Multiple sequence alignment - TraesCS2B01G520600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G520600 chr2B 100.000 9389 0 0 1 9389 715318865 715309477 0.000000e+00 17339.0
1 TraesCS2B01G520600 chr2A 95.270 4757 151 40 603 5328 724740334 724735621 0.000000e+00 7470.0
2 TraesCS2B01G520600 chr2A 94.884 1857 64 13 5316 7161 724735597 724733761 0.000000e+00 2874.0
3 TraesCS2B01G520600 chr2A 92.166 1468 73 19 7370 8797 724733557 724732092 0.000000e+00 2036.0
4 TraesCS2B01G520600 chr2A 84.834 633 40 34 8794 9389 724732043 724731430 3.780000e-163 586.0
5 TraesCS2B01G520600 chr2A 94.175 103 3 2 7165 7265 323015558 323015659 4.540000e-33 154.0
6 TraesCS2B01G520600 chr2D 96.741 1841 39 12 3301 5127 590336870 590335037 0.000000e+00 3048.0
7 TraesCS2B01G520600 chr2D 95.364 1855 50 13 5316 7161 590334719 590332892 0.000000e+00 2916.0
8 TraesCS2B01G520600 chr2D 94.361 1667 54 23 1549 3198 590338524 590336881 0.000000e+00 2521.0
9 TraesCS2B01G520600 chr2D 94.449 1333 62 3 7252 8572 590332889 590331557 0.000000e+00 2041.0
10 TraesCS2B01G520600 chr2D 91.667 600 20 6 603 1188 590339716 590339133 0.000000e+00 804.0
11 TraesCS2B01G520600 chr2D 87.231 603 40 21 8803 9389 590331227 590330646 0.000000e+00 652.0
12 TraesCS2B01G520600 chr2D 84.680 359 45 7 48 406 231594390 231594738 5.400000e-92 350.0
13 TraesCS2B01G520600 chr2D 97.073 205 4 2 5124 5328 590334945 590334743 2.510000e-90 344.0
14 TraesCS2B01G520600 chr2D 94.118 102 6 0 7163 7264 113490495 113490394 1.260000e-33 156.0
15 TraesCS2B01G520600 chr2D 89.623 106 6 3 8693 8797 590331411 590331310 7.650000e-26 130.0
16 TraesCS2B01G520600 chr2D 97.143 35 1 0 8584 8618 590331512 590331478 1.020000e-04 60.2
17 TraesCS2B01G520600 chr3A 92.857 574 38 2 1 572 101641964 101642536 0.000000e+00 830.0
18 TraesCS2B01G520600 chr3A 91.003 578 49 3 1 578 658946691 658946117 0.000000e+00 776.0
19 TraesCS2B01G520600 chr1B 91.549 568 46 2 1 567 427949578 427950144 0.000000e+00 782.0
20 TraesCS2B01G520600 chr1B 74.952 523 104 12 5158 5662 90436312 90435799 2.050000e-51 215.0
21 TraesCS2B01G520600 chr1A 75.414 846 139 48 5158 5951 53853254 53854082 6.980000e-91 346.0
22 TraesCS2B01G520600 chr1A 74.831 445 84 17 5108 5529 53868756 53869195 9.690000e-40 176.0
23 TraesCS2B01G520600 chr1A 81.166 223 37 5 2505 2724 53850596 53850816 3.490000e-39 174.0
24 TraesCS2B01G520600 chrUn 74.886 880 146 47 5129 5951 3700430 3699569 1.950000e-86 331.0
25 TraesCS2B01G520600 chrUn 75.131 571 113 24 2477 3035 3832505 3831952 3.390000e-59 241.0
26 TraesCS2B01G520600 chrUn 97.849 93 2 0 7158 7250 25040942 25041034 2.710000e-35 161.0
27 TraesCS2B01G520600 chrUn 96.842 95 2 1 7160 7254 279936211 279936304 3.510000e-34 158.0
28 TraesCS2B01G520600 chrUn 96.842 95 2 1 7160 7254 395541598 395541691 3.510000e-34 158.0
29 TraesCS2B01G520600 chr1D 75.181 830 141 39 5108 5889 54907812 54908624 1.950000e-86 331.0
30 TraesCS2B01G520600 chr6B 97.872 94 2 0 7165 7258 286726680 286726587 7.540000e-36 163.0
31 TraesCS2B01G520600 chr6A 97.826 92 1 1 7164 7255 127215401 127215311 3.510000e-34 158.0
32 TraesCS2B01G520600 chr6A 86.747 83 8 2 3576 3658 592694161 592694082 1.300000e-13 89.8
33 TraesCS2B01G520600 chr6A 81.553 103 16 3 410 511 573180958 573180858 2.170000e-11 82.4
34 TraesCS2B01G520600 chr4A 95.876 97 3 1 7155 7251 605716319 605716414 1.260000e-33 156.0
35 TraesCS2B01G520600 chr7D 94.175 103 3 3 7165 7266 234804178 234804078 4.540000e-33 154.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G520600 chr2B 715309477 715318865 9388 True 17339.000000 17339 100.000000 1 9389 1 chr2B.!!$R1 9388
1 TraesCS2B01G520600 chr2A 724731430 724740334 8904 True 3241.500000 7470 91.788500 603 9389 4 chr2A.!!$R1 8786
2 TraesCS2B01G520600 chr2D 590330646 590339716 9070 True 1390.688889 3048 93.739111 603 9389 9 chr2D.!!$R2 8786
3 TraesCS2B01G520600 chr3A 101641964 101642536 572 False 830.000000 830 92.857000 1 572 1 chr3A.!!$F1 571
4 TraesCS2B01G520600 chr3A 658946117 658946691 574 True 776.000000 776 91.003000 1 578 1 chr3A.!!$R1 577
5 TraesCS2B01G520600 chr1B 427949578 427950144 566 False 782.000000 782 91.549000 1 567 1 chr1B.!!$F1 566
6 TraesCS2B01G520600 chr1B 90435799 90436312 513 True 215.000000 215 74.952000 5158 5662 1 chr1B.!!$R1 504
7 TraesCS2B01G520600 chr1A 53850596 53854082 3486 False 260.000000 346 78.290000 2505 5951 2 chr1A.!!$F2 3446
8 TraesCS2B01G520600 chrUn 3699569 3700430 861 True 331.000000 331 74.886000 5129 5951 1 chrUn.!!$R1 822
9 TraesCS2B01G520600 chrUn 3831952 3832505 553 True 241.000000 241 75.131000 2477 3035 1 chrUn.!!$R2 558
10 TraesCS2B01G520600 chr1D 54907812 54908624 812 False 331.000000 331 75.181000 5108 5889 1 chr1D.!!$F1 781

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
827 830 0.395586 AGCCTCACACCACAAGCAAA 60.396 50.000 0.00 0.00 0.00 3.68 F
1730 2005 0.458543 CGTCATCAGCTAACGGCAGT 60.459 55.000 0.00 0.00 44.79 4.40 F
2130 2426 0.766674 TAAGTGCCACAGGGAGGTGT 60.767 55.000 0.00 0.00 37.06 4.16 F
2979 3283 1.460359 CGCATTTGGCCACAACAAATC 59.540 47.619 3.88 0.00 44.29 2.17 F
3662 4235 1.210967 TGAGGTTTATTGCTACCCCGG 59.789 52.381 0.00 0.00 34.90 5.73 F
