Multiple sequence alignment - TraesCS2B01G522100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G522100 chr2B 100.000 2411 0 0 1 2411 717090901 717088491 0.000000e+00 4453.0
1 TraesCS2B01G522100 chr2B 98.485 726 11 0 1686 2411 29167094 29167819 0.000000e+00 1280.0
2 TraesCS2B01G522100 chr2B 96.472 737 26 0 1675 2411 602776983 602776247 0.000000e+00 1218.0
3 TraesCS2B01G522100 chr2B 96.164 730 21 5 1686 2411 602741944 602742670 0.000000e+00 1186.0
4 TraesCS2B01G522100 chr2B 97.658 555 9 2 898 1449 261045387 261045940 0.000000e+00 950.0
5 TraesCS2B01G522100 chr2B 90.598 117 6 3 1573 1684 535299266 535299382 1.490000e-32 150.0
6 TraesCS2B01G522100 chr6A 98.734 948 11 1 498 1444 13685544 13684597 0.000000e+00 1683.0
7 TraesCS2B01G522100 chr6A 98.189 497 9 0 1 497 13686079 13685583 0.000000e+00 869.0
8 TraesCS2B01G522100 chr3B 96.832 726 23 0 1686 2411 168674287 168675012 0.000000e+00 1214.0
9 TraesCS2B01G522100 chr3B 96.556 726 22 3 1686 2411 59363474 59364196 0.000000e+00 1199.0
10 TraesCS2B01G522100 chr3B 95.342 730 26 7 1686 2411 711072974 711072249 0.000000e+00 1153.0
11 TraesCS2B01G522100 chr3B 77.137 503 105 10 1 497 640971330 640970832 1.410000e-72 283.0
12 TraesCS2B01G522100 chr7B 96.429 728 24 1 1686 2411 501956245 501955518 0.000000e+00 1199.0
13 TraesCS2B01G522100 chr7B 90.265 113 9 2 1573 1684 477966215 477966326 1.930000e-31 147.0
14 TraesCS2B01G522100 chr4B 96.306 731 26 1 1681 2411 187448566 187447837 0.000000e+00 1199.0
15 TraesCS2B01G522100 chr4B 92.035 113 7 2 1573 1684 610079766 610079877 8.920000e-35 158.0
16 TraesCS2B01G522100 chr4D 93.160 731 40 8 1686 2410 151963441 151964167 0.000000e+00 1064.0
17 TraesCS2B01G522100 chr4D 77.490 502 108 2 1 497 15960045 15960546 1.810000e-76 296.0
18 TraesCS2B01G522100 chr3D 79.477 497 101 1 1 497 56567525 56568020 3.810000e-93 351.0
19 TraesCS2B01G522100 chr3D 79.116 498 101 3 1 497 480415324 480414829 8.250000e-90 340.0
20 TraesCS2B01G522100 chr3D 89.565 115 10 1 1572 1684 199127055 199127169 6.950000e-31 145.0
21 TraesCS2B01G522100 chrUn 79.915 468 86 7 17 480 68204049 68204512 1.070000e-88 337.0
22 TraesCS2B01G522100 chr7D 77.555 499 108 4 1 497 535773116 535773612 5.040000e-77 298.0
23 TraesCS2B01G522100 chr2A 81.139 281 44 8 215 489 158806561 158806284 1.450000e-52 217.0
24 TraesCS2B01G522100 chr2A 90.351 114 9 2 1573 1685 61795043 61795155 5.370000e-32 148.0
25 TraesCS2B01G522100 chr5B 77.612 335 66 8 161 489 10578872 10579203 6.800000e-46 195.0
26 TraesCS2B01G522100 chr5B 90.265 113 9 2 1573 1684 470315814 470315703 1.930000e-31 147.0
27 TraesCS2B01G522100 chr5D 90.598 117 6 2 1573 1684 452308670 452308786 1.490000e-32 150.0
28 TraesCS2B01G522100 chr7A 90.265 113 9 2 1573 1684 603539859 603539748 1.930000e-31 147.0
29 TraesCS2B01G522100 chr6D 90.265 113 9 2 1573 1684 88894363 88894474 1.930000e-31 147.0
30 TraesCS2B01G522100 chr1D 97.826 46 1 0 1386 1431 20657880 20657925 1.990000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G522100 chr2B 717088491 717090901 2410 True 4453 4453 100.0000 1 2411 1 chr2B.!!$R2 2410
1 TraesCS2B01G522100 chr2B 29167094 29167819 725 False 1280 1280 98.4850 1686 2411 1 chr2B.!!$F1 725
2 TraesCS2B01G522100 chr2B 602776247 602776983 736 True 1218 1218 96.4720 1675 2411 1 chr2B.!!$R1 736
3 TraesCS2B01G522100 chr2B 602741944 602742670 726 False 1186 1186 96.1640 1686 2411 1 chr2B.!!$F4 725
4 TraesCS2B01G522100 chr2B 261045387 261045940 553 False 950 950 97.6580 898 1449 1 chr2B.!!$F2 551
5 TraesCS2B01G522100 chr6A 13684597 13686079 1482 True 1276 1683 98.4615 1 1444 2 chr6A.!!$R1 1443
6 TraesCS2B01G522100 chr3B 168674287 168675012 725 False 1214 1214 96.8320 1686 2411 1 chr3B.!!$F2 725
