Multiple sequence alignment - TraesCS2B01G521000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G521000 chr2B 100.000 5215 0 0 813 6027 715923068 715928282 0.000000e+00 9631.0
1 TraesCS2B01G521000 chr2B 100.000 437 0 0 1 437 715922256 715922692 0.000000e+00 808.0
2 TraesCS2B01G521000 chr2B 95.536 112 3 2 5751 5861 440223876 440223766 1.730000e-40 178.0
3 TraesCS2B01G521000 chr2B 93.396 106 7 0 1125 1230 23656782 23656677 2.250000e-34 158.0
4 TraesCS2B01G521000 chr2B 93.939 99 5 1 2639 2737 364949129 364949032 1.350000e-31 148.0
5 TraesCS2B01G521000 chr2B 90.090 111 8 3 2621 2729 40437934 40438043 2.260000e-29 141.0
6 TraesCS2B01G521000 chr2B 94.737 57 2 1 1577 1632 715923803 715923859 2.990000e-13 87.9
7 TraesCS2B01G521000 chr2B 94.737 57 2 1 1548 1604 715923832 715923887 2.990000e-13 87.9
8 TraesCS2B01G521000 chr2B 94.545 55 3 0 5860 5914 715927929 715927983 1.080000e-12 86.1
9 TraesCS2B01G521000 chr2B 94.545 55 3 0 5674 5728 715928115 715928169 1.080000e-12 86.1
10 TraesCS2B01G521000 chr2D 94.413 2273 89 19 3256 5511 590677038 590679289 0.000000e+00 3459.0
11 TraesCS2B01G521000 chr2D 93.737 1852 65 21 830 2645 590674977 590676813 0.000000e+00 2730.0
12 TraesCS2B01G521000 chr2D 89.306 346 21 8 12 344 590674254 590674596 2.600000e-113 420.0
13 TraesCS2B01G521000 chr2D 93.137 204 8 2 2738 2937 590676839 590677040 1.640000e-75 294.0
14 TraesCS2B01G521000 chr2D 88.832 197 14 5 5535 5728 590681715 590681906 1.010000e-57 235.0
15 TraesCS2B01G521000 chr2D 90.476 168 16 0 5860 6027 590681852 590682019 7.860000e-54 222.0
16 TraesCS2B01G521000 chr2D 94.595 111 5 1 5752 5861 532305889 532305999 2.890000e-38 171.0
17 TraesCS2B01G521000 chr2D 100.000 44 0 0 1577 1620 590675689 590675732 1.390000e-11 82.4
18 TraesCS2B01G521000 chr2D 97.059 34 1 0 404 437 590674905 590674938 2.350000e-04 58.4
19 TraesCS2B01G521000 chr2A 93.657 2286 81 19 3484 5723 725345794 725348061 0.000000e+00 3360.0
20 TraesCS2B01G521000 chr2A 93.493 1291 51 11 1371 2637 725343878 725345159 0.000000e+00 1888.0
21 TraesCS2B01G521000 chr2A 91.776 535 28 7 813 1342 725343362 725343885 0.000000e+00 730.0
22 TraesCS2B01G521000 chr2A 84.896 384 27 11 65 437 725342972 725343335 5.740000e-95 359.0
23 TraesCS2B01G521000 chr2A 93.458 214 10 1 2728 2937 725345299 725345512 1.260000e-81 315.0
24 TraesCS2B01G521000 chr2A 94.578 166 5 3 3256 3420 725345510 725345672 2.790000e-63 254.0
25 TraesCS2B01G521000 chr2A 96.454 141 5 0 2505 2645 725345160 725345300 3.630000e-57 233.0
26 TraesCS2B01G521000 chr2A 90.476 105 10 0 1126 1230 353868625 353868729 8.150000e-29 139.0
27 TraesCS2B01G521000 chr2A 97.727 44 1 0 1577 1620 725344055 725344098 6.480000e-10 76.8
28 TraesCS2B01G521000 chr3A 95.092 326 15 1 2934 3258 251325287 251325612 4.170000e-141 512.0
29 TraesCS2B01G521000 chr3B 93.293 328 18 4 2934 3258 279652343 279652669 1.170000e-131 481.0
30 TraesCS2B01G521000 chr7D 91.385 325 25 3 2935 3258 197146683 197146361 5.540000e-120 442.0
31 TraesCS2B01G521000 chr6D 90.769 325 29 1 2933 3256 454925449 454925125 3.340000e-117 433.0
32 TraesCS2B01G521000 chr5D 91.167 317 26 2 2941 3256 545144213 545144528 4.320000e-116 429.0
33 TraesCS2B01G521000 chr5D 94.783 115 5 1 5753 5867 183619015 183618902 1.730000e-40 178.0
34 TraesCS2B01G521000 chr5D 96.226 106 4 0 1125 1230 54191000 54190895 2.230000e-39 174.0
35 TraesCS2B01G521000 chr5D 93.220 118 6 2 5760 5877 328501282 328501397 8.030000e-39 172.0
36 TraesCS2B01G521000 chr5D 91.743 109 8 1 2632 2739 434870255 434870147 3.760000e-32 150.0
37 TraesCS2B01G521000 chr5A 90.769 325 24 5 2935 3258 17384954 17384635 4.320000e-116 429.0
38 TraesCS2B01G521000 chr5A 89.846 325 27 5 2935 3258 17387244 17386925 4.350000e-111 412.0
39 TraesCS2B01G521000 chr5A 93.939 99 4 2 2636 2732 225248412 225248510 1.350000e-31 148.0
40 TraesCS2B01G521000 chr4B 90.343 321 30 1 2937 3256 479374621 479374941 2.600000e-113 420.0
41 TraesCS2B01G521000 chrUn 89.846 325 27 5 2935 3258 392418209 392417890 4.350000e-111 412.0
42 TraesCS2B01G521000 chrUn 99.000 100 1 0 5764 5863 305213228 305213129 4.800000e-41 180.0
43 TraesCS2B01G521000 chr7A 99.010 101 1 0 5761 5861 68887572 68887672 1.330000e-41 182.0
44 TraesCS2B01G521000 chr7A 97.143 105 3 0 5763 5867 222500971 222500867 1.730000e-40 178.0
45 TraesCS2B01G521000 chr3D 95.536 112 4 1 5763 5874 462197413 462197523 1.730000e-40 178.0
46 TraesCS2B01G521000 chr6A 95.370 108 5 0 5758 5865 600701854 600701747 8.030000e-39 172.0
47 TraesCS2B01G521000 chr1B 93.396 106 7 0 1125 1230 102154827 102154932 2.250000e-34 158.0
48 TraesCS2B01G521000 chr1B 95.745 94 4 0 2639 2732 102141163 102141256 1.050000e-32 152.0
49 TraesCS2B01G521000 chr1B 95.699 93 4 0 2643 2735 149606483 149606575 3.760000e-32 150.0
50 TraesCS2B01G521000 chr1B 91.429 105 8 1 2636 2739 301949525 301949421 6.300000e-30 143.0
51 TraesCS2B01G521000 chr5B 92.453 106 8 0 1125 1230 674913697 674913802 1.050000e-32 152.0
52 TraesCS2B01G521000 chr4D 94.000 100 6 0 2636 2735 164649448 164649547 1.050000e-32 152.0
53 TraesCS2B01G521000 chr7B 91.509 106 9 0 1125 1230 540128676 540128571 4.870000e-31 147.0
54 TraesCS2B01G521000 chr6B 91.429 105 9 0 1126 1230 619067394 619067290 1.750000e-30 145.0
55 TraesCS2B01G521000 chr1D 89.381 113 10 2 2641 2753 403236610 403236500 2.260000e-29 141.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G521000 chr2B 715922256 715928282 6026 False 5219.500 9631 100.000000 1 6027 2 chr2B.!!$F2 6026
1 TraesCS2B01G521000 chr2D 590674254 590682019 7765 False 937.600 3459 93.370000 12 6027 8 chr2D.!!$F2 6015
2 TraesCS2B01G521000 chr2A 725342972 725348061 5089 False 901.975 3360 93.254875 65 5723 8 chr2A.!!$F2 5658
3 TraesCS2B01G521000 chr5A 17384635 17387244 2609 True 420.500 429 90.307500 2935 3258 2 chr5A.!!$R1 323

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
107 116 0.461870 TGCGTGCCGATAGAAAGCAT 60.462 50.000 0.00 0.0 39.04 3.79 F
360 379 0.678048 ATCTGGAGCCGCACCTTTTC 60.678 55.000 8.41 0.0 0.00 2.29 F
372 391 1.606313 CCTTTTCCACCACCGCCAT 60.606 57.895 0.00 0.0 0.00 4.40 F
2120 2426 1.228552 AAGCTGTGCCGTTTCCCAT 60.229 52.632 0.00 0.0 0.00 4.00 F
3064 5821 0.109319 ATTGGGCACGCGCTAAAAAG 60.109 50.000 5.73 0.0 38.60 2.27 F
4486 7302 0.042731 CTCTTGGTGAGGACCCCCTA 59.957 60.000 0.00 0.0 44.53 3.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1248 1526 1.003051 ACGGGATCAGGCTAAGGGT 59.997 57.895 0.00 0.00 0.00 4.34 R
1408 1686 2.398803 TCGCTCTGAGATCCGAGTG 58.601 57.895 9.28 8.11 38.71 3.51 R
2283 2591 3.137728 ACCCCATAACTGTTACCTATGGC 59.862 47.826 12.53 0.00 40.47 4.40 R
3140 5897 0.108520 AGCAGATGCCCAAAAATGCG 60.109 50.000 0.14 0.00 43.38 4.73 R
