Multiple sequence alignment - TraesCS2B01G520800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G520800 chr2B 100.000 7121 0 0 1 7121 715607345 715600225 0.000000e+00 13151.0
1 TraesCS2B01G520800 chr2A 93.049 2676 113 22 854 3506 724752478 724749853 0.000000e+00 3843.0
2 TraesCS2B01G520800 chr2A 97.451 2197 42 6 4820 7013 724749355 724747170 0.000000e+00 3735.0
3 TraesCS2B01G520800 chr2A 97.391 460 11 1 3505 3964 724749807 724749349 0.000000e+00 782.0
4 TraesCS2B01G520800 chr2A 98.355 304 5 0 6818 7121 724746931 724746628 1.050000e-147 534.0
5 TraesCS2B01G520800 chr2A 88.599 421 39 8 401 815 59937391 59936974 2.970000e-138 503.0
6 TraesCS2B01G520800 chr2A 97.959 196 4 0 6818 7013 724747149 724746954 2.460000e-89 340.0
7 TraesCS2B01G520800 chr2A 100.000 28 0 0 341 368 40430424 40430397 1.300000e-02 52.8
8 TraesCS2B01G520800 chr2D 92.496 2732 129 29 826 3506 590373083 590370377 0.000000e+00 3840.0
9 TraesCS2B01G520800 chr2D 94.914 2045 66 11 5086 7121 590369101 590367086 0.000000e+00 3166.0
10 TraesCS2B01G520800 chr2D 95.045 444 16 4 3505 3944 590370331 590369890 0.000000e+00 693.0
11 TraesCS2B01G520800 chr2D 92.222 270 10 4 4832 5100 590369890 590369631 8.720000e-99 372.0
12 TraesCS2B01G520800 chr3A 87.112 1645 136 34 4832 6443 145621847 145620246 0.000000e+00 1794.0
13 TraesCS2B01G520800 chr3A 87.216 704 55 18 2821 3506 145623683 145622997 0.000000e+00 769.0
14 TraesCS2B01G520800 chr3A 89.630 405 37 5 2377 2780 145624089 145623689 1.770000e-140 510.0
15 TraesCS2B01G520800 chr3A 86.607 336 31 7 3533 3857 145622896 145622564 6.790000e-95 359.0
16 TraesCS2B01G520800 chr3A 100.000 28 0 0 340 367 694102833 694102806 1.300000e-02 52.8
17 TraesCS2B01G520800 chr1B 98.622 871 12 0 3949 4819 169952688 169951818 0.000000e+00 1543.0
18 TraesCS2B01G520800 chr1B 98.370 859 13 1 3961 4819 584498673 584499530 0.000000e+00 1507.0
19 TraesCS2B01G520800 chr1B 96.977 860 24 1 3960 4819 301272070 301271213 0.000000e+00 1443.0
20 TraesCS2B01G520800 chr5B 96.288 862 31 1 3959 4819 475692111 475692972 0.000000e+00 1413.0
21 TraesCS2B01G520800 chr5B 87.972 424 45 6 396 815 697520166 697520587 4.960000e-136 496.0
22 TraesCS2B01G520800 chr4B 94.774 861 45 0 3959 4819 273979011 273979871 0.000000e+00 1341.0
23 TraesCS2B01G520800 chr7B 94.048 840 48 2 3981 4819 743387403 743388241 0.000000e+00 1273.0
24 TraesCS2B01G520800 chr7B 91.870 861 70 0 3959 4819 615167826 615168686 0.000000e+00 1203.0
25 TraesCS2B01G520800 chr7B 92.500 40 1 2 333 370 540297452 540297413 1.000000e-03 56.5
26 TraesCS2B01G520800 chr7A 92.343 862 63 3 3959 4819 482730229 482729370 0.000000e+00 1223.0
27 TraesCS2B01G520800 chr7A 88.863 422 39 6 401 815 398920418 398920838 4.930000e-141 512.0
28 TraesCS2B01G520800 chr7A 88.599 421 39 7 401 815 283148530 283148947 2.970000e-138 503.0
29 TraesCS2B01G520800 chr1A 91.870 861 70 0 3959 4819 242010454 242009594 0.000000e+00 1203.0
30 TraesCS2B01G520800 chr1A 86.517 445 46 12 402 838 590963546 590963984 1.800000e-130 477.0
31 TraesCS2B01G520800 chr3B 83.213 1251 137 32 2019 3252 188736898 188735704 0.000000e+00 1079.0
32 TraesCS2B01G520800 chr3B 85.970 727 63 15 4832 5538 188712733 188712026 0.000000e+00 741.0
33 TraesCS2B01G520800 chr3B 83.776 678 85 16 5902 6561 188702585 188701915 2.820000e-173 619.0
34 TraesCS2B01G520800 chr3B 83.241 543 75 9 1390 1920 188737437 188736899 1.070000e-132 484.0
35 TraesCS2B01G520800 chr3B 79.825 228 24 10 3279 3506 188735704 188735499 5.760000e-31 147.0
36 TraesCS2B01G520800 chr3B 87.500 128 13 2 5855 5981 188702717 188702592 2.070000e-30 145.0
37 TraesCS2B01G520800 chr3B 97.917 48 1 0 6992 7039 188614992 188614945 4.580000e-12 84.2
38 TraesCS2B01G520800 chr7D 90.431 418 32 6 401 815 353804083 353803671 1.750000e-150 544.0
39 TraesCS2B01G520800 chr5D 88.599 421 40 7 401 815 423244539 423244121 8.240000e-139 505.0
40 TraesCS2B01G520800 chr6B 88.571 420 41 7 401 815 487204244 487203827 2.970000e-138 503.0
41 TraesCS2B01G520800 chr6D 88.647 414 42 5 406 815 18859412 18859824 3.840000e-137 499.0
42 TraesCS2B01G520800 chr6D 88.636 44 5 0 354 397 473081978 473081935 4.000000e-03 54.7
43 TraesCS2B01G520800 chrUn 96.875 32 0 1 337 367 320620061 320620092 1.300000e-02 52.8
44 TraesCS2B01G520800 chr3D 96.774 31 1 0 341 371 571057123 571057093 1.300000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G520800 chr2B 715600225 715607345 7120 True 13151.00 13151 100.00000 1 7121 1 chr2B.!!$R1 7120
1 TraesCS2B01G520800 chr2A 724746628 724752478 5850 True 1846.80 3843 96.84100 854 7121 5 chr2A.!!$R3 6267
2 TraesCS2B01G520800 chr2D 590367086 590373083 5997 True 2017.75 3840 93.66925 826 7121 4 chr2D.!!$R1 6295
3 TraesCS2B01G520800 chr3A 145620246 145624089 3843 True 858.00 1794 87.64125 2377 6443 4 chr3A.!!$R2 4066
4 TraesCS2B01G520800 chr1B 169951818 169952688 870 True 1543.00 1543 98.62200 3949 4819 1 chr1B.!!$R1 870
5 TraesCS2B01G520800 chr1B 584498673 584499530 857 False 1507.00 1507 98.37000 3961 4819 1 chr1B.!!$F1 858
6 TraesCS2B01G520800 chr1B 301271213 301272070 857 True 1443.00 1443 96.97700 3960 4819 1 chr1B.!!$R2 859
7 TraesCS2B01G520800 chr5B 475692111 475692972 861 False 1413.00 1413 96.28800 3959 4819 1 chr5B.!!$F1 860
8 TraesCS2B01G520800 chr4B 273979011 273979871 860 False 1341.00 1341 94.77400 3959 4819 1 chr4B.!!$F1 860
9 TraesCS2B01G520800 chr7B 743387403 743388241 838 False 1273.00 1273 94.04800 3981 4819 1 chr7B.!!$F2 838
10 TraesCS2B01G520800 chr7B 615167826 615168686 860 False 1203.00 1203 91.87000 3959 4819 1 chr7B.!!$F1 860
11 TraesCS2B01G520800 chr7A 482729370 482730229 859 True 1223.00 1223 92.34300 3959 4819 1 chr7A.!!$R1 860
12 TraesCS2B01G520800 chr1A 242009594 242010454 860 True 1203.00 1203 91.87000 3959 4819 1 chr1A.!!$R1 860
13 TraesCS2B01G520800 chr3B 188712026 188712733 707 True 741.00 741 85.97000 4832 5538 1 chr3B.!!$R2 706
14 TraesCS2B01G520800 chr3B 188735499 188737437 1938 True 570.00 1079 82.09300 1390 3506 3 chr3B.!!$R4 2116
15 TraesCS2B01G520800 chr3B 188701915 188702717 802 True 382.00 619 85.63800 5855 6561 2 chr3B.!!$R3 706

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
436 437 0.031414 TCCCAGCCTTAGGGTACTCC 60.031 60.000 1.41 0.00 46.82 3.85 F
814 815 0.179054 GGGAGCACCGGATACTTTCC 60.179 60.000 9.46 6.05 41.59 3.13 F
1961 2004 0.109458 CGTTGACCGTAGCAGTAGCA 60.109 55.000 0.00 0.00 45.49 3.49 F
2337 2394 1.076995 GAGGCGGCCTTACCCAAAT 60.077 57.895 24.71 0.00 31.76 2.32 F
2818 2881 1.146263 GATGGTAGGTCGCCCTTGG 59.854 63.158 0.00 0.00 42.66 3.61 F
4245 5095 1.162181 CGAGCATGGCGATGGATTGT 61.162 55.000 10.93 0.00 0.00 2.71 F
5075 5948 0.179065 CGCCTGCTCATCTTCCATCA 60.179 55.000 0.00 0.00 0.00 3.07 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1590 1602 0.250081 GCGGTCTTCATCCCTCCATC 60.250 60.000 0.00 0.00 0.00 3.51 R
2337 2394 0.680618 CCCAATTGCTCAAGCCAACA 59.319 50.000 0.00 0.00 41.18 3.33 R
3746 3980 1.199624 GCCAAAAGAACACTTGCACG 58.800 50.000 0.00 0.00 0.00 5.34 R
4245 5095 2.497770 GCGCTACGGAAAGGCCTA 59.502 61.111 5.16 0.00 0.00 3.93 R
4397 5247 1.593787 CCAGAGACGATGTGGCACT 59.406 57.895 19.83 4.13 35.17 4.40 R
5732 7155 0.035820 TGTTAGTCCCGACCAATGCC 60.036 55.000 0.00 0.00 0.00 4.40 R
7056 9037 0.106519 AGCAGCACCAACCTCTTGTT 60.107 50.000 0.00 0.00 37.80 2.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.046910 TCCAAATTCATGAAAACTCGCTC 57.953 39.130 13.09 0.00 0.00 5.03
23 24 4.518590 TCCAAATTCATGAAAACTCGCTCA 59.481 37.500 13.09 0.00 0.00 4.26
24 25 5.009510 TCCAAATTCATGAAAACTCGCTCAA 59.990 36.000 13.09 0.00 0.00 3.02
25 26 5.691305 CCAAATTCATGAAAACTCGCTCAAA 59.309 36.000 13.09 0.00 0.00 2.69
26 27 6.366877 CCAAATTCATGAAAACTCGCTCAAAT 59.633 34.615 13.09 0.00 0.00 2.32
27 28 7.095523 CCAAATTCATGAAAACTCGCTCAAATT 60.096 33.333 13.09 0.00 0.00 1.82
28 29 7.951530 AATTCATGAAAACTCGCTCAAATTT 57.048 28.000 13.09 0.00 0.00 1.82
29 30 6.752335 TTCATGAAAACTCGCTCAAATTTG 57.248 33.333 12.15 12.15 0.00 2.32
30 31 6.070897 TCATGAAAACTCGCTCAAATTTGA 57.929 33.333 19.45 19.45 35.57 2.69
100 101 7.642071 TGAATTCACAAGCTCTTTTAAATGC 57.358 32.000 3.38 0.00 0.00 3.56
101 102 7.208777 TGAATTCACAAGCTCTTTTAAATGCA 58.791 30.769 3.38 0.00 0.00 3.96
102 103 7.169645 TGAATTCACAAGCTCTTTTAAATGCAC 59.830 33.333 3.38 0.22 0.00 4.57
103 104 5.772825 TCACAAGCTCTTTTAAATGCACT 57.227 34.783 0.00 2.09 0.00 4.40
104 105 6.147864 TCACAAGCTCTTTTAAATGCACTT 57.852 33.333 0.00 0.00 0.00 3.16
105 106 6.572519 TCACAAGCTCTTTTAAATGCACTTT 58.427 32.000 0.00 0.00 0.00 2.66