7 TraesCS2B01G522100 chr3B 59363474 59364196 722 False 1199 1199 96.5560 1686 2411 1 chr3B.!!$F1 725
8 TraesCS2B01G522100 chr3B 711072249 711072974 725 True 1153 1153 95.3420 1686 2411 1 chr3B.!!$R2 725
9 TraesCS2B01G522100 chr7B 501955518 501956245 727 True 1199 1199 96.4290 1686 2411 1 chr7B.!!$R1 725
10 TraesCS2B01G522100 chr4B 187447837 187448566 729 True 1199 1199 96.3060 1681 2411 1 chr4B.!!$R1 730
11 TraesCS2B01G522100 chr4D 151963441 151964167 726 False 1064 1064 93.1600 1686 2410 1 chr4D.!!$F2 724
12 TraesCS2B01G522100 chr4D 15960045 15960546 501 False 296 296 77.4900 1 497 1 chr4D.!!$F1 496

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
66 67 0.179032 TGATATGGCGCGTTGGGAAT 60.179 50.0 8.43 0.0 0.0 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1533 1581 0.178995 TCTGGCATTGCACAAGGACA 60.179 50.0 11.39 3.28 37.84 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
60 61 0.748005 AAGGCTTGATATGGCGCGTT 60.748 50.000 8.43 0.00 35.01 4.84
66 67 0.179032 TGATATGGCGCGTTGGGAAT 60.179 50.000 8.43 0.00 0.00 3.01
190 191 3.343788 CTGGCTGACGACGGGAGAC 62.344 68.421 0.00 0.00 0.00 3.36
522 566 2.110213 TGGTGTGGAACGTGAGGC 59.890 61.111 0.00 0.00 42.39 4.70
688 732 2.492088 TGAACGACTACCAGTCCTCATG 59.508 50.000 0.00 0.00 42.12 3.07
776 820 2.480419 GTGTCACGGAGGTTCTTGAATG 59.520 50.000 0.00 0.00 0.00 2.67
1249 1297 8.594550 AGGAAGCAAAACTACTACTGAAATCTA 58.405 33.333 0.00 0.00 0.00 1.98
1264 1312 5.838529 TGAAATCTAGACGTGAAGTTGTGA 58.161 37.500 0.00 0.00 0.00 3.58
1292 1340 1.071542 TGTGAGACGAGGCCAAAATCA 59.928 47.619 5.01 0.00 0.00 2.57
1465 1513 5.980698 AAGATGCACTTCTTGATGTATCG 57.019 39.130 1.73 0.00 41.30 2.92
1466 1514 3.806521 AGATGCACTTCTTGATGTATCGC 59.193 43.478 0.00 0.00 41.30 4.58
1467 1515 2.971307 TGCACTTCTTGATGTATCGCA 58.029 42.857 0.00 0.00 0.00 5.10
1468 1516 3.534554 TGCACTTCTTGATGTATCGCAT 58.465 40.909 0.00 0.00 41.24 4.73
1469 1517 3.940852 TGCACTTCTTGATGTATCGCATT 59.059 39.130 0.00 0.00 38.06 3.56
1470 1518 4.395854 TGCACTTCTTGATGTATCGCATTT 59.604 37.500 0.00 0.00 38.06 2.32
1471 1519 4.966366 GCACTTCTTGATGTATCGCATTTC 59.034 41.667 0.00 0.00 38.06 2.17
1472 1520 5.447683 GCACTTCTTGATGTATCGCATTTCA 60.448 40.000 0.00 0.00 38.06 2.69
1473 1521 6.545508 CACTTCTTGATGTATCGCATTTCAA 58.454 36.000 0.00 0.00 38.06 2.69
1474 1522 6.685828 CACTTCTTGATGTATCGCATTTCAAG 59.314 38.462 4.93 4.93 41.81 3.02
1475 1523 5.160699 TCTTGATGTATCGCATTTCAAGC 57.839 39.130 6.18 0.00 40.96 4.01
1476 1524 4.877823 TCTTGATGTATCGCATTTCAAGCT 59.122 37.500 6.18 0.00 40.96 3.74
1477 1525 5.355071 TCTTGATGTATCGCATTTCAAGCTT 59.645 36.000 0.00 0.00 40.96 3.74
1478 1526 6.538381 TCTTGATGTATCGCATTTCAAGCTTA 59.462 34.615 0.00 0.00 40.96 3.09
1479 1527 6.291067 TGATGTATCGCATTTCAAGCTTAG 57.709 37.500 0.00 0.00 38.06 2.18
1480 1528 4.536364 TGTATCGCATTTCAAGCTTAGC 57.464 40.909 0.00 0.00 0.00 3.09
1481 1529 3.312421 TGTATCGCATTTCAAGCTTAGCC 59.688 43.478 0.00 0.00 0.00 3.93
1482 1530 0.726827 TCGCATTTCAAGCTTAGCCG 59.273 50.000 0.00 0.00 0.00 5.52
1483 1531 0.726827 CGCATTTCAAGCTTAGCCGA 59.273 50.000 0.00 0.00 0.00 5.54
1484 1532 1.331756 CGCATTTCAAGCTTAGCCGAT 59.668 47.619 0.00 0.00 0.00 4.18
1485 1533 2.543848 CGCATTTCAAGCTTAGCCGATA 59.456 45.455 0.00 0.00 0.00 2.92
1486 1534 3.187227 CGCATTTCAAGCTTAGCCGATAT 59.813 43.478 0.00 0.00 0.00 1.63
1487 1535 4.388773 CGCATTTCAAGCTTAGCCGATATA 59.611 41.667 0.00 0.00 0.00 0.86
1488 1536 5.107104 CGCATTTCAAGCTTAGCCGATATAA 60.107 40.000 0.00 0.00 0.00 0.98
1489 1537 6.402550 CGCATTTCAAGCTTAGCCGATATAAT 60.403 38.462 0.00 0.00 0.00 1.28
1490 1538 7.201522 CGCATTTCAAGCTTAGCCGATATAATA 60.202 37.037 0.00 0.00 0.00 0.98
1491 1539 8.616076 GCATTTCAAGCTTAGCCGATATAATAT 58.384 33.333 0.00 0.00 0.00 1.28