4640 7456 0.108945 GGCAAATGCAGCTCAGAACC 60.109 55.000 7.80 0.00 44.36 3.62 R
5759 11005 1.191535 TGGAACGGAGGGAGTATGTG 58.808 55.000 0.00 0.00 0.00 3.21 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.139077 CACACCCTAACAGAAAGTGTCC 58.861 50.000 0.00 0.00 39.03 4.02
35 36 6.992715 CAGAAAGTGTCCTTCTAAGAGGAAAA 59.007 38.462 0.00 0.00 46.95 2.29
36 37 6.993308 AGAAAGTGTCCTTCTAAGAGGAAAAC 59.007 38.462 0.00 0.00 46.95 2.43
47 56 2.031465 GGAAAACCACGGCGGAGA 59.969 61.111 13.24 0.00 38.63 3.71
48 57 1.598685 GGAAAACCACGGCGGAGAA 60.599 57.895 13.24 0.00 38.63 2.87
94 103 1.154836 CTTTCGTCGAAGTGCGTGC 60.155 57.895 7.86 0.00 41.80 5.34
107 116 0.461870 TGCGTGCCGATAGAAAGCAT 60.462 50.000 0.00 0.00 39.04 3.79
147 165 4.263572 CCCTCACCGTGCACCCAA 62.264 66.667 12.15 0.00 0.00 4.12
198 216 1.173444 ACGAGCACACCGTTCTCTCT 61.173 55.000 0.00 0.00 36.83 3.10
223 241 2.176273 CGATCCGGACCGTACGTCT 61.176 63.158 11.07 0.00 41.64 4.18
232 250 2.767445 CCGTACGTCTCCGCATCCA 61.767 63.158 15.21 0.00 37.70 3.41
267 285 2.168496 GTACAGCACAGTACTCCTCCA 58.832 52.381 0.00 0.00 40.85 3.86
268 286 0.969894 ACAGCACAGTACTCCTCCAC 59.030 55.000 0.00 0.00 0.00 4.02
359 378 0.962356 CATCTGGAGCCGCACCTTTT 60.962 55.000 8.41 0.00 0.00 2.27
360 379 0.678048 ATCTGGAGCCGCACCTTTTC 60.678 55.000 8.41 0.00 0.00 2.29
361 380 2.282180 TGGAGCCGCACCTTTTCC 60.282 61.111 8.41 0.00 0.00 3.13
362 381 2.282180 GGAGCCGCACCTTTTCCA 60.282 61.111 0.00 0.00 0.00 3.53
371 390 2.203422 CCTTTTCCACCACCGCCA 60.203 61.111 0.00 0.00 0.00 5.69
372 391 1.606313 CCTTTTCCACCACCGCCAT 60.606 57.895 0.00 0.00 0.00 4.40
910 1178 3.049080 GCACATCCACTCCCCTCCC 62.049 68.421 0.00 0.00 0.00 4.30
911 1179 2.365635 ACATCCACTCCCCTCCCG 60.366 66.667 0.00 0.00 0.00 5.14
1062 1339 2.695970 CGAGGAGGAGGAGGAGGGT 61.696 68.421 0.00 0.00 0.00 4.34
1233 1510 3.792736 GGCACCCGAGGTATGGCA 61.793 66.667 10.85 0.00 32.11 4.92
1341 1619 3.323758 ATTCGTAAGCTGCGCCCCA 62.324 57.895 4.18 0.00 37.18 4.96
1357 1635 4.135153 CACGCTCCCTGGAGACCG 62.135 72.222 17.38 13.45 44.53 4.79
1365 1643 2.487428 CTGGAGACCGCAGAGTCG 59.513 66.667 0.00 0.00 41.83 4.18
1408 1686 4.133856 CGTGAGGAATTTGAGTGTGTTC 57.866 45.455 0.00 0.00 0.00 3.18
1506 1784 3.478857 TCACTTCGCCTGAGGTTTAAA 57.521 42.857 0.00 0.00 31.04 1.52
1630 1916 3.485394 TCATTGCTGCTTTCTGTTGGTA 58.515 40.909 0.00 0.00 0.00 3.25
1657 1944 6.654161 CCCATGCTTTAAAATTTGGTGATTGA 59.346 34.615 0.00 0.00 0.00 2.57
1686 1973 1.278985 CAGGCTCTGATGTGGGTGTAA 59.721 52.381 0.00 0.00 32.44 2.41
1753 2047 2.885135 TGGCTTGGATTGTGATGACT 57.115 45.000 0.00 0.00 0.00 3.41
1794 2088 8.659925 AGTGTGAATTTGACATTTTAATTGCA 57.340 26.923 0.00 0.00 0.00 4.08
2039 2336 6.459670 TTTCTAATGTCGGTGTCTAGCATA 57.540 37.500 0.00 0.00 0.00 3.14
2040 2337 6.459670 TTCTAATGTCGGTGTCTAGCATAA 57.540 37.500 0.00 0.00 0.00 1.90
2120 2426 1.228552 AAGCTGTGCCGTTTCCCAT 60.229 52.632 0.00 0.00 0.00 4.00
2251 2559 8.353423 ACTAAACATTGTCTTAGGATGCAAAT 57.647 30.769 16.26 0.00 30.74 2.32
2257 2565 7.611467 ACATTGTCTTAGGATGCAAATACTTGA 59.389 33.333 0.00 0.00 34.14 3.02
2279 2587 9.101655 CTTGAAAATTCAAATTCCAAAGTGAGT 57.898 29.630 9.63 0.00 45.61 3.41
2280 2588 8.422973 TGAAAATTCAAATTCCAAAGTGAGTG 57.577 30.769 0.00 0.00 33.55 3.51
2283 2591 4.916983 TCAAATTCCAAAGTGAGTGGTG 57.083 40.909 0.00 0.00 37.43 4.17
2605 3050 5.448632 CCAAGTAGTGTCTTTTTGTGACCAC 60.449 44.000 0.00 0.00 33.83 4.16
2639 3084 3.187842 GGTATCCTTCAAACGTGGTTCAC 59.812 47.826 0.00 0.00 0.00 3.18
2652 3097 1.906574 TGGTTCACACATACTCCCTCC 59.093 52.381 0.00 0.00 0.00 4.30
2653 3098 1.134788 GGTTCACACATACTCCCTCCG 60.135 57.143 0.00 0.00 0.00 4.63
2654 3099 1.549170 GTTCACACATACTCCCTCCGT 59.451 52.381 0.00 0.00 0.00 4.69
2655 3100 1.933021 TCACACATACTCCCTCCGTT 58.067 50.000 0.00 0.00 0.00 4.44
2656 3101 1.822990 TCACACATACTCCCTCCGTTC 59.177 52.381 0.00 0.00 0.00 3.95
2657 3102 1.134788 CACACATACTCCCTCCGTTCC 60.135 57.143 0.00 0.00 0.00 3.62
2658 3103 1.191535 CACATACTCCCTCCGTTCCA 58.808 55.000 0.00 0.00 0.00 3.53
2659 3104 1.553248 CACATACTCCCTCCGTTCCAA 59.447 52.381 0.00 0.00 0.00 3.53
2660 3105 2.027561 CACATACTCCCTCCGTTCCAAA 60.028 50.000 0.00 0.00 0.00 3.28
2661 3106 2.640826 ACATACTCCCTCCGTTCCAAAA 59.359 45.455 0.00 0.00 0.00 2.44
2662 3107 3.265995 ACATACTCCCTCCGTTCCAAAAT 59.734 43.478 0.00 0.00 0.00 1.82
2663 3108 4.472108 ACATACTCCCTCCGTTCCAAAATA 59.528 41.667 0.00 0.00 0.00 1.40
2664 3109 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
2665 3110 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
2666 3111 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
2667 3112 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
2668 3113 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
2669 3114 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
2670 3115 4.384208 CCCTCCGTTCCAAAATAGATGACT 60.384 45.833 0.00 0.00 0.00 3.41
2671 3116 4.811557 CCTCCGTTCCAAAATAGATGACTC 59.188 45.833 0.00 0.00 0.00 3.36
2672 3117 5.414789 TCCGTTCCAAAATAGATGACTCA 57.585 39.130 0.00 0.00 0.00 3.41
2673 3118 5.800296 TCCGTTCCAAAATAGATGACTCAA 58.200 37.500 0.00 0.00 0.00 3.02
2674 3119 5.642063 TCCGTTCCAAAATAGATGACTCAAC 59.358 40.000 0.00 0.00 0.00 3.18
2675 3120 5.643777 CCGTTCCAAAATAGATGACTCAACT 59.356 40.000 0.00 0.00 0.00 3.16
2676 3121 6.149474 CCGTTCCAAAATAGATGACTCAACTT 59.851 38.462 0.00 0.00 0.00 2.66
2677 3122 7.308589 CCGTTCCAAAATAGATGACTCAACTTT 60.309 37.037 0.00 0.00 0.00 2.66
2678 3123 7.535258 CGTTCCAAAATAGATGACTCAACTTTG 59.465 37.037 0.00 0.00 0.00 2.77
2679 3124 8.352942 GTTCCAAAATAGATGACTCAACTTTGT 58.647 33.333 0.00 0.00 0.00 2.83
2680 3125 9.567776 TTCCAAAATAGATGACTCAACTTTGTA 57.432 29.630 0.00 0.00 0.00 2.41
2681 3126 9.739276 TCCAAAATAGATGACTCAACTTTGTAT 57.261 29.630 0.00 0.00 0.00 2.29
2690 3135 9.530129 GATGACTCAACTTTGTATTAACTTTCG 57.470 33.333 0.00 0.00 0.00 3.46
2691 3136 8.428186 TGACTCAACTTTGTATTAACTTTCGT 57.572 30.769 0.00 0.00 0.00 3.85
2692 3137 9.531942 TGACTCAACTTTGTATTAACTTTCGTA 57.468 29.630 0.00 0.00 0.00 3.43
2693 3138 9.789029 GACTCAACTTTGTATTAACTTTCGTAC 57.211 33.333 0.00 0.00 0.00 3.67
2694 3139 9.316730 ACTCAACTTTGTATTAACTTTCGTACA 57.683 29.630 0.00 0.00 0.00 2.90
2695 3140 9.577003 CTCAACTTTGTATTAACTTTCGTACAC 57.423 33.333 0.00 0.00 0.00 2.90
2696 3141 9.096160 TCAACTTTGTATTAACTTTCGTACACA 57.904 29.630 0.00 0.00 0.00 3.72
2697 3142 9.365311 CAACTTTGTATTAACTTTCGTACACAG 57.635 33.333 0.00 0.00 33.38 3.66
2698 3143 8.652810 ACTTTGTATTAACTTTCGTACACAGT 57.347 30.769 0.00 0.00 34.82 3.55
2699 3144 9.101655 ACTTTGTATTAACTTTCGTACACAGTT 57.898 29.630 6.57 6.57 35.64 3.16
2700 3145 9.365311 CTTTGTATTAACTTTCGTACACAGTTG 57.635 33.333 10.26 0.00 32.88 3.16
2701 3146 7.410800 TGTATTAACTTTCGTACACAGTTGG 57.589 36.000 10.26 0.00 32.88 3.77