3928 4501 1.910671 ACACTAATCCCCGCACCTTTA 59.089 47.619 0.00 0.00 0.00 1.85 F
4904 5549 5.894298 TCTGAAGTATGGAAGCCATGTAT 57.106 39.130 9.14 0.00 44.84 2.29 F
6374 7333 1.679559 GGCTGAACCATTGGGCATCC 61.680 60.000 7.78 6.33 38.86 3.51 F
6768 7727 0.897621 CATGGGTTCTTTGCCCCTTC 59.102 55.000 0.00 0.00 45.49 3.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1885 2170 0.323725 AGCAAATTCAGGCCGGTGAT 60.324 50.000 1.90 0.00 0.00 3.06 R
2979 3283 1.376466 CCTGTCCCCAACTGTCCAG 59.624 63.158 0.00 0.00 0.00 3.86 R
3564 4137 3.567164 AGCACAGAAGAATGAAACACTGG 59.433 43.478 0.00 0.00 0.00 4.00 R
4646 5290 2.244695 TGAGGAACAGTATCGGTGTGT 58.755 47.619 0.00 0.00 0.00 3.72 R
4800 5444 5.067544 TGAATGCTCAAAACATCAAGTGACA 59.932 36.000 0.00 0.00 0.00 3.58 R
5097 5750 5.185635 ACATAATCAACACAATCTGGTTGGG 59.814 40.000 0.33 0.33 46.96 4.12 R
6396 7355 0.321671 GGCTGCCTTTCTTTTTCCCC 59.678 55.000 12.43 0.00 0.00 4.81 R
7236 8206 0.108281 GCAAGGTACTCCCTCCGTTC 60.108 60.000 0.00 0.00 45.47 3.95 R
8516 9586 0.105964 CACCGCGGGATTCCATTAGA 59.894 55.000 31.76 0.00 0.00 2.10 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 2.174349 GAACTTTGCAGCGGCTCG 59.826 61.111 10.92 0.75 41.91 5.03
36 37 1.669440 GGCTCGGAGTGTGGTACAA 59.331 57.895 6.90 0.00 44.16 2.41
157 158 4.788075 TGATTCAGAATTACAAGGGGGAGA 59.212 41.667 0.00 0.00 0.00 3.71
208 209 3.245518 ACGTGTATGATGCTAGCACAA 57.754 42.857 22.07 11.88 0.00 3.33
254 255 5.302823 AGGGCCTGATATTGCTTGAAAATAC 59.697 40.000 4.50 0.00 0.00 1.89
277 278 2.309613 GCTGCAATGGGGTTATCATGA 58.690 47.619 0.00 0.00 0.00 3.07
288 289 4.752101 GGGGTTATCATGAAGTCTGATTCG 59.248 45.833 0.00 0.00 35.12 3.34
315 316 1.176527 TAATCCAAGCTTGCACTGGC 58.823 50.000 21.43 0.00 41.68 4.85
349 350 1.686325 AAGCCCAGCCACGACGATAT 61.686 55.000 0.00 0.00 0.00 1.63
356 357 1.006832 GCCACGACGATATTTGCAGT 58.993 50.000 0.00 0.00 0.00 4.40
367 370 5.009610 ACGATATTTGCAGTTTGTTTCCAGT 59.990 36.000 0.00 0.00 0.00 4.00
379 382 3.554934 TGTTTCCAGTGAGCAACAAGAT 58.445 40.909 0.00 0.00 0.00 2.40
388 391 5.700832 CAGTGAGCAACAAGATTAGGTACAA 59.299 40.000 0.00 0.00 0.00 2.41
399 402 7.665559 ACAAGATTAGGTACAATGAGCTTTCAA 59.334 33.333 0.00 0.00 0.00 2.69
406 409 4.989279 ACAATGAGCTTTCAACACTGTT 57.011 36.364 0.00 0.00 0.00 3.16
417 420 1.000955 CAACACTGTTCTAGGGACGCT 59.999 52.381 0.00 0.00 32.67 5.07
454 457 4.957759 AATTTAGCGAGGCACGTTTATT 57.042 36.364 6.15 1.43 44.60 1.40
506 509 6.158695 TGGTGATCCTCCTAGCTTTATTCTTT 59.841 38.462 0.00 0.00 34.23 2.52
511 514 7.682787 TCCTCCTAGCTTTATTCTTTCAGAT 57.317 36.000 0.00 0.00 0.00 2.90
676 679 3.414136 AACGGCCCACAAGTCAGCA 62.414 57.895 0.00 0.00 0.00 4.41
684 687 0.800631 CACAAGTCAGCATCGCATGT 59.199 50.000 0.00 0.00 0.00 3.21
750 753 4.503643 CCAAAAACACAAATGCTCTCCCAT 60.504 41.667 0.00 0.00 0.00 4.00
775 778 0.887387 ACGACCAAACCCAATGACCG 60.887 55.000 0.00 0.00 0.00 4.79
827 830 0.395586 AGCCTCACACCACAAGCAAA 60.396 50.000 0.00 0.00 0.00 3.68
840 843 0.593773 AAGCAAACGCGCACGAAAAT 60.594 45.000 5.73 0.00 43.93 1.82
852 855 2.282820 GCACGAAAATCTCCACGATCTC 59.717 50.000 0.00 0.00 0.00 2.75
863 866 0.669077 CACGATCTCCTCTAACCGGG 59.331 60.000 6.32 0.00 0.00 5.73
1301 1323 3.254035 TTCGCCCCTTCCTCCCTCT 62.254 63.158 0.00 0.00 0.00 3.69
1306 1331 1.074850 CCCTTCCTCCCTCTCCTCC 60.075 68.421 0.00 0.00 0.00 4.30
1343 1368 1.945207 CGATTCCGTGGTTTGTTTCG 58.055 50.000 0.00 0.00 0.00 3.46
1344 1369 1.399215 CGATTCCGTGGTTTGTTTCGG 60.399 52.381 0.00 0.00 43.65 4.30
1445 1689 4.262592 GGGAAGTAGTTACCACGAAAGGAA 60.263 45.833 6.69 0.00 36.51 3.36
1446 1690 4.928020 GGAAGTAGTTACCACGAAAGGAAG 59.072 45.833 0.00 0.00 0.00 3.46
1525 1769 1.414550 GGGTGCTCTGGAGGAGATTAC 59.585 57.143 0.00 0.00 44.45 1.89
1612 1887 4.129380 CCCTGTACCATGATGTGTGTATG 58.871 47.826 0.00 0.00 0.00 2.39
1642 1917 3.190874 GACATTTTCAGCTAGGAGTCCG 58.809 50.000 2.76 0.00 0.00 4.79
1659 1934 2.380410 CGCTACAGCACGACCAACC 61.380 63.158 1.61 0.00 42.21 3.77
1703 1978 1.576421 GGCAGGCTTTTCAGTGTCG 59.424 57.895 0.00 0.00 0.00 4.35
1720 1995 0.875908 TCGGCTATTGCGTCATCAGC 60.876 55.000 0.00 0.00 40.82 4.26
1730 2005 0.458543 CGTCATCAGCTAACGGCAGT 60.459 55.000 0.00 0.00 44.79 4.40
1738 2013 1.999051 CTAACGGCAGTGTGCGATC 59.001 57.895 0.00 0.00 46.21 3.69
1768 2043 2.549754 CAAGATCAAACAGCGTGGAACT 59.450 45.455 0.00 0.00 31.75 3.01
1870 2155 5.587844 GTGATCTTAGACATGCCTGAATTGT 59.412 40.000 0.00 0.00 0.00 2.71
1882 2167 2.478370 CCTGAATTGTATGTTGCAGCGG 60.478 50.000 0.00 0.00 0.00 5.52
1885 2170 3.254411 TGAATTGTATGTTGCAGCGGAAA 59.746 39.130 0.00 0.00 0.00 3.13
1978 2266 2.202743 TGCTATCTGCCACGCGTC 60.203 61.111 9.86 0.00 42.00 5.19
1980 2268 2.102357 CTATCTGCCACGCGTCGT 59.898 61.111 9.86 0.00 42.36 4.34
1981 2269 1.516386 CTATCTGCCACGCGTCGTT 60.516 57.895 9.86 0.00 38.32 3.85
1982 2270 1.472276 CTATCTGCCACGCGTCGTTC 61.472 60.000 9.86 0.00 38.32 3.95
1983 2271 2.877360 TATCTGCCACGCGTCGTTCC 62.877 60.000 9.86 0.00 38.32 3.62
2007 2295 1.751927 CCCTGATTCCACAGCCTGC 60.752 63.158 0.00 0.00 36.67 4.85
2130 2426 0.766674 TAAGTGCCACAGGGAGGTGT 60.767 55.000 0.00 0.00 37.06 4.16
2163 2459 4.853924 AACTGCAGAAGGGTACAAAATG 57.146 40.909 23.35 0.00 0.00 2.32