1498 1546 9.517609 AAGCTTAGCCGATATAATATCTAAACG 57.482 33.333 0.00 0.00 0.00 3.60
1499 1547 8.900781 AGCTTAGCCGATATAATATCTAAACGA 58.099 33.333 0.00 0.00 0.00 3.85
1500 1548 9.680315 GCTTAGCCGATATAATATCTAAACGAT 57.320 33.333 0.00 0.00 36.11 3.73
1518 1566 6.768029 AACGATTAGTTTTTACACGTAGCA 57.232 33.333 0.00 0.00 40.88 3.49
1519 1567 6.768029 ACGATTAGTTTTTACACGTAGCAA 57.232 33.333 0.00 0.00 0.00 3.91
1520 1568 7.355332 ACGATTAGTTTTTACACGTAGCAAT 57.645 32.000 0.00 0.00 0.00 3.56
1521 1569 7.231607 ACGATTAGTTTTTACACGTAGCAATG 58.768 34.615 0.00 0.00 0.00 2.82
1522 1570 7.095523 ACGATTAGTTTTTACACGTAGCAATGT 60.096 33.333 0.00 0.00 0.00 2.71
1523 1571 8.374728 CGATTAGTTTTTACACGTAGCAATGTA 58.625 33.333 0.00 0.00 0.00 2.29
1524 1572 9.685005 GATTAGTTTTTACACGTAGCAATGTAG 57.315 33.333 0.00 0.00 33.03 2.74
1525 1573 8.592105 TTAGTTTTTACACGTAGCAATGTAGT 57.408 30.769 0.00 0.00 33.03 2.73
1526 1574 9.689976 TTAGTTTTTACACGTAGCAATGTAGTA 57.310 29.630 0.00 0.00 33.03 1.82
1527 1575 8.011067 AGTTTTTACACGTAGCAATGTAGTAC 57.989 34.615 0.00 0.00 33.03 2.73
1528 1576 6.615809 TTTTACACGTAGCAATGTAGTACG 57.384 37.500 9.32 9.32 44.04 3.67
1529 1577 5.544136 TTACACGTAGCAATGTAGTACGA 57.456 39.130 15.22 0.00 41.64 3.43
1530 1578 4.012319 ACACGTAGCAATGTAGTACGAG 57.988 45.455 15.22 11.20 41.64 4.18
1531 1579 3.438087 ACACGTAGCAATGTAGTACGAGT 59.562 43.478 15.22 11.67 41.64 4.18
1532 1580 4.083110 ACACGTAGCAATGTAGTACGAGTT 60.083 41.667 15.22 0.00 39.78 3.01
1533 1581 4.855388 CACGTAGCAATGTAGTACGAGTTT 59.145 41.667 15.22 0.00 41.64 2.66
1534 1582 4.855388 ACGTAGCAATGTAGTACGAGTTTG 59.145 41.667 15.22 0.00 41.64 2.93
1535 1583 4.855388 CGTAGCAATGTAGTACGAGTTTGT 59.145 41.667 6.22 0.00 41.64 2.83
1536 1584 5.003214 CGTAGCAATGTAGTACGAGTTTGTC 59.997 44.000 6.22 0.00 41.64 3.18
1537 1585 4.243270 AGCAATGTAGTACGAGTTTGTCC 58.757 43.478 0.00 0.00 0.00 4.02
1538 1586 4.021368 AGCAATGTAGTACGAGTTTGTCCT 60.021 41.667 0.00 0.00 0.00 3.85
1539 1587 4.689345 GCAATGTAGTACGAGTTTGTCCTT 59.311 41.667 0.00 0.00 0.00 3.36
1540 1588 5.389516 GCAATGTAGTACGAGTTTGTCCTTG 60.390 44.000 0.00 0.00 0.00 3.61
1541 1589 4.924305 TGTAGTACGAGTTTGTCCTTGT 57.076 40.909 0.00 0.00 33.59 3.16
1542 1590 4.613944 TGTAGTACGAGTTTGTCCTTGTG 58.386 43.478 0.00 0.00 31.47 3.33
1543 1591 2.480845 AGTACGAGTTTGTCCTTGTGC 58.519 47.619 0.00 0.00 33.14 4.57
1544 1592 2.159014 AGTACGAGTTTGTCCTTGTGCA 60.159 45.455 0.00 0.00 34.82 4.57
1545 1593 1.745232 ACGAGTTTGTCCTTGTGCAA 58.255 45.000 0.00 0.00 0.00 4.08
1546 1594 2.297701 ACGAGTTTGTCCTTGTGCAAT 58.702 42.857 0.00 0.00 0.00 3.56
1547 1595 2.033299 ACGAGTTTGTCCTTGTGCAATG 59.967 45.455 0.00 0.00 0.00 2.82
1548 1596 2.397549 GAGTTTGTCCTTGTGCAATGC 58.602 47.619 0.00 0.00 0.00 3.56
1549 1597 1.069049 AGTTTGTCCTTGTGCAATGCC 59.931 47.619 1.53 0.00 0.00 4.40
1550 1598 1.117994 TTTGTCCTTGTGCAATGCCA 58.882 45.000 1.53 0.00 0.00 4.92
1551 1599 0.675083 TTGTCCTTGTGCAATGCCAG 59.325 50.000 1.53 0.00 0.00 4.85
1552 1600 0.178995 TGTCCTTGTGCAATGCCAGA 60.179 50.000 1.53 0.00 0.00 3.86
1553 1601 1.180029 GTCCTTGTGCAATGCCAGAT 58.820 50.000 1.53 0.00 0.00 2.90
1554 1602 1.547372 GTCCTTGTGCAATGCCAGATT 59.453 47.619 1.53 0.00 0.00 2.40
1555 1603 1.546923 TCCTTGTGCAATGCCAGATTG 59.453 47.619 1.53 0.00 0.00 2.67
1559 1607 4.507879 GCAATGCCAGATTGCCAC 57.492 55.556 8.64 0.00 46.21 5.01
1560 1608 1.895238 GCAATGCCAGATTGCCACT 59.105 52.632 8.64 0.00 46.21 4.00
1561 1609 1.105457 GCAATGCCAGATTGCCACTA 58.895 50.000 8.64 0.00 46.21 2.74
1562 1610 1.477700 GCAATGCCAGATTGCCACTAA 59.522 47.619 8.64 0.00 46.21 2.24
1563 1611 2.101917 GCAATGCCAGATTGCCACTAAT 59.898 45.455 8.64 0.00 46.21 1.73
1564 1612 3.318839 GCAATGCCAGATTGCCACTAATA 59.681 43.478 8.64 0.00 46.21 0.98
1565 1613 4.794003 GCAATGCCAGATTGCCACTAATAC 60.794 45.833 8.64 0.00 46.21 1.89