2702 3147 5.934935 ATTAACTTTCGTACACAGTTGGG 57.065 39.130 10.26 0.00 32.88 4.12
2703 3148 2.994186 ACTTTCGTACACAGTTGGGT 57.006 45.000 0.00 0.00 34.93 4.51
2704 3149 2.830104 ACTTTCGTACACAGTTGGGTC 58.170 47.619 0.00 0.00 31.69 4.46
2705 3150 2.168936 ACTTTCGTACACAGTTGGGTCA 59.831 45.455 0.00 0.00 31.69 4.02
2706 3151 3.181458 ACTTTCGTACACAGTTGGGTCAT 60.181 43.478 0.00 0.00 31.69 3.06
2707 3152 2.736144 TCGTACACAGTTGGGTCATC 57.264 50.000 0.00 0.00 31.69 2.92
2708 3153 2.244695 TCGTACACAGTTGGGTCATCT 58.755 47.619 0.00 0.00 31.69 2.90
2709 3154 3.423749 TCGTACACAGTTGGGTCATCTA 58.576 45.455 0.00 0.00 31.69 1.98
2710 3155 4.021229 TCGTACACAGTTGGGTCATCTAT 58.979 43.478 0.00 0.00 31.69 1.98
2711 3156 4.464951 TCGTACACAGTTGGGTCATCTATT 59.535 41.667 0.00 0.00 31.69 1.73
2712 3157 5.046878 TCGTACACAGTTGGGTCATCTATTT 60.047 40.000 0.00 0.00 31.69 1.40
2713 3158 5.642063 CGTACACAGTTGGGTCATCTATTTT 59.358 40.000 0.00 0.00 31.69 1.82
2714 3159 5.964958 ACACAGTTGGGTCATCTATTTTG 57.035 39.130 0.00 0.00 0.00 2.44
2715 3160 4.766891 ACACAGTTGGGTCATCTATTTTGG 59.233 41.667 0.00 0.00 0.00 3.28
2716 3161 5.009631 CACAGTTGGGTCATCTATTTTGGA 58.990 41.667 0.00 0.00 0.00 3.53
2717 3162 5.476599 CACAGTTGGGTCATCTATTTTGGAA 59.523 40.000 0.00 0.00 0.00 3.53
2718 3163 5.476945 ACAGTTGGGTCATCTATTTTGGAAC 59.523 40.000 0.00 0.00 0.00 3.62
2719 3164 4.700213 AGTTGGGTCATCTATTTTGGAACG 59.300 41.667 0.00 0.00 0.00 3.95
2720 3165 3.616219 TGGGTCATCTATTTTGGAACGG 58.384 45.455 0.00 0.00 0.00 4.44
2721 3166 3.264706 TGGGTCATCTATTTTGGAACGGA 59.735 43.478 0.00 0.00 0.00 4.69
2722 3167 3.877508 GGGTCATCTATTTTGGAACGGAG 59.122 47.826 0.00 0.00 0.00 4.63
2723 3168 3.877508 GGTCATCTATTTTGGAACGGAGG 59.122 47.826 0.00 0.00 0.00 4.30
2724 3169 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
2725 3170 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
2726 3171 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
2727 3172 3.178865 TCTATTTTGGAACGGAGGGAGT 58.821 45.455 0.00 0.00 0.00 3.85
2728 3173 4.355549 TCTATTTTGGAACGGAGGGAGTA 58.644 43.478 0.00 0.00 0.00 2.59
2766 3228 7.595130 CCCTTTTTCAATAGTTTAGCAGTTCAC 59.405 37.037 0.00 0.00 0.00 3.18
2769 3231 6.462073 TTCAATAGTTTAGCAGTTCACGAC 57.538 37.500 0.00 0.00 0.00 4.34
2838 3300 6.769822 ACTCTATGGCTATCACCAGAAATTTG 59.230 38.462 0.00 0.00 44.71 2.32
2847 3309 9.162764 GCTATCACCAGAAATTTGTAGAACTTA 57.837 33.333 0.00 0.00 0.00 2.24
2897 3363 0.320771 TTTCTCGGAAGACTGCCAGC 60.321 55.000 0.00 0.00 35.39 4.85
2967 5724 1.066257 CAGGCGCACAAAACTGCTT 59.934 52.632 10.83 0.00 34.77 3.91
2982 5739 0.520412 TGCTTCGCGCGCTAAAATTC 60.520 50.000 30.48 13.41 43.27 2.17
2983 5740 1.512913 GCTTCGCGCGCTAAAATTCG 61.513 55.000 30.48 13.05 0.00 3.34
3016 5773 1.675801 TGGACAGCTCCAGCAGAAG 59.324 57.895 0.48 0.00 42.15 2.85
3033 5790 4.641954 CAGAAGCTGTAAAATAGTGCACG 58.358 43.478 12.01 0.00 0.00 5.34
3035 5792 1.393539 AGCTGTAAAATAGTGCACGCG 59.606 47.619 12.01 3.53 0.00 6.01
3064 5821 0.109319 ATTGGGCACGCGCTAAAAAG 60.109 50.000 5.73 0.00 38.60 2.27
3088 5845 4.110482 GCTATCAGAAGCTGCAAATTTGG 58.890 43.478 19.47 5.27 39.50 3.28
3094 5851 2.434709 CTGCAAATTTGGGGCGCC 60.435 61.111 21.18 21.18 0.00 6.53
3100 5857 2.237534 AAATTTGGGGCGCCGGATTG 62.238 55.000 22.54 0.00 0.00 2.67
3125 5882 0.780002 GCTTCACAATTTGCACTGCG 59.220 50.000 0.00 0.00 0.00 5.18
3127 5884 1.782569 CTTCACAATTTGCACTGCGTG 59.217 47.619 0.00 4.61 36.51 5.34
3151 5908 3.873026 TTGGGCGCGCATTTTTGGG 62.873 57.895 34.42 0.00 0.00 4.12
3182 5939 0.319469 CCAATGTTGGGTTTGACGCC 60.319 55.000 3.80 0.00 44.70 5.68
3189 5946 2.068834 TGGGTTTGACGCCCTAAAAA 57.931 45.000 1.85 0.00 46.22 1.94
3195 5952 4.321378 GGTTTGACGCCCTAAAAATGCTAA 60.321 41.667 0.00 0.00 0.00 3.09
3211 5968 1.202143 GCTAAAGTGGCGCGCTAAAAT 60.202 47.619 32.29 16.17 0.00 1.82
3229 5986 4.731915 AAATTATTTTAGCGCGCGAAAC 57.268 36.364 33.79 16.84 0.00 2.78
3239 5996 1.534028 CGCGCGAAACTTTTATGCAT 58.466 45.000 28.94 3.79 0.00 3.96
3297 6054 2.413634 GCAACCAATTCCTTAACGACCG 60.414 50.000 0.00 0.00 0.00 4.79
3397 6154 9.979578 TTTCAAGATTGTGTGCTTGTTTTATAT 57.020 25.926 0.00 0.00 41.60 0.86
3619 6435 9.321562 CCCATACACGTAGTATTTGAACTAAAT 57.678 33.333 7.61 0.00 41.61 1.40
3777 6593 1.775869 GCTTCTTGAGCCTTGTTTGC 58.224 50.000 0.00 0.00 46.01 3.68
4042 6858 3.688673 GCAAGCTTTCAAGAGTAGCTGAT 59.311 43.478 0.00 0.00 44.05 2.90
4107 6923 1.413445 AGTTTGTGGTGCATTGCATGT 59.587 42.857 15.49 0.00 41.91 3.21
4207 7023 2.268298 TCGCGAGCTTTGATTAGAACC 58.732 47.619 3.71 0.00 0.00 3.62
4222 7038 5.661056 TTAGAACCTCACATTCATCTCGT 57.339 39.130 0.00 0.00 0.00 4.18
4240 7056 0.596577 GTTCGGGAGTTTTTGAGGGC 59.403 55.000 0.00 0.00 0.00 5.19
4383 7199 1.006337 GCAATGGGCACGCAAAGAA 60.006 52.632 0.00 0.00 43.97 2.52
4393 7209 3.234386 GCACGCAAAGAAGATTACAACC 58.766 45.455 0.00 0.00 0.00 3.77
4486 7302 0.042731 CTCTTGGTGAGGACCCCCTA 59.957 60.000 0.00 0.00 44.53 3.53
4640 7456 3.805971 TGCTACTGATCATCGAGCAATTG 59.194 43.478 18.76 0.00 40.07 2.32
4906 7722 5.104235 CCATATCTGCATGATATCAAGGGGA 60.104 44.000 9.99 6.86 44.20 4.81
4960 7776 2.828520 TGCAGTTTTGGGTCAGTTTTCA 59.171 40.909 0.00 0.00 0.00 2.69
4997 7813 3.252974 AGGCATCCTTTCTACAGAACG 57.747 47.619 0.00 0.00 33.13 3.95
5061 7877 8.839343 AGATCATATACTGATAGAATCTCAGCG 58.161 37.037 0.00 0.00 44.83 5.18
5086 7902 7.928706 CGAAAAGATACAATGAGTCTAATCCCT 59.071 37.037 0.00 0.00 0.00 4.20
5087 7903 8.970859 AAAAGATACAATGAGTCTAATCCCTG 57.029 34.615 0.00 0.00 0.00 4.45
5251 8068 4.583871 AGAAGATTAACCAGAAGCACCAG 58.416 43.478 0.00 0.00 0.00 4.00
5292 8112 5.052895 CGTGTTGTACCATTTTCGTTTGAAC 60.053 40.000 0.00 0.00 32.71 3.18
5325 8145 4.021916 AGTTATCCTAGCGTTGTAGGTGT 58.978 43.478 7.31 2.42 40.64 4.16
5377 8197 8.871686 AAATGTTTTAAGTGGTTGTCTCATTC 57.128 30.769 0.00 0.00 0.00 2.67
5378 8198 7.823745 ATGTTTTAAGTGGTTGTCTCATTCT 57.176 32.000 0.00 0.00 0.00 2.40
5379 8199 7.259290 TGTTTTAAGTGGTTGTCTCATTCTC 57.741 36.000 0.00 0.00 0.00 2.87
5380 8200 6.826231 TGTTTTAAGTGGTTGTCTCATTCTCA 59.174 34.615 0.00 0.00 0.00 3.27
5381 8201 7.502226 TGTTTTAAGTGGTTGTCTCATTCTCAT 59.498 33.333 0.00 0.00 0.00 2.90
5412 8232 6.380846 AGCAATTTTGGTATCATTCCAGCTTA 59.619 34.615 0.00 0.00 37.09 3.09
5424 8244 1.899814 TCCAGCTTATGTTCGTCCTGT 59.100 47.619 0.00 0.00 0.00 4.00
5429 8249 1.732259 CTTATGTTCGTCCTGTGTGGC 59.268 52.381 0.00 0.00 35.26 5.01
5431 8251 3.712881 GTTCGTCCTGTGTGGCGC 61.713 66.667 0.00 0.00 36.05 6.53
5432 8252 3.923864 TTCGTCCTGTGTGGCGCT 61.924 61.111 7.64 0.00 36.05 5.92
5433 8253 2.566570 TTCGTCCTGTGTGGCGCTA 61.567 57.895 7.64 0.00 36.05 4.26
5434 8254 1.884075 TTCGTCCTGTGTGGCGCTAT 61.884 55.000 7.64 0.00 36.05 2.97
5436 8256 1.421410 CGTCCTGTGTGGCGCTATTC 61.421 60.000 7.64 0.00 35.26 1.75