2240 2536 3.863400 GCAATCTTGTCAGGCAAAGCAAT 60.863 43.478 0.00 0.00 36.53 3.56
2267 2563 3.872696 TGTCGTGATATCAAACAGCCAT 58.127 40.909 7.07 0.00 0.00 4.40
2611 2912 9.740239 CTCCATAGTTGATTTTATTTGATGTGG 57.260 33.333 0.00 0.00 0.00 4.17
2675 2977 4.099573 ACATGGGGATACTCTTCAACGTAG 59.900 45.833 0.00 0.00 38.64 3.51
2979 3283 1.460359 CGCATTTGGCCACAACAAATC 59.540 47.619 3.88 0.00 44.29 2.17
3564 4137 9.382244 GTGAGTGATGTTTGTCAGTTTTATAAC 57.618 33.333 0.00 0.00 32.08 1.89
3662 4235 1.210967 TGAGGTTTATTGCTACCCCGG 59.789 52.381 0.00 0.00 34.90 5.73
3928 4501 1.910671 ACACTAATCCCCGCACCTTTA 59.089 47.619 0.00 0.00 0.00 1.85
4069 4643 7.717436 TGTCTAACATATGTTGTTCCAAGTTCA 59.283 33.333 27.62 16.16 45.55 3.18
4646 5290 6.214819 AGTTTGTAATGGAACCTAGCCTTCTA 59.785 38.462 0.00 0.00 0.00 2.10
4800 5444 6.210185 AGCAAGGCTATTCATGAAGTTTTCTT 59.790 34.615 14.54 10.29 39.09 2.52
4897 5542 8.730680 TCAAGTAATTTTCTGAAGTATGGAAGC 58.269 33.333 0.00 0.00 0.00 3.86
4904 5549 5.894298 TCTGAAGTATGGAAGCCATGTAT 57.106 39.130 9.14 0.00 44.84 2.29
5525 6447 9.005777 TGGGACAGAAGTATGTGTATTTAAAAC 57.994 33.333 0.00 0.00 32.34 2.43
5552 6474 9.261180 GCTGATGTTACATGAAATAGTAGCTAA 57.739 33.333 1.24 0.00 0.00 3.09
5653 6595 4.393062 AGTCTTGAAGGAATGCATGTTACG 59.607 41.667 0.00 0.00 0.00 3.18
5995 6954 9.905713 AGCATAGTTTTCATATCTAAAACCTCA 57.094 29.630 14.87 5.99 44.29 3.86
6077 7036 2.351738 GCATTTCTTTTAGGCGTGCAGT 60.352 45.455 0.00 0.00 0.00 4.40
6104 7063 6.199908 CCTTAGTTGAGCTCTGTTCGATAATG 59.800 42.308 16.19 0.00 0.00 1.90
6158 7117 9.574458 CATATTAGTAATAGATCCAGGTGAACG 57.426 37.037 8.52 0.00 0.00 3.95
6162 7121 2.225382 TAGATCCAGGTGAACGGTCA 57.775 50.000 0.00 0.00 0.00 4.02
6232 7191 4.565962 TGAAACAAATTGTGTCACACATGC 59.434 37.500 14.51 0.00 44.16 4.06
6233 7192 4.389890 AACAAATTGTGTCACACATGCT 57.610 36.364 12.49 0.00 44.16 3.79
6236 7195 3.909776 AATTGTGTCACACATGCTGAG 57.090 42.857 12.49 0.00 44.16 3.35
6251 7210 5.595542 ACATGCTGAGCCATTAACATAACAT 59.404 36.000 0.23 0.00 0.00 2.71
6334 7293 1.990327 GGGTTCCCTCCTTTAGTTCCA 59.010 52.381 0.00 0.00 0.00 3.53
6374 7333 1.679559 GGCTGAACCATTGGGCATCC 61.680 60.000 7.78 6.33 38.86 3.51
6396 7355 1.454653 CATGCACGCGTGATCAGATAG 59.545 52.381 41.19 17.32 35.09 2.08
6499 7458 2.821366 GCACCACGGCCAGATCTG 60.821 66.667 16.24 16.24 0.00 2.90
6591 7550 2.198827 AAGTTCAATGGCGATGGTGA 57.801 45.000 0.00 0.00 0.00 4.02
6627 7586 5.665812 AGGCTAATTGTGAGGTGTATTAGGA 59.334 40.000 0.00 0.00 33.33 2.94
6630 7589 5.435686 AATTGTGAGGTGTATTAGGAGCA 57.564 39.130 0.00 0.00 0.00 4.26
6637 7596 3.452627 AGGTGTATTAGGAGCAAGACCAG 59.547 47.826 0.00 0.00 0.00 4.00
6642 7601 4.640771 ATTAGGAGCAAGACCAGAAACA 57.359 40.909 0.00 0.00 0.00 2.83
6658 7617 5.048713 CCAGAAACAACCACATTACTTCTCC 60.049 44.000 0.00 0.00 0.00 3.71
6755 7714 4.324563 CCTCCATACTTGTTCTTCATGGGT 60.325 45.833 0.00 0.00 37.37 4.51
6768 7727 0.897621 CATGGGTTCTTTGCCCCTTC 59.102 55.000 0.00 0.00 45.49 3.46
6770 7729 1.451449 TGGGTTCTTTGCCCCTTCTA 58.549 50.000 0.00 0.00 45.49 2.10
6779 7738 4.289672 TCTTTGCCCCTTCTATCTGTTTCT 59.710 41.667 0.00 0.00 0.00 2.52
6780 7739 4.657814 TTGCCCCTTCTATCTGTTTCTT 57.342 40.909 0.00 0.00 0.00 2.52
6781 7740 3.955471 TGCCCCTTCTATCTGTTTCTTG 58.045 45.455 0.00 0.00 0.00 3.02
6782 7741 3.330701 TGCCCCTTCTATCTGTTTCTTGT 59.669 43.478 0.00 0.00 0.00 3.16
6783 7742 4.534500 TGCCCCTTCTATCTGTTTCTTGTA 59.466 41.667 0.00 0.00 0.00 2.41
6784 7743 5.119694 GCCCCTTCTATCTGTTTCTTGTAG 58.880 45.833 0.00 0.00 0.00 2.74
6877 7846 7.878127 ACCCAGCTAATATATGTGTACATGTTC 59.122 37.037 2.30 0.00 37.15 3.18
6978 7947 8.812147 AATGACATCATTGAACATATGCAATC 57.188 30.769 6.31 0.00 44.22 2.67
7030 7999 6.038161 GCAAAAGCTAATCCTGGTTTGTTTTT 59.962 34.615 0.21 6.34 35.65 1.94
7173 8143 6.738832 GAGTAAATGTTTGTTACTCCCTCC 57.261 41.667 11.55 0.00 46.23 4.30
7174 8144 5.243207 AGTAAATGTTTGTTACTCCCTCCG 58.757 41.667 0.00 0.00 37.23 4.63
7175 8145 3.782656 AATGTTTGTTACTCCCTCCGT 57.217 42.857 0.00 0.00 0.00 4.69
7176 8146 3.782656 ATGTTTGTTACTCCCTCCGTT 57.217 42.857 0.00 0.00 0.00 4.44
7177 8147 3.116079 TGTTTGTTACTCCCTCCGTTC 57.884 47.619 0.00 0.00 0.00 3.95
7178 8148 2.224354 TGTTTGTTACTCCCTCCGTTCC 60.224 50.000 0.00 0.00 0.00 3.62
7179 8149 1.719529 TTGTTACTCCCTCCGTTCCA 58.280 50.000 0.00 0.00 0.00 3.53
7180 8150 1.719529 TGTTACTCCCTCCGTTCCAA 58.280 50.000 0.00 0.00 0.00 3.53
7181 8151 2.048601 TGTTACTCCCTCCGTTCCAAA 58.951 47.619 0.00 0.00 0.00 3.28
7182 8152 2.438763 TGTTACTCCCTCCGTTCCAAAA 59.561 45.455 0.00 0.00 0.00 2.44
7183 8153 3.073356 TGTTACTCCCTCCGTTCCAAAAT 59.927 43.478 0.00 0.00 0.00 1.82
7184 8154 4.286549 TGTTACTCCCTCCGTTCCAAAATA 59.713 41.667 0.00 0.00 0.00 1.40
7185 8155 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
7186 8156 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
7187 8157 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
7188 8158 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
7189 8159 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
7190 8160 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
7191 8161 4.384208 CCCTCCGTTCCAAAATAGATGACT 60.384 45.833 0.00 0.00 0.00 3.41