106 107 7.041107 TCACAAGCTCTTTTAAATGCACTTTT 58.959 30.769 0.00 0.00 0.00 2.27
107 108 7.548780 TCACAAGCTCTTTTAAATGCACTTTTT 59.451 29.630 0.00 0.00 0.00 1.94
213 214 9.880157 AATCCCTGAACAATTATTCAAAATCTG 57.120 29.630 0.10 0.00 38.12 2.90
214 215 8.421249 TCCCTGAACAATTATTCAAAATCTGT 57.579 30.769 0.10 0.00 38.12 3.41
215 216 8.306038 TCCCTGAACAATTATTCAAAATCTGTG 58.694 33.333 0.10 0.00 38.12 3.66
216 217 8.306038 CCCTGAACAATTATTCAAAATCTGTGA 58.694 33.333 0.10 0.00 38.12 3.58
217 218 9.695526 CCTGAACAATTATTCAAAATCTGTGAA 57.304 29.630 0.10 0.00 38.12 3.18
228 229 9.603921 ATTCAAAATCTGTGAACACTTTTGATT 57.396 25.926 21.93 18.21 39.49 2.57
229 230 9.434420 TTCAAAATCTGTGAACACTTTTGATTT 57.566 25.926 21.93 18.37 39.49 2.17
230 231 9.086336 TCAAAATCTGTGAACACTTTTGATTTC 57.914 29.630 19.61 0.00 37.42 2.17
231 232 8.871862 CAAAATCTGTGAACACTTTTGATTTCA 58.128 29.630 17.73 0.00 36.49 2.69
232 233 9.603921 AAAATCTGTGAACACTTTTGATTTCAT 57.396 25.926 17.93 9.35 32.65 2.57
233 234 8.807667 AATCTGTGAACACTTTTGATTTCATC 57.192 30.769 6.51 0.00 30.96 2.92
234 235 7.332213 TCTGTGAACACTTTTGATTTCATCA 57.668 32.000 6.51 0.00 37.55 3.07
235 236 7.944061 TCTGTGAACACTTTTGATTTCATCAT 58.056 30.769 6.51 0.00 39.39 2.45
236 237 8.415553 TCTGTGAACACTTTTGATTTCATCATT 58.584 29.630 6.51 0.00 39.39 2.57
237 238 8.945481 TGTGAACACTTTTGATTTCATCATTT 57.055 26.923 6.51 0.00 39.39 2.32
238 239 9.381033 TGTGAACACTTTTGATTTCATCATTTT 57.619 25.926 6.51 0.00 39.39 1.82
265 266 9.664332 TTTCAAAAATCAACTCCTTTTTCATCA 57.336 25.926 0.00 0.00 33.49 3.07
266 267 8.876275 TCAAAAATCAACTCCTTTTTCATCAG 57.124 30.769 0.00 0.00 33.49 2.90
267 268 8.694540 TCAAAAATCAACTCCTTTTTCATCAGA 58.305 29.630 0.00 0.00 33.49 3.27
268 269 8.975439 CAAAAATCAACTCCTTTTTCATCAGAG 58.025 33.333 0.00 0.00 33.49 3.35
269 270 8.469309 AAAATCAACTCCTTTTTCATCAGAGA 57.531 30.769 0.00 0.00 0.00 3.10
270 271 8.469309 AAATCAACTCCTTTTTCATCAGAGAA 57.531 30.769 0.00 0.00 0.00 2.87
271 272 8.647256 AATCAACTCCTTTTTCATCAGAGAAT 57.353 30.769 0.00 0.00 0.00 2.40
272 273 9.745018 AATCAACTCCTTTTTCATCAGAGAATA 57.255 29.630 0.00 0.00 0.00 1.75
273 274 9.745018 ATCAACTCCTTTTTCATCAGAGAATAA 57.255 29.630 0.00 0.00 0.00 1.40
274 275 9.224267 TCAACTCCTTTTTCATCAGAGAATAAG 57.776 33.333 0.00 0.00 36.75 1.73
275 276 9.224267 CAACTCCTTTTTCATCAGAGAATAAGA 57.776 33.333 7.97 0.00 38.21 2.10
276 277 9.447157 AACTCCTTTTTCATCAGAGAATAAGAG 57.553 33.333 7.97 0.00 38.21 2.85
277 278 8.820831 ACTCCTTTTTCATCAGAGAATAAGAGA 58.179 33.333 7.97 4.40 38.21 3.10
278 279 9.316730 CTCCTTTTTCATCAGAGAATAAGAGAG 57.683 37.037 7.97 8.54 38.21 3.20
279 280 8.263640 TCCTTTTTCATCAGAGAATAAGAGAGG 58.736 37.037 7.97 0.00 38.21 3.69
280 281 8.263640 CCTTTTTCATCAGAGAATAAGAGAGGA 58.736 37.037 7.97 0.00 38.21 3.71
281 282 9.664332 CTTTTTCATCAGAGAATAAGAGAGGAA 57.336 33.333 0.00 0.00 38.21 3.36
283 284 9.610705 TTTTCATCAGAGAATAAGAGAGGAATG 57.389 33.333 0.00 0.00 30.51 2.67
284 285 8.544687 TTCATCAGAGAATAAGAGAGGAATGA 57.455 34.615 0.00 0.00 0.00 2.57
285 286 8.180706 TCATCAGAGAATAAGAGAGGAATGAG 57.819 38.462 0.00 0.00 0.00 2.90
286 287 6.403866 TCAGAGAATAAGAGAGGAATGAGC 57.596 41.667 0.00 0.00 0.00 4.26
287 288 5.896106 TCAGAGAATAAGAGAGGAATGAGCA 59.104 40.000 0.00 0.00 0.00 4.26
288 289 6.040729 TCAGAGAATAAGAGAGGAATGAGCAG 59.959 42.308 0.00 0.00 0.00 4.24
289 290 5.305128 AGAGAATAAGAGAGGAATGAGCAGG 59.695 44.000 0.00 0.00 0.00 4.85
290 291 5.215069 AGAATAAGAGAGGAATGAGCAGGA 58.785 41.667 0.00 0.00 0.00 3.86
291 292 5.664908 AGAATAAGAGAGGAATGAGCAGGAA 59.335 40.000 0.00 0.00 0.00 3.36
292 293 5.965033 ATAAGAGAGGAATGAGCAGGAAA 57.035 39.130 0.00 0.00 0.00 3.13
293 294 4.647564 AAGAGAGGAATGAGCAGGAAAA 57.352 40.909 0.00 0.00 0.00 2.29
294 295 4.647564 AGAGAGGAATGAGCAGGAAAAA 57.352 40.909 0.00 0.00 0.00 1.94
313 314 4.618920 AAAATAGTCGGTCAGGTGAACT 57.381 40.909 0.00 0.00 0.00 3.01
314 315 5.733620 AAAATAGTCGGTCAGGTGAACTA 57.266 39.130 0.00 0.00 0.00 2.24
315 316 5.733620 AAATAGTCGGTCAGGTGAACTAA 57.266 39.130 0.00 0.00 0.00 2.24
316 317 5.934402 AATAGTCGGTCAGGTGAACTAAT 57.066 39.130 0.00 0.00 0.00 1.73
317 318 3.870633 AGTCGGTCAGGTGAACTAATC 57.129 47.619 0.00 0.00 0.00 1.75
318 319 3.162666 AGTCGGTCAGGTGAACTAATCA 58.837 45.455 0.00 0.00 35.05 2.57
319 320 3.576982 AGTCGGTCAGGTGAACTAATCAA 59.423 43.478 0.00 0.00 40.50 2.57
320 321 3.927142 GTCGGTCAGGTGAACTAATCAAG 59.073 47.826 0.00 0.00 40.50 3.02
321 322 3.576982 TCGGTCAGGTGAACTAATCAAGT 59.423 43.478 0.00 0.00 40.50 3.16
336 337 8.601845 ACTAATCAAGTTTATTTTGGCAAACC 57.398 30.769 13.10 0.00 33.35 3.27
337 338 8.207545 ACTAATCAAGTTTATTTTGGCAAACCA 58.792 29.630 13.10 0.00 38.97 3.67
348 349 2.858745 TGGCAAACCAAGAACTACTCC 58.141 47.619 0.00 0.00 45.37 3.85
349 350 2.160205 GGCAAACCAAGAACTACTCCC 58.840 52.381 0.00 0.00 35.26 4.30
350 351 2.224793 GGCAAACCAAGAACTACTCCCT 60.225 50.000 0.00 0.00 35.26 4.20
351 352 3.075148 GCAAACCAAGAACTACTCCCTC 58.925 50.000 0.00 0.00 0.00 4.30
352 353 3.244596 GCAAACCAAGAACTACTCCCTCT 60.245 47.826 0.00 0.00 0.00 3.69
353 354 4.020485 GCAAACCAAGAACTACTCCCTCTA 60.020 45.833 0.00 0.00 0.00 2.43
354 355 5.338463 GCAAACCAAGAACTACTCCCTCTAT 60.338 44.000 0.00 0.00 0.00 1.98
355 356 6.342111 CAAACCAAGAACTACTCCCTCTATC 58.658 44.000 0.00 0.00 0.00 2.08
356 357 4.548669 ACCAAGAACTACTCCCTCTATCC 58.451 47.826 0.00 0.00 0.00 2.59
357 358 3.898741 CCAAGAACTACTCCCTCTATCCC 59.101 52.174 0.00 0.00 0.00 3.85
358 359 4.547671 CAAGAACTACTCCCTCTATCCCA 58.452 47.826 0.00 0.00 0.00 4.37
359 360 5.151454 CAAGAACTACTCCCTCTATCCCAT 58.849 45.833 0.00 0.00 0.00 4.00
360 361 6.315714 CAAGAACTACTCCCTCTATCCCATA 58.684 44.000 0.00 0.00 0.00 2.74
361 362 6.547396 AGAACTACTCCCTCTATCCCATAA 57.453 41.667 0.00 0.00 0.00 1.90
362 363 7.122311 AGAACTACTCCCTCTATCCCATAAT 57.878 40.000 0.00 0.00 0.00 1.28
363 364 8.245929 AGAACTACTCCCTCTATCCCATAATA 57.754 38.462 0.00 0.00 0.00 0.98
364 365 8.862097 AGAACTACTCCCTCTATCCCATAATAT 58.138 37.037 0.00 0.00 0.00 1.28
369 370 8.307582 ACTCCCTCTATCCCATAATATAAACG 57.692 38.462 0.00 0.00 0.00 3.60
370 371 7.120923 TCCCTCTATCCCATAATATAAACGC 57.879 40.000 0.00 0.00 0.00 4.84
371 372 6.901300 TCCCTCTATCCCATAATATAAACGCT 59.099 38.462 0.00 0.00 0.00 5.07
372 373 7.069578 TCCCTCTATCCCATAATATAAACGCTC 59.930 40.741 0.00 0.00 0.00 5.03
373 374 7.070074 CCCTCTATCCCATAATATAAACGCTCT 59.930 40.741 0.00 0.00 0.00 4.09
374 375 8.478877 CCTCTATCCCATAATATAAACGCTCTT 58.521 37.037 0.00 0.00 0.00 2.85
388 389 5.373981 AACGCTCTTATATTAGGAGACGG 57.626 43.478 11.74 0.00 36.52 4.79
389 390 4.649692 ACGCTCTTATATTAGGAGACGGA 58.350 43.478 11.74 0.00 36.52 4.69
390 391 4.696402 ACGCTCTTATATTAGGAGACGGAG 59.304 45.833 11.74 0.00 36.52 4.63
391 392 4.095185 CGCTCTTATATTAGGAGACGGAGG 59.905 50.000 0.00 0.00 34.12 4.30
392 393 4.399934 GCTCTTATATTAGGAGACGGAGGG 59.600 50.000 0.00 0.00 34.12 4.30
393 394 5.807063 GCTCTTATATTAGGAGACGGAGGGA 60.807 48.000 0.00 0.00 34.12 4.20
394 395 5.817784 TCTTATATTAGGAGACGGAGGGAG 58.182 45.833 0.00 0.00 0.00 4.30
395 396 5.312708 TCTTATATTAGGAGACGGAGGGAGT 59.687 44.000 0.00 0.00 0.00 3.85
396 397 6.503217 TCTTATATTAGGAGACGGAGGGAGTA 59.497 42.308 0.00 0.00 0.00 2.59
397 398 3.512219 ATTAGGAGACGGAGGGAGTAG 57.488 52.381 0.00 0.00 0.00 2.57
398 399 1.890552 TAGGAGACGGAGGGAGTAGT 58.109 55.000 0.00 0.00 0.00 2.73
399 400 0.547553 AGGAGACGGAGGGAGTAGTC 59.452 60.000 0.00 0.00 0.00 2.59
400 401 0.814812 GGAGACGGAGGGAGTAGTCG 60.815 65.000 0.00 0.00 38.53 4.18
401 402 0.814812 GAGACGGAGGGAGTAGTCGG 60.815 65.000 0.00 0.00 38.53 4.79
402 403 1.823041 GACGGAGGGAGTAGTCGGG 60.823 68.421 0.00 0.00 0.00 5.14
403 404 2.262774 GACGGAGGGAGTAGTCGGGA 62.263 65.000 0.00 0.00 0.00 5.14
404 405 1.077212 CGGAGGGAGTAGTCGGGAA 60.077 63.158 0.00 0.00 0.00 3.97
405 406 0.682209 CGGAGGGAGTAGTCGGGAAA 60.682 60.000 0.00 0.00 0.00 3.13
406 407 1.112950 GGAGGGAGTAGTCGGGAAAG 58.887 60.000 0.00 0.00 0.00 2.62
407 408 1.619160 GGAGGGAGTAGTCGGGAAAGT 60.619 57.143 0.00 0.00 0.00 2.66
408 409 2.357569 GGAGGGAGTAGTCGGGAAAGTA 60.358 54.545 0.00 0.00 0.00 2.24
409 410 3.564264 GAGGGAGTAGTCGGGAAAGTAT 58.436 50.000 0.00 0.00 0.00 2.12
410 411 3.564264 AGGGAGTAGTCGGGAAAGTATC 58.436 50.000 0.00 0.00 0.00 2.24
422 423 2.911484 GAAAGTATCCAGTGCTCCCAG 58.089 52.381 0.00 0.00 0.00 4.45
423 424 0.543749 AAGTATCCAGTGCTCCCAGC 59.456 55.000 0.00 0.00 42.82 4.85
424 425 1.147153 GTATCCAGTGCTCCCAGCC 59.853 63.158 0.00 0.00 41.51 4.85
425 426 1.003442 TATCCAGTGCTCCCAGCCT 59.997 57.895 0.00 0.00 41.51 4.58