1566 1614 3.643199 TGCCAGATTGCCACTAATACA 57.357 42.857 0.00 0.00 0.00 2.29
1567 1615 4.169059 TGCCAGATTGCCACTAATACAT 57.831 40.909 0.00 0.00 0.00 2.29
1568 1616 3.884693 TGCCAGATTGCCACTAATACATG 59.115 43.478 0.00 0.00 0.00 3.21
1569 1617 3.885297 GCCAGATTGCCACTAATACATGT 59.115 43.478 2.69 2.69 0.00 3.21
1570 1618 5.063204 GCCAGATTGCCACTAATACATGTA 58.937 41.667 8.27 8.27 0.00 2.29
1571 1619 5.707298 GCCAGATTGCCACTAATACATGTAT 59.293 40.000 12.75 12.75 0.00 2.29
1572 1620 6.128172 GCCAGATTGCCACTAATACATGTATC 60.128 42.308 18.52 5.99 0.00 2.24
1573 1621 7.164122 CCAGATTGCCACTAATACATGTATCT 58.836 38.462 18.52 11.23 0.00 1.98
1574 1622 7.332926 CCAGATTGCCACTAATACATGTATCTC 59.667 40.741 18.52 5.66 0.00 2.75
1575 1623 7.874528 CAGATTGCCACTAATACATGTATCTCA 59.125 37.037 18.52 6.69 0.00 3.27
1576 1624 8.600668 AGATTGCCACTAATACATGTATCTCAT 58.399 33.333 18.52 5.96 37.22 2.90
1577 1625 9.224267 GATTGCCACTAATACATGTATCTCATT 57.776 33.333 18.52 7.37 34.09 2.57
1578 1626 8.978874 TTGCCACTAATACATGTATCTCATTT 57.021 30.769 18.52 5.67 34.09 2.32
1579 1627 8.607441 TGCCACTAATACATGTATCTCATTTC 57.393 34.615 18.52 6.82 34.09 2.17
1580 1628 7.661437 TGCCACTAATACATGTATCTCATTTCC 59.339 37.037 18.52 5.00 34.09 3.13
1581 1629 7.148573 GCCACTAATACATGTATCTCATTTCCG 60.149 40.741 18.52 2.71 34.09 4.30
1582 1630 7.148573 CCACTAATACATGTATCTCATTTCCGC 60.149 40.741 18.52 0.00 34.09 5.54
1583 1631 7.384932 CACTAATACATGTATCTCATTTCCGCA 59.615 37.037 18.52 0.00 34.09 5.69
1584 1632 7.931407 ACTAATACATGTATCTCATTTCCGCAA 59.069 33.333 18.52 0.00 34.09 4.85
1585 1633 4.882671 ACATGTATCTCATTTCCGCAAC 57.117 40.909 0.00 0.00 34.09 4.17
1586 1634 3.627577 ACATGTATCTCATTTCCGCAACC 59.372 43.478 0.00 0.00 34.09 3.77
1587 1635 3.627395 TGTATCTCATTTCCGCAACCT 57.373 42.857 0.00 0.00 0.00 3.50
1588 1636 3.270027 TGTATCTCATTTCCGCAACCTG 58.730 45.455 0.00 0.00 0.00 4.00
1589 1637 1.098050 ATCTCATTTCCGCAACCTGC 58.902 50.000 0.00 0.00 40.69 4.85
1615 1663 3.490759 GTGACGAGGCGTGGCATG 61.491 66.667 1.31 1.31 41.37 4.06
1616 1664 4.758251 TGACGAGGCGTGGCATGG 62.758 66.667 9.08 0.00 41.37 3.66
1629 1677 4.598894 CATGGCGAGGCGGAGGAG 62.599 72.222 0.00 0.00 0.00 3.69
1648 1696 4.148825 GCGCGTGGATGTCCCTCT 62.149 66.667 8.43 0.00 35.38 3.69
1649 1697 2.579201 CGCGTGGATGTCCCTCTT 59.421 61.111 0.00 0.00 35.38 2.85
1650 1698 1.811266 CGCGTGGATGTCCCTCTTG 60.811 63.158 0.00 0.00 35.38 3.02
1651 1699 1.296715 GCGTGGATGTCCCTCTTGT 59.703 57.895 0.00 0.00 35.38 3.16
1652 1700 0.321653 GCGTGGATGTCCCTCTTGTT 60.322 55.000 0.00 0.00 35.38 2.83
1653 1701 1.726853 CGTGGATGTCCCTCTTGTTC 58.273 55.000 0.00 0.00 35.38 3.18
1654 1702 1.276421 CGTGGATGTCCCTCTTGTTCT 59.724 52.381 0.00 0.00 35.38 3.01
1655 1703 2.675317 CGTGGATGTCCCTCTTGTTCTC 60.675 54.545 0.00 0.00 35.38 2.87
1656 1704 2.303022 GTGGATGTCCCTCTTGTTCTCA 59.697 50.000 0.00 0.00 35.38 3.27
1657 1705 3.054802 GTGGATGTCCCTCTTGTTCTCAT 60.055 47.826 0.00 0.00 35.38 2.90
1658 1706 3.198635 TGGATGTCCCTCTTGTTCTCATC 59.801 47.826 0.00 0.00 35.38 2.92
1659 1707 3.432890 GGATGTCCCTCTTGTTCTCATCC 60.433 52.174 0.00 0.00 41.51 3.51
1660 1708 2.907892 TGTCCCTCTTGTTCTCATCCT 58.092 47.619 0.00 0.00 0.00 3.24
1661 1709 2.834549 TGTCCCTCTTGTTCTCATCCTC 59.165 50.000 0.00 0.00 0.00 3.71
1662 1710 2.834549 GTCCCTCTTGTTCTCATCCTCA 59.165 50.000 0.00 0.00 0.00 3.86
1663 1711 3.454082 GTCCCTCTTGTTCTCATCCTCAT 59.546 47.826 0.00 0.00 0.00 2.90
1664 1712 4.651503 GTCCCTCTTGTTCTCATCCTCATA 59.348 45.833 0.00 0.00 0.00 2.15
1665 1713 4.651503 TCCCTCTTGTTCTCATCCTCATAC 59.348 45.833 0.00 0.00 0.00 2.39
1666 1714 4.406972 CCCTCTTGTTCTCATCCTCATACA 59.593 45.833 0.00 0.00 0.00 2.29
1667 1715 5.071519 CCCTCTTGTTCTCATCCTCATACAT 59.928 44.000 0.00 0.00 0.00 2.29