5437 8257 1.153647 TCCTGTGTGGCGCTATTCG 60.154 57.895 7.64 0.00 42.12 3.34
5491 8333 4.299978 GGAAGTCTACATCCATAGCGTTC 58.700 47.826 0.00 0.00 34.11 3.95
5507 10722 3.196685 AGCGTTCCTCTCTTAAGAGCATT 59.803 43.478 25.04 4.44 46.59 3.56
5523 10738 3.698040 GAGCATTTCCAACAGGTGATGAT 59.302 43.478 0.00 0.00 0.00 2.45
5524 10739 4.091549 AGCATTTCCAACAGGTGATGATT 58.908 39.130 0.00 0.00 0.00 2.57
5525 10740 4.529377 AGCATTTCCAACAGGTGATGATTT 59.471 37.500 0.00 0.00 0.00 2.17
5526 10741 5.012354 AGCATTTCCAACAGGTGATGATTTT 59.988 36.000 0.00 0.00 0.00 1.82
5527 10742 5.702209 GCATTTCCAACAGGTGATGATTTTT 59.298 36.000 0.00 0.00 0.00 1.94
5602 10845 9.251792 CTCATGTCAAATGAATCTGAAACAAAA 57.748 29.630 0.00 0.00 0.00 2.44
5639 10884 9.804758 AAAGTACTAGTTACATAGTTCATCAGC 57.195 33.333 0.00 0.00 37.24 4.26
5665 10910 7.481798 CCGACAAGCTTAAATTCAACATAGTTC 59.518 37.037 0.00 0.00 0.00 3.01
5666 10911 8.015087 CGACAAGCTTAAATTCAACATAGTTCA 58.985 33.333 0.00 0.00 0.00 3.18
5679 10925 9.500785 TTCAACATAGTTCATCACACATAAGAA 57.499 29.630 0.00 0.00 0.00 2.52
5708 10954 8.975410 ACACAAAGTTCATCATAAATGACATG 57.025 30.769 0.00 0.00 40.03 3.21
5709 10955 8.795513 ACACAAAGTTCATCATAAATGACATGA 58.204 29.630 0.00 0.00 40.03 3.07
5710 10956 9.628746 CACAAAGTTCATCATAAATGACATGAA 57.371 29.630 0.00 5.34 40.03 2.57
5711 10957 9.850628 ACAAAGTTCATCATAAATGACATGAAG 57.149 29.630 0.00 2.46 36.82 3.02
5712 10958 8.804743 CAAAGTTCATCATAAATGACATGAAGC 58.195 33.333 0.00 5.59 36.82 3.86
5713 10959 7.634671 AGTTCATCATAAATGACATGAAGCA 57.365 32.000 0.00 0.00 36.82 3.91
5714 10960 7.478322 AGTTCATCATAAATGACATGAAGCAC 58.522 34.615 0.00 1.23 36.82 4.40
5715 10961 7.121611 AGTTCATCATAAATGACATGAAGCACA 59.878 33.333 0.00 0.00 36.82 4.57
5716 10962 7.393841 TCATCATAAATGACATGAAGCACAA 57.606 32.000 0.00 0.00 40.03 3.33
5717 10963 7.252708 TCATCATAAATGACATGAAGCACAAC 58.747 34.615 0.00 0.00 40.03 3.32
5718 10964 6.822667 TCATAAATGACATGAAGCACAACT 57.177 33.333 0.00 0.00 29.55 3.16
5719 10965 7.920160 TCATAAATGACATGAAGCACAACTA 57.080 32.000 0.00 0.00 29.55 2.24
5720 10966 7.977904 TCATAAATGACATGAAGCACAACTAG 58.022 34.615 0.00 0.00 29.55 2.57
5721 10967 7.607607 TCATAAATGACATGAAGCACAACTAGT 59.392 33.333 0.00 0.00 29.55 2.57
5722 10968 6.639632 AAATGACATGAAGCACAACTAGTT 57.360 33.333 1.12 1.12 0.00 2.24
5723 10969 5.869753 ATGACATGAAGCACAACTAGTTC 57.130 39.130 4.77 0.00 0.00 3.01
5724 10970 4.702831 TGACATGAAGCACAACTAGTTCA 58.297 39.130 4.77 0.00 33.61 3.18
5725 10971 4.751600 TGACATGAAGCACAACTAGTTCAG 59.248 41.667 4.77 2.22 32.64 3.02
5726 10972 4.708177 ACATGAAGCACAACTAGTTCAGT 58.292 39.130 4.77 0.00 40.05 3.41
5728 10974 5.237344 ACATGAAGCACAACTAGTTCAGTTC 59.763 40.000 4.77 7.26 44.48 3.01
5729 10975 4.765273 TGAAGCACAACTAGTTCAGTTCA 58.235 39.130 4.77 9.63 44.48 3.18
5730 10976 5.368145 TGAAGCACAACTAGTTCAGTTCAT 58.632 37.500 4.77 0.00 44.48 2.57
5731 10977 5.466728 TGAAGCACAACTAGTTCAGTTCATC 59.533 40.000 4.77 0.08 44.48 2.92
5732 10978 4.960938 AGCACAACTAGTTCAGTTCATCA 58.039 39.130 4.77 0.00 44.48 3.07
5733 10979 5.368145 AGCACAACTAGTTCAGTTCATCAA 58.632 37.500 4.77 0.00 44.48 2.57
5734 10980 6.000219 AGCACAACTAGTTCAGTTCATCAAT 59.000 36.000 4.77 0.00 44.48 2.57
5735 10981 6.148480 AGCACAACTAGTTCAGTTCATCAATC 59.852 38.462 4.77 0.00 44.48 2.67
5736 10982 6.528826 CACAACTAGTTCAGTTCATCAATCG 58.471 40.000 4.77 0.00 44.48 3.34
5737 10983 6.366061 CACAACTAGTTCAGTTCATCAATCGA 59.634 38.462 4.77 0.00 44.48 3.59
5738 10984 6.366332 ACAACTAGTTCAGTTCATCAATCGAC 59.634 38.462 4.77 0.00 44.48 4.20
5739 10985 6.025749 ACTAGTTCAGTTCATCAATCGACA 57.974 37.500 0.00 0.00 31.59 4.35
5740 10986 6.455647 ACTAGTTCAGTTCATCAATCGACAA 58.544 36.000 0.00 0.00 31.59 3.18
5741 10987 5.852738 AGTTCAGTTCATCAATCGACAAG 57.147 39.130 0.00 0.00 0.00 3.16
5742 10988 5.300752 AGTTCAGTTCATCAATCGACAAGT 58.699 37.500 0.00 0.00 0.00 3.16
5743 10989 5.406780 AGTTCAGTTCATCAATCGACAAGTC 59.593 40.000 0.00 0.00 0.00 3.01
5744 10990 4.881920 TCAGTTCATCAATCGACAAGTCA 58.118 39.130 0.72 0.00 0.00 3.41
5745 10991 5.296748 TCAGTTCATCAATCGACAAGTCAA 58.703 37.500 0.72 0.00 0.00 3.18
5746 10992 5.177511 TCAGTTCATCAATCGACAAGTCAAC 59.822 40.000 0.72 0.00 0.00 3.18
5747 10993 5.050159 CAGTTCATCAATCGACAAGTCAACA 60.050 40.000 0.72 0.00 0.00 3.33
5748 10994 5.702670 AGTTCATCAATCGACAAGTCAACAT 59.297 36.000 0.72 0.00 0.00 2.71
5749 10995 6.873605 AGTTCATCAATCGACAAGTCAACATA 59.126 34.615 0.72 0.00 0.00 2.29
5750 10996 6.892310 TCATCAATCGACAAGTCAACATAG 57.108 37.500 0.72 0.00 0.00 2.23
5751 10997 6.398095 TCATCAATCGACAAGTCAACATAGT 58.602 36.000 0.72 0.00 0.00 2.12
5752 10998 6.873605 TCATCAATCGACAAGTCAACATAGTT 59.126 34.615 0.72 0.00 0.00 2.24
5753 10999 6.466308 TCAATCGACAAGTCAACATAGTTG 57.534 37.500 3.58 3.58 36.14 3.16
5754 11000 5.989168 TCAATCGACAAGTCAACATAGTTGT 59.011 36.000 9.43 0.00 43.92 3.32
5756 11002 5.900339 TCGACAAGTCAACATAGTTGTTC 57.100 39.130 9.43 5.17 44.24 3.18
5757 11003 5.353111 TCGACAAGTCAACATAGTTGTTCA 58.647 37.500 9.43 0.00 44.24 3.18
5758 11004 5.989168 TCGACAAGTCAACATAGTTGTTCAT 59.011 36.000 9.43 0.00 44.24 2.57
5759 11005 6.145534 TCGACAAGTCAACATAGTTGTTCATC 59.854 38.462 9.43 3.05 44.24 2.92
5760 11006 6.073819 CGACAAGTCAACATAGTTGTTCATCA 60.074 38.462 9.43 0.00 44.24 3.07
5761 11007 6.959361 ACAAGTCAACATAGTTGTTCATCAC 58.041 36.000 9.43 0.51 44.24 3.06
5762 11008 6.542005 ACAAGTCAACATAGTTGTTCATCACA 59.458 34.615 9.43 0.00 44.24 3.58
5763 11009 7.229306 ACAAGTCAACATAGTTGTTCATCACAT 59.771 33.333 9.43 0.00 44.24 3.21
5764 11010 8.720562 CAAGTCAACATAGTTGTTCATCACATA 58.279 33.333 9.43 0.00 44.24 2.29
5765 11011 8.256611 AGTCAACATAGTTGTTCATCACATAC 57.743 34.615 9.43 0.00 44.24 2.39
5766 11012 8.097038 AGTCAACATAGTTGTTCATCACATACT 58.903 33.333 9.43 0.12 44.24 2.12
5767 11013 8.383619 GTCAACATAGTTGTTCATCACATACTC 58.616 37.037 9.43 0.00 44.24 2.59
5768 11014 7.549134 TCAACATAGTTGTTCATCACATACTCC 59.451 37.037 9.43 0.00 44.24 3.85
5769 11015 6.349300 ACATAGTTGTTCATCACATACTCCC 58.651 40.000 0.00 0.00 34.43 4.30
5770 11016 6.156949 ACATAGTTGTTCATCACATACTCCCT 59.843 38.462 0.00 0.00 34.43 4.20
5771 11017 5.091261 AGTTGTTCATCACATACTCCCTC 57.909 43.478 0.00 0.00 34.43 4.30
5772 11018 4.080863 AGTTGTTCATCACATACTCCCTCC 60.081 45.833 0.00 0.00 34.43 4.30
5773 11019 2.430694 TGTTCATCACATACTCCCTCCG 59.569 50.000 0.00 0.00 0.00 4.63
5774 11020 2.431057 GTTCATCACATACTCCCTCCGT 59.569 50.000 0.00 0.00 0.00 4.69
5775 11021 2.747177 TCATCACATACTCCCTCCGTT 58.253 47.619 0.00 0.00 0.00 4.44
5776 11022 2.693591 TCATCACATACTCCCTCCGTTC 59.306 50.000 0.00 0.00 0.00 3.95
5777 11023 1.481871 TCACATACTCCCTCCGTTCC 58.518 55.000 0.00 0.00 0.00 3.62
5778 11024 1.191535 CACATACTCCCTCCGTTCCA 58.808 55.000 0.00 0.00 0.00 3.53