7192 8162 4.811557 CCTCCGTTCCAAAATAGATGACTC 59.188 45.833 0.00 0.00 0.00 3.36
7193 8163 5.414789 TCCGTTCCAAAATAGATGACTCA 57.585 39.130 0.00 0.00 0.00 3.41
7194 8164 5.800296 TCCGTTCCAAAATAGATGACTCAA 58.200 37.500 0.00 0.00 0.00 3.02
7195 8165 5.642063 TCCGTTCCAAAATAGATGACTCAAC 59.358 40.000 0.00 0.00 0.00 3.18
7196 8166 5.643777 CCGTTCCAAAATAGATGACTCAACT 59.356 40.000 0.00 0.00 0.00 3.16
7197 8167 6.149474 CCGTTCCAAAATAGATGACTCAACTT 59.851 38.462 0.00 0.00 0.00 2.66
7198 8168 7.308589 CCGTTCCAAAATAGATGACTCAACTTT 60.309 37.037 0.00 0.00 0.00 2.66
7199 8169 7.535258 CGTTCCAAAATAGATGACTCAACTTTG 59.465 37.037 0.00 0.00 0.00 2.77
7200 8170 8.352942 GTTCCAAAATAGATGACTCAACTTTGT 58.647 33.333 0.00 0.00 0.00 2.83
7201 8171 9.567776 TTCCAAAATAGATGACTCAACTTTGTA 57.432 29.630 0.00 0.00 0.00 2.41
7202 8172 8.999431 TCCAAAATAGATGACTCAACTTTGTAC 58.001 33.333 0.00 0.00 0.00 2.90
7203 8173 9.003658 CCAAAATAGATGACTCAACTTTGTACT 57.996 33.333 0.00 0.00 0.00 2.73
7236 8206 9.003658 AGTACAAAGTTGAGTCATCTATTTTGG 57.996 33.333 14.35 0.00 40.00 3.28
7237 8207 8.999431 GTACAAAGTTGAGTCATCTATTTTGGA 58.001 33.333 14.35 6.88 40.00 3.53
7238 8208 8.463930 ACAAAGTTGAGTCATCTATTTTGGAA 57.536 30.769 14.35 0.00 40.00 3.53
7239 8209 8.352942 ACAAAGTTGAGTCATCTATTTTGGAAC 58.647 33.333 14.35 0.00 40.00 3.62
7240 8210 6.727824 AGTTGAGTCATCTATTTTGGAACG 57.272 37.500 1.70 0.00 0.00 3.95
7241 8211 5.643777 AGTTGAGTCATCTATTTTGGAACGG 59.356 40.000 1.70 0.00 0.00 4.44
7242 8212 5.414789 TGAGTCATCTATTTTGGAACGGA 57.585 39.130 0.00 0.00 0.00 4.69
7243 8213 5.419542 TGAGTCATCTATTTTGGAACGGAG 58.580 41.667 0.00 0.00 0.00 4.63
7244 8214 4.770795 AGTCATCTATTTTGGAACGGAGG 58.229 43.478 0.00 0.00 0.00 4.30
7245 8215 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
7246 8216 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
7247 8217 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
7250 8220 2.845363 TTTTGGAACGGAGGGAGTAC 57.155 50.000 0.00 0.00 0.00 2.73
7268 8238 6.265422 GGGAGTACCTTGCAATGCTTTTATAT 59.735 38.462 6.82 0.00 35.85 0.86
7279 8249 6.634436 GCAATGCTTTTATATCAAGAACTCGG 59.366 38.462 0.00 0.00 0.00 4.63
7300 8270 3.181484 GGCAATTGTCTGCTGCATTGATA 60.181 43.478 15.03 1.27 42.25 2.15
7351 8321 1.089920 ATCGCAAGGATGTCAAGCAC 58.910 50.000 0.00 0.00 32.92 4.40
7356 8326 0.111061 AAGGATGTCAAGCACCAGCA 59.889 50.000 0.00 0.00 45.49 4.41
7457 8510 2.882137 CCCTTTTCTAGCAACGTTTGGA 59.118 45.455 0.00 0.00 0.00 3.53
7473 8526 8.450964 CAACGTTTGGATAGTTCATTAGATTGT 58.549 33.333 0.00 0.00 0.00 2.71
7631 8694 2.961062 GGTTCTTGATTATGCTGGCCAT 59.039 45.455 5.51 0.00 37.97 4.40
7735 8802 4.871933 AAACCCAAATGAGCTGGTTTAG 57.128 40.909 13.39 2.68 46.38 1.85
7776 8843 3.119495 GCCAAAATACTGTACCCTGCTTG 60.119 47.826 0.00 0.00 0.00 4.01
7958 9025 0.256464 AAGAGGAGGACGAGGACGAT 59.744 55.000 0.00 0.00 42.66 3.73
7976 9043 3.159785 CGATGATGATAGCGAAGACGAG 58.840 50.000 0.00 0.00 42.66 4.18
7985 9052 1.148759 GCGAAGACGAGGAGAATGGC 61.149 60.000 0.00 0.00 42.66 4.40
7991 9058 1.227350 CGAGGAGAATGGCGATGCA 60.227 57.895 0.00 0.00 0.00 3.96
8111 9178 2.154798 GAGGCCGCCCAAAGAAAACC 62.155 60.000 5.55 0.00 0.00 3.27
8116 9183 0.237498 CGCCCAAAGAAAACCGAGAC 59.763 55.000 0.00 0.00 0.00 3.36
8174 9241 4.097361 GGCAGACCCCGGAAGTCC 62.097 72.222 17.87 6.63 34.67 3.85
8182 9249 0.554792 CCCCGGAAGTCCTAGACCTA 59.445 60.000 0.73 0.00 32.18 3.08
8288 9358 0.461548 TGACTGCCTGCTATTCGAGG 59.538 55.000 0.00 0.00 0.00 4.63
8292 9362 1.895798 CTGCCTGCTATTCGAGGGATA 59.104 52.381 0.00 0.00 0.00 2.59
8367 9437 5.277779 CGCAACCGTATTATTCATTGGTGAT 60.278 40.000 0.00 0.00 33.56 3.06
8368 9438 6.073494 CGCAACCGTATTATTCATTGGTGATA 60.073 38.462 0.00 0.00 33.56 2.15
8382 9452 9.513906 TTCATTGGTGATAGTGAGTGAAATTTA 57.486 29.630 0.00 0.00 33.56 1.40
8383 9453 9.513906 TCATTGGTGATAGTGAGTGAAATTTAA 57.486 29.630 0.00 0.00 0.00 1.52
8452 9522 0.320421 TTTCCGGTGCTGCTGAGTAC 60.320 55.000 0.00 0.00 34.22 2.73
8456 9526 0.108662 CGGTGCTGCTGAGTACATGA 60.109 55.000 0.00 0.00 36.57 3.07
8480 9550 5.818136 ACATCCCATCATAACTTTTGTCG 57.182 39.130 0.00 0.00 0.00 4.35
8587 9690 3.312697 GGGCCTAGAGCAAACTTTATTCG 59.687 47.826 0.84 0.00 46.50 3.34
8623 9726 2.342279 CGACCAGTTTGGCTCCGA 59.658 61.111 0.00 0.00 42.67 4.55
8648 9751 6.451393 TGTACCCACAAGTGCATTATTTTTC 58.549 36.000 0.00 0.00 0.00 2.29
8649 9752 5.543507 ACCCACAAGTGCATTATTTTTCA 57.456 34.783 0.00 0.00 0.00 2.69
8650 9753 5.923204 ACCCACAAGTGCATTATTTTTCAA 58.077 33.333 0.00 0.00 0.00 2.69
8651 9754 6.352516 ACCCACAAGTGCATTATTTTTCAAA 58.647 32.000 0.00 0.00 0.00 2.69
8652 9755 6.259829 ACCCACAAGTGCATTATTTTTCAAAC 59.740 34.615 0.00 0.00 0.00 2.93
8653 9756 6.293353 CCCACAAGTGCATTATTTTTCAAACC 60.293 38.462 0.00 0.00 0.00 3.27
8658 9762 9.347934 CAAGTGCATTATTTTTCAAACCGTATA 57.652 29.630 0.00 0.00 0.00 1.47
8659 9763 9.915629 AAGTGCATTATTTTTCAAACCGTATAA 57.084 25.926 0.00 0.00 0.00 0.98
8676 9780 6.770303 ACCGTATAAGTTTCCTCCTAGTACTC 59.230 42.308 0.00 0.00 0.00 2.59
8690 9802 3.430042 AGTACTCCCACTGTAGTTCGA 57.570 47.619 0.00 0.00 0.00 3.71
8733 9867 8.584600 CATATACTTACACGTTCACAAGAGTTC 58.415 37.037 0.00 0.00 0.00 3.01