1668 1716 5.990386 CCTCTTGTTCTCATCCTCATACATG 59.010 44.000 0.00 0.00 0.00 3.21
1669 1717 6.407865 CCTCTTGTTCTCATCCTCATACATGT 60.408 42.308 2.69 2.69 0.00 3.21
1670 1718 7.201947 CCTCTTGTTCTCATCCTCATACATGTA 60.202 40.741 8.27 8.27 0.00 2.29
1671 1719 7.720442 TCTTGTTCTCATCCTCATACATGTAG 58.280 38.462 11.91 0.00 0.00 2.74
1672 1720 6.410942 TGTTCTCATCCTCATACATGTAGG 57.589 41.667 11.27 11.27 0.00 3.18
1673 1721 5.305386 TGTTCTCATCCTCATACATGTAGGG 59.695 44.000 16.88 14.72 0.00 3.53
1674 1722 5.339423 TCTCATCCTCATACATGTAGGGA 57.661 43.478 16.88 18.77 0.00 4.20
1675 1723 5.715921 TCTCATCCTCATACATGTAGGGAA 58.284 41.667 21.04 8.68 0.00 3.97
1676 1724 6.143206 TCTCATCCTCATACATGTAGGGAAA 58.857 40.000 21.04 14.44 0.00 3.13
1677 1725 6.268617 TCTCATCCTCATACATGTAGGGAAAG 59.731 42.308 21.04 19.82 0.00 2.62
1678 1726 6.143206 TCATCCTCATACATGTAGGGAAAGA 58.857 40.000 21.04 18.80 0.00 2.52
1679 1727 6.615316 TCATCCTCATACATGTAGGGAAAGAA 59.385 38.462 21.04 9.96 0.00 2.52
1680 1728 6.235231 TCCTCATACATGTAGGGAAAGAAC 57.765 41.667 16.88 0.00 0.00 3.01
1681 1729 5.130477 TCCTCATACATGTAGGGAAAGAACC 59.870 44.000 16.88 0.00 0.00 3.62
1682 1730 5.131142 CCTCATACATGTAGGGAAAGAACCT 59.869 44.000 16.88 0.00 42.15 3.50
1683 1731 6.235231 TCATACATGTAGGGAAAGAACCTC 57.765 41.667 16.88 0.00 39.54 3.85
1684 1732 5.964477 TCATACATGTAGGGAAAGAACCTCT 59.036 40.000 16.88 0.00 39.54 3.69
1830 1887 1.134037 TCCAAACCTTGTAAGCCACGT 60.134 47.619 0.00 0.00 0.00 4.49
1833 1890 1.878953 AACCTTGTAAGCCACGTCAG 58.121 50.000 0.00 0.00 0.00 3.51
2139 2199 1.434188 TCTTCCTCCACCTTCAGCAA 58.566 50.000 0.00 0.00 0.00 3.91
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 1.655329 CTCGAGGCCGTAGTGGATC 59.345 63.158 3.91 0.00 42.00 3.36
60 61 1.075601 GGATATGCTCCCCATTCCCA 58.924 55.000 0.00 0.00 38.19 4.37
66 67 0.837691 AGATGCGGATATGCTCCCCA 60.838 55.000 0.00 0.00 41.49 4.96
190 191 0.107703 TGCAGTAGCTCCCCATTTCG 60.108 55.000 0.00 0.00 42.74 3.46
192 193 3.890527 CTGCAGTAGCTCCCCATTT 57.109 52.632 5.25 0.00 42.74 2.32
522 566 0.868406 GCAGAAGACGTGGAAAGTGG 59.132 55.000 0.00 0.00 0.00 4.00
600 644 0.807496 GTGCTTGATGTCTTCCAGCC 59.193 55.000 8.73 0.00 41.36 4.85
621 665 0.462047 CAGTAGCCATTCCGGTCCAC 60.462 60.000 0.00 0.00 36.97 4.02
688 732 0.667792 GCCACGTTCTCCAGAGTGTC 60.668 60.000 0.00 0.00 33.14 3.67
1205 1253 2.043752 CCACCATGGCTGCCATCA 60.044 61.111 30.49 5.27 43.15 3.07
1249 1297 3.123804 GTGACATCACAACTTCACGTCT 58.876 45.455 7.15 0.00 45.75 4.18
1264 1312 1.404717 GCCTCGTCTCACATGTGACAT 60.405 52.381 24.56 0.00 38.16 3.06
1292 1340 0.987294 AGCAAGGGTGTGAGCTACAT 59.013 50.000 0.00 0.00 42.24 2.29
1444 1492 3.806521 GCGATACATCAAGAAGTGCATCT 59.193 43.478 0.00 0.00 0.00 2.90
1445 1493 3.557185 TGCGATACATCAAGAAGTGCATC 59.443 43.478 0.00 0.00 0.00 3.91
1446 1494 3.534554 TGCGATACATCAAGAAGTGCAT 58.465 40.909 0.00 0.00 0.00 3.96
1447 1495 2.971307 TGCGATACATCAAGAAGTGCA 58.029 42.857 0.00 0.00 0.00 4.57
1448 1496 4.542662 AATGCGATACATCAAGAAGTGC 57.457 40.909 0.00 0.00 38.34 4.40
1449 1497 6.110543 TGAAATGCGATACATCAAGAAGTG 57.889 37.500 0.00 0.00 38.34 3.16
1450 1498 6.676456 GCTTGAAATGCGATACATCAAGAAGT 60.676 38.462 15.73 0.00 40.53 3.01
1451 1499 5.680229 GCTTGAAATGCGATACATCAAGAAG 59.320 40.000 15.73 0.00 40.53 2.85
1452 1500 5.355071 AGCTTGAAATGCGATACATCAAGAA 59.645 36.000 15.73 0.00 40.53 2.52
1453 1501 4.877823 AGCTTGAAATGCGATACATCAAGA 59.122 37.500 15.73 0.00 40.53 3.02
1454 1502 5.165911 AGCTTGAAATGCGATACATCAAG 57.834 39.130 8.95 8.95 42.59 3.02
1455 1503 5.565592 AAGCTTGAAATGCGATACATCAA 57.434 34.783 0.00 0.00 42.59 2.57
1456 1504 5.277490 GCTAAGCTTGAAATGCGATACATCA 60.277 40.000 9.86 0.00 42.59 3.07
1457 1505 5.142962 GCTAAGCTTGAAATGCGATACATC 58.857 41.667 9.86 0.00 42.59 3.06