5779 11025 1.553248 CACATACTCCCTCCGTTCCAA 59.447 52.381 0.00 0.00 0.00 3.53
5780 11026 2.027561 CACATACTCCCTCCGTTCCAAA 60.028 50.000 0.00 0.00 0.00 3.28
5781 11027 2.640826 ACATACTCCCTCCGTTCCAAAA 59.359 45.455 0.00 0.00 0.00 2.44
5782 11028 3.265995 ACATACTCCCTCCGTTCCAAAAT 59.734 43.478 0.00 0.00 0.00 1.82
5783 11029 4.472108 ACATACTCCCTCCGTTCCAAAATA 59.528 41.667 0.00 0.00 0.00 1.40
5784 11030 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
5785 11031 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
5786 11032 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
5787 11033 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
5788 11034 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
5789 11035 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
5790 11036 3.877508 CCTCCGTTCCAAAATAGATGACC 59.122 47.826 0.00 0.00 0.00 4.02
5791 11037 3.877508 CTCCGTTCCAAAATAGATGACCC 59.122 47.826 0.00 0.00 0.00 4.46
5792 11038 3.264706 TCCGTTCCAAAATAGATGACCCA 59.735 43.478 0.00 0.00 0.00 4.51
5793 11039 4.013728 CCGTTCCAAAATAGATGACCCAA 58.986 43.478 0.00 0.00 0.00 4.12
5794 11040 4.644685 CCGTTCCAAAATAGATGACCCAAT 59.355 41.667 0.00 0.00 0.00 3.16
5795 11041 5.127031 CCGTTCCAAAATAGATGACCCAATT 59.873 40.000 0.00 0.00 0.00 2.32
5796 11042 6.350949 CCGTTCCAAAATAGATGACCCAATTT 60.351 38.462 0.00 0.00 0.00 1.82
5797 11043 7.096551 CGTTCCAAAATAGATGACCCAATTTT 58.903 34.615 0.00 0.00 33.07 1.82
5798 11044 8.247562 CGTTCCAAAATAGATGACCCAATTTTA 58.752 33.333 0.00 0.00 31.97 1.52
5846 11092 9.003658 AGTACAAAGTTGAGTCATCTATTTTGG 57.996 33.333 14.35 0.00 40.00 3.28
5847 11093 8.999431 GTACAAAGTTGAGTCATCTATTTTGGA 58.001 33.333 14.35 6.88 40.00 3.53
5848 11094 8.463930 ACAAAGTTGAGTCATCTATTTTGGAA 57.536 30.769 14.35 0.00 40.00 3.53
5849 11095 8.352942 ACAAAGTTGAGTCATCTATTTTGGAAC 58.647 33.333 14.35 0.00 40.00 3.62
5850 11096 6.727824 AGTTGAGTCATCTATTTTGGAACG 57.272 37.500 1.70 0.00 0.00 3.95
5851 11097 5.643777 AGTTGAGTCATCTATTTTGGAACGG 59.356 40.000 1.70 0.00 0.00 4.44
5852 11098 5.414789 TGAGTCATCTATTTTGGAACGGA 57.585 39.130 0.00 0.00 0.00 4.69
5853 11099 5.419542 TGAGTCATCTATTTTGGAACGGAG 58.580 41.667 0.00 0.00 0.00 4.63
5854 11100 4.770795 AGTCATCTATTTTGGAACGGAGG 58.229 43.478 0.00 0.00 0.00 4.30
5855 11101 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
5856 11102 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
5857 11103 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
5858 11104 3.178865 TCTATTTTGGAACGGAGGGAGT 58.821 45.455 0.00 0.00 0.00 3.85
5859 11105 4.355549 TCTATTTTGGAACGGAGGGAGTA 58.644 43.478 0.00 0.00 0.00 2.59
5860 11106 4.966805 TCTATTTTGGAACGGAGGGAGTAT 59.033 41.667 0.00 0.00 0.00 2.12
5861 11107 6.138263 TCTATTTTGGAACGGAGGGAGTATA 58.862 40.000 0.00 0.00 0.00 1.47
5862 11108 5.703730 ATTTTGGAACGGAGGGAGTATAA 57.296 39.130 0.00 0.00 0.00 0.98
5863 11109 4.748277 TTTGGAACGGAGGGAGTATAAG 57.252 45.455 0.00 0.00 0.00 1.73
5864 11110 3.675348 TGGAACGGAGGGAGTATAAGA 57.325 47.619 0.00 0.00 0.00 2.10
5865 11111 3.294214 TGGAACGGAGGGAGTATAAGAC 58.706 50.000 0.00 0.00 0.00 3.01
5866 11112 3.294214 GGAACGGAGGGAGTATAAGACA 58.706 50.000 0.00 0.00 0.00 3.41
5867 11113 3.896272 GGAACGGAGGGAGTATAAGACAT 59.104 47.826 0.00 0.00 0.00 3.06
5868 11114 5.075493 GGAACGGAGGGAGTATAAGACATA 58.925 45.833 0.00 0.00 0.00 2.29
5869 11115 5.537674 GGAACGGAGGGAGTATAAGACATAA 59.462 44.000 0.00 0.00 0.00 1.90
5870 11116 6.402456 AACGGAGGGAGTATAAGACATAAC 57.598 41.667 0.00 0.00 0.00 1.89
5871 11117 5.452255 ACGGAGGGAGTATAAGACATAACA 58.548 41.667 0.00 0.00 0.00 2.41
5872 11118 5.895534 ACGGAGGGAGTATAAGACATAACAA 59.104 40.000 0.00 0.00 0.00 2.83
5873 11119 6.381994 ACGGAGGGAGTATAAGACATAACAAA 59.618 38.462 0.00 0.00 0.00 2.83
5874 11120 7.093201 ACGGAGGGAGTATAAGACATAACAAAA 60.093 37.037 0.00 0.00 0.00 2.44
5875 11121 7.767198 CGGAGGGAGTATAAGACATAACAAAAA 59.233 37.037 0.00 0.00 0.00 1.94
5876 11122 9.110502 GGAGGGAGTATAAGACATAACAAAAAG 57.889 37.037 0.00 0.00 0.00 2.27
5877 11123 9.668497 GAGGGAGTATAAGACATAACAAAAAGT 57.332 33.333 0.00 0.00 0.00 2.66
5924 11170 2.610438 AGTTCTGTTGCCCATTCCAT 57.390 45.000 0.00 0.00 0.00 3.41
5927 11173 2.299867 GTTCTGTTGCCCATTCCATGTT 59.700 45.455 0.00 0.00 0.00 2.71
5948 11194 6.571605 TGTTCATCACTCAATGAGATCTCTC 58.428 40.000 22.95 0.00 41.91 3.20
5962 11208 4.488126 GATCTCTCTGAAGATCCTCACG 57.512 50.000 13.98 0.00 43.91 4.35
5967 11213 4.193090 TCTCTGAAGATCCTCACGAGTAC 58.807 47.826 14.90 0.00 0.00 2.73
5969 11215 3.054287 TCTGAAGATCCTCACGAGTACCT 60.054 47.826 0.00 0.00 0.00 3.08
5987 11233 7.447374 AGTACCTTGATCTCGAATCTCATAG 57.553 40.000 0.00 3.27 0.00 2.23
6003 11249 7.608308 ATCTCATAGTGAACTTGAAGAAAGC 57.392 36.000 0.00 0.00 39.76 3.51
6004 11250 6.524734 TCTCATAGTGAACTTGAAGAAAGCA 58.475 36.000 0.00 0.00 39.76 3.91
6006 11252 7.332926 TCTCATAGTGAACTTGAAGAAAGCATC 59.667 37.037 0.00 0.00 39.76 3.91
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.139077 GGACACTTTCTGTTAGGGTGTG 58.861 50.000 0.00 0.00 40.54 3.82
1 2 3.046374 AGGACACTTTCTGTTAGGGTGT 58.954 45.455 0.00 0.00 42.68 4.16
2 3 3.771577 AGGACACTTTCTGTTAGGGTG 57.228 47.619 0.00 0.00 31.03 4.61
3 4 3.974642 AGAAGGACACTTTCTGTTAGGGT 59.025 43.478 0.00 0.00 36.97 4.34
4 5 4.625607 AGAAGGACACTTTCTGTTAGGG 57.374 45.455 0.00 0.00 36.97 3.53
5 6 6.994221 TCTTAGAAGGACACTTTCTGTTAGG 58.006 40.000 6.43 0.00 36.97 2.69
6 7 7.039644 TCCTCTTAGAAGGACACTTTCTGTTAG 60.040 40.741 6.43 2.75 40.60 2.34
7 8 6.781014 TCCTCTTAGAAGGACACTTTCTGTTA 59.219 38.462 6.43 0.00 40.60 2.41
8 9 5.602978 TCCTCTTAGAAGGACACTTTCTGTT 59.397 40.000 6.43 0.00 40.60 3.16
9 10 5.148502 TCCTCTTAGAAGGACACTTTCTGT 58.851 41.667 6.43 0.00 40.60 3.41
10 11 5.730296 TCCTCTTAGAAGGACACTTTCTG 57.270 43.478 6.43 0.00 40.60 3.02
19 20 3.007614 CCGTGGTTTTCCTCTTAGAAGGA 59.992 47.826 0.00 0.00 43.84 3.36
21 22 2.742589 GCCGTGGTTTTCCTCTTAGAAG 59.257 50.000 0.00 0.00 41.38 2.85
35 36 3.782443 GGGATTCTCCGCCGTGGT 61.782 66.667 0.00 0.00 37.43 4.16
36 37 4.547367 GGGGATTCTCCGCCGTGG 62.547 72.222 0.00 0.00 43.03 4.94
47 56 2.589798 CGTGTATACGTGTGGGGATT 57.410 50.000 3.56 0.00 44.99 3.01
94 103 4.024556 GTGTTGGATCATGCTTTCTATCGG 60.025 45.833 0.00 0.00 0.00 4.18
107 116 1.347707 GAGTGGACTGGTGTTGGATCA 59.652 52.381 0.00 0.00 0.00 2.92
147 165 3.458189 CGACAGCGGATCTAGGAATTTT 58.542 45.455 0.00 0.00 0.00 1.82
204 222 2.125147 ACGTACGGTCCGGATCGA 60.125 61.111 41.82 23.02 38.51 3.59
259 277 2.154074 GGTTGGTGGGTGGAGGAGT 61.154 63.158 0.00 0.00 0.00 3.85
264 282 3.503839 GGTGGGTTGGTGGGTGGA 61.504 66.667 0.00 0.00 0.00 4.02
306 324 4.668118 ACGGTTGGTGCGGGTACG 62.668 66.667 0.00 0.00 44.63 3.67
406 674 1.588824 TATATAGGTGCGACGGGCCG 61.589 60.000 27.06 27.06 42.61 6.13