8740 9874 3.871594 ACGTTCACAAGAGTTCTCTTTGG 59.128 43.478 11.75 7.78 0.00 3.28
8745 9879 5.059161 TCACAAGAGTTCTCTTTGGATGTG 58.941 41.667 18.03 18.03 0.00 3.21
8780 9914 1.815421 GGTGCCAGTACGCATCCAG 60.815 63.158 0.00 0.00 41.70 3.86
8819 10033 0.908198 GAGATCAGGCAGTTGGGAGT 59.092 55.000 0.00 0.00 0.00 3.85
8882 10096 1.228245 CCCCGGGCTTATCCATGTG 60.228 63.158 17.73 0.00 36.21 3.21
8941 10156 1.134936 ACGACGGCACTTGCACATATA 60.135 47.619 3.15 0.00 44.36 0.86
8943 10158 2.155732 CGACGGCACTTGCACATATATC 59.844 50.000 3.15 0.00 44.36 1.63
8945 10160 4.556233 GACGGCACTTGCACATATATCTA 58.444 43.478 3.15 0.00 44.36 1.98
8947 10162 5.171476 ACGGCACTTGCACATATATCTATC 58.829 41.667 3.15 0.00 44.36 2.08
8949 10164 5.491070 GGCACTTGCACATATATCTATCCA 58.509 41.667 3.15 0.00 44.36 3.41
8950 10165 6.118170 GGCACTTGCACATATATCTATCCAT 58.882 40.000 3.15 0.00 44.36 3.41
8951 10166 6.600822 GGCACTTGCACATATATCTATCCATT 59.399 38.462 3.15 0.00 44.36 3.16
8952 10167 7.201679 GGCACTTGCACATATATCTATCCATTC 60.202 40.741 3.15 0.00 44.36 2.67
8954 10169 9.223099 CACTTGCACATATATCTATCCATTCAA 57.777 33.333 0.00 0.00 0.00 2.69
8955 10170 9.224267 ACTTGCACATATATCTATCCATTCAAC 57.776 33.333 0.00 0.00 0.00 3.18
8957 10172 6.818142 TGCACATATATCTATCCATTCAACGG 59.182 38.462 0.00 0.00 0.00 4.44
8958 10173 7.041721 GCACATATATCTATCCATTCAACGGA 58.958 38.462 0.00 0.00 36.84 4.69
8959 10174 7.010552 GCACATATATCTATCCATTCAACGGAC 59.989 40.741 0.00 0.00 34.69 4.79
8961 10176 2.882927 TCTATCCATTCAACGGACGG 57.117 50.000 0.00 0.00 34.69 4.79
8962 10177 1.202486 TCTATCCATTCAACGGACGGC 60.202 52.381 0.00 0.00 34.69 5.68
8963 10178 0.537653 TATCCATTCAACGGACGGCA 59.462 50.000 0.00 0.00 34.69 5.69
8964 10179 0.744414 ATCCATTCAACGGACGGCAG 60.744 55.000 0.00 0.00 34.69 4.85
8965 10180 1.671054 CCATTCAACGGACGGCAGT 60.671 57.895 0.00 0.00 0.00 4.40
8966 10181 1.635663 CCATTCAACGGACGGCAGTC 61.636 60.000 8.64 8.64 46.34 3.51
8992 10207 7.147966 CCATGATCCATCCACCATAAACATATG 60.148 40.741 0.00 0.00 0.00 1.78
8994 10209 4.406456 TCCATCCACCATAAACATATGCC 58.594 43.478 1.58 0.00 0.00 4.40
9000 10215 2.224329 ACCATAAACATATGCCGGCGTA 60.224 45.455 29.69 29.69 0.00 4.42
9002 10217 1.868469 TAAACATATGCCGGCGTACC 58.132 50.000 30.12 0.00 0.00 3.34
9096 10341 0.383491 CGCGTATCAGGGTACGTACG 60.383 60.000 18.98 15.01 46.74 3.67
9097 10342 0.657840 GCGTATCAGGGTACGTACGT 59.342 55.000 25.98 25.98 46.74 3.57
9098 10343 1.864711 GCGTATCAGGGTACGTACGTA 59.135 52.381 23.60 23.60 46.74 3.57
9099 10344 2.348591 GCGTATCAGGGTACGTACGTAC 60.349 54.545 38.26 38.26 46.74 3.67
9148 10397 0.183492 TGCTGCCATGGTAGATTCCC 59.817 55.000 31.57 14.70 0.00 3.97
9169 10418 1.279271 AGCTAAATTGTCTGCTCGGGT 59.721 47.619 0.00 0.00 0.00 5.28
9178 10427 0.247460 TCTGCTCGGGTCATGAAGTG 59.753 55.000 0.00 0.00 0.00 3.16
9182 10431 1.363744 CTCGGGTCATGAAGTGAAGC 58.636 55.000 0.00 0.00 38.90 3.86
9184 10433 0.321564 CGGGTCATGAAGTGAAGCCA 60.322 55.000 0.00 0.00 38.90 4.75
9185 10434 1.168714 GGGTCATGAAGTGAAGCCAC 58.831 55.000 0.00 0.00 43.50 5.01
9200 10449 2.024022 CACCAACGTGCGTGGTTG 59.976 61.111 7.69 7.20 43.33 3.77
9248 10498 4.440663 GCTCATTGGTTTTGGAGCCTTATC 60.441 45.833 0.00 0.00 45.31 1.75
9249 10499 4.934356 TCATTGGTTTTGGAGCCTTATCT 58.066 39.130 0.00 0.00 0.00 1.98
9254 10504 4.130857 GGTTTTGGAGCCTTATCTCTAGC 58.869 47.826 0.00 0.00 33.70 3.42
9270 10525 4.081972 TCTCTAGCACCATCTTCAGTTGAC 60.082 45.833 0.00 0.00 0.00 3.18
9300 10555 2.576298 AAGATGCTTCTTGCTGCCC 58.424 52.632 13.65 0.00 40.74 5.36
9305 10560 3.437795 CTTCTTGCTGCCCGCTGG 61.438 66.667 0.00 0.00 40.11 4.85
9375 10630 2.897326 ACTTGGGCAGTAAAATTGTCCC 59.103 45.455 0.00 0.00 39.61 4.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 5.508200 TTTTTGTGATTGTACCACACTCC 57.492 39.130 3.28 0.00 43.37 3.85
208 209 5.812127 CCTTTTGCAAAGCTAAAGTTTCAGT 59.188 36.000 12.41 0.00 44.98 3.41
254 255 1.035139 GATAACCCCATTGCAGCCTG 58.965 55.000 0.00 0.00 0.00 4.85
277 278 5.529060 GGATTAATTCCAGCGAATCAGACTT 59.471 40.000 0.00 0.00 44.74 3.01
315 316 4.866486 GCTGGGCTTAAAACTTCATTCATG 59.134 41.667 0.00 0.00 0.00 3.07
316 317 4.081476 GGCTGGGCTTAAAACTTCATTCAT 60.081 41.667 0.00 0.00 0.00 2.57
349 350 3.675775 GCTCACTGGAAACAAACTGCAAA 60.676 43.478 0.00 0.00 42.06 3.68
356 357 3.761218 TCTTGTTGCTCACTGGAAACAAA 59.239 39.130 2.96 0.00 42.06 2.83
367 370 6.472016 TCATTGTACCTAATCTTGTTGCTCA 58.528 36.000 0.00 0.00 0.00 4.26
379 382 6.204688 CAGTGTTGAAAGCTCATTGTACCTAA 59.795 38.462 0.00 0.00 0.00 2.69
388 391 4.999950 CCTAGAACAGTGTTGAAAGCTCAT 59.000 41.667 14.57 0.00 0.00 2.90
399 402 2.211250 TAGCGTCCCTAGAACAGTGT 57.789 50.000 0.00 0.00 0.00 3.55
406 409 1.549493 GGCCCTATTAGCGTCCCTAGA 60.549 57.143 0.00 0.00 0.00 2.43
417 420 4.698304 GCTAAATTATGTGCGGCCCTATTA 59.302 41.667 0.00 0.00 0.00 0.98
506 509 9.899226 CACAGTTACATCGAAGATTATATCTGA 57.101 33.333 0.00 0.00 45.12 3.27
588 591 6.588756 CGATGGTAGAACAGTACTGCTAAAAA 59.411 38.462 22.90 4.09 0.00 1.94
589 592 6.097356 CGATGGTAGAACAGTACTGCTAAAA 58.903 40.000 22.90 8.79 0.00 1.52
590 593 5.647589 CGATGGTAGAACAGTACTGCTAAA 58.352 41.667 22.90 9.10 0.00 1.85
591 594 4.439700 GCGATGGTAGAACAGTACTGCTAA 60.440 45.833 22.90 3.30 0.00 3.09