1458 1506 4.023707 GGCTAAGCTTGAAATGCGATACAT 60.024 41.667 9.86 0.00 42.59 2.29
1459 1507 3.312421 GGCTAAGCTTGAAATGCGATACA 59.688 43.478 9.86 0.00 42.59 2.29
1460 1508 3.604772 CGGCTAAGCTTGAAATGCGATAC 60.605 47.826 9.86 0.00 42.59 2.24
1461 1509 2.543848 CGGCTAAGCTTGAAATGCGATA 59.456 45.455 9.86 0.00 42.59 2.92
1462 1510 1.331756 CGGCTAAGCTTGAAATGCGAT 59.668 47.619 9.86 0.00 42.59 4.58
1463 1511 0.726827 CGGCTAAGCTTGAAATGCGA 59.273 50.000 9.86 0.00 42.59 5.10
1464 1512 0.726827 TCGGCTAAGCTTGAAATGCG 59.273 50.000 9.86 3.31 42.59 4.73
1465 1513 4.756084 ATATCGGCTAAGCTTGAAATGC 57.244 40.909 9.86 5.53 37.24 3.56
1472 1520 9.517609 CGTTTAGATATTATATCGGCTAAGCTT 57.482 33.333 3.48 3.48 0.00 3.74
1473 1521 8.900781 TCGTTTAGATATTATATCGGCTAAGCT 58.099 33.333 6.58 0.00 0.00 3.74
1474 1522 9.680315 ATCGTTTAGATATTATATCGGCTAAGC 57.320 33.333 6.58 2.77 37.93 3.09
1491 1539 8.638565 GCTACGTGTAAAAACTAATCGTTTAGA 58.361 33.333 17.93 0.00 44.77 2.10
1492 1540 8.427012 TGCTACGTGTAAAAACTAATCGTTTAG 58.573 33.333 10.96 10.96 44.77 1.85
1493 1541 8.291888 TGCTACGTGTAAAAACTAATCGTTTA 57.708 30.769 0.00 0.00 44.77 2.01
1495 1543 6.768029 TGCTACGTGTAAAAACTAATCGTT 57.232 33.333 0.00 0.00 37.47 3.85
1496 1544 6.768029 TTGCTACGTGTAAAAACTAATCGT 57.232 33.333 0.00 0.00 0.00 3.73
1497 1545 7.231607 ACATTGCTACGTGTAAAAACTAATCG 58.768 34.615 0.00 0.00 0.00 3.34
1498 1546 9.685005 CTACATTGCTACGTGTAAAAACTAATC 57.315 33.333 0.00 0.00 31.05 1.75
1499 1547 9.211485 ACTACATTGCTACGTGTAAAAACTAAT 57.789 29.630 0.00 0.00 31.05 1.73
1500 1548 8.592105 ACTACATTGCTACGTGTAAAAACTAA 57.408 30.769 0.00 0.00 31.05 2.24
1501 1549 9.128107 GTACTACATTGCTACGTGTAAAAACTA 57.872 33.333 0.00 0.00 31.05 2.24
1502 1550 7.148918 CGTACTACATTGCTACGTGTAAAAACT 60.149 37.037 0.00 0.00 31.05 2.66
1503 1551 6.944400 CGTACTACATTGCTACGTGTAAAAAC 59.056 38.462 0.00 0.00 31.05 2.43
1504 1552 6.860539 TCGTACTACATTGCTACGTGTAAAAA 59.139 34.615 0.00 0.00 35.75 1.94
1505 1553 6.377780 TCGTACTACATTGCTACGTGTAAAA 58.622 36.000 0.00 0.00 35.75 1.52
1506 1554 5.937187 TCGTACTACATTGCTACGTGTAAA 58.063 37.500 0.00 0.00 35.75 2.01
1507 1555 5.122239 ACTCGTACTACATTGCTACGTGTAA 59.878 40.000 0.00 0.00 38.27 2.41
1508 1556 4.631377 ACTCGTACTACATTGCTACGTGTA 59.369 41.667 0.00 0.00 38.27 2.90
1509 1557 3.438087 ACTCGTACTACATTGCTACGTGT 59.562 43.478 0.00 9.34 36.37 4.49
1510 1558 4.012319 ACTCGTACTACATTGCTACGTG 57.988 45.455 0.00 8.38 35.75 4.49
1511 1559 4.691860 AACTCGTACTACATTGCTACGT 57.308 40.909 0.00 0.00 35.75 3.57
1512 1560 4.855388 ACAAACTCGTACTACATTGCTACG 59.145 41.667 0.00 0.00 35.62 3.51
1513 1561 5.287992 GGACAAACTCGTACTACATTGCTAC 59.712 44.000 0.00 0.00 0.00 3.58
1514 1562 5.184479 AGGACAAACTCGTACTACATTGCTA 59.816 40.000 0.00 0.00 0.00 3.49
1515 1563 4.021368 AGGACAAACTCGTACTACATTGCT 60.021 41.667 0.00 0.00 0.00 3.91
1516 1564 4.243270 AGGACAAACTCGTACTACATTGC 58.757 43.478 0.00 0.00 0.00 3.56
1517 1565 5.694910 ACAAGGACAAACTCGTACTACATTG 59.305 40.000 0.00 0.00 26.75 2.82
1518 1566 5.694910 CACAAGGACAAACTCGTACTACATT 59.305 40.000 0.00 0.00 26.75 2.71
1519 1567 5.227908 CACAAGGACAAACTCGTACTACAT 58.772 41.667 0.00 0.00 26.75 2.29
1520 1568 4.613944 CACAAGGACAAACTCGTACTACA 58.386 43.478 0.00 0.00 26.75 2.74
1521 1569 3.427863 GCACAAGGACAAACTCGTACTAC 59.572 47.826 0.00 0.00 26.75 2.73
1522 1570 3.068448 TGCACAAGGACAAACTCGTACTA 59.932 43.478 0.00 0.00 26.75 1.82
1523 1571 2.159014 TGCACAAGGACAAACTCGTACT 60.159 45.455 0.00 0.00 0.00 2.73
1524 1572 2.206750 TGCACAAGGACAAACTCGTAC 58.793 47.619 0.00 0.00 0.00 3.67
1525 1573 2.605837 TGCACAAGGACAAACTCGTA 57.394 45.000 0.00 0.00 0.00 3.43
1526 1574 1.745232 TTGCACAAGGACAAACTCGT 58.255 45.000 0.00 0.00 0.00 4.18