829 1097 4.764143 CCCCCGAGCCTTGATTTT 57.236 55.556 0.00 0.00 0.00 1.82
910 1178 2.259875 GGAGCAGACTCGTGGAGACG 62.260 65.000 0.00 0.00 44.48 4.18
911 1179 1.509004 GGAGCAGACTCGTGGAGAC 59.491 63.158 0.00 0.00 44.48 3.36
1215 1492 3.792736 GCCATACCTCGGGTGCCA 61.793 66.667 5.90 0.00 36.19 4.92
1241 1519 3.732849 AGGCTAAGGGTGCAGGGC 61.733 66.667 0.00 0.00 0.00 5.19
1245 1523 1.635817 GGGATCAGGCTAAGGGTGCA 61.636 60.000 0.00 0.00 0.00 4.57
1248 1526 1.003051 ACGGGATCAGGCTAAGGGT 59.997 57.895 0.00 0.00 0.00 4.34
1347 1625 2.888863 GACTCTGCGGTCTCCAGG 59.111 66.667 0.00 0.00 33.81 4.45
1408 1686 2.398803 TCGCTCTGAGATCCGAGTG 58.601 57.895 9.28 8.11 38.71 3.51
1486 1764 3.478857 TTTAAACCTCAGGCGAAGTGA 57.521 42.857 0.00 0.00 0.00 3.41
1506 1784 4.980573 TCACAGCAAACTACCACCTTAAT 58.019 39.130 0.00 0.00 0.00 1.40
1686 1973 3.837146 TGCATGGTTTGGTTAATGGACAT 59.163 39.130 0.00 0.00 0.00 3.06
1753 2047 5.164620 TCACACTTCCAAGAGATATTGCA 57.835 39.130 0.00 0.00 0.00 4.08
1794 2088 7.414098 CGCCTTTTATAGTCATACTGCAAAGTT 60.414 37.037 0.00 0.00 0.00 2.66
2039 2336 9.988815 AAATGATGAGCGACTATTTAGTATCTT 57.011 29.630 0.00 0.00 36.50 2.40
2115 2421 4.877378 AGTGTTGTACGAGTTTATGGGA 57.123 40.909 0.00 0.00 0.00 4.37
2257 2565 7.280652 CACCACTCACTTTGGAATTTGAATTTT 59.719 33.333 0.00 0.00 37.58 1.82
2279 2587 4.384757 CCATAACTGTTACCTATGGCACCA 60.385 45.833 1.73 0.00 36.62 4.17
2280 2588 4.134563 CCATAACTGTTACCTATGGCACC 58.865 47.826 1.73 0.00 36.62 5.01
2283 2591 3.137728 ACCCCATAACTGTTACCTATGGC 59.862 47.826 12.53 0.00 40.47 4.40
2605 3050 5.677319 TGAAGGATACCTTAACTGACAGG 57.323 43.478 7.51 0.00 44.82 4.00
2639 3084 1.191535 TGGAACGGAGGGAGTATGTG 58.808 55.000 0.00 0.00 0.00 3.21
2645 3090 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
2646 3091 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
2647 3092 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
2648 3093 4.770795 AGTCATCTATTTTGGAACGGAGG 58.229 43.478 0.00 0.00 0.00 4.30
2649 3094 5.419542 TGAGTCATCTATTTTGGAACGGAG 58.580 41.667 0.00 0.00 0.00 4.63
2650 3095 5.414789 TGAGTCATCTATTTTGGAACGGA 57.585 39.130 0.00 0.00 0.00 4.69
2651 3096 5.643777 AGTTGAGTCATCTATTTTGGAACGG 59.356 40.000 1.70 0.00 0.00 4.44
2652 3097 6.727824 AGTTGAGTCATCTATTTTGGAACG 57.272 37.500 1.70 0.00 0.00 3.95
2653 3098 8.352942 ACAAAGTTGAGTCATCTATTTTGGAAC 58.647 33.333 14.35 0.00 40.00 3.62
2654 3099 8.463930 ACAAAGTTGAGTCATCTATTTTGGAA 57.536 30.769 14.35 0.00 40.00 3.53
2655 3100 9.739276 ATACAAAGTTGAGTCATCTATTTTGGA 57.261 29.630 14.35 9.09 40.00 3.53
2664 3109 9.530129 CGAAAGTTAATACAAAGTTGAGTCATC 57.470 33.333 0.00 0.00 0.00 2.92
2665 3110 9.052759 ACGAAAGTTAATACAAAGTTGAGTCAT 57.947 29.630 0.00 0.00 46.40 3.06
2666 3111 8.428186 ACGAAAGTTAATACAAAGTTGAGTCA 57.572 30.769 0.00 0.00 46.40 3.41
2667 3112 9.789029 GTACGAAAGTTAATACAAAGTTGAGTC 57.211 33.333 0.00 0.00 46.40 3.36
2668 3113 9.316730 TGTACGAAAGTTAATACAAAGTTGAGT 57.683 29.630 0.00 0.00 46.40 3.41
2669 3114 9.577003 GTGTACGAAAGTTAATACAAAGTTGAG 57.423 33.333 0.00 0.00 46.40 3.02
2670 3115 9.096160 TGTGTACGAAAGTTAATACAAAGTTGA 57.904 29.630 0.00 0.00 46.40 3.18
2671 3116 9.365311 CTGTGTACGAAAGTTAATACAAAGTTG 57.635 33.333 0.00 0.00 46.40 3.16
2672 3117 9.101655 ACTGTGTACGAAAGTTAATACAAAGTT 57.898 29.630 9.55 0.00 42.01 2.66
2673 3118 8.652810 ACTGTGTACGAAAGTTAATACAAAGT 57.347 30.769 9.55 9.55 46.40 2.66
2674 3119 9.365311 CAACTGTGTACGAAAGTTAATACAAAG 57.635 33.333 7.17 8.65 46.40 2.77
2675 3120 8.336806 CCAACTGTGTACGAAAGTTAATACAAA 58.663 33.333 7.17 0.00 46.40 2.83
2676 3121 7.041916 CCCAACTGTGTACGAAAGTTAATACAA 60.042 37.037 7.17 0.00 46.40 2.41
2677 3122 6.424509 CCCAACTGTGTACGAAAGTTAATACA 59.575 38.462 7.17 0.00 46.40 2.29
2678 3123 6.424812 ACCCAACTGTGTACGAAAGTTAATAC 59.575 38.462 7.17 0.00 46.40 1.89
2679 3124 6.523840 ACCCAACTGTGTACGAAAGTTAATA 58.476 36.000 7.17 0.00 46.40 0.98
2680 3125 5.370679 ACCCAACTGTGTACGAAAGTTAAT 58.629 37.500 7.17 0.00 46.40 1.40
2681 3126 4.768583 ACCCAACTGTGTACGAAAGTTAA 58.231 39.130 7.17 0.00 46.40 2.01
2682 3127 4.141981 TGACCCAACTGTGTACGAAAGTTA 60.142 41.667 7.17 0.00 46.40 2.24
2683 3128 3.200483 GACCCAACTGTGTACGAAAGTT 58.800 45.455 0.00 2.71 46.40 2.66
2685 3130 2.828877 TGACCCAACTGTGTACGAAAG 58.171 47.619 0.00 0.00 0.00 2.62
2686 3131 2.983907 TGACCCAACTGTGTACGAAA 57.016 45.000 0.00 0.00 0.00 3.46
2687 3132 2.631062 AGATGACCCAACTGTGTACGAA 59.369 45.455 0.00 0.00 0.00 3.85
2688 3133 2.244695 AGATGACCCAACTGTGTACGA 58.755 47.619 0.00 0.00 0.00 3.43
2689 3134 2.743636 AGATGACCCAACTGTGTACG 57.256 50.000 0.00 0.00 0.00 3.67
2690 3135 6.128007 CCAAAATAGATGACCCAACTGTGTAC 60.128 42.308 0.00 0.00 0.00 2.90
2691 3136 5.943416 CCAAAATAGATGACCCAACTGTGTA 59.057 40.000 0.00 0.00 0.00 2.90
2692 3137 4.766891 CCAAAATAGATGACCCAACTGTGT 59.233 41.667 0.00 0.00 0.00 3.72
2693 3138 5.009631 TCCAAAATAGATGACCCAACTGTG 58.990 41.667 0.00 0.00 0.00 3.66
2694 3139 5.255397 TCCAAAATAGATGACCCAACTGT 57.745 39.130 0.00 0.00 0.00 3.55
2695 3140 5.391950 CGTTCCAAAATAGATGACCCAACTG 60.392 44.000 0.00 0.00 0.00 3.16
2696 3141 4.700213 CGTTCCAAAATAGATGACCCAACT 59.300 41.667 0.00 0.00 0.00 3.16
2697 3142 4.142469 CCGTTCCAAAATAGATGACCCAAC 60.142 45.833 0.00 0.00 0.00 3.77
2698 3143 4.013728 CCGTTCCAAAATAGATGACCCAA 58.986 43.478 0.00 0.00 0.00 4.12
2699 3144 3.264706 TCCGTTCCAAAATAGATGACCCA 59.735 43.478 0.00 0.00 0.00 4.51
2700 3145 3.877508 CTCCGTTCCAAAATAGATGACCC 59.122 47.826 0.00 0.00 0.00 4.46
2701 3146 3.877508 CCTCCGTTCCAAAATAGATGACC 59.122 47.826 0.00 0.00 0.00 4.02
2702 3147 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
2703 3148 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
2704 3149 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
2705 3150 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
2706 3151 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
2707 3152 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
2708 3153 4.472108 ACATACTCCCTCCGTTCCAAAATA 59.528 41.667 0.00 0.00 0.00 1.40
2709 3154 3.265995 ACATACTCCCTCCGTTCCAAAAT 59.734 43.478 0.00 0.00 0.00 1.82
2710 3155 2.640826 ACATACTCCCTCCGTTCCAAAA 59.359 45.455 0.00 0.00 0.00 2.44
2711 3156 2.262637 ACATACTCCCTCCGTTCCAAA 58.737 47.619 0.00 0.00 0.00 3.28
2712 3157 1.946984 ACATACTCCCTCCGTTCCAA 58.053 50.000 0.00 0.00 0.00 3.53
2713 3158 1.946984 AACATACTCCCTCCGTTCCA 58.053 50.000 0.00 0.00 0.00 3.53
2714 3159 3.345508 AAAACATACTCCCTCCGTTCC 57.654 47.619 0.00 0.00 0.00 3.62
2715 3160 4.331992 GCTTAAAACATACTCCCTCCGTTC 59.668 45.833 0.00 0.00 0.00 3.95
2716 3161 4.019591 AGCTTAAAACATACTCCCTCCGTT 60.020 41.667 0.00 0.00 0.00 4.44
2717 3162 3.518303 AGCTTAAAACATACTCCCTCCGT 59.482 43.478 0.00 0.00 0.00 4.69