592 595 3.066342 GCGATGGTAGAACAGTACTGCTA 59.934 47.826 22.90 13.63 0.00 3.49
593 596 2.159226 GCGATGGTAGAACAGTACTGCT 60.159 50.000 22.90 11.10 0.00 4.24
594 597 2.194271 GCGATGGTAGAACAGTACTGC 58.806 52.381 22.90 7.58 0.00 4.40
595 598 2.159421 ACGCGATGGTAGAACAGTACTG 60.159 50.000 21.44 21.44 0.00 2.74
596 599 2.089980 ACGCGATGGTAGAACAGTACT 58.910 47.619 15.93 0.00 0.00 2.73
597 600 2.556534 ACGCGATGGTAGAACAGTAC 57.443 50.000 15.93 0.00 0.00 2.73
598 601 2.871133 CAACGCGATGGTAGAACAGTA 58.129 47.619 15.93 0.00 0.00 2.74
599 602 1.710013 CAACGCGATGGTAGAACAGT 58.290 50.000 15.93 0.00 0.00 3.55
600 603 0.370273 GCAACGCGATGGTAGAACAG 59.630 55.000 15.93 0.00 0.00 3.16
601 604 0.037697 AGCAACGCGATGGTAGAACA 60.038 50.000 19.81 0.00 0.00 3.18
676 679 0.322098 TTTTCGGTGGGACATGCGAT 60.322 50.000 0.00 0.00 44.52 4.58
684 687 0.178984 GGGTTTCCTTTTCGGTGGGA 60.179 55.000 0.00 0.00 0.00 4.37
750 753 2.431954 TTGGGTTTGGTCGTGGTTTA 57.568 45.000 0.00 0.00 0.00 2.01
827 830 1.666553 TGGAGATTTTCGTGCGCGT 60.667 52.632 20.50 0.00 39.49 6.01
835 838 4.664150 AGAGGAGATCGTGGAGATTTTC 57.336 45.455 0.00 0.00 40.26 2.29
840 843 2.745482 CGGTTAGAGGAGATCGTGGAGA 60.745 54.545 0.00 0.00 0.00 3.71
921 928 1.098869 TGAAACACTTTTCTGCGGCA 58.901 45.000 1.29 1.29 41.64 5.69
1306 1331 3.691342 TCACAGAACGCGGGGAGG 61.691 66.667 12.47 0.00 0.00 4.30
1445 1689 8.065007 ACTCTACTTCCCTCATCTCTTTTATCT 58.935 37.037 0.00 0.00 0.00 1.98
1446 1690 8.245195 ACTCTACTTCCCTCATCTCTTTTATC 57.755 38.462 0.00 0.00 0.00 1.75
1483 1727 2.292569 ACGAACGTGAAACTAGCAGAGA 59.707 45.455 0.00 0.00 31.75 3.10
1484 1728 2.662700 ACGAACGTGAAACTAGCAGAG 58.337 47.619 0.00 0.00 31.75 3.35
1525 1769 1.949525 CATAACGGCAGAATTCCAGGG 59.050 52.381 0.65 0.00 0.00 4.45
1642 1917 2.380410 CGGTTGGTCGTGCTGTAGC 61.380 63.158 0.00 0.00 42.50 3.58
1685 1960 1.576421 CGACACTGAAAAGCCTGCC 59.424 57.895 0.00 0.00 0.00 4.85
1703 1978 2.154854 TAGCTGATGACGCAATAGCC 57.845 50.000 0.00 0.00 37.52 3.93
1720 1995 0.735978 TGATCGCACACTGCCGTTAG 60.736 55.000 0.00 0.00 41.12 2.34
1738 2013 3.366679 GCTGTTTGATCTTGGGTGATGTG 60.367 47.826 0.00 0.00 0.00 3.21
1800 2083 2.223829 CGACAAATATCTGGAGCGGACT 60.224 50.000 0.00 0.00 0.00 3.85
1803 2086 2.225068 ACGACAAATATCTGGAGCGG 57.775 50.000 0.00 0.00 0.00 5.52
1870 2155 1.742831 GGTGATTTCCGCTGCAACATA 59.257 47.619 0.00 0.00 0.00 2.29
1882 2167 2.879826 CAAATTCAGGCCGGTGATTTC 58.120 47.619 1.90 0.00 0.00 2.17
1885 2170 0.323725 AGCAAATTCAGGCCGGTGAT 60.324 50.000 1.90 0.00 0.00 3.06
1891 2179 2.164422 GACAACCTAGCAAATTCAGGCC 59.836 50.000 0.00 0.00 32.31 5.19
1980 2268 1.278127 GTGGAATCAGGGAACGAGGAA 59.722 52.381 0.00 0.00 0.00 3.36
1981 2269 0.902531 GTGGAATCAGGGAACGAGGA 59.097 55.000 0.00 0.00 0.00 3.71
1982 2270 0.613260 TGTGGAATCAGGGAACGAGG 59.387 55.000 0.00 0.00 0.00 4.63
1983 2271 2.009042 GCTGTGGAATCAGGGAACGAG 61.009 57.143 0.00 0.00 36.12 4.18
1986 2274 0.329596 AGGCTGTGGAATCAGGGAAC 59.670 55.000 0.00 0.00 36.12 3.62
2007 2295 0.514691 GCTGTCAACGAAGAGCTTGG 59.485 55.000 0.00 0.00 0.00 3.61
2130 2426 4.222145 CCTTCTGCAGTTACCTAGGTTACA 59.778 45.833 27.96 15.12 30.99 2.41
2163 2459 4.083271 GCAGTGTTAGTGTTGAGGGAAATC 60.083 45.833 0.00 0.00 0.00 2.17
2210 2506 2.926200 CCTGACAAGATTGCTAGTGACG 59.074 50.000 0.00 0.00 0.00 4.35
2214 2510 3.423539 TTGCCTGACAAGATTGCTAGT 57.576 42.857 0.00 0.00 33.24 2.57
2240 2536 5.681337 TGTTTGATATCACGACAAAAGCA 57.319 34.783 15.30 2.20 35.74 3.91
2370 2666 4.928020 GGTAAGAGAAGAAACCCTGTAACG 59.072 45.833 0.00 0.00 0.00 3.18
2611 2912 7.481642 TGCTAGAAAGTAATAGTGCTGAGTAC 58.518 38.462 0.00 0.00 0.00 2.73
2675 2977 1.798813 CAGAAACAACAGTCGGTAGGC 59.201 52.381 0.00 0.00 0.00 3.93
2807 3111 6.153340 ACCTATAACCGTTGCAACTAGACTAA 59.847 38.462 26.09 6.64 0.00 2.24
2979 3283 1.376466 CCTGTCCCCAACTGTCCAG 59.624 63.158 0.00 0.00 0.00 3.86
3235 3564 7.996098 TCCTAAACAATTAAAAGACCTGGAG 57.004 36.000 0.00 0.00 0.00 3.86
3525 4098 7.478520 AACATCACTCACTAACTACAACAAC 57.521 36.000 0.00 0.00 0.00 3.32
3564 4137 3.567164 AGCACAGAAGAATGAAACACTGG 59.433 43.478 0.00 0.00 0.00 4.00
4618 5261 5.007682 GGCTAGGTTCCATTACAAACTCAA 58.992 41.667 0.00 0.00 0.00 3.02
4646 5290 2.244695 TGAGGAACAGTATCGGTGTGT 58.755 47.619 0.00 0.00 0.00 3.72
4800 5444 5.067544 TGAATGCTCAAAACATCAAGTGACA 59.932 36.000 0.00 0.00 0.00 3.58
5097 5750 5.185635 ACATAATCAACACAATCTGGTTGGG 59.814 40.000 0.33 0.33 46.96 4.12
5525 6447 6.422100 AGCTACTATTTCATGTAACATCAGCG 59.578 38.462 0.00 0.00 0.00 5.18
5993 6952 6.946340 TGCAGACTAAATGAGGACTAAATGA 58.054 36.000 0.00 0.00 0.00 2.57
5994 6953 7.496920 TGATGCAGACTAAATGAGGACTAAATG 59.503 37.037 0.00 0.00 0.00 2.32
5995 6954 7.568349 TGATGCAGACTAAATGAGGACTAAAT 58.432 34.615 0.00 0.00 0.00 1.40
5996 6955 6.946340 TGATGCAGACTAAATGAGGACTAAA 58.054 36.000 0.00 0.00 0.00 1.85
5997 6956 6.544928 TGATGCAGACTAAATGAGGACTAA 57.455 37.500 0.00 0.00 0.00 2.24
5998 6957 6.552725 AGATGATGCAGACTAAATGAGGACTA 59.447 38.462 0.00 0.00 0.00 2.59
5999 6958 5.366186 AGATGATGCAGACTAAATGAGGACT 59.634 40.000 0.00 0.00 0.00 3.85
6000 6959 5.609423 AGATGATGCAGACTAAATGAGGAC 58.391 41.667 0.00 0.00 0.00 3.85