1527 1575 2.653890 CATTGCACAAGGACAAACTCG 58.346 47.619 0.00 0.00 0.00 4.18
1528 1576 2.397549 GCATTGCACAAGGACAAACTC 58.602 47.619 3.15 0.00 0.00 3.01
1529 1577 1.069049 GGCATTGCACAAGGACAAACT 59.931 47.619 11.39 0.00 29.08 2.66
1530 1578 1.202510 TGGCATTGCACAAGGACAAAC 60.203 47.619 11.39 0.00 37.15 2.93
1531 1579 1.068895 CTGGCATTGCACAAGGACAAA 59.931 47.619 11.39 0.00 39.84 2.83
1532 1580 0.675083 CTGGCATTGCACAAGGACAA 59.325 50.000 11.39 0.00 39.84 3.18
1533 1581 0.178995 TCTGGCATTGCACAAGGACA 60.179 50.000 11.39 3.28 37.84 4.02
1534 1582 1.180029 ATCTGGCATTGCACAAGGAC 58.820 50.000 11.39 0.00 0.00 3.85
1535 1583 1.546923 CAATCTGGCATTGCACAAGGA 59.453 47.619 11.39 1.96 0.00 3.36
1536 1584 2.004583 CAATCTGGCATTGCACAAGG 57.995 50.000 11.39 0.00 0.00 3.61
1547 1595 3.885297 ACATGTATTAGTGGCAATCTGGC 59.115 43.478 0.00 0.00 44.03 4.85
1548 1596 7.164122 AGATACATGTATTAGTGGCAATCTGG 58.836 38.462 19.19 0.00 0.00 3.86
1549 1597 7.874528 TGAGATACATGTATTAGTGGCAATCTG 59.125 37.037 19.19 0.00 0.00 2.90
1550 1598 7.966812 TGAGATACATGTATTAGTGGCAATCT 58.033 34.615 19.19 9.63 0.00 2.40
1551 1599 8.783833 ATGAGATACATGTATTAGTGGCAATC 57.216 34.615 19.19 4.95 37.87 2.67
1552 1600 9.578576 AAATGAGATACATGTATTAGTGGCAAT 57.421 29.630 19.19 0.00 39.39 3.56
1553 1601 8.978874 AAATGAGATACATGTATTAGTGGCAA 57.021 30.769 19.19 1.59 39.39 4.52
1554 1602 7.661437 GGAAATGAGATACATGTATTAGTGGCA 59.339 37.037 19.19 11.30 39.39 4.92
1555 1603 7.148573 CGGAAATGAGATACATGTATTAGTGGC 60.149 40.741 19.19 5.91 39.39 5.01
1556 1604 7.148573 GCGGAAATGAGATACATGTATTAGTGG 60.149 40.741 19.19 5.19 39.39 4.00
1557 1605 7.384932 TGCGGAAATGAGATACATGTATTAGTG 59.615 37.037 19.19 4.99 39.39 2.74
1558 1606 7.441836 TGCGGAAATGAGATACATGTATTAGT 58.558 34.615 19.19 7.77 39.39 2.24
1559 1607 7.889589 TGCGGAAATGAGATACATGTATTAG 57.110 36.000 19.19 3.29 39.39 1.73
1560 1608 7.172532 GGTTGCGGAAATGAGATACATGTATTA 59.827 37.037 19.19 9.75 39.39 0.98
1561 1609 6.017109 GGTTGCGGAAATGAGATACATGTATT 60.017 38.462 19.19 9.54 39.39 1.89
1562 1610 5.470098 GGTTGCGGAAATGAGATACATGTAT 59.530 40.000 18.31 18.31 39.39 2.29
1563 1611 4.814234 GGTTGCGGAAATGAGATACATGTA 59.186 41.667 8.27 8.27 39.39 2.29
1564 1612 3.627577 GGTTGCGGAAATGAGATACATGT 59.372 43.478 2.69 2.69 39.39 3.21
1565 1613 3.879295 AGGTTGCGGAAATGAGATACATG 59.121 43.478 0.00 0.00 39.39 3.21
1566 1614 3.879295 CAGGTTGCGGAAATGAGATACAT 59.121 43.478 0.00 0.00 41.45 2.29
1567 1615 3.270027 CAGGTTGCGGAAATGAGATACA 58.730 45.455 0.00 0.00 0.00 2.29
1568 1616 2.032178 GCAGGTTGCGGAAATGAGATAC 59.968 50.000 7.23 0.00 31.71 2.24
1569 1617 2.288666 GCAGGTTGCGGAAATGAGATA 58.711 47.619 7.23 0.00 31.71 1.98
1570 1618 1.098050 GCAGGTTGCGGAAATGAGAT 58.902 50.000 7.23 0.00 31.71 2.75
1571 1619 2.555123 GCAGGTTGCGGAAATGAGA 58.445 52.632 7.23 0.00 31.71 3.27
1598 1646 3.490759 CATGCCACGCCTCGTCAC 61.491 66.667 0.00 0.00 38.32 3.67
1599 1647 4.758251 CCATGCCACGCCTCGTCA 62.758 66.667 0.00 0.00 38.32 4.35
1612 1660 4.598894 CTCCTCCGCCTCGCCATG 62.599 72.222 0.00 0.00 0.00 3.66
1631 1679 3.665675 AAGAGGGACATCCACGCGC 62.666 63.158 5.73 0.00 38.24 6.86
1632 1680 1.811266 CAAGAGGGACATCCACGCG 60.811 63.158 3.53 3.53 38.24 6.01
1633 1681 0.321653 AACAAGAGGGACATCCACGC 60.322 55.000 0.00 0.00 38.24 5.34
1634 1682 1.276421 AGAACAAGAGGGACATCCACG 59.724 52.381 0.00 0.00 38.24 4.94
1635 1683 2.303022 TGAGAACAAGAGGGACATCCAC 59.697 50.000 0.00 0.00 38.24 4.02
1636 1684 2.619931 TGAGAACAAGAGGGACATCCA 58.380 47.619 0.00 0.00 38.24 3.41
1637 1685 3.432890 GGATGAGAACAAGAGGGACATCC 60.433 52.174 0.00 0.00 43.02 3.51
1638 1686 3.454082 AGGATGAGAACAAGAGGGACATC 59.546 47.826 0.00 0.00 34.06 3.06
1639 1687 3.454082 GAGGATGAGAACAAGAGGGACAT 59.546 47.826 0.00 0.00 0.00 3.06
1640 1688 2.834549 GAGGATGAGAACAAGAGGGACA 59.165 50.000 0.00 0.00 0.00 4.02