2718 3163 4.120589 GAGCTTAAAACATACTCCCTCCG 58.879 47.826 0.00 0.00 0.00 4.63
2719 3164 4.452825 GGAGCTTAAAACATACTCCCTCC 58.547 47.826 0.00 0.00 40.91 4.30
2723 3168 6.835819 AAAAGGGAGCTTAAAACATACTCC 57.164 37.500 0.00 0.00 45.10 3.85
2724 3169 7.882179 TGAAAAAGGGAGCTTAAAACATACTC 58.118 34.615 0.00 0.00 0.00 2.59
2725 3170 7.833285 TGAAAAAGGGAGCTTAAAACATACT 57.167 32.000 0.00 0.00 0.00 2.12
2728 3173 8.870116 ACTATTGAAAAAGGGAGCTTAAAACAT 58.130 29.630 0.00 0.00 0.00 2.71
2753 3215 4.318831 CCAAAGAGTCGTGAACTGCTAAAC 60.319 45.833 0.00 0.00 38.74 2.01
2766 3228 5.689383 TTTCCAAATTCTCCAAAGAGTCG 57.311 39.130 0.00 0.00 41.26 4.18
2847 3309 9.788960 GAAAGCAAACGAAGATTATTATTCCTT 57.211 29.630 0.00 0.00 0.00 3.36
2967 5724 2.698616 CCGAATTTTAGCGCGCGA 59.301 55.556 37.18 19.65 0.00 5.87
3016 5773 1.797964 CGCGTGCACTATTTTACAGC 58.202 50.000 16.19 6.39 0.00 4.40
3064 5821 0.729116 TTTGCAGCTTCTGATAGCGC 59.271 50.000 0.00 0.00 45.82 5.92
3069 5826 2.235402 CCCCAAATTTGCAGCTTCTGAT 59.765 45.455 12.92 0.00 32.44 2.90
3070 5827 1.619827 CCCCAAATTTGCAGCTTCTGA 59.380 47.619 12.92 0.00 32.44 3.27
3100 5857 2.800746 AAATTGTGAAGCGCGCGC 60.801 55.556 45.10 45.10 42.33 6.86
3134 5891 4.370066 CCCAAAAATGCGCGCCCA 62.370 61.111 30.77 11.98 0.00 5.36
3140 5897 0.108520 AGCAGATGCCCAAAAATGCG 60.109 50.000 0.14 0.00 43.38 4.73
3142 5899 3.934579 GGTTTAGCAGATGCCCAAAAATG 59.065 43.478 0.14 0.00 43.38 2.32
3143 5900 3.582208 TGGTTTAGCAGATGCCCAAAAAT 59.418 39.130 0.14 0.00 43.38 1.82
3151 5908 3.514645 CCAACATTGGTTTAGCAGATGC 58.485 45.455 2.22 0.00 43.43 3.91
3175 5932 4.521256 ACTTTAGCATTTTTAGGGCGTCAA 59.479 37.500 0.00 0.00 0.00 3.18
3180 5937 3.521560 GCCACTTTAGCATTTTTAGGGC 58.478 45.455 0.00 0.00 0.00 5.19
3182 5939 3.179048 GCGCCACTTTAGCATTTTTAGG 58.821 45.455 0.00 0.00 0.00 2.69
3189 5946 0.742990 TTAGCGCGCCACTTTAGCAT 60.743 50.000 30.33 7.53 0.00 3.79
3195 5952 3.775661 AATAATTTTAGCGCGCCACTT 57.224 38.095 30.33 16.49 0.00 3.16
3211 5968 3.458779 AAGTTTCGCGCGCTAAAATAA 57.541 38.095 29.00 9.66 0.00 1.40
3297 6054 8.677300 TCTTGATTTTTCATCTATAGCCAACAC 58.323 33.333 0.00 0.00 0.00 3.32
3370 6127 8.715191 ATAAAACAAGCACACAATCTTGAAAA 57.285 26.923 8.72 0.00 41.50 2.29
3397 6154 9.747898 ATAAATTAACATAGGTGGTTCAGTTCA 57.252 29.630 0.00 0.00 0.00 3.18
3554 6370 7.401782 ACCATACAAATAAGGCCCAAAGTAAAT 59.598 33.333 0.00 0.00 0.00 1.40
3619 6435 2.669133 CCAGCCCATCCTCGTGGAA 61.669 63.158 10.77 0.00 46.80 3.53
3741 6557 4.450976 AGAAGCAAGTGTGTCACATGTTA 58.549 39.130 9.31 0.00 35.79 2.41
4042 6858 5.850557 TTTGAAATCTCTTGGCAAAGACA 57.149 34.783 0.00 0.00 37.51 3.41
4174 6990 2.409378 AGCTCGCGAATTTTTGCATTTG 59.591 40.909 11.33 0.00 37.43 2.32
4207 7023 2.159240 TCCCGAACGAGATGAATGTGAG 60.159 50.000 0.00 0.00 0.00 3.51
4222 7038 0.887387 CGCCCTCAAAAACTCCCGAA 60.887 55.000 0.00 0.00 0.00 4.30
4240 7056 2.169832 TCCAAAAGGAGCTGTTCTCG 57.830 50.000 0.00 0.00 42.82 4.04
4383 7199 3.947834 GCTAGCACCATTGGTTGTAATCT 59.052 43.478 10.63 0.00 31.02 2.40
4486 7302 4.263112 GGACTGCCTAGAAGTTCTTTCCTT 60.263 45.833 11.40 0.00 36.40 3.36
4640 7456 0.108945 GGCAAATGCAGCTCAGAACC 60.109 55.000 7.80 0.00 44.36 3.62
4906 7722 8.417884 GCTGTACTACTCCTGATTTTCTCTATT 58.582 37.037 0.00 0.00 0.00 1.73
4960 7776 1.826385 CCTTGGCAGAAGAATCGGTT 58.174 50.000 0.00 0.00 0.00 4.44
4988 7804 6.366315 AGCAGTATCTAAGACGTTCTGTAG 57.634 41.667 0.00 0.00 0.00 2.74
4997 7813 7.947282 ACTTCCTGATTAGCAGTATCTAAGAC 58.053 38.462 0.00 0.00 43.33 3.01
5061 7877 9.050601 CAGGGATTAGACTCATTGTATCTTTTC 57.949 37.037 0.00 0.00 0.00 2.29
5086 7902 1.522668 CCTTGCTGAAATGACGACCA 58.477 50.000 0.00 0.00 0.00 4.02
5087 7903 0.169009 GCCTTGCTGAAATGACGACC 59.831 55.000 0.00 0.00 0.00 4.79
5251 8068 2.686405 ACACGGGAGAACCAAAACTTTC 59.314 45.455 0.00 0.00 40.22 2.62
5292 8112 4.207224 CGCTAGGATAACTTTGACATGTCG 59.793 45.833 20.54 9.32 0.00 4.35
5294 8114 5.086104 ACGCTAGGATAACTTTGACATGT 57.914 39.130 0.00 0.00 0.00 3.21
5376 8196 8.264347 TGATACCAAAATTGCTAGTACATGAGA 58.736 33.333 0.00 0.00 0.00 3.27
5377 8197 8.437360 TGATACCAAAATTGCTAGTACATGAG 57.563 34.615 0.00 0.00 0.00 2.90
5378 8198 8.978874 ATGATACCAAAATTGCTAGTACATGA 57.021 30.769 0.00 0.00 0.00 3.07
5379 8199 9.669353 GAATGATACCAAAATTGCTAGTACATG 57.331 33.333 0.00 0.00 0.00 3.21
5380 8200 8.850156 GGAATGATACCAAAATTGCTAGTACAT 58.150 33.333 0.00 0.00 0.00 2.29
5381 8201 7.831690 TGGAATGATACCAAAATTGCTAGTACA 59.168 33.333 0.00 0.00 34.25 2.90
5412 8232 1.667830 CGCCACACAGGACGAACAT 60.668 57.895 0.00 0.00 41.22 2.71
5491 8333 7.571093 CCTGTTGGAAATGCTCTTAAGAGAGG 61.571 46.154 32.16 21.32 41.88 3.69
5614 10857 8.414778 GGCTGATGAACTATGTAACTAGTACTT 58.585 37.037 0.00 0.00 31.70 2.24
5621 10864 4.159693 TGTCGGCTGATGAACTATGTAACT 59.840 41.667 0.00 0.00 0.00 2.24
5639 10884 6.842163 ACTATGTTGAATTTAAGCTTGTCGG 58.158 36.000 9.86 0.00 0.00 4.79
5665 10910 9.897744 ACTTTGTGTTATTTCTTATGTGTGATG 57.102 29.630 0.00 0.00 0.00 3.07
5698 10944 7.443879 TGAACTAGTTGTGCTTCATGTCATTTA 59.556 33.333 14.14 0.00 0.00 1.40
5699 10945 6.262944 TGAACTAGTTGTGCTTCATGTCATTT 59.737 34.615 14.14 0.00 0.00 2.32
5700 10946 5.764686 TGAACTAGTTGTGCTTCATGTCATT 59.235 36.000 14.14 0.00 0.00 2.57
5701 10947 5.308014 TGAACTAGTTGTGCTTCATGTCAT 58.692 37.500 14.14 0.00 0.00 3.06
5702 10948 4.702831 TGAACTAGTTGTGCTTCATGTCA 58.297 39.130 14.14 0.00 0.00 3.58
5703 10949 4.752101 ACTGAACTAGTTGTGCTTCATGTC 59.248 41.667 14.14 0.00 35.67 3.06
5704 10950 4.708177 ACTGAACTAGTTGTGCTTCATGT 58.292 39.130 14.14 1.75 35.67 3.21
5716 10962 6.025749 TGTCGATTGATGAACTGAACTAGT 57.974 37.500 0.00 0.00 42.89 2.57
5717 10963 6.587990 ACTTGTCGATTGATGAACTGAACTAG 59.412 38.462 0.00 0.00 0.00 2.57
5718 10964 6.455647 ACTTGTCGATTGATGAACTGAACTA 58.544 36.000 0.00 0.00 0.00 2.24
5719 10965 5.300752 ACTTGTCGATTGATGAACTGAACT 58.699 37.500 0.00 0.00 0.00 3.01
5720 10966 5.177511 TGACTTGTCGATTGATGAACTGAAC 59.822 40.000 0.00 0.00 0.00 3.18
5721 10967 5.296748 TGACTTGTCGATTGATGAACTGAA 58.703 37.500 0.00 0.00 0.00 3.02
5722 10968 4.881920 TGACTTGTCGATTGATGAACTGA 58.118 39.130 0.00 0.00 0.00 3.41
5723 10969 5.050159 TGTTGACTTGTCGATTGATGAACTG 60.050 40.000 0.00 0.00 0.00 3.16
5724 10970 5.056480 TGTTGACTTGTCGATTGATGAACT 58.944 37.500 0.00 0.00 0.00 3.01
5725 10971 5.342806 TGTTGACTTGTCGATTGATGAAC 57.657 39.130 0.00 0.00 0.00 3.18
5726 10972 6.873605 ACTATGTTGACTTGTCGATTGATGAA 59.126 34.615 0.00 0.00 0.00 2.57
5727 10973 6.398095 ACTATGTTGACTTGTCGATTGATGA 58.602 36.000 0.00 0.00 0.00 2.92
5728 10974 6.653273 ACTATGTTGACTTGTCGATTGATG 57.347 37.500 0.00 0.00 0.00 3.07
5729 10975 6.650807 ACAACTATGTTGACTTGTCGATTGAT 59.349 34.615 16.04 0.00 35.91 2.57
5730 10976 5.989168 ACAACTATGTTGACTTGTCGATTGA 59.011 36.000 16.04 0.00 35.91 2.57