426 427 0.621571 TATCCAGTGCTCCCAGCCTT 60.622 55.000 0.00 0.00 41.51 4.35
427 428 0.621571 ATCCAGTGCTCCCAGCCTTA 60.622 55.000 0.00 0.00 41.51 2.69
428 429 1.222936 CCAGTGCTCCCAGCCTTAG 59.777 63.158 0.00 0.00 41.51 2.18
429 430 1.222936 CAGTGCTCCCAGCCTTAGG 59.777 63.158 0.00 0.00 41.51 2.69
431 432 2.124996 TGCTCCCAGCCTTAGGGT 59.875 61.111 0.00 0.00 46.82 4.34
432 433 0.981277 GTGCTCCCAGCCTTAGGGTA 60.981 60.000 1.41 0.00 46.82 3.69
433 434 0.981277 TGCTCCCAGCCTTAGGGTAC 60.981 60.000 1.41 0.00 46.82 3.34
434 435 0.691413 GCTCCCAGCCTTAGGGTACT 60.691 60.000 1.41 0.00 46.82 2.73
435 436 1.415200 CTCCCAGCCTTAGGGTACTC 58.585 60.000 1.41 0.00 46.82 2.59
436 437 0.031414 TCCCAGCCTTAGGGTACTCC 60.031 60.000 1.41 0.00 46.82 3.85
446 447 4.553144 GGTACTCCCAGTGGTCCA 57.447 61.111 8.74 0.00 0.00 4.02
447 448 2.768046 GGTACTCCCAGTGGTCCAA 58.232 57.895 8.74 0.00 0.00 3.53
448 449 1.286248 GGTACTCCCAGTGGTCCAAT 58.714 55.000 8.74 0.00 0.00 3.16
449 450 1.065418 GGTACTCCCAGTGGTCCAATG 60.065 57.143 12.50 12.50 0.00 2.82
450 451 1.628846 GTACTCCCAGTGGTCCAATGT 59.371 52.381 17.64 2.19 0.00 2.71
451 452 0.693049 ACTCCCAGTGGTCCAATGTC 59.307 55.000 17.64 0.00 0.00 3.06
452 453 0.692476 CTCCCAGTGGTCCAATGTCA 59.308 55.000 17.64 3.23 0.00 3.58
453 454 1.073763 CTCCCAGTGGTCCAATGTCAA 59.926 52.381 17.64 2.48 0.00 3.18
454 455 1.496857 TCCCAGTGGTCCAATGTCAAA 59.503 47.619 17.64 0.00 0.00 2.69
455 456 2.091610 TCCCAGTGGTCCAATGTCAAAA 60.092 45.455 17.64 0.00 0.00 2.44
456 457 2.697751 CCCAGTGGTCCAATGTCAAAAA 59.302 45.455 17.64 0.00 0.00 1.94
511 512 7.765695 AAATGAGAATGTACACAAGGAATGT 57.234 32.000 0.00 0.00 45.34 2.71
512 513 6.992063 ATGAGAATGTACACAAGGAATGTC 57.008 37.500 0.00 0.00 41.46 3.06
513 514 5.863965 TGAGAATGTACACAAGGAATGTCA 58.136 37.500 0.00 0.00 41.46 3.58
514 515 5.700832 TGAGAATGTACACAAGGAATGTCAC 59.299 40.000 0.00 0.00 41.46 3.67
515 516 5.869579 AGAATGTACACAAGGAATGTCACT 58.130 37.500 0.00 0.00 41.46 3.41
516 517 7.004555 AGAATGTACACAAGGAATGTCACTA 57.995 36.000 0.00 0.00 41.46 2.74
517 518 6.874134 AGAATGTACACAAGGAATGTCACTAC 59.126 38.462 0.00 0.00 41.46 2.73
518 519 5.538849 TGTACACAAGGAATGTCACTACA 57.461 39.130 0.00 0.00 41.46 2.74
520 521 6.163476 TGTACACAAGGAATGTCACTACATC 58.837 40.000 0.00 0.00 45.79 3.06
521 522 4.579869 ACACAAGGAATGTCACTACATCC 58.420 43.478 0.00 0.00 45.79 3.51
522 523 4.287067 ACACAAGGAATGTCACTACATCCT 59.713 41.667 0.00 0.00 45.79 3.24
523 524 4.872691 CACAAGGAATGTCACTACATCCTC 59.127 45.833 8.80 0.00 45.79 3.71
524 525 4.780021 ACAAGGAATGTCACTACATCCTCT 59.220 41.667 8.80 0.00 45.79 3.69
525 526 5.958380 ACAAGGAATGTCACTACATCCTCTA 59.042 40.000 8.80 0.00 45.79 2.43
526 527 6.440647 ACAAGGAATGTCACTACATCCTCTAA 59.559 38.462 8.80 0.00 45.79 2.10
527 528 7.038302 ACAAGGAATGTCACTACATCCTCTAAA 60.038 37.037 8.80 0.00 45.79 1.85
528 529 7.496346 AGGAATGTCACTACATCCTCTAAAA 57.504 36.000 0.00 0.00 45.79 1.52
529 530 7.918076 AGGAATGTCACTACATCCTCTAAAAA 58.082 34.615 0.00 0.00 45.79 1.94
530 531 8.552296 AGGAATGTCACTACATCCTCTAAAAAT 58.448 33.333 0.00 0.00 45.79 1.82
531 532 9.178758 GGAATGTCACTACATCCTCTAAAAATT 57.821 33.333 0.00 0.00 45.79 1.82
534 535 9.739276 ATGTCACTACATCCTCTAAAAATTTCA 57.261 29.630 0.00 0.00 42.92 2.69
535 536 9.219603 TGTCACTACATCCTCTAAAAATTTCAG 57.780 33.333 0.00 0.00 0.00 3.02
536 537 8.669243 GTCACTACATCCTCTAAAAATTTCAGG 58.331 37.037 0.00 0.00 0.00 3.86
537 538 8.383175 TCACTACATCCTCTAAAAATTTCAGGT 58.617 33.333 0.00 0.00 0.00 4.00
538 539 8.669243 CACTACATCCTCTAAAAATTTCAGGTC 58.331 37.037 0.00 0.00 0.00 3.85
539 540 7.829706 ACTACATCCTCTAAAAATTTCAGGTCC 59.170 37.037 0.00 0.00 0.00 4.46
540 541 6.552008 ACATCCTCTAAAAATTTCAGGTCCA 58.448 36.000 0.00 0.00 0.00 4.02
541 542 7.010160 ACATCCTCTAAAAATTTCAGGTCCAA 58.990 34.615 0.00 0.00 0.00 3.53
542 543 7.508977 ACATCCTCTAAAAATTTCAGGTCCAAA 59.491 33.333 0.00 0.00 0.00 3.28
543 544 7.906199 TCCTCTAAAAATTTCAGGTCCAAAA 57.094 32.000 0.00 0.00 0.00 2.44
544 545 8.491045 TCCTCTAAAAATTTCAGGTCCAAAAT 57.509 30.769 0.00 0.00 0.00 1.82
545 546 8.933653 TCCTCTAAAAATTTCAGGTCCAAAATT 58.066 29.630 8.46 8.46 36.81 1.82
546 547 8.992073 CCTCTAAAAATTTCAGGTCCAAAATTG 58.008 33.333 13.01 4.51 35.74 2.32
547 548 9.762933 CTCTAAAAATTTCAGGTCCAAAATTGA 57.237 29.630 13.01 7.43 35.74 2.57
552 553 8.750515 AAATTTCAGGTCCAAAATTGAAATGT 57.249 26.923 13.83 8.06 44.85 2.71
553 554 9.844257 AAATTTCAGGTCCAAAATTGAAATGTA 57.156 25.926 13.83 0.00 44.85 2.29
554 555 8.831715 ATTTCAGGTCCAAAATTGAAATGTAC 57.168 30.769 12.80 0.00 44.28 2.90
555 556 6.968263 TCAGGTCCAAAATTGAAATGTACA 57.032 33.333 0.00 0.00 0.00 2.90
556 557 7.537596 TCAGGTCCAAAATTGAAATGTACAT 57.462 32.000 1.41 1.41 0.00 2.29
557 558 7.961351 TCAGGTCCAAAATTGAAATGTACATT 58.039 30.769 15.47 15.47 0.00 2.71
558 559 7.871973 TCAGGTCCAAAATTGAAATGTACATTG 59.128 33.333 21.46 8.09 0.00 2.82
559 560 7.871973 CAGGTCCAAAATTGAAATGTACATTGA 59.128 33.333 21.46 11.21 0.00 2.57
560 561 8.090214 AGGTCCAAAATTGAAATGTACATTGAG 58.910 33.333 21.46 6.01 0.00 3.02
561 562 8.087750 GGTCCAAAATTGAAATGTACATTGAGA 58.912 33.333 21.46 10.54 0.00 3.27
562 563 9.474920 GTCCAAAATTGAAATGTACATTGAGAA 57.525 29.630 21.46 14.05 0.00 2.87
595 596 9.206690 AGAGAAATCCAGATCTAAATAGTGTCA 57.793 33.333 0.00 0.00 0.00 3.58
596 597 9.823647 GAGAAATCCAGATCTAAATAGTGTCAA 57.176 33.333 0.00 0.00 0.00 3.18
602 603 9.494271 TCCAGATCTAAATAGTGTCAATATTGC 57.506 33.333 10.76 6.74 0.00 3.56
603 604 9.499479 CCAGATCTAAATAGTGTCAATATTGCT 57.501 33.333 10.76 5.08 0.00 3.91
611 612 9.846248 AAATAGTGTCAATATTGCTTTTGTCTC 57.154 29.630 10.76 0.00 0.00 3.36
612 613 8.798859 ATAGTGTCAATATTGCTTTTGTCTCT 57.201 30.769 10.76 4.43 0.00 3.10
613 614 7.516198 AGTGTCAATATTGCTTTTGTCTCTT 57.484 32.000 10.76 0.00 0.00 2.85
614 615 7.588512 AGTGTCAATATTGCTTTTGTCTCTTC 58.411 34.615 10.76 0.00 0.00 2.87
615 616 7.446625 AGTGTCAATATTGCTTTTGTCTCTTCT 59.553 33.333 10.76 0.00 0.00 2.85
616 617 8.078596 GTGTCAATATTGCTTTTGTCTCTTCTT 58.921 33.333 10.76 0.00 0.00 2.52
617 618 8.632679 TGTCAATATTGCTTTTGTCTCTTCTTT 58.367 29.630 10.76 0.00 0.00 2.52
620 621 9.897744 CAATATTGCTTTTGTCTCTTCTTTACA 57.102 29.630 1.74 0.00 0.00 2.41
621 622 9.899226 AATATTGCTTTTGTCTCTTCTTTACAC 57.101 29.630 0.00 0.00 0.00 2.90
622 623 7.573968 ATTGCTTTTGTCTCTTCTTTACACT 57.426 32.000 0.00 0.00 0.00 3.55
623 624 8.677148 ATTGCTTTTGTCTCTTCTTTACACTA 57.323 30.769 0.00 0.00 0.00 2.74
624 625 8.677148 TTGCTTTTGTCTCTTCTTTACACTAT 57.323 30.769 0.00 0.00 0.00 2.12
625 626 8.677148 TGCTTTTGTCTCTTCTTTACACTATT 57.323 30.769 0.00 0.00 0.00 1.73
626 627 8.774586 TGCTTTTGTCTCTTCTTTACACTATTC 58.225 33.333 0.00 0.00 0.00 1.75
627 628 8.774586 GCTTTTGTCTCTTCTTTACACTATTCA 58.225 33.333 0.00 0.00 0.00 2.57
630 631 7.834068 TGTCTCTTCTTTACACTATTCATGC 57.166 36.000 0.00 0.00 0.00 4.06
631 632 7.615403 TGTCTCTTCTTTACACTATTCATGCT 58.385 34.615 0.00 0.00 0.00 3.79
632 633 7.547019 TGTCTCTTCTTTACACTATTCATGCTG 59.453 37.037 0.00 0.00 0.00 4.41
633 634 7.010923 GTCTCTTCTTTACACTATTCATGCTGG 59.989 40.741 0.00 0.00 0.00 4.85
634 635 6.946340 TCTTCTTTACACTATTCATGCTGGA 58.054 36.000 0.00 0.00 0.00 3.86
635 636 7.568349 TCTTCTTTACACTATTCATGCTGGAT 58.432 34.615 0.00 0.00 0.00 3.41
636 637 8.049117 TCTTCTTTACACTATTCATGCTGGATT 58.951 33.333 0.00 0.00 0.00 3.01
637 638 8.579850 TTCTTTACACTATTCATGCTGGATTT 57.420 30.769 0.00 0.00 0.00 2.17
638 639 8.213518 TCTTTACACTATTCATGCTGGATTTC 57.786 34.615 0.00 0.00 0.00 2.17
639 640 7.828717 TCTTTACACTATTCATGCTGGATTTCA 59.171 33.333 0.00 0.00 0.00 2.69
640 641 5.824904 ACACTATTCATGCTGGATTTCAC 57.175 39.130 0.00 0.00 0.00 3.18
641 642 5.255687 ACACTATTCATGCTGGATTTCACA 58.744 37.500 0.00 0.00 0.00 3.58
642 643 5.889853 ACACTATTCATGCTGGATTTCACAT 59.110 36.000 0.00 0.00 0.00 3.21
643 644 6.379133 ACACTATTCATGCTGGATTTCACATT 59.621 34.615 0.00 0.00 0.00 2.71
644 645 7.093640 ACACTATTCATGCTGGATTTCACATTT 60.094 33.333 0.00 0.00 0.00 2.32
645 646 7.762615 CACTATTCATGCTGGATTTCACATTTT 59.237 33.333 0.00 0.00 0.00 1.82
646 647 8.316214 ACTATTCATGCTGGATTTCACATTTTT 58.684 29.630 0.00 0.00 0.00 1.94
647 648 6.788684 TTCATGCTGGATTTCACATTTTTG 57.211 33.333 0.00 0.00 0.00 2.44
648 649 5.856156 TCATGCTGGATTTCACATTTTTGT 58.144 33.333 0.00 0.00 0.00 2.83
649 650 6.289834 TCATGCTGGATTTCACATTTTTGTT 58.710 32.000 0.00 0.00 0.00 2.83
650 651 6.766944 TCATGCTGGATTTCACATTTTTGTTT 59.233 30.769 0.00 0.00 0.00 2.83
651 652 6.601741 TGCTGGATTTCACATTTTTGTTTC 57.398 33.333 0.00 0.00 0.00 2.78
652 653 6.347696 TGCTGGATTTCACATTTTTGTTTCT 58.652 32.000 0.00 0.00 0.00 2.52