6001 6960 5.883685 AGATGATGCAGACTAAATGAGGA 57.116 39.130 0.00 0.00 0.00 3.71
6002 6961 7.384477 TGATAGATGATGCAGACTAAATGAGG 58.616 38.462 0.00 0.00 0.00 3.86
6003 6962 8.305317 TCTGATAGATGATGCAGACTAAATGAG 58.695 37.037 0.00 0.00 32.85 2.90
6077 7036 2.231478 CGAACAGAGCTCAACTAAGGGA 59.769 50.000 17.77 0.00 0.00 4.20
6104 7063 6.598753 TTTAGTTGCTGAAGAGTGTTGTAC 57.401 37.500 0.00 0.00 0.00 2.90
6230 7189 5.067674 GGAATGTTATGTTAATGGCTCAGCA 59.932 40.000 0.00 0.00 0.00 4.41
6232 7191 5.829924 AGGGAATGTTATGTTAATGGCTCAG 59.170 40.000 0.00 0.00 0.00 3.35
6233 7192 5.765510 AGGGAATGTTATGTTAATGGCTCA 58.234 37.500 0.00 0.00 0.00 4.26
6236 7195 4.892934 TGGAGGGAATGTTATGTTAATGGC 59.107 41.667 0.00 0.00 0.00 4.40
6251 7210 2.042979 CCCTTTTCAGGAATGGAGGGAA 59.957 50.000 15.28 0.00 45.37 3.97
6299 7258 3.584834 GGAACCCAATGTTTTCGGAATG 58.415 45.455 0.00 0.00 37.29 2.67
6334 7293 5.244626 AGCCACAGAGAAACTAAAATTGCAT 59.755 36.000 0.00 0.00 0.00 3.96
6396 7355 0.321671 GGCTGCCTTTCTTTTTCCCC 59.678 55.000 12.43 0.00 0.00 4.81
6490 7449 2.549778 GCAAGGGAGTATCAGATCTGGC 60.550 54.545 22.42 12.75 36.25 4.85
6591 7550 6.694447 TCACAATTAGCCTTACTTAGAACGT 58.306 36.000 0.00 0.00 0.00 3.99
6627 7586 2.024414 GTGGTTGTTTCTGGTCTTGCT 58.976 47.619 0.00 0.00 0.00 3.91
6630 7589 5.445964 AGTAATGTGGTTGTTTCTGGTCTT 58.554 37.500 0.00 0.00 0.00 3.01
6637 7596 6.438763 CAAGGAGAAGTAATGTGGTTGTTTC 58.561 40.000 0.00 0.00 0.00 2.78
6642 7601 4.351111 AGACCAAGGAGAAGTAATGTGGTT 59.649 41.667 0.00 0.00 38.00 3.67
6658 7617 8.233190 TGTAATTTTTGTTTTGCAAAGACCAAG 58.767 29.630 12.41 0.00 46.40 3.61
6755 7714 4.657814 AACAGATAGAAGGGGCAAAGAA 57.342 40.909 0.00 0.00 0.00 2.52
6768 7727 9.477484 ACAACTACAACTACAAGAAACAGATAG 57.523 33.333 0.00 0.00 0.00 2.08
6770 7729 9.477484 CTACAACTACAACTACAAGAAACAGAT 57.523 33.333 0.00 0.00 0.00 2.90
6780 7739 9.293404 ACTCTAATCACTACAACTACAACTACA 57.707 33.333 0.00 0.00 0.00 2.74
6808 7767 8.141298 TCTGAGGTTGAAGTGGTGTATATTAA 57.859 34.615 0.00 0.00 0.00 1.40
6817 7776 5.505181 ACATATTCTGAGGTTGAAGTGGT 57.495 39.130 0.00 0.00 0.00 4.16
6818 7777 6.708054 GGATACATATTCTGAGGTTGAAGTGG 59.292 42.308 0.00 0.00 0.00 4.00
6822 7791 8.548025 TGAAAGGATACATATTCTGAGGTTGAA 58.452 33.333 0.00 0.00 41.41 2.69
6877 7846 6.506500 AATATCCAGCTGAGACAAAAACAG 57.493 37.500 17.39 0.00 35.14 3.16
6976 7945 2.221169 TGTTTCAAGCTTGCAGACGAT 58.779 42.857 21.99 0.00 0.00 3.73
6978 7947 2.287188 ACATGTTTCAAGCTTGCAGACG 60.287 45.455 21.99 10.28 0.00 4.18
7030 7999 7.771183 AGCTTTCTTTTGTAACAGATCAAACA 58.229 30.769 0.00 0.00 34.05 2.83
7160 8130 1.719529 TGGAACGGAGGGAGTAACAA 58.280 50.000 0.00 0.00 0.00 2.83
7161 8131 1.719529 TTGGAACGGAGGGAGTAACA 58.280 50.000 0.00 0.00 0.00 2.41
7162 8132 2.845363 TTTGGAACGGAGGGAGTAAC 57.155 50.000 0.00 0.00 0.00 2.50
7163 8133 4.778958 TCTATTTTGGAACGGAGGGAGTAA 59.221 41.667 0.00 0.00 0.00 2.24
7164 8134 4.355549 TCTATTTTGGAACGGAGGGAGTA 58.644 43.478 0.00 0.00 0.00 2.59
7165 8135 3.178865 TCTATTTTGGAACGGAGGGAGT 58.821 45.455 0.00 0.00 0.00 3.85
7166 8136 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
7167 8137 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
7168 8138 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
7169 8139 4.770795 AGTCATCTATTTTGGAACGGAGG 58.229 43.478 0.00 0.00 0.00 4.30
7170 8140 5.419542 TGAGTCATCTATTTTGGAACGGAG 58.580 41.667 0.00 0.00 0.00 4.63
7171 8141 5.414789 TGAGTCATCTATTTTGGAACGGA 57.585 39.130 0.00 0.00 0.00 4.69
7172 8142 5.643777 AGTTGAGTCATCTATTTTGGAACGG 59.356 40.000 1.70 0.00 0.00 4.44
7173 8143 6.727824 AGTTGAGTCATCTATTTTGGAACG 57.272 37.500 1.70 0.00 0.00 3.95
7174 8144 8.352942 ACAAAGTTGAGTCATCTATTTTGGAAC 58.647 33.333 14.35 0.00 40.00 3.62
7175 8145 8.463930 ACAAAGTTGAGTCATCTATTTTGGAA 57.536 30.769 14.35 0.00 40.00 3.53
7176 8146 8.999431 GTACAAAGTTGAGTCATCTATTTTGGA 58.001 33.333 14.35 6.88 40.00 3.53
7177 8147 9.003658 AGTACAAAGTTGAGTCATCTATTTTGG 57.996 33.333 14.35 0.00 40.00 3.28
7210 8180 9.003658 CCAAAATAGATGACTCAACTTTGTACT 57.996 33.333 0.00 0.00 0.00 2.73
7211 8181 8.999431 TCCAAAATAGATGACTCAACTTTGTAC 58.001 33.333 0.00 0.00 0.00 2.90
7212 8182 9.567776 TTCCAAAATAGATGACTCAACTTTGTA 57.432 29.630 0.00 0.00 0.00 2.41
7213 8183 8.352942 GTTCCAAAATAGATGACTCAACTTTGT 58.647 33.333 0.00 0.00 0.00 2.83
7214 8184 7.535258 CGTTCCAAAATAGATGACTCAACTTTG 59.465 37.037 0.00 0.00 0.00 2.77
7215 8185 7.308589 CCGTTCCAAAATAGATGACTCAACTTT 60.309 37.037 0.00 0.00 0.00 2.66
7216 8186 6.149474 CCGTTCCAAAATAGATGACTCAACTT 59.851 38.462 0.00 0.00 0.00 2.66
7217 8187 5.643777 CCGTTCCAAAATAGATGACTCAACT 59.356 40.000 0.00 0.00 0.00 3.16
7218 8188 5.642063 TCCGTTCCAAAATAGATGACTCAAC 59.358 40.000 0.00 0.00 0.00 3.18
7219 8189 5.800296 TCCGTTCCAAAATAGATGACTCAA 58.200 37.500 0.00 0.00 0.00 3.02
7220 8190 5.414789 TCCGTTCCAAAATAGATGACTCA 57.585 39.130 0.00 0.00 0.00 3.41
7221 8191 4.811557 CCTCCGTTCCAAAATAGATGACTC 59.188 45.833 0.00 0.00 0.00 3.36
7222 8192 4.384208 CCCTCCGTTCCAAAATAGATGACT 60.384 45.833 0.00 0.00 0.00 3.41
7223 8193 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
7224 8194 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