1641 1689 2.834549 TGAGGATGAGAACAAGAGGGAC 59.165 50.000 0.00 0.00 0.00 4.46
1642 1690 3.190383 TGAGGATGAGAACAAGAGGGA 57.810 47.619 0.00 0.00 0.00 4.20
1643 1691 4.406972 TGTATGAGGATGAGAACAAGAGGG 59.593 45.833 0.00 0.00 0.00 4.30
1644 1692 5.604758 TGTATGAGGATGAGAACAAGAGG 57.395 43.478 0.00 0.00 0.00 3.69
1645 1693 6.580788 ACATGTATGAGGATGAGAACAAGAG 58.419 40.000 0.00 0.00 0.00 2.85
1646 1694 6.550938 ACATGTATGAGGATGAGAACAAGA 57.449 37.500 0.00 0.00 0.00 3.02
1647 1695 6.927936 CCTACATGTATGAGGATGAGAACAAG 59.072 42.308 5.91 0.00 31.15 3.16
1648 1696 6.183361 CCCTACATGTATGAGGATGAGAACAA 60.183 42.308 13.78 0.00 31.15 2.83
1649 1697 5.305386 CCCTACATGTATGAGGATGAGAACA 59.695 44.000 13.78 0.00 31.15 3.18
1650 1698 5.540337 TCCCTACATGTATGAGGATGAGAAC 59.460 44.000 13.78 0.00 31.15 3.01
1651 1699 5.715921 TCCCTACATGTATGAGGATGAGAA 58.284 41.667 13.78 0.00 31.15 2.87
1652 1700 5.339423 TCCCTACATGTATGAGGATGAGA 57.661 43.478 13.78 1.18 31.15 3.27
1653 1701 6.268617 TCTTTCCCTACATGTATGAGGATGAG 59.731 42.308 13.78 14.97 31.15 2.90
1654 1702 6.143206 TCTTTCCCTACATGTATGAGGATGA 58.857 40.000 13.78 13.38 31.15 2.92
1655 1703 6.425210 TCTTTCCCTACATGTATGAGGATG 57.575 41.667 13.78 11.81 31.15 3.51
1656 1704 6.183361 GGTTCTTTCCCTACATGTATGAGGAT 60.183 42.308 13.78 0.00 31.15 3.24
1657 1705 5.130477 GGTTCTTTCCCTACATGTATGAGGA 59.870 44.000 13.78 13.31 31.15 3.71
1658 1706 5.131142 AGGTTCTTTCCCTACATGTATGAGG 59.869 44.000 5.91 6.08 0.00 3.86
1659 1707 6.098982 AGAGGTTCTTTCCCTACATGTATGAG 59.901 42.308 5.91 0.00 30.60 2.90
1660 1708 5.964477 AGAGGTTCTTTCCCTACATGTATGA 59.036 40.000 5.91 3.65 30.60 2.15
1661 1709 6.240549 AGAGGTTCTTTCCCTACATGTATG 57.759 41.667 5.91 3.42 30.60 2.39
1662 1710 6.215636 ACAAGAGGTTCTTTCCCTACATGTAT 59.784 38.462 5.91 0.00 33.78 2.29
1663 1711 5.546499 ACAAGAGGTTCTTTCCCTACATGTA 59.454 40.000 5.25 5.25 33.78 2.29
1664 1712 4.351111 ACAAGAGGTTCTTTCCCTACATGT 59.649 41.667 2.69 2.69 33.78 3.21
1665 1713 4.911390 ACAAGAGGTTCTTTCCCTACATG 58.089 43.478 0.00 0.00 33.78 3.21
1666 1714 5.584551 AACAAGAGGTTCTTTCCCTACAT 57.415 39.130 0.00 0.00 33.78 2.29
1667 1715 5.842328 TCTAACAAGAGGTTCTTTCCCTACA 59.158 40.000 0.00 0.00 40.96 2.74
1668 1716 6.356186 TCTAACAAGAGGTTCTTTCCCTAC 57.644 41.667 0.00 0.00 40.96 3.18
1669 1717 7.569599 ATTCTAACAAGAGGTTCTTTCCCTA 57.430 36.000 0.00 0.00 40.96 3.53
1670 1718 5.906772 TTCTAACAAGAGGTTCTTTCCCT 57.093 39.130 0.00 0.00 40.96 4.20
1671 1719 7.621796 TCTATTCTAACAAGAGGTTCTTTCCC 58.378 38.462 0.00 0.00 40.96 3.97
1672 1720 8.315482 ACTCTATTCTAACAAGAGGTTCTTTCC 58.685 37.037 3.84 0.00 40.88 3.13
1673 1721 9.713713 AACTCTATTCTAACAAGAGGTTCTTTC 57.286 33.333 3.84 0.00 40.88 2.62
1674 1722 9.713713 GAACTCTATTCTAACAAGAGGTTCTTT 57.286 33.333 3.84 0.00 37.42 2.52
1675 1723 8.030106 CGAACTCTATTCTAACAAGAGGTTCTT 58.970 37.037 3.84 0.00 37.42 2.52
1676 1724 7.177041 ACGAACTCTATTCTAACAAGAGGTTCT 59.823 37.037 0.00 0.00 37.42 3.01
1677 1725 7.314393 ACGAACTCTATTCTAACAAGAGGTTC 58.686 38.462 0.00 0.00 37.42 3.62
1678 1726 7.229581 ACGAACTCTATTCTAACAAGAGGTT 57.770 36.000 0.00 0.00 37.42 3.50
1679 1727 6.837471 ACGAACTCTATTCTAACAAGAGGT 57.163 37.500 0.00 0.00 39.98 3.85
1680 1728 8.211116 TCTACGAACTCTATTCTAACAAGAGG 57.789 38.462 0.00 0.00 40.88 3.69
1681 1729 9.100554 TCTCTACGAACTCTATTCTAACAAGAG 57.899 37.037 0.00 0.00 42.04 2.85
1682 1730 9.616156 ATCTCTACGAACTCTATTCTAACAAGA 57.384 33.333 0.00 0.00 0.00 3.02
1830 1887 6.873605 CGCATGTATATTTATGGAAGGACTGA 59.126 38.462 0.00 0.00 0.00 3.41
1833 1890 5.163754 GCCGCATGTATATTTATGGAAGGAC 60.164 44.000 0.00 0.00 0.00 3.85
2139 2199 3.999297 GACCCGAGAGAGGAGGCGT 62.999 68.421 0.00 0.00 0.00 5.68


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.