653 654 6.479660 TGCTGGATTTCACATTTTTGTTTCTC 59.520 34.615 0.00 0.00 0.00 2.87
654 655 6.479660 GCTGGATTTCACATTTTTGTTTCTCA 59.520 34.615 0.00 0.00 0.00 3.27
655 656 7.011295 GCTGGATTTCACATTTTTGTTTCTCAA 59.989 33.333 0.00 0.00 0.00 3.02
656 657 8.422973 TGGATTTCACATTTTTGTTTCTCAAG 57.577 30.769 0.00 0.00 37.35 3.02
657 658 7.495279 TGGATTTCACATTTTTGTTTCTCAAGG 59.505 33.333 0.00 0.00 37.35 3.61
658 659 7.495606 GGATTTCACATTTTTGTTTCTCAAGGT 59.504 33.333 0.00 0.00 37.35 3.50
659 660 7.593875 TTTCACATTTTTGTTTCTCAAGGTG 57.406 32.000 0.00 0.00 37.35 4.00
660 661 6.279513 TCACATTTTTGTTTCTCAAGGTGT 57.720 33.333 0.00 0.00 37.35 4.16
661 662 6.098679 TCACATTTTTGTTTCTCAAGGTGTG 58.901 36.000 0.00 0.00 40.91 3.82
662 663 5.868801 CACATTTTTGTTTCTCAAGGTGTGT 59.131 36.000 0.00 0.00 38.33 3.72
663 664 6.368516 CACATTTTTGTTTCTCAAGGTGTGTT 59.631 34.615 0.00 0.00 38.33 3.32
664 665 6.934083 ACATTTTTGTTTCTCAAGGTGTGTTT 59.066 30.769 0.00 0.00 37.35 2.83
665 666 7.117667 ACATTTTTGTTTCTCAAGGTGTGTTTC 59.882 33.333 0.00 0.00 37.35 2.78
666 667 4.349663 TTGTTTCTCAAGGTGTGTTTCG 57.650 40.909 0.00 0.00 0.00 3.46
667 668 3.601435 TGTTTCTCAAGGTGTGTTTCGA 58.399 40.909 0.00 0.00 0.00 3.71
668 669 3.621268 TGTTTCTCAAGGTGTGTTTCGAG 59.379 43.478 0.00 0.00 0.00 4.04
669 670 3.536956 TTCTCAAGGTGTGTTTCGAGT 57.463 42.857 0.00 0.00 0.00 4.18
670 671 3.536956 TCTCAAGGTGTGTTTCGAGTT 57.463 42.857 0.00 0.00 0.00 3.01
671 672 3.869065 TCTCAAGGTGTGTTTCGAGTTT 58.131 40.909 0.00 0.00 0.00 2.66
672 673 3.621268 TCTCAAGGTGTGTTTCGAGTTTG 59.379 43.478 0.00 0.00 0.00 2.93
673 674 2.680841 TCAAGGTGTGTTTCGAGTTTGG 59.319 45.455 0.00 0.00 0.00 3.28
674 675 2.680841 CAAGGTGTGTTTCGAGTTTGGA 59.319 45.455 0.00 0.00 0.00 3.53
675 676 2.561569 AGGTGTGTTTCGAGTTTGGAG 58.438 47.619 0.00 0.00 0.00 3.86
676 677 1.002792 GGTGTGTTTCGAGTTTGGAGC 60.003 52.381 0.00 0.00 0.00 4.70
677 678 1.940613 GTGTGTTTCGAGTTTGGAGCT 59.059 47.619 0.00 0.00 0.00 4.09
678 679 1.939934 TGTGTTTCGAGTTTGGAGCTG 59.060 47.619 0.00 0.00 0.00 4.24
679 680 2.210116 GTGTTTCGAGTTTGGAGCTGA 58.790 47.619 0.00 0.00 0.00 4.26
680 681 2.612212 GTGTTTCGAGTTTGGAGCTGAA 59.388 45.455 0.00 0.00 0.00 3.02
681 682 3.064820 GTGTTTCGAGTTTGGAGCTGAAA 59.935 43.478 0.00 0.00 0.00 2.69
682 683 3.882888 TGTTTCGAGTTTGGAGCTGAAAT 59.117 39.130 0.00 0.00 0.00 2.17
683 684 4.338118 TGTTTCGAGTTTGGAGCTGAAATT 59.662 37.500 0.00 0.00 0.00 1.82
684 685 5.163561 TGTTTCGAGTTTGGAGCTGAAATTT 60.164 36.000 0.00 0.00 0.00 1.82
685 686 5.514274 TTCGAGTTTGGAGCTGAAATTTT 57.486 34.783 0.00 0.00 0.00 1.82
686 687 5.514274 TCGAGTTTGGAGCTGAAATTTTT 57.486 34.783 0.00 0.00 0.00 1.94
687 688 6.627395 TCGAGTTTGGAGCTGAAATTTTTA 57.373 33.333 0.00 0.00 0.00 1.52
688 689 7.214467 TCGAGTTTGGAGCTGAAATTTTTAT 57.786 32.000 0.00 0.00 0.00 1.40
689 690 7.083858 TCGAGTTTGGAGCTGAAATTTTTATG 58.916 34.615 0.00 0.00 0.00 1.90
690 691 6.308766 CGAGTTTGGAGCTGAAATTTTTATGG 59.691 38.462 0.00 0.00 0.00 2.74
691 692 5.934043 AGTTTGGAGCTGAAATTTTTATGGC 59.066 36.000 0.00 0.00 0.00 4.40
692 693 5.743636 TTGGAGCTGAAATTTTTATGGCT 57.256 34.783 0.00 0.00 0.00 4.75
693 694 5.743636 TGGAGCTGAAATTTTTATGGCTT 57.256 34.783 0.00 0.00 0.00 4.35
694 695 6.849085 TGGAGCTGAAATTTTTATGGCTTA 57.151 33.333 0.00 0.00 0.00 3.09
695 696 7.422465 TGGAGCTGAAATTTTTATGGCTTAT 57.578 32.000 0.00 0.00 0.00 1.73
696 697 8.532186 TGGAGCTGAAATTTTTATGGCTTATA 57.468 30.769 0.00 0.00 0.00 0.98
697 698 8.632679 TGGAGCTGAAATTTTTATGGCTTATAG 58.367 33.333 0.00 0.00 0.00 1.31
698 699 8.633561 GGAGCTGAAATTTTTATGGCTTATAGT 58.366 33.333 0.00 0.00 0.00 2.12
699 700 9.670719 GAGCTGAAATTTTTATGGCTTATAGTC 57.329 33.333 0.00 0.00 0.00 2.59
700 701 9.189156 AGCTGAAATTTTTATGGCTTATAGTCA 57.811 29.630 0.00 0.00 32.55 3.41
701 702 9.237846 GCTGAAATTTTTATGGCTTATAGTCAC 57.762 33.333 0.00 0.00 29.65 3.67
710 711 8.978874 TTATGGCTTATAGTCACATTCATTGT 57.021 30.769 0.00 0.00 39.91 2.71
712 713 8.978874 ATGGCTTATAGTCACATTCATTGTAA 57.021 30.769 0.00 0.00 36.57 2.41
713 714 8.800370 TGGCTTATAGTCACATTCATTGTAAA 57.200 30.769 0.00 0.00 36.57 2.01
714 715 8.673711 TGGCTTATAGTCACATTCATTGTAAAC 58.326 33.333 0.00 0.00 36.57 2.01
715 716 8.673711 GGCTTATAGTCACATTCATTGTAAACA 58.326 33.333 0.00 0.00 36.57 2.83
779 780 6.074544 TGTTTTTAAACATTGGAGTACCGG 57.925 37.500 0.00 0.00 43.45 5.28
780 781 5.009811 TGTTTTTAAACATTGGAGTACCGGG 59.990 40.000 6.32 0.00 43.45 5.73
781 782 4.637387 TTTAAACATTGGAGTACCGGGA 57.363 40.909 6.32 0.00 39.42 5.14
782 783 2.781681 AAACATTGGAGTACCGGGAG 57.218 50.000 6.32 0.00 39.42 4.30
783 784 1.652947 AACATTGGAGTACCGGGAGT 58.347 50.000 6.32 0.00 39.42 3.85
784 785 2.537633 ACATTGGAGTACCGGGAGTA 57.462 50.000 6.32 0.00 39.42 2.59
804 805 3.354678 CCAAGTTTGGGAGCACCG 58.645 61.111 2.87 0.00 44.70 4.94
805 806 2.268076 CCAAGTTTGGGAGCACCGG 61.268 63.158 0.00 0.00 44.70 5.28
806 807 1.228124 CAAGTTTGGGAGCACCGGA 60.228 57.895 9.46 0.00 44.64 5.14
807 808 0.609131 CAAGTTTGGGAGCACCGGAT 60.609 55.000 9.46 0.00 44.64 4.18
808 809 0.988832 AAGTTTGGGAGCACCGGATA 59.011 50.000 9.46 0.00 44.64 2.59
809 810 0.252197 AGTTTGGGAGCACCGGATAC 59.748 55.000 9.46 0.00 44.64 2.24
810 811 0.252197 GTTTGGGAGCACCGGATACT 59.748 55.000 9.46 0.83 44.64 2.12
811 812 0.988832 TTTGGGAGCACCGGATACTT 59.011 50.000 9.46 0.00 44.64 2.24
812 813 0.988832 TTGGGAGCACCGGATACTTT 59.011 50.000 9.46 0.00 44.64 2.66
813 814 0.539986 TGGGAGCACCGGATACTTTC 59.460 55.000 9.46 0.00 44.64 2.62
814 815 0.179054 GGGAGCACCGGATACTTTCC 60.179 60.000 9.46 6.05 41.59 3.13
847 848 1.001268 CTAGCGAGCCTTCATAGCGAA 60.001 52.381 0.00 0.00 34.64 4.70
848 849 0.528684 AGCGAGCCTTCATAGCGAAC 60.529 55.000 0.00 0.00 34.64 3.95
860 862 0.963856 TAGCGAACCCAGAGAGCGAA 60.964 55.000 0.00 0.00 0.00 4.70
919 922 4.394300 CAGTAGCTTCAGACAAAAGATGGG 59.606 45.833 0.00 0.00 0.00 4.00
951 954 2.147958 CTATCTTCCTCCTCTCCGACG 58.852 57.143 0.00 0.00 0.00 5.12
952 955 1.104577 ATCTTCCTCCTCTCCGACGC 61.105 60.000 0.00 0.00 0.00 5.19
955 958 3.522731 CCTCCTCTCCGACGCTGG 61.523 72.222 0.00 0.00 0.00 4.85
956 959 2.438614 CTCCTCTCCGACGCTGGA 60.439 66.667 0.00 0.00 36.37 3.86
962 965 4.373116 TCCGACGCTGGAGCAACC 62.373 66.667 0.00 0.00 42.21 3.77
1057 1066 3.322466 CCAACCACCTCCTCCGCT 61.322 66.667 0.00 0.00 0.00 5.52
1060 1069 1.985116 AACCACCTCCTCCGCTCTC 60.985 63.158 0.00 0.00 0.00 3.20
1074 1083 1.819905 CTCTCCTCCGCTCCCTTTC 59.180 63.158 0.00 0.00 0.00 2.62
1192 1204 2.585247 GGCACTACGCGTCATCCC 60.585 66.667 18.63 9.27 43.84 3.85
1200 1212 1.290324 CGCGTCATCCCTATCCAGG 59.710 63.158 0.00 0.00 42.22 4.45
1206 1218 2.574955 ATCCCTATCCAGGCGACGC 61.575 63.158 12.43 12.43 41.08 5.19
1239 1251 2.183300 CCGCCGATGTTTCCGAGA 59.817 61.111 0.00 0.00 0.00 4.04
1311 1323 2.592308 GAAGAAGCCCTGCCCGAT 59.408 61.111 0.00 0.00 0.00 4.18
1349 1361 0.319900 ATAATAGCCTCCGCACGCTG 60.320 55.000 0.00 0.00 36.53 5.18
1386 1398 3.245052 ACTTGTTGAATTCCTAGCCTGCT 60.245 43.478 2.27 0.00 0.00 4.24
1407 1419 5.880332 TGCTTCTCTAATTACGAATGGCTTT 59.120 36.000 0.00 0.00 0.00 3.51
1462 1474 1.138247 GAAGGCAATGAAGCTGGCG 59.862 57.895 0.00 0.00 43.75 5.69
1558 1570 1.008079 GGTGTCTGTGCTGCTTTGC 60.008 57.895 0.00 0.00 0.00 3.68
1590 1602 2.503895 ATCAGGAAGCTGAACAAGGG 57.496 50.000 0.00 0.00 36.88 3.95
1673 1685 3.120442 CCAAATTCCCGTTGTAAGACGTC 60.120 47.826 7.70 7.70 41.26 4.34
1736 1776 8.386606 CAGATCTTAGTATTCACTTGTTGCTTC 58.613 37.037 0.00 0.00 36.14 3.86
1890 1932 4.702131 AGCACCACATTTGTTCTCCTTATC 59.298 41.667 0.00 0.00 0.00 1.75
1891 1933 4.458989 GCACCACATTTGTTCTCCTTATCA 59.541 41.667 0.00 0.00 0.00 2.15
1943 1986 4.150980 GTGTAGGTCTCGTCTGATCTATCG 59.849 50.000 0.00 0.00 32.95 2.92
1961 2004 0.109458 CGTTGACCGTAGCAGTAGCA 60.109 55.000 0.00 0.00 45.49 3.49
1993 2036 5.587388 AATGGTGGTTTTGAGCTCATATG 57.413 39.130 19.04 0.00 0.00 1.78
1996 2039 6.000246 TGGTGGTTTTGAGCTCATATGATA 58.000 37.500 19.04 0.00 0.00 2.15
2114 2158 6.014156 ACCAGGTAATAGTAAGATGGAGATGC 60.014 42.308 0.00 0.00 0.00 3.91
2337 2394 1.076995 GAGGCGGCCTTACCCAAAT 60.077 57.895 24.71 0.00 31.76 2.32
2500 2559 4.014406 TGATCGCTTGACTACCTTCTGTA 58.986 43.478 0.00 0.00 0.00 2.74
2508 2567 7.254117 CGCTTGACTACCTTCTGTATACAAATG 60.254 40.741 7.06 0.00 30.09 2.32
2818 2881 1.146263 GATGGTAGGTCGCCCTTGG 59.854 63.158 0.00 0.00 42.66 3.61
2819 2882 2.942648 GATGGTAGGTCGCCCTTGGC 62.943 65.000 0.00 0.00 46.75 4.52
3113 3207 1.741401 TGAAGGACGCCTGCATTCG 60.741 57.895 2.72 6.24 33.50 3.34
3298 3392 9.901172 AGTCTTTCCTTAACAATATTACCGATT 57.099 29.630 0.00 0.00 0.00 3.34