5731 10977 6.228273 ACAACTATGTTGACTTGTCGATTG 57.772 37.500 16.04 0.00 35.91 2.67
5745 10991 6.156949 AGGGAGTATGTGATGAACAACTATGT 59.843 38.462 0.00 0.00 43.61 2.29
5746 10992 6.586344 AGGGAGTATGTGATGAACAACTATG 58.414 40.000 0.00 0.00 43.61 2.23
5747 10993 6.183361 GGAGGGAGTATGTGATGAACAACTAT 60.183 42.308 0.00 0.00 43.61 2.12
5748 10994 5.128827 GGAGGGAGTATGTGATGAACAACTA 59.871 44.000 0.00 0.00 43.61 2.24
5749 10995 4.080863 GGAGGGAGTATGTGATGAACAACT 60.081 45.833 0.00 0.00 43.61 3.16
5750 10996 4.192317 GGAGGGAGTATGTGATGAACAAC 58.808 47.826 0.00 0.00 43.61 3.32
5751 10997 3.118775 CGGAGGGAGTATGTGATGAACAA 60.119 47.826 0.00 0.00 43.61 2.83
5752 10998 2.430694 CGGAGGGAGTATGTGATGAACA 59.569 50.000 0.00 0.00 44.79 3.18
5753 10999 2.431057 ACGGAGGGAGTATGTGATGAAC 59.569 50.000 0.00 0.00 0.00 3.18
5754 11000 2.747177 ACGGAGGGAGTATGTGATGAA 58.253 47.619 0.00 0.00 0.00 2.57
5755 11001 2.454336 ACGGAGGGAGTATGTGATGA 57.546 50.000 0.00 0.00 0.00 2.92
5756 11002 2.224066 GGAACGGAGGGAGTATGTGATG 60.224 54.545 0.00 0.00 0.00 3.07
5757 11003 2.040178 GGAACGGAGGGAGTATGTGAT 58.960 52.381 0.00 0.00 0.00 3.06
5758 11004 1.272816 TGGAACGGAGGGAGTATGTGA 60.273 52.381 0.00 0.00 0.00 3.58
5759 11005 1.191535 TGGAACGGAGGGAGTATGTG 58.808 55.000 0.00 0.00 0.00 3.21
5760 11006 1.946984 TTGGAACGGAGGGAGTATGT 58.053 50.000 0.00 0.00 0.00 2.29
5761 11007 3.343941 TTTTGGAACGGAGGGAGTATG 57.656 47.619 0.00 0.00 0.00 2.39
5762 11008 4.966805 TCTATTTTGGAACGGAGGGAGTAT 59.033 41.667 0.00 0.00 0.00 2.12
5763 11009 4.355549 TCTATTTTGGAACGGAGGGAGTA 58.644 43.478 0.00 0.00 0.00 2.59
5764 11010 3.178865 TCTATTTTGGAACGGAGGGAGT 58.821 45.455 0.00 0.00 0.00 3.85
5765 11011 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
5766 11012 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
5767 11013 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
5768 11014 3.877508 GGTCATCTATTTTGGAACGGAGG 59.122 47.826 0.00 0.00 0.00 4.30
5769 11015 3.877508 GGGTCATCTATTTTGGAACGGAG 59.122 47.826 0.00 0.00 0.00 4.63
5770 11016 3.264706 TGGGTCATCTATTTTGGAACGGA 59.735 43.478 0.00 0.00 0.00 4.69
5771 11017 3.616219 TGGGTCATCTATTTTGGAACGG 58.384 45.455 0.00 0.00 0.00 4.44
5772 11018 5.835113 ATTGGGTCATCTATTTTGGAACG 57.165 39.130 0.00 0.00 0.00 3.95
5820 11066 9.003658 CCAAAATAGATGACTCAACTTTGTACT 57.996 33.333 0.00 0.00 0.00 2.73
5821 11067 8.999431 TCCAAAATAGATGACTCAACTTTGTAC 58.001 33.333 0.00 0.00 0.00 2.90
5822 11068 9.567776 TTCCAAAATAGATGACTCAACTTTGTA 57.432 29.630 0.00 0.00 0.00 2.41
5823 11069 8.352942 GTTCCAAAATAGATGACTCAACTTTGT 58.647 33.333 0.00 0.00 0.00 2.83
5824 11070 7.535258 CGTTCCAAAATAGATGACTCAACTTTG 59.465 37.037 0.00 0.00 0.00 2.77
5825 11071 7.308589 CCGTTCCAAAATAGATGACTCAACTTT 60.309 37.037 0.00 0.00 0.00 2.66
5826 11072 6.149474 CCGTTCCAAAATAGATGACTCAACTT 59.851 38.462 0.00 0.00 0.00 2.66
5827 11073 5.643777 CCGTTCCAAAATAGATGACTCAACT 59.356 40.000 0.00 0.00 0.00 3.16
5828 11074 5.642063 TCCGTTCCAAAATAGATGACTCAAC 59.358 40.000 0.00 0.00 0.00 3.18
5829 11075 5.800296 TCCGTTCCAAAATAGATGACTCAA 58.200 37.500 0.00 0.00 0.00 3.02
5830 11076 5.414789 TCCGTTCCAAAATAGATGACTCA 57.585 39.130 0.00 0.00 0.00 3.41
5831 11077 4.811557 CCTCCGTTCCAAAATAGATGACTC 59.188 45.833 0.00 0.00 0.00 3.36
5832 11078 4.384208 CCCTCCGTTCCAAAATAGATGACT 60.384 45.833 0.00 0.00 0.00 3.41
5833 11079 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
5834 11080 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
5835 11081 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
5836 11082 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
5837 11083 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
5838 11084 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
5839 11085 6.612456 TCTTATACTCCCTCCGTTCCAAAATA 59.388 38.462 0.00 0.00 0.00 1.40
5840 11086 5.427481 TCTTATACTCCCTCCGTTCCAAAAT 59.573 40.000 0.00 0.00 0.00 1.82
5841 11087 4.778958 TCTTATACTCCCTCCGTTCCAAAA 59.221 41.667 0.00 0.00 0.00 2.44
5842 11088 4.161001 GTCTTATACTCCCTCCGTTCCAAA 59.839 45.833 0.00 0.00 0.00 3.28
5843 11089 3.703052 GTCTTATACTCCCTCCGTTCCAA 59.297 47.826 0.00 0.00 0.00 3.53
5844 11090 3.294214 GTCTTATACTCCCTCCGTTCCA 58.706 50.000 0.00 0.00 0.00 3.53
5845 11091 3.294214 TGTCTTATACTCCCTCCGTTCC 58.706 50.000 0.00 0.00 0.00 3.62
5846 11092 6.040166 TGTTATGTCTTATACTCCCTCCGTTC 59.960 42.308 0.00 0.00 0.00 3.95
5847 11093 5.895534 TGTTATGTCTTATACTCCCTCCGTT 59.104 40.000 0.00 0.00 0.00 4.44
5848 11094 5.452255 TGTTATGTCTTATACTCCCTCCGT 58.548 41.667 0.00 0.00 0.00 4.69
5849 11095 6.401047 TTGTTATGTCTTATACTCCCTCCG 57.599 41.667 0.00 0.00 0.00 4.63
5850 11096 9.110502 CTTTTTGTTATGTCTTATACTCCCTCC 57.889 37.037 0.00 0.00 0.00 4.30
5851 11097 9.668497 ACTTTTTGTTATGTCTTATACTCCCTC 57.332 33.333 0.00 0.00 0.00 4.30
5872 11118 9.362539 GCTTCATGTCATTTATGATGAACTTTT 57.637 29.630 5.19 0.00 39.30 2.27
5873 11119 8.525316 TGCTTCATGTCATTTATGATGAACTTT 58.475 29.630 5.19 0.00 39.30 2.66
5874 11120 7.972277 GTGCTTCATGTCATTTATGATGAACTT 59.028 33.333 5.19 0.00 39.30 2.66
5875 11121 7.121611 TGTGCTTCATGTCATTTATGATGAACT 59.878 33.333 11.12 0.00 38.30 3.01
5876 11122 7.252708 TGTGCTTCATGTCATTTATGATGAAC 58.747 34.615 5.19 0.00 38.12 3.18
5877 11123 7.393841 TGTGCTTCATGTCATTTATGATGAA 57.606 32.000 7.95 7.95 39.30 2.57
5878 11124 7.121611 AGTTGTGCTTCATGTCATTTATGATGA 59.878 33.333 0.00 0.00 39.30 2.92
5879 11125 7.255569 AGTTGTGCTTCATGTCATTTATGATG 58.744 34.615 0.00 0.00 39.30 3.07
5880 11126 7.400599 AGTTGTGCTTCATGTCATTTATGAT 57.599 32.000 0.00 0.00 39.30 2.45
5881 11127 6.822667 AGTTGTGCTTCATGTCATTTATGA 57.177 33.333 0.00 0.00 33.00 2.15
5882 11128 7.755591 ACTAGTTGTGCTTCATGTCATTTATG 58.244 34.615 0.00 0.00 0.00 1.90
5883 11129 7.928307 ACTAGTTGTGCTTCATGTCATTTAT 57.072 32.000 0.00 0.00 0.00 1.40
5924 11170 6.380560 AGAGAGATCTCATTGAGTGATGAACA 59.619 38.462 24.39 0.00 45.21 3.18
5927 11173 6.127793 TCAGAGAGATCTCATTGAGTGATGA 58.872 40.000 24.39 10.87 45.21 2.92
5948 11194 3.283751 AGGTACTCGTGAGGATCTTCAG 58.716 50.000 7.94 3.17 24.33 3.02
5957 11203 3.326733 CGAGATCAAGGTACTCGTGAG 57.673 52.381 0.00 0.00 45.23 3.51
5962 11208 5.759506 TGAGATTCGAGATCAAGGTACTC 57.240 43.478 0.00 0.00 38.49 2.59
5967 11213 6.324561 TCACTATGAGATTCGAGATCAAGG 57.675 41.667 0.00 4.86 0.00 3.61
5969 11215 7.340122 AGTTCACTATGAGATTCGAGATCAA 57.660 36.000 0.00 0.00 0.00 2.57
5987 11233 3.498397 TCCGATGCTTTCTTCAAGTTCAC 59.502 43.478 0.00 0.00 34.56 3.18
6003 11249 2.658593 GGACGACCGCATCCGATG 60.659 66.667 3.82 3.82 36.29 3.84
6004 11250 3.912907 GGGACGACCGCATCCGAT 61.913 66.667 0.00 0.00 35.67 4.18
6006 11252 4.143333 AAGGGACGACCGCATCCG 62.143 66.667 0.00 0.00 46.96 4.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.