAGATGAGCAGAGGC 58.447 52.381 0.00 0.00 41.61 4.70



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.