3685 3913 6.629515 GCTGGTGTATTTCTACAGGTACATCA 60.630 42.308 0.00 0.00 38.51 3.07
3844 4080 6.048732 TGTGTCCAATTGCTCTACTGAATA 57.951 37.500 0.00 0.00 0.00 1.75
3957 4806 6.292919 GCCCTCGTCATTGTCATTCTTTATAC 60.293 42.308 0.00 0.00 0.00 1.47
4245 5095 1.162181 CGAGCATGGCGATGGATTGT 61.162 55.000 10.93 0.00 0.00 2.71
4397 5247 0.618458 AACGGGCATTCTAGGAGCAA 59.382 50.000 0.00 0.00 0.00 3.91
4996 5854 4.216411 TGCAAGGAGGTAGTGATTTACC 57.784 45.455 0.00 0.00 42.84 2.85
4997 5855 3.054655 TGCAAGGAGGTAGTGATTTACCC 60.055 47.826 0.00 0.00 43.42 3.69
4998 5856 3.200165 GCAAGGAGGTAGTGATTTACCCT 59.800 47.826 0.00 0.00 43.42 4.34
4999 5857 4.324331 GCAAGGAGGTAGTGATTTACCCTT 60.324 45.833 0.00 0.00 43.42 3.95
5000 5858 5.806734 GCAAGGAGGTAGTGATTTACCCTTT 60.807 44.000 0.00 0.00 43.42 3.11
5001 5859 6.246163 CAAGGAGGTAGTGATTTACCCTTTT 58.754 40.000 0.00 0.00 43.42 2.27
5002 5860 7.399634 CAAGGAGGTAGTGATTTACCCTTTTA 58.600 38.462 0.00 0.00 43.42 1.52
5003 5861 6.955364 AGGAGGTAGTGATTTACCCTTTTAC 58.045 40.000 0.00 0.00 43.42 2.01
5075 5948 0.179065 CGCCTGCTCATCTTCCATCA 60.179 55.000 0.00 0.00 0.00 3.07
5457 6880 9.967346 GGTTTTTGCTAGATAAACTTCTCTTTT 57.033 29.630 0.00 0.00 33.44 2.27
5732 7155 4.511454 TGAAGATTTTTCTGTCCTCACACG 59.489 41.667 0.00 0.00 0.00 4.49
5776 7199 6.438425 AGAAGGGAAAGCATGTGTTATCAAAT 59.562 34.615 0.00 0.00 0.00 2.32
5809 7232 3.258872 TGCAATTGAGATTGTTCCCCTTG 59.741 43.478 10.34 0.00 43.67 3.61
5892 7315 3.296322 TGAATTTGTTCCCGTCAATGC 57.704 42.857 0.00 0.00 0.00 3.56
6358 7893 4.381292 GGCAAATTTGATCTCCTTCAGGTG 60.381 45.833 22.31 0.00 36.34 4.00
6390 7925 7.769272 TTTGAAGTTTAAAACCATGCTCTTG 57.231 32.000 0.00 0.00 0.00 3.02
6391 7926 6.463995 TGAAGTTTAAAACCATGCTCTTGT 57.536 33.333 0.00 0.00 0.00 3.16
6392 7927 7.575414 TGAAGTTTAAAACCATGCTCTTGTA 57.425 32.000 0.00 0.00 0.00 2.41
6567 8107 1.779061 TTGTGGCCCTTGACTCCCTC 61.779 60.000 0.00 0.00 0.00 4.30
6650 8190 7.196331 GCAATACTGATTTTCCACAGAATACC 58.804 38.462 0.00 0.00 37.54 2.73
6715 8255 0.111639 GGTTCCCCTAACTTGTGGCA 59.888 55.000 0.00 0.00 38.23 4.92
6742 8289 7.284716 TCGTGTGTATAAGAGAATAGATGGTGT 59.715 37.037 0.00 0.00 0.00 4.16
6743 8290 8.565416 CGTGTGTATAAGAGAATAGATGGTGTA 58.435 37.037 0.00 0.00 0.00 2.90
6744 8291 9.680315 GTGTGTATAAGAGAATAGATGGTGTAC 57.320 37.037 0.00 0.00 0.00 2.90
6745 8292 8.857098 TGTGTATAAGAGAATAGATGGTGTACC 58.143 37.037 0.00 0.00 0.00 3.34
7056 9037 2.879756 GCAGGTAAATTGGCACTCCTGA 60.880 50.000 19.47 0.00 43.28 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 4.797471 TGAGCGAGTTTTCATGAATTTGG 58.203 39.130 9.40 0.98 0.00 3.28
3 4 7.951530 AATTTGAGCGAGTTTTCATGAATTT 57.048 28.000 9.40 0.00 0.00 1.82
4 5 7.652909 TCAAATTTGAGCGAGTTTTCATGAATT 59.347 29.630 16.91 0.00 32.50 2.17
5 6 7.147312 TCAAATTTGAGCGAGTTTTCATGAAT 58.853 30.769 16.91 0.00 32.50 2.57
6 7 6.502652 TCAAATTTGAGCGAGTTTTCATGAA 58.497 32.000 16.91 3.38 32.50 2.57
8 9 6.372014 CTCAAATTTGAGCGAGTTTTCATG 57.628 37.500 29.90 7.83 46.97 3.07
74 75 8.550376 GCATTTAAAAGAGCTTGTGAATTCAAA 58.450 29.630 10.35 0.76 0.00 2.69
75 76 7.710044 TGCATTTAAAAGAGCTTGTGAATTCAA 59.290 29.630 10.35 0.00 0.00 2.69
76 77 7.169645 GTGCATTTAAAAGAGCTTGTGAATTCA 59.830 33.333 3.38 3.38 0.00 2.57
77 78 7.383300 AGTGCATTTAAAAGAGCTTGTGAATTC 59.617 33.333 0.00 0.00 0.00 2.17
78 79 7.212274 AGTGCATTTAAAAGAGCTTGTGAATT 58.788 30.769 10.63 0.00 0.00 2.17
79 80 6.752168 AGTGCATTTAAAAGAGCTTGTGAAT 58.248 32.000 10.63 0.00 0.00 2.57
80 81 6.147864 AGTGCATTTAAAAGAGCTTGTGAA 57.852 33.333 10.63 0.00 0.00 3.18
81 82 5.772825 AGTGCATTTAAAAGAGCTTGTGA 57.227 34.783 10.63 0.00 0.00 3.58
82 83 6.833342 AAAGTGCATTTAAAAGAGCTTGTG 57.167 33.333 0.00 0.00 0.00 3.33
83 84 7.848223 AAAAAGTGCATTTAAAAGAGCTTGT 57.152 28.000 0.00 0.39 0.00 3.16
187 188 9.880157 CAGATTTTGAATAATTGTTCAGGGATT 57.120 29.630 15.93 5.39 39.13 3.01
188 189 9.039165 ACAGATTTTGAATAATTGTTCAGGGAT 57.961 29.630 15.93 11.71 39.13 3.85
189 190 8.306038 CACAGATTTTGAATAATTGTTCAGGGA 58.694 33.333 15.93 8.11 39.13 4.20
190 191 8.306038 TCACAGATTTTGAATAATTGTTCAGGG 58.694 33.333 15.93 6.62 39.13 4.45
191 192 9.695526 TTCACAGATTTTGAATAATTGTTCAGG 57.304 29.630 15.93 7.24 39.13 3.86
202 203 9.603921 AATCAAAAGTGTTCACAGATTTTGAAT 57.396 25.926 23.63 17.78 45.49 2.57
203 204 9.434420 AAATCAAAAGTGTTCACAGATTTTGAA 57.566 25.926 23.63 14.42 45.49 2.69
204 205 9.086336 GAAATCAAAAGTGTTCACAGATTTTGA 57.914 29.630 22.81 22.81 45.90 2.69
205 206 8.871862 TGAAATCAAAAGTGTTCACAGATTTTG 58.128 29.630 16.98 16.98 40.93 2.44
206 207 9.603921 ATGAAATCAAAAGTGTTCACAGATTTT 57.396 25.926 17.37 9.51 35.20 1.82
207 208 9.252962 GATGAAATCAAAAGTGTTCACAGATTT 57.747 29.630 16.82 16.82 44.70 2.17
208 209 8.807667 GATGAAATCAAAAGTGTTCACAGATT 57.192 30.769 5.74 6.47 44.70 2.40
239 240 9.664332 TGATGAAAAAGGAGTTGATTTTTGAAA 57.336 25.926 0.76 0.00 38.40 2.69
240 241 9.316730 CTGATGAAAAAGGAGTTGATTTTTGAA 57.683 29.630 0.76 0.00 38.40 2.69
241 242 8.694540 TCTGATGAAAAAGGAGTTGATTTTTGA 58.305 29.630 0.76 0.00 38.40 2.69
242 243 8.876275 TCTGATGAAAAAGGAGTTGATTTTTG 57.124 30.769 0.76 0.00 38.40 2.44
243 244 8.917088 TCTCTGATGAAAAAGGAGTTGATTTTT 58.083 29.630 0.00 0.00 40.37 1.94
244 245 8.469309 TCTCTGATGAAAAAGGAGTTGATTTT 57.531 30.769 0.00 0.00 0.00 1.82
245 246 8.469309 TTCTCTGATGAAAAAGGAGTTGATTT 57.531 30.769 0.00 0.00 0.00 2.17
246 247 8.647256 ATTCTCTGATGAAAAAGGAGTTGATT 57.353 30.769 0.00 0.00 0.00 2.57
247 248 9.745018 TTATTCTCTGATGAAAAAGGAGTTGAT 57.255 29.630 0.00 0.00 0.00 2.57
248 249 9.224267 CTTATTCTCTGATGAAAAAGGAGTTGA 57.776 33.333 0.00 0.00 0.00 3.18
249 250 9.224267 TCTTATTCTCTGATGAAAAAGGAGTTG 57.776 33.333 0.00 0.00 0.00 3.16
250 251 9.447157 CTCTTATTCTCTGATGAAAAAGGAGTT 57.553 33.333 0.00 0.00 0.00 3.01
251 252 8.820831 TCTCTTATTCTCTGATGAAAAAGGAGT 58.179 33.333 0.00 0.00 0.00 3.85
252 253 9.316730 CTCTCTTATTCTCTGATGAAAAAGGAG 57.683 37.037 0.00 0.00 0.00 3.69
253 254 8.263640 CCTCTCTTATTCTCTGATGAAAAAGGA 58.736 37.037 0.00 0.00 0.00 3.36
254 255 8.263640 TCCTCTCTTATTCTCTGATGAAAAAGG 58.736 37.037 0.00 0.00 0.00 3.11
255 256 9.664332 TTCCTCTCTTATTCTCTGATGAAAAAG 57.336 33.333 0.00 0.00 0.00 2.27
257 258 9.610705 CATTCCTCTCTTATTCTCTGATGAAAA 57.389 33.333 0.00 0.00 0.00 2.29
258 259 8.985922 TCATTCCTCTCTTATTCTCTGATGAAA 58.014 33.333 0.00 0.00 0.00 2.69
259 260 8.544687 TCATTCCTCTCTTATTCTCTGATGAA 57.455 34.615 0.00 0.00 0.00 2.57
260 261 7.255906 GCTCATTCCTCTCTTATTCTCTGATGA 60.256 40.741 0.00 0.00 0.00 2.92
261 262 6.869913 GCTCATTCCTCTCTTATTCTCTGATG 59.130 42.308 0.00 0.00 0.00 3.07
262 263 6.554228 TGCTCATTCCTCTCTTATTCTCTGAT 59.446 38.462 0.00 0.00 0.00 2.90
263 264 5.896106 TGCTCATTCCTCTCTTATTCTCTGA 59.104 40.000 0.00 0.00 0.00 3.27
264 265 6.159299 TGCTCATTCCTCTCTTATTCTCTG 57.841 41.667 0.00 0.00 0.00 3.35
265 266 5.305128 CCTGCTCATTCCTCTCTTATTCTCT 59.695 44.000 0.00 0.00 0.00 3.10
266 267 5.304101 TCCTGCTCATTCCTCTCTTATTCTC 59.696 44.000 0.00 0.00 0.00 2.87
267 268 5.215069 TCCTGCTCATTCCTCTCTTATTCT 58.785 41.667 0.00 0.00 0.00 2.40
268 269 5.543507 TCCTGCTCATTCCTCTCTTATTC 57.456 43.478 0.00 0.00 0.00 1.75
269 270 5.965033 TTCCTGCTCATTCCTCTCTTATT 57.035 39.130 0.00 0.00 0.00 1.40
270 271 5.965033 TTTCCTGCTCATTCCTCTCTTAT 57.035 39.130 0.00 0.00 0.00 1.73
271 272 5.762179 TTTTCCTGCTCATTCCTCTCTTA 57.238 39.130 0.00 0.00 0.00 2.10
272 273 4.647564 TTTTCCTGCTCATTCCTCTCTT 57.352 40.909 0.00 0.00 0.00 2.85
273 274 4.647564 TTTTTCCTGCTCATTCCTCTCT 57.352 40.909 0.00 0.00 0.00 3.10
291 292 4.969484 AGTTCACCTGACCGACTATTTTT 58.031 39.130 0.00 0.00 0.00 1.94
292 293 4.618920 AGTTCACCTGACCGACTATTTT 57.381 40.909 0.00 0.00 0.00 1.82
293 294 5.733620 TTAGTTCACCTGACCGACTATTT 57.266 39.130 0.00 0.00 0.00 1.40
294 295 5.421056 TGATTAGTTCACCTGACCGACTATT 59.579 40.000 0.00 0.00 0.00 1.73
295 296 4.954202 TGATTAGTTCACCTGACCGACTAT 59.046 41.667 0.00 0.00 0.00 2.12
296 297 4.338012 TGATTAGTTCACCTGACCGACTA 58.662 43.478 0.00 0.00 0.00 2.59
297 298 3.162666 TGATTAGTTCACCTGACCGACT 58.837 45.455 0.00 0.00 0.00 4.18
298 299 3.587797 TGATTAGTTCACCTGACCGAC 57.412 47.619 0.00 0.00 0.00 4.79
299 300 3.576982 ACTTGATTAGTTCACCTGACCGA 59.423 43.478 0.00 0.00 31.29 4.69
300 301 3.926616 ACTTGATTAGTTCACCTGACCG 58.073 45.455 0.00 0.00 31.29 4.79
301 302 7.923414 ATAAACTTGATTAGTTCACCTGACC 57.077 36.000 0.00 0.00 46.34 4.02
304 305 9.410556 CCAAAATAAACTTGATTAGTTCACCTG 57.589 33.333 0.00 0.00 46.34 4.00
305 306 8.088365 GCCAAAATAAACTTGATTAGTTCACCT 58.912 33.333 0.00 0.00 46.34 4.00
306 307 7.870445 TGCCAAAATAAACTTGATTAGTTCACC 59.130 33.333 0.00 0.00 46.34 4.02
307 308 8.810652 TGCCAAAATAAACTTGATTAGTTCAC 57.189 30.769 0.00 0.00 46.34 3.18
308 309 9.823647 TTTGCCAAAATAAACTTGATTAGTTCA 57.176 25.926 0.00 0.00 46.34 3.18
310 311 9.051679 GGTTTGCCAAAATAAACTTGATTAGTT 57.948 29.630 0.00 0.00 40.79 2.24
311 312 8.207545 TGGTTTGCCAAAATAAACTTGATTAGT 58.792 29.630 0.00 0.00 42.83 2.24
312 313 8.600449 TGGTTTGCCAAAATAAACTTGATTAG 57.400 30.769 0.00 0.00 42.83 1.73
328 329 2.488347 GGGAGTAGTTCTTGGTTTGCCA 60.488 50.000 0.00 0.00 44.38 4.92
329 330 2.160205 GGGAGTAGTTCTTGGTTTGCC 58.840 52.381 0.00 0.00 0.00 4.52
330 331 3.075148 GAGGGAGTAGTTCTTGGTTTGC 58.925 50.000 0.00 0.00 0.00 3.68
331 332 4.625607 AGAGGGAGTAGTTCTTGGTTTG 57.374 45.455 0.00 0.00 0.00 2.93
332 333 5.425862 GGATAGAGGGAGTAGTTCTTGGTTT 59.574 44.000 0.00 0.00 0.00 3.27
333 334 4.963628 GGATAGAGGGAGTAGTTCTTGGTT 59.036 45.833 0.00 0.00 0.00 3.67
334 335 4.548669 GGATAGAGGGAGTAGTTCTTGGT 58.451 47.826 0.00 0.00 0.00 3.67
335 336 3.898741 GGGATAGAGGGAGTAGTTCTTGG 59.101 52.174 0.00 0.00 0.00 3.61
336 337 4.547671 TGGGATAGAGGGAGTAGTTCTTG 58.452 47.826 0.00 0.00 0.00 3.02
337 338 4.901785 TGGGATAGAGGGAGTAGTTCTT 57.098 45.455 0.00 0.00 0.00 2.52
338 339 6.547396 TTATGGGATAGAGGGAGTAGTTCT 57.453 41.667 0.00 0.00 0.00 3.01
343 344 9.417561 CGTTTATATTATGGGATAGAGGGAGTA 57.582 37.037 0.00 0.00 0.00 2.59
344 345 7.147707 GCGTTTATATTATGGGATAGAGGGAGT 60.148 40.741 0.00 0.00 0.00 3.85
345 346 7.070074 AGCGTTTATATTATGGGATAGAGGGAG 59.930 40.741 0.00 0.00 0.00 4.30
346 347 6.901300 AGCGTTTATATTATGGGATAGAGGGA 59.099 38.462 0.00 0.00 0.00 4.20
347 348 7.070074 AGAGCGTTTATATTATGGGATAGAGGG 59.930 40.741 0.00 0.00 0.00 4.30
348 349 8.012957 AGAGCGTTTATATTATGGGATAGAGG 57.987 38.462 0.00 0.00 0.00 3.69
362 363 8.671921 CCGTCTCCTAATATAAGAGCGTTTATA 58.328 37.037 5.73 5.73 31.91 0.98
363 364 7.392673 TCCGTCTCCTAATATAAGAGCGTTTAT 59.607 37.037 0.00 2.15 0.00 1.40
364 365 6.712095 TCCGTCTCCTAATATAAGAGCGTTTA 59.288 38.462 0.00 0.00 0.00 2.01
365 366 5.533903 TCCGTCTCCTAATATAAGAGCGTTT 59.466 40.000 0.00 0.00 0.00 3.60
366 367 5.068636 TCCGTCTCCTAATATAAGAGCGTT 58.931 41.667 0.00 0.00 0.00 4.84
367 368 4.649692 TCCGTCTCCTAATATAAGAGCGT 58.350 43.478 0.00 0.00 0.00 5.07
368 369 4.095185 CCTCCGTCTCCTAATATAAGAGCG 59.905 50.000 0.00 0.00 0.00 5.03
369 370 4.399934 CCCTCCGTCTCCTAATATAAGAGC 59.600 50.000 0.00 0.00 0.00 4.09
370 371 5.817784 TCCCTCCGTCTCCTAATATAAGAG 58.182 45.833 0.00 0.00 0.00 2.85
371 372 5.312708 ACTCCCTCCGTCTCCTAATATAAGA 59.687 44.000 0.00 0.00 0.00 2.10
372 373 5.572252 ACTCCCTCCGTCTCCTAATATAAG 58.428 45.833 0.00 0.00 0.00 1.73
373 374 5.595814 ACTCCCTCCGTCTCCTAATATAA 57.404 43.478 0.00 0.00 0.00 0.98
374 375 5.789575 ACTACTCCCTCCGTCTCCTAATATA 59.210 44.000 0.00 0.00 0.00 0.86
375 376 4.602732 ACTACTCCCTCCGTCTCCTAATAT 59.397 45.833 0.00 0.00 0.00 1.28
376 377 3.979347 ACTACTCCCTCCGTCTCCTAATA 59.021 47.826 0.00 0.00 0.00 0.98
377 378 2.784682 ACTACTCCCTCCGTCTCCTAAT 59.215 50.000 0.00 0.00 0.00 1.73
378 379 2.172293 GACTACTCCCTCCGTCTCCTAA 59.828 54.545 0.00 0.00 0.00 2.69
379 380 1.767681 GACTACTCCCTCCGTCTCCTA 59.232 57.143 0.00 0.00 0.00 2.94
380 381 0.547553 GACTACTCCCTCCGTCTCCT 59.452 60.000 0.00 0.00 0.00 3.69
381 382 0.814812 CGACTACTCCCTCCGTCTCC 60.815 65.000 0.00 0.00 0.00 3.71
382 383 0.814812 CCGACTACTCCCTCCGTCTC 60.815 65.000 0.00 0.00 0.00 3.36
383 384 1.224039 CCGACTACTCCCTCCGTCT 59.776 63.158 0.00 0.00 0.00 4.18
384 385 1.823041 CCCGACTACTCCCTCCGTC 60.823 68.421 0.00 0.00 0.00 4.79
385 386 1.856539 TTCCCGACTACTCCCTCCGT 61.857 60.000 0.00 0.00 0.00 4.69
386 387 0.682209 TTTCCCGACTACTCCCTCCG 60.682 60.000 0.00 0.00 0.00 4.63
387 388 1.112950 CTTTCCCGACTACTCCCTCC 58.887 60.000 0.00 0.00 0.00 4.30
388 389 1.849977 ACTTTCCCGACTACTCCCTC 58.150 55.000 0.00 0.00 0.00 4.30
389 390 3.564264 GATACTTTCCCGACTACTCCCT 58.436 50.000 0.00 0.00 0.00 4.20
390 391 2.627221 GGATACTTTCCCGACTACTCCC 59.373 54.545 0.00 0.00 38.75 4.30
391 392 3.294214 TGGATACTTTCCCGACTACTCC 58.706 50.000 0.00 0.00 44.77 3.85
392 393 3.952967 ACTGGATACTTTCCCGACTACTC 59.047 47.826 0.00 0.00 44.77 2.59
393 394 3.700038 CACTGGATACTTTCCCGACTACT 59.300 47.826 0.00 0.00 44.77 2.57
394 395 3.737355 GCACTGGATACTTTCCCGACTAC 60.737 52.174 0.00 0.00 44.77 2.73
395 396 2.429610 GCACTGGATACTTTCCCGACTA 59.570 50.000 0.00 0.00 44.77 2.59
396 397 1.207329 GCACTGGATACTTTCCCGACT 59.793 52.381 0.00 0.00 44.77 4.18
397 398 1.207329 AGCACTGGATACTTTCCCGAC 59.793 52.381 0.00 0.00 44.77 4.79
398 399 1.480954 GAGCACTGGATACTTTCCCGA 59.519 52.381 0.00 0.00 44.77 5.14
399 400 1.473434 GGAGCACTGGATACTTTCCCG 60.473 57.143 0.00 0.00 44.77 5.14
400 401 1.134068 GGGAGCACTGGATACTTTCCC 60.134 57.143 0.00 0.00 44.77 3.97
401 402 1.559682 TGGGAGCACTGGATACTTTCC 59.440 52.381 0.00 0.00 45.69 3.13
402 403 2.911484 CTGGGAGCACTGGATACTTTC 58.089 52.381 0.00 0.00 37.61 2.62
403 404 1.065126 GCTGGGAGCACTGGATACTTT 60.065 52.381 0.00 0.00 41.89 2.66
404 405 0.543749 GCTGGGAGCACTGGATACTT 59.456 55.000 0.00 0.00 41.89 2.24
405 406 1.341156 GGCTGGGAGCACTGGATACT 61.341 60.000 0.00 0.00 44.75 2.12
406 407 1.147153 GGCTGGGAGCACTGGATAC 59.853 63.158 0.00 0.00 44.75 2.24
407 408 0.621571 AAGGCTGGGAGCACTGGATA 60.622 55.000 0.00 0.00 44.75 2.59
408 409 0.621571 TAAGGCTGGGAGCACTGGAT 60.622 55.000 0.00 0.00 44.75 3.41
409 410 1.229496 TAAGGCTGGGAGCACTGGA 60.229 57.895 0.00 0.00 44.75 3.86
410 411 1.222936 CTAAGGCTGGGAGCACTGG 59.777 63.158 0.00 0.00 44.75 4.00
411 412 1.222936 CCTAAGGCTGGGAGCACTG 59.777 63.158 1.01 0.00 44.75 3.66
412 413 3.732938 CCTAAGGCTGGGAGCACT 58.267 61.111 1.01 0.00 44.75 4.40
429 430 1.065418 CATTGGACCACTGGGAGTACC 60.065 57.143 3.90 0.00 38.05 3.34
430 431 1.628846 ACATTGGACCACTGGGAGTAC 59.371 52.381 15.61 0.00 38.05 2.73
431 432 1.906574 GACATTGGACCACTGGGAGTA 59.093 52.381 15.61 0.00 38.05 2.59
432 433 0.693049 GACATTGGACCACTGGGAGT 59.307 55.000 15.61 0.00 38.05 3.85
433 434 0.692476 TGACATTGGACCACTGGGAG 59.308 55.000 15.61 0.00 38.05 4.30
434 435 1.144691 TTGACATTGGACCACTGGGA 58.855 50.000 15.61 0.00 38.05 4.37
435 436 1.993956 TTTGACATTGGACCACTGGG 58.006 50.000 15.61 0.00 41.29 4.45
485 486 8.641541 ACATTCCTTGTGTACATTCTCATTTTT 58.358 29.630 0.00 0.00 37.11 1.94
486 487 8.181904 ACATTCCTTGTGTACATTCTCATTTT 57.818 30.769 0.00 0.00 37.11 1.82
487 488 7.448161 TGACATTCCTTGTGTACATTCTCATTT 59.552 33.333 0.00 0.00 39.18 2.32
488 489 6.942005 TGACATTCCTTGTGTACATTCTCATT 59.058 34.615 0.00 0.00 39.18 2.57
489 490 6.372659 GTGACATTCCTTGTGTACATTCTCAT 59.627 38.462 0.00 0.00 39.18 2.90
490 491 5.700832 GTGACATTCCTTGTGTACATTCTCA 59.299 40.000 0.00 0.00 39.18 3.27
491 492 5.934625 AGTGACATTCCTTGTGTACATTCTC 59.065 40.000 0.00 0.00 39.18 2.87
492 493 5.869579 AGTGACATTCCTTGTGTACATTCT 58.130 37.500 0.00 0.00 39.18 2.40
493 494 6.649141 TGTAGTGACATTCCTTGTGTACATTC 59.351 38.462 0.00 0.00 39.18 2.67
494 495 6.530120 TGTAGTGACATTCCTTGTGTACATT 58.470 36.000 0.00 0.00 39.18 2.71
495 496 6.109156 TGTAGTGACATTCCTTGTGTACAT 57.891 37.500 0.00 0.00 39.18 2.29
496 497 5.538849 TGTAGTGACATTCCTTGTGTACA 57.461 39.130 0.00 0.00 39.18 2.90
497 498 5.581085 GGATGTAGTGACATTCCTTGTGTAC 59.419 44.000 0.00 0.00 46.64 2.90
498 499 5.483937 AGGATGTAGTGACATTCCTTGTGTA 59.516 40.000 0.00 0.00 46.64 2.90
499 500 4.287067 AGGATGTAGTGACATTCCTTGTGT 59.713 41.667 0.00 0.00 46.64 3.72
500 501 4.836825 AGGATGTAGTGACATTCCTTGTG 58.163 43.478 0.00 0.00 46.64 3.33
501 502 4.780021 AGAGGATGTAGTGACATTCCTTGT 59.220 41.667 9.14 0.00 46.64 3.16
502 503 5.350504 AGAGGATGTAGTGACATTCCTTG 57.649 43.478 9.14 0.00 46.64 3.61
503 504 7.496346 TTTAGAGGATGTAGTGACATTCCTT 57.504 36.000 9.14 4.82 46.64 3.36
504 505 7.496346 TTTTAGAGGATGTAGTGACATTCCT 57.504 36.000 8.07 8.07 46.64 3.36
505 506 8.738645 ATTTTTAGAGGATGTAGTGACATTCC 57.261 34.615 0.00 0.00 46.64 3.01
509 510 9.219603 CTGAAATTTTTAGAGGATGTAGTGACA 57.780 33.333 0.00 0.00 40.72 3.58
510 511 8.669243 CCTGAAATTTTTAGAGGATGTAGTGAC 58.331 37.037 2.68 0.00 0.00 3.67
511 512 8.383175 ACCTGAAATTTTTAGAGGATGTAGTGA 58.617 33.333 11.41 0.00 0.00 3.41
512 513 8.567285 ACCTGAAATTTTTAGAGGATGTAGTG 57.433 34.615 11.41 0.00 0.00 2.74
513 514 7.829706 GGACCTGAAATTTTTAGAGGATGTAGT 59.170 37.037 11.41 0.00 0.00 2.73
514 515 7.829211 TGGACCTGAAATTTTTAGAGGATGTAG 59.171 37.037 11.41 0.00 0.00 2.74
515 516 7.695055 TGGACCTGAAATTTTTAGAGGATGTA 58.305 34.615 11.41 0.00 0.00 2.29
516 517 6.552008 TGGACCTGAAATTTTTAGAGGATGT 58.448 36.000 11.41 0.00 0.00 3.06
517 518 7.466746 TTGGACCTGAAATTTTTAGAGGATG 57.533 36.000 11.41 0.00 0.00 3.51
518 519 8.491045 TTTTGGACCTGAAATTTTTAGAGGAT 57.509 30.769 11.41 0.37 0.00 3.24
519 520 7.906199 TTTTGGACCTGAAATTTTTAGAGGA 57.094 32.000 11.41 0.00 0.00 3.71
520 521 8.992073 CAATTTTGGACCTGAAATTTTTAGAGG 58.008 33.333 13.24 0.00 34.25 3.69
521 522 9.762933 TCAATTTTGGACCTGAAATTTTTAGAG 57.237 29.630 13.24 5.41 34.25 2.43
526 527 9.187996 ACATTTCAATTTTGGACCTGAAATTTT 57.812 25.926 13.33 4.49 42.85 1.82
527 528 8.750515 ACATTTCAATTTTGGACCTGAAATTT 57.249 26.923 13.33 7.21 42.85 1.82
528 529 9.271828 GTACATTTCAATTTTGGACCTGAAATT 57.728 29.630 13.33 12.23 42.85 1.82
529 530 8.428063 TGTACATTTCAATTTTGGACCTGAAAT 58.572 29.630 11.13 11.13 45.05 2.17
530 531 7.786030 TGTACATTTCAATTTTGGACCTGAAA 58.214 30.769 7.96 7.96 40.85 2.69
531 532 7.353414 TGTACATTTCAATTTTGGACCTGAA 57.647 32.000 0.00 0.00 0.00 3.02
532 533 6.968263 TGTACATTTCAATTTTGGACCTGA 57.032 33.333 0.00 0.00 0.00 3.86
533 534 7.871973 TCAATGTACATTTCAATTTTGGACCTG 59.128 33.333 18.50 2.79 0.00 4.00
534 535 7.961351 TCAATGTACATTTCAATTTTGGACCT 58.039 30.769 18.50 0.00 0.00 3.85
535 536 8.087750 TCTCAATGTACATTTCAATTTTGGACC 58.912 33.333 18.50 0.00 0.00 4.46
536 537 9.474920 TTCTCAATGTACATTTCAATTTTGGAC 57.525 29.630 18.50 0.00 0.00 4.02
569 570 9.206690 TGACACTATTTAGATCTGGATTTCTCT 57.793 33.333 5.18 0.00 0.00 3.10
570 571 9.823647 TTGACACTATTTAGATCTGGATTTCTC 57.176 33.333 5.18 0.00 0.00 2.87
576 577 9.494271 GCAATATTGACACTATTTAGATCTGGA 57.506 33.333 19.73 0.00 0.00 3.86
577 578 9.499479 AGCAATATTGACACTATTTAGATCTGG 57.501 33.333 19.73 0.00 0.00 3.86
585 586 9.846248 GAGACAAAAGCAATATTGACACTATTT 57.154 29.630 19.73 7.07 0.00 1.40
586 587 9.236006 AGAGACAAAAGCAATATTGACACTATT 57.764 29.630 19.73 2.22 0.00 1.73
587 588 8.798859 AGAGACAAAAGCAATATTGACACTAT 57.201 30.769 19.73 0.00 0.00 2.12
588 589 8.621532 AAGAGACAAAAGCAATATTGACACTA 57.378 30.769 19.73 0.00 0.00 2.74
589 590 7.446625 AGAAGAGACAAAAGCAATATTGACACT 59.553 33.333 19.73 4.00 0.00 3.55
590 591 7.588512 AGAAGAGACAAAAGCAATATTGACAC 58.411 34.615 19.73 1.56 0.00 3.67
591 592 7.750229 AGAAGAGACAAAAGCAATATTGACA 57.250 32.000 19.73 0.00 0.00 3.58
594 595 9.897744 TGTAAAGAAGAGACAAAAGCAATATTG 57.102 29.630 11.27 11.27 0.00 1.90
595 596 9.899226 GTGTAAAGAAGAGACAAAAGCAATATT 57.101 29.630 0.00 0.00 0.00 1.28
596 597 9.289782 AGTGTAAAGAAGAGACAAAAGCAATAT 57.710 29.630 0.00 0.00 0.00 1.28
597 598 8.677148 AGTGTAAAGAAGAGACAAAAGCAATA 57.323 30.769 0.00 0.00 0.00 1.90
598 599 7.573968 AGTGTAAAGAAGAGACAAAAGCAAT 57.426 32.000 0.00 0.00 0.00 3.56
599 600 8.677148 ATAGTGTAAAGAAGAGACAAAAGCAA 57.323 30.769 0.00 0.00 0.00 3.91
600 601 8.677148 AATAGTGTAAAGAAGAGACAAAAGCA 57.323 30.769 0.00 0.00 0.00 3.91
601 602 8.774586 TGAATAGTGTAAAGAAGAGACAAAAGC 58.225 33.333 0.00 0.00 0.00 3.51
604 605 8.721478 GCATGAATAGTGTAAAGAAGAGACAAA 58.279 33.333 0.00 0.00 0.00 2.83
605 606 8.097038 AGCATGAATAGTGTAAAGAAGAGACAA 58.903 33.333 0.00 0.00 0.00 3.18
606 607 7.547019 CAGCATGAATAGTGTAAAGAAGAGACA 59.453 37.037 0.00 0.00 39.69 3.41
607 608 7.010923 CCAGCATGAATAGTGTAAAGAAGAGAC 59.989 40.741 0.00 0.00 39.69 3.36
608 609 7.044181 CCAGCATGAATAGTGTAAAGAAGAGA 58.956 38.462 0.00 0.00 39.69 3.10
609 610 7.044181 TCCAGCATGAATAGTGTAAAGAAGAG 58.956 38.462 0.00 0.00 39.69 2.85
610 611 6.946340 TCCAGCATGAATAGTGTAAAGAAGA 58.054 36.000 0.00 0.00 39.69 2.87
611 612 7.798596 ATCCAGCATGAATAGTGTAAAGAAG 57.201 36.000 0.00 0.00 39.69 2.85
612 613 8.579850 AAATCCAGCATGAATAGTGTAAAGAA 57.420 30.769 0.00 0.00 39.69 2.52
613 614 7.828717 TGAAATCCAGCATGAATAGTGTAAAGA 59.171 33.333 0.00 0.00 39.69 2.52
614 615 7.912250 GTGAAATCCAGCATGAATAGTGTAAAG 59.088 37.037 0.00 0.00 39.69 1.85
615 616 7.392953 TGTGAAATCCAGCATGAATAGTGTAAA 59.607 33.333 0.00 0.00 39.69 2.01
616 617 6.883756 TGTGAAATCCAGCATGAATAGTGTAA 59.116 34.615 0.00 0.00 39.69 2.41
617 618 6.413892 TGTGAAATCCAGCATGAATAGTGTA 58.586 36.000 0.00 0.00 39.69 2.90
618 619 5.255687 TGTGAAATCCAGCATGAATAGTGT 58.744 37.500 0.00 0.00 39.69 3.55
619 620 5.823209 TGTGAAATCCAGCATGAATAGTG 57.177 39.130 0.00 0.00 39.69 2.74
620 621 7.414222 AAATGTGAAATCCAGCATGAATAGT 57.586 32.000 0.00 0.00 39.69 2.12
621 622 8.600625 CAAAAATGTGAAATCCAGCATGAATAG 58.399 33.333 0.00 0.00 39.69 1.73
622 623 8.095792 ACAAAAATGTGAAATCCAGCATGAATA 58.904 29.630 0.00 0.00 39.69 1.75
623 624 6.938030 ACAAAAATGTGAAATCCAGCATGAAT 59.062 30.769 0.00 0.00 39.69 2.57
624 625 6.289834 ACAAAAATGTGAAATCCAGCATGAA 58.710 32.000 0.00 0.00 39.69 2.57
625 626 5.856156 ACAAAAATGTGAAATCCAGCATGA 58.144 33.333 0.00 0.00 39.69 3.07
626 627 6.548441 AACAAAAATGTGAAATCCAGCATG 57.452 33.333 0.00 0.00 0.00 4.06
627 628 6.993902 AGAAACAAAAATGTGAAATCCAGCAT 59.006 30.769 0.00 0.00 0.00 3.79
628 629 6.347696 AGAAACAAAAATGTGAAATCCAGCA 58.652 32.000 0.00 0.00 0.00 4.41
629 630 6.479660 TGAGAAACAAAAATGTGAAATCCAGC 59.520 34.615 0.00 0.00 0.00 4.85
630 631 8.422973 TTGAGAAACAAAAATGTGAAATCCAG 57.577 30.769 0.00 0.00 35.39 3.86
631 632 7.495279 CCTTGAGAAACAAAAATGTGAAATCCA 59.505 33.333 0.00 0.00 38.08 3.41
632 633 7.495606 ACCTTGAGAAACAAAAATGTGAAATCC 59.504 33.333 0.00 0.00 38.08 3.01
633 634 8.330302 CACCTTGAGAAACAAAAATGTGAAATC 58.670 33.333 0.00 0.00 38.08 2.17
634 635 7.823799 ACACCTTGAGAAACAAAAATGTGAAAT 59.176 29.630 0.00 0.00 38.08 2.17
635 636 7.117523 CACACCTTGAGAAACAAAAATGTGAAA 59.882 33.333 0.00 0.00 42.15 2.69
636 637 6.589523 CACACCTTGAGAAACAAAAATGTGAA 59.410 34.615 0.00 0.00 42.15 3.18
637 638 6.098679 CACACCTTGAGAAACAAAAATGTGA 58.901 36.000 0.00 0.00 42.15 3.58
638 639 5.868801 ACACACCTTGAGAAACAAAAATGTG 59.131 36.000 0.31 0.31 43.46 3.21
639 640 6.036577 ACACACCTTGAGAAACAAAAATGT 57.963 33.333 0.00 0.00 38.08 2.71
640 641 6.966435 AACACACCTTGAGAAACAAAAATG 57.034 33.333 0.00 0.00 38.08 2.32
641 642 6.310224 CGAAACACACCTTGAGAAACAAAAAT 59.690 34.615 0.00 0.00 38.08 1.82
642 643 5.631512 CGAAACACACCTTGAGAAACAAAAA 59.368 36.000 0.00 0.00 38.08 1.94
643 644 5.048643 TCGAAACACACCTTGAGAAACAAAA 60.049 36.000 0.00 0.00 38.08 2.44
644 645 4.456222 TCGAAACACACCTTGAGAAACAAA 59.544 37.500 0.00 0.00 38.08 2.83
645 646 4.004314 TCGAAACACACCTTGAGAAACAA 58.996 39.130 0.00 0.00 36.97 2.83
646 647 3.601435 TCGAAACACACCTTGAGAAACA 58.399 40.909 0.00 0.00 0.00 2.83
647 648 3.621715 ACTCGAAACACACCTTGAGAAAC 59.378 43.478 0.00 0.00 0.00 2.78
648 649 3.869065 ACTCGAAACACACCTTGAGAAA 58.131 40.909 0.00 0.00 0.00 2.52
649 650 3.536956 ACTCGAAACACACCTTGAGAA 57.463 42.857 0.00 0.00 0.00 2.87
650 651 3.536956 AACTCGAAACACACCTTGAGA 57.463 42.857 0.00 0.00 0.00 3.27
651 652 3.242739 CCAAACTCGAAACACACCTTGAG 60.243 47.826 0.00 0.00 0.00 3.02
652 653 2.680841 CCAAACTCGAAACACACCTTGA 59.319 45.455 0.00 0.00 0.00 3.02
653 654 2.680841 TCCAAACTCGAAACACACCTTG 59.319 45.455 0.00 0.00 0.00 3.61
654 655 2.943033 CTCCAAACTCGAAACACACCTT 59.057 45.455 0.00 0.00 0.00 3.50
655 656 2.561569 CTCCAAACTCGAAACACACCT 58.438 47.619 0.00 0.00 0.00 4.00
656 657 1.002792 GCTCCAAACTCGAAACACACC 60.003 52.381 0.00 0.00 0.00 4.16
657 658 1.940613 AGCTCCAAACTCGAAACACAC 59.059 47.619 0.00 0.00 0.00 3.82
658 659 1.939934 CAGCTCCAAACTCGAAACACA 59.060 47.619 0.00 0.00 0.00 3.72
659 660 2.210116 TCAGCTCCAAACTCGAAACAC 58.790 47.619 0.00 0.00 0.00 3.32
660 661 2.613026 TCAGCTCCAAACTCGAAACA 57.387 45.000 0.00 0.00 0.00 2.83
661 662 3.963383 TTTCAGCTCCAAACTCGAAAC 57.037 42.857 0.00 0.00 0.00 2.78
662 663 5.514274 AAATTTCAGCTCCAAACTCGAAA 57.486 34.783 0.00 0.00 0.00 3.46
663 664 5.514274 AAAATTTCAGCTCCAAACTCGAA 57.486 34.783 0.00 0.00 0.00 3.71
664 665 5.514274 AAAAATTTCAGCTCCAAACTCGA 57.486 34.783 0.00 0.00 0.00 4.04
665 666 6.308766 CCATAAAAATTTCAGCTCCAAACTCG 59.691 38.462 0.00 0.00 0.00 4.18
666 667 6.091305 GCCATAAAAATTTCAGCTCCAAACTC 59.909 38.462 0.00 0.00 0.00 3.01
667 668 5.934043 GCCATAAAAATTTCAGCTCCAAACT 59.066 36.000 0.00 0.00 0.00 2.66
668 669 5.934043 AGCCATAAAAATTTCAGCTCCAAAC 59.066 36.000 0.00 0.00 0.00 2.93
669 670 6.112927 AGCCATAAAAATTTCAGCTCCAAA 57.887 33.333 0.00 0.00 0.00 3.28
670 671 5.743636 AGCCATAAAAATTTCAGCTCCAA 57.256 34.783 0.00 0.00 0.00 3.53
671 672 5.743636 AAGCCATAAAAATTTCAGCTCCA 57.256 34.783 0.00 0.00 0.00 3.86
672 673 8.633561 ACTATAAGCCATAAAAATTTCAGCTCC 58.366 33.333 0.00 0.00 0.00 4.70
673 674 9.670719 GACTATAAGCCATAAAAATTTCAGCTC 57.329 33.333 0.00 0.00 0.00 4.09
674 675 9.189156 TGACTATAAGCCATAAAAATTTCAGCT 57.811 29.630 0.00 0.00 0.00 4.24
675 676 9.237846 GTGACTATAAGCCATAAAAATTTCAGC 57.762 33.333 0.00 0.00 0.00 4.26
684 685 9.407380 ACAATGAATGTGACTATAAGCCATAAA 57.593 29.630 0.00 0.00 41.93 1.40
685 686 8.978874 ACAATGAATGTGACTATAAGCCATAA 57.021 30.769 0.00 0.00 41.93 1.90
687 688 8.978874 TTACAATGAATGTGACTATAAGCCAT 57.021 30.769 0.00 0.00 43.77 4.40
688 689 8.673711 GTTTACAATGAATGTGACTATAAGCCA 58.326 33.333 0.00 0.00 43.77 4.75
689 690 8.673711 TGTTTACAATGAATGTGACTATAAGCC 58.326 33.333 0.00 0.00 43.77 4.35
757 758 5.241285 TCCCGGTACTCCAATGTTTAAAAAC 59.759 40.000 0.00 0.00 39.33 2.43
758 759 5.383476 TCCCGGTACTCCAATGTTTAAAAA 58.617 37.500 0.00 0.00 0.00 1.94
759 760 4.983053 TCCCGGTACTCCAATGTTTAAAA 58.017 39.130 0.00 0.00 0.00 1.52
760 761 4.041938 ACTCCCGGTACTCCAATGTTTAAA 59.958 41.667 0.00 0.00 0.00 1.52
761 762 3.583966 ACTCCCGGTACTCCAATGTTTAA 59.416 43.478 0.00 0.00 0.00 1.52
762 763 3.175594 ACTCCCGGTACTCCAATGTTTA 58.824 45.455 0.00 0.00 0.00 2.01
763 764 1.982958 ACTCCCGGTACTCCAATGTTT 59.017 47.619 0.00 0.00 0.00 2.83
764 765 1.652947 ACTCCCGGTACTCCAATGTT 58.347 50.000 0.00 0.00 0.00 2.71
765 766 2.105766 GTACTCCCGGTACTCCAATGT 58.894 52.381 0.00 0.00 45.25 2.71
766 767 2.884894 GTACTCCCGGTACTCCAATG 57.115 55.000 0.00 0.00 45.25 2.82
788 789 0.609131 ATCCGGTGCTCCCAAACTTG 60.609 55.000 0.00 0.00 0.00 3.16
789 790 0.988832 TATCCGGTGCTCCCAAACTT 59.011 50.000 0.00 0.00 0.00 2.66
790 791 0.252197 GTATCCGGTGCTCCCAAACT 59.748 55.000 0.00 0.00 0.00 2.66
791 792 0.252197 AGTATCCGGTGCTCCCAAAC 59.748 55.000 0.00 0.00 0.00 2.93
792 793 0.988832 AAGTATCCGGTGCTCCCAAA 59.011 50.000 0.00 0.00 0.00 3.28
793 794 0.988832 AAAGTATCCGGTGCTCCCAA 59.011 50.000 0.00 0.00 0.00 4.12
794 795 0.539986 GAAAGTATCCGGTGCTCCCA 59.460 55.000 0.00 0.00 0.00 4.37
795 796 0.179054 GGAAAGTATCCGGTGCTCCC 60.179 60.000 0.00 0.22 38.79 4.30
796 797 3.381370 GGAAAGTATCCGGTGCTCC 57.619 57.895 0.00 0.00 38.79 4.70
804 805 3.294214 TGACTACTCCCGGAAAGTATCC 58.706 50.000 0.73 6.01 45.57 2.59
805 806 3.243468 GCTGACTACTCCCGGAAAGTATC 60.243 52.174 0.73 10.29 0.00 2.24
806 807 2.694109 GCTGACTACTCCCGGAAAGTAT 59.306 50.000 0.73 1.26 0.00 2.12
807 808 2.097825 GCTGACTACTCCCGGAAAGTA 58.902 52.381 0.73 9.81 0.00 2.24
808 809 0.896226 GCTGACTACTCCCGGAAAGT 59.104 55.000 0.73 9.05 0.00 2.66
809 810 1.187087 AGCTGACTACTCCCGGAAAG 58.813 55.000 0.73 1.91 0.00 2.62
810 811 2.376109 CTAGCTGACTACTCCCGGAAA 58.624 52.381 0.73 0.00 0.00 3.13
811 812 2.022754 GCTAGCTGACTACTCCCGGAA 61.023 57.143 7.70 0.00 0.00 4.30
812 813 0.465824 GCTAGCTGACTACTCCCGGA 60.466 60.000 7.70 0.00 0.00 5.14
813 814 1.787057 CGCTAGCTGACTACTCCCGG 61.787 65.000 13.93 0.00 0.00 5.73
814 815 0.814410 TCGCTAGCTGACTACTCCCG 60.814 60.000 13.93 0.00 0.00 5.14
815 816 0.948678 CTCGCTAGCTGACTACTCCC 59.051 60.000 13.93 0.00 0.00 4.30
816 817 0.309612 GCTCGCTAGCTGACTACTCC 59.690 60.000 13.93 0.00 45.85 3.85
817 818 3.837669 GCTCGCTAGCTGACTACTC 57.162 57.895 13.93 0.00 45.85 2.59
840 841 0.752009 TCGCTCTCTGGGTTCGCTAT 60.752 55.000 0.00 0.00 0.00 2.97
860 862 2.048316 CGGCCCAAAAATTGCGCT 60.048 55.556 9.73 0.00 34.93 5.92
900 902 3.795688 TCCCATCTTTTGTCTGAAGCT 57.204 42.857 0.00 0.00 0.00 3.74
909 911 4.777366 AGGGTTAAACCATCCCATCTTTTG 59.223 41.667 13.24 0.00 41.02 2.44
919 922 5.369993 AGGAGGAAGATAGGGTTAAACCATC 59.630 44.000 13.24 12.34 41.02 3.51
951 954 4.284550 TGTGGGGGTTGCTCCAGC 62.285 66.667 0.00 0.00 42.50 4.85
952 955 2.282462 GTGTGGGGGTTGCTCCAG 60.282 66.667 0.00 0.00 38.11 3.86
988 991 0.811219 CGCGCCATTGATGAGAGGAA 60.811 55.000 0.00 0.00 0.00 3.36
1057 1066 0.684805 GAGAAAGGGAGCGGAGGAGA 60.685 60.000 0.00 0.00 0.00 3.71
1060 1069 1.519719 CTGAGAAAGGGAGCGGAGG 59.480 63.158 0.00 0.00 0.00 4.30
1067 1076 4.760047 GGCGCGCTGAGAAAGGGA 62.760 66.667 32.29 0.00 41.34 4.20
1122 1134 2.042762 CCATGGGGGTGAGGAGGA 59.957 66.667 2.85 0.00 0.00 3.71
1239 1251 2.120718 AACCTGGCTCTCCTCCGT 59.879 61.111 0.00 0.00 0.00 4.69
1281 1293 1.332997 GCTTCTTCGATGCCAATCTGG 59.667 52.381 0.00 0.00 41.55 3.86
1305 1317 3.171388 ATGAGGGGGTCATCGGGC 61.171 66.667 0.00 0.00 42.80 6.13
1311 1323 1.616327 CACCAGGATGAGGGGGTCA 60.616 63.158 0.00 0.00 39.69 4.02
1349 1361 1.947456 ACAAGTCCAAGGAGCGAAAAC 59.053 47.619 0.00 0.00 0.00 2.43
1386 1398 5.645929 TGCAAAGCCATTCGTAATTAGAGAA 59.354 36.000 5.96 5.96 0.00 2.87
1547 1559 0.448990 TCATCATCGCAAAGCAGCAC 59.551 50.000 0.00 0.00 0.00 4.40
1558 1570 6.426025 TCAGCTTCCTGATAAAATCATCATCG 59.574 38.462 0.00 0.00 42.98 3.84
1590 1602 0.250081 GCGGTCTTCATCCCTCCATC 60.250 60.000 0.00 0.00 0.00 3.51
1724 1756 3.119531 TGTTGAACCAGAAGCAACAAGTG 60.120 43.478 0.00 0.00 46.07 3.16
1736 1776 1.027357 AGTTGCAGCTGTTGAACCAG 58.973 50.000 16.64 0.00 35.49 4.00
1850 1891 6.014584 TGTGGTGCTAGAAATAAGTCAGAGAA 60.015 38.462 0.00 0.00 0.00 2.87
1943 1986 2.074547 TTGCTACTGCTACGGTCAAC 57.925 50.000 0.00 0.00 40.48 3.18
1961 2004 6.350445 GCTCAAAACCACCATTATCAGACATT 60.350 38.462 0.00 0.00 0.00 2.71
1993 2036 6.128391 TGCTATTGTGACCGTTCAAACTTATC 60.128 38.462 0.00 0.00 31.90 1.75
1996 2039 3.880490 TGCTATTGTGACCGTTCAAACTT 59.120 39.130 0.00 0.00 31.90 2.66
2076 2120 6.877322 ACTATTACCTGGTGTGTTGTCAATAC 59.123 38.462 10.23 5.56 0.00 1.89
2114 2158 4.362476 GGGGCTGCAAACCAAGCG 62.362 66.667 0.50 0.00 33.85 4.68
2237 2293 1.139654 TGCCAACTAGCTCATAGCCAG 59.860 52.381 0.00 0.00 43.77 4.85
2337 2394 0.680618 CCCAATTGCTCAAGCCAACA 59.319 50.000 0.00 0.00 41.18 3.33
2364 2421 2.678934 ACCTAGGGCGTGCTTCGA 60.679 61.111 14.81 0.00 42.86 3.71
2508 2567 6.595716 ACACCAGAAGTAGCATTGAAGTAATC 59.404 38.462 0.00 0.00 0.00 1.75
2724 2787 5.760131 AGTCCTTTTCCTATCCATTCAAGG 58.240 41.667 0.00 0.00 0.00 3.61
2818 2881 2.028203 ACAACAATAATGTGCAAGGGGC 60.028 45.455 0.00 0.00 40.46 5.80
2819 2882 3.587923 CACAACAATAATGTGCAAGGGG 58.412 45.455 0.00 0.00 41.42 4.79
3113 3207 7.209475 CCTCTCTCAAAGATTCTATTGACTCC 58.791 42.308 7.00 0.00 32.19 3.85
3373 3476 7.124298 ACATAGAAGCACTAACATCCTACTGAA 59.876 37.037 0.00 0.00 34.56 3.02
3374 3477 6.607600 ACATAGAAGCACTAACATCCTACTGA 59.392 38.462 0.00 0.00 34.56 3.41
3472 3576 4.136796 TCACAAATAGTCAGCTGCAACTT 58.863 39.130 12.80 0.13 0.00 2.66
3746 3980 1.199624 GCCAAAAGAACACTTGCACG 58.800 50.000 0.00 0.00 0.00 5.34
3844 4080 5.022787 TGCAATCTAAAATTAGGGTGCCTT 58.977 37.500 18.17 0.00 38.78 4.35
4245 5095 2.497770 GCGCTACGGAAAGGCCTA 59.502 61.111 5.16 0.00 0.00 3.93
4397 5247 1.593787 CCAGAGACGATGTGGCACT 59.406 57.895 19.83 4.13 35.17 4.40
4996 5854 6.992063 AATCAGCTGACATACTGTAAAAGG 57.008 37.500 20.97 0.00 35.37 3.11
4997 5855 8.709386 AGTAATCAGCTGACATACTGTAAAAG 57.291 34.615 29.56 0.00 35.37 2.27
4998 5856 9.502091 AAAGTAATCAGCTGACATACTGTAAAA 57.498 29.630 30.26 5.31 33.19 1.52
4999 5857 9.151471 GAAAGTAATCAGCTGACATACTGTAAA 57.849 33.333 30.26 5.49 33.19 2.01
5000 5858 8.531982 AGAAAGTAATCAGCTGACATACTGTAA 58.468 33.333 30.26 5.95 33.19 2.41
5001 5859 7.976175 CAGAAAGTAATCAGCTGACATACTGTA 59.024 37.037 30.26 11.07 33.19 2.74
5002 5860 6.815641 CAGAAAGTAATCAGCTGACATACTGT 59.184 38.462 30.26 27.36 33.19 3.55
5003 5861 6.238049 GCAGAAAGTAATCAGCTGACATACTG 60.238 42.308 30.26 24.82 33.19 2.74
5457 6880 8.548877 ACTGCTTAATATAGTTGGAAAGGAAGA 58.451 33.333 0.00 0.00 0.00 2.87
5732 7155 0.035820 TGTTAGTCCCGACCAATGCC 60.036 55.000 0.00 0.00 0.00 4.40
5776 7199 3.090790 TCTCAATTGCATTTGGCTGCTA 58.909 40.909 18.52 0.00 45.15 3.49
5809 7232 1.963515 ACCACCACCTTTTGAAGCATC 59.036 47.619 0.00 0.00 0.00 3.91
5892 7315 6.534793 ACAAAAGGAACAGTAAAAATGCAGTG 59.465 34.615 0.00 0.00 0.00 3.66
6205 7736 7.012894 CAGACCACAATACCTTGTCTTTTGTAA 59.987 37.037 0.00 0.00 43.76 2.41
6461 7997 3.058846 GCTCGTCTGGTTTTCTTTTCTCC 60.059 47.826 0.00 0.00 0.00 3.71
6567 8107 1.526464 GGCCACAACATTCGCAAAAAG 59.474 47.619 0.00 0.00 0.00 2.27
6650 8190 3.876914 TGTTCCTGAAAGCAACTGTACAG 59.123 43.478 21.44 21.44 0.00 2.74
6715 8255 8.300286 CACCATCTATTCTCTTATACACACGAT 58.700 37.037 0.00 0.00 0.00 3.73
6742 8289 1.136828 GCCCATGATGGTAGGTGGTA 58.863 55.000 11.09 0.00 35.17 3.25
6743 8290 0.918799 TGCCCATGATGGTAGGTGGT 60.919 55.000 11.09 0.00 35.17 4.16
6744 8291 0.258484 TTGCCCATGATGGTAGGTGG 59.742 55.000 11.09 0.00 35.17 4.61
6745 8292 1.064463 ACTTGCCCATGATGGTAGGTG 60.064 52.381 11.09 0.00 35.17 4.00
6746 8293 1.298953 ACTTGCCCATGATGGTAGGT 58.701 50.000 11.09 2.96 35.17 3.08
6747 8294 2.442236 AACTTGCCCATGATGGTAGG 57.558 50.000 11.09 2.31 35.17 3.18
6748 8295 4.704540 TGTTAAACTTGCCCATGATGGTAG 59.295 41.667 11.09 7.26 35.17 3.18
7056 9037 0.106519 AGCAGCACCAACCTCTTGTT 60.107 50.000 0.00 0.00 37.80 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.