7225 8195 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
7226 8196 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
7227 8197 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
7228 8198 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
7229 8199 3.198417 GGTACTCCCTCCGTTCCAAAATA 59.802 47.826 0.00 0.00 0.00 1.40
7230 8200 2.026542 GGTACTCCCTCCGTTCCAAAAT 60.027 50.000 0.00 0.00 0.00 1.82
7231 8201 1.348696 GGTACTCCCTCCGTTCCAAAA 59.651 52.381 0.00 0.00 0.00 2.44
7232 8202 0.978907 GGTACTCCCTCCGTTCCAAA 59.021 55.000 0.00 0.00 0.00 3.28
7233 8203 0.115745 AGGTACTCCCTCCGTTCCAA 59.884 55.000 0.00 0.00 40.71 3.53
7234 8204 0.115745 AAGGTACTCCCTCCGTTCCA 59.884 55.000 0.00 0.00 45.47 3.53
7235 8205 0.535797 CAAGGTACTCCCTCCGTTCC 59.464 60.000 0.00 0.00 45.47 3.62
7236 8206 0.108281 GCAAGGTACTCCCTCCGTTC 60.108 60.000 0.00 0.00 45.47 3.95
7237 8207 0.834687 TGCAAGGTACTCCCTCCGTT 60.835 55.000 0.00 0.00 45.47 4.44
7238 8208 0.834687 TTGCAAGGTACTCCCTCCGT 60.835 55.000 0.00 0.00 45.47 4.69
7239 8209 0.541863 ATTGCAAGGTACTCCCTCCG 59.458 55.000 4.94 0.00 45.47 4.63
7240 8210 2.019156 GCATTGCAAGGTACTCCCTCC 61.019 57.143 13.30 0.00 45.47 4.30
7241 8211 1.065126 AGCATTGCAAGGTACTCCCTC 60.065 52.381 13.30 0.00 45.47 4.30
7243 8213 1.839424 AAGCATTGCAAGGTACTCCC 58.161 50.000 13.30 0.00 38.49 4.30
7244 8214 3.942130 AAAAGCATTGCAAGGTACTCC 57.058 42.857 13.30 0.00 38.49 3.85
7245 8215 7.930217 TGATATAAAAGCATTGCAAGGTACTC 58.070 34.615 13.30 0.00 38.49 2.59
7247 8217 8.405531 TCTTGATATAAAAGCATTGCAAGGTAC 58.594 33.333 13.30 0.00 34.03 3.34
7250 8220 7.977853 AGTTCTTGATATAAAAGCATTGCAAGG 59.022 33.333 11.91 6.76 34.03 3.61
7268 8238 2.807967 CAGACAATTGCCGAGTTCTTGA 59.192 45.455 5.05 0.00 0.00 3.02
7279 8249 2.357327 TCAATGCAGCAGACAATTGC 57.643 45.000 5.05 0.00 44.41 3.56
7333 8303 0.955428 GGTGCTTGACATCCTTGCGA 60.955 55.000 0.00 0.00 0.00 5.10
7339 8309 0.607489 AGTGCTGGTGCTTGACATCC 60.607 55.000 0.00 0.00 40.48 3.51
7696 8762 5.866633 TGGGTTTTATGCATCGTGAAAATTC 59.133 36.000 0.19 2.36 0.00 2.17
7735 8802 1.336240 GCAGTCAGCACAATTCCAACC 60.336 52.381 0.00 0.00 44.79 3.77
7958 9025 2.550180 CTCCTCGTCTTCGCTATCATCA 59.450 50.000 0.00 0.00 36.96 3.07
7976 9043 1.450531 CCCTTGCATCGCCATTCTCC 61.451 60.000 0.00 0.00 0.00 3.71
8102 9169 0.250597 CCGGGGTCTCGGTTTTCTTT 60.251 55.000 0.30 0.00 44.60 2.52
8111 9178 2.125512 CTTTCAGCCGGGGTCTCG 60.126 66.667 2.18 0.00 0.00 4.04
8141 9208 3.532155 CCTCGGCCTCTCTTCCCG 61.532 72.222 0.00 0.00 43.21 5.14
8174 9241 1.333177 AAGGCTCGCCATAGGTCTAG 58.667 55.000 11.02 0.00 38.92 2.43
8182 9249 0.895100 TCAGCAAAAAGGCTCGCCAT 60.895 50.000 11.02 0.00 43.68 4.40
8288 9358 7.215085 AGATTACCACTACACGGAAAATATCC 58.785 38.462 0.00 0.00 45.57 2.59
8292 9362 6.148811 CACAAGATTACCACTACACGGAAAAT 59.851 38.462 0.00 0.00 0.00 1.82
8367 9437 8.390354 CGATTGAGCATTAAATTTCACTCACTA 58.610 33.333 10.26 1.49 34.12 2.74
8368 9438 7.094634 ACGATTGAGCATTAAATTTCACTCACT 60.095 33.333 10.26 6.91 34.12 3.41
8382 9452 2.684881 GGATTCCACACGATTGAGCATT 59.315 45.455 0.00 0.00 0.00 3.56
8383 9453 2.292267 GGATTCCACACGATTGAGCAT 58.708 47.619 0.00 0.00 0.00 3.79
8439 9509 2.807967 TGTTTCATGTACTCAGCAGCAC 59.192 45.455 0.00 0.00 0.00 4.40
8452 9522 8.036575 ACAAAAGTTATGATGGGATGTTTCATG 58.963 33.333 0.00 0.00 32.58 3.07
8456 9526 6.350110 CCGACAAAAGTTATGATGGGATGTTT 60.350 38.462 0.00 0.00 0.00 2.83
8480 9550 2.233922 TCTGACGGGATGTTTCTTCTCC 59.766 50.000 0.00 0.00 0.00 3.71
8516 9586 0.105964 CACCGCGGGATTCCATTAGA 59.894 55.000 31.76 0.00 0.00 2.10
8587 9690 0.727398 GCTGTTTCGATGTACTGGGC 59.273 55.000 0.00 0.00 0.00 5.36
8623 9726 6.603940 AAAATAATGCACTTGTGGGTACAT 57.396 33.333 2.81 0.00 36.53 2.29
8648 9751 6.637657 ACTAGGAGGAAACTTATACGGTTTG 58.362 40.000 7.48 0.00 44.43 2.93
8649 9752 6.864151 ACTAGGAGGAAACTTATACGGTTT 57.136 37.500 0.00 3.53 44.43 3.27
8650 9753 7.122048 AGTACTAGGAGGAAACTTATACGGTT 58.878 38.462 0.00 0.00 44.43 4.44
8651 9754 6.667661 AGTACTAGGAGGAAACTTATACGGT 58.332 40.000 0.00 0.00 44.43 4.83
8652 9755 6.206438 GGAGTACTAGGAGGAAACTTATACGG 59.794 46.154 0.00 0.00 44.43 4.02
8653 9756 6.206438 GGGAGTACTAGGAGGAAACTTATACG 59.794 46.154 0.00 0.00 44.43 3.06
8658 9762 4.095211 GTGGGAGTACTAGGAGGAAACTT 58.905 47.826 0.00 0.00 44.43 2.66
8676 9780 5.163754 GGATTTGAATTCGAACTACAGTGGG 60.164 44.000 10.38 0.00 0.00 4.61
8740 9874 3.007398 CCTTATACCAGGAGGAGCACATC 59.993 52.174 0.00 0.00 35.71 3.06
8745 9879 1.694696 CACCCTTATACCAGGAGGAGC 59.305 57.143 0.00 0.00 35.71 4.70
8780 9914 7.981789 TGATCTCATCAACTATTCTTGTACCAC 59.018 37.037 0.00 0.00 36.11 4.16
8819 10033 3.955551 TGCTGGTACCACTTGATCGTATA 59.044 43.478 11.60 0.00 0.00 1.47
8941 10156 2.548067 GCCGTCCGTTGAATGGATAGAT 60.548 50.000 9.69 0.00 35.40 1.98
8943 10158 1.217882 GCCGTCCGTTGAATGGATAG 58.782 55.000 9.69 7.10 35.40 2.08
8945 10160 0.744414 CTGCCGTCCGTTGAATGGAT 60.744 55.000 9.69 0.00 35.40 3.41
8947 10162 1.635663 GACTGCCGTCCGTTGAATGG 61.636 60.000 0.00 0.00 33.98 3.16
8949 10164 4.278956 GACTGCCGTCCGTTGAAT 57.721 55.556 0.00 0.00 33.98 2.57
8957 10172 0.107456 ATGGATCATGGACTGCCGTC 59.893 55.000 0.00 0.00 39.49 4.79
8958 10173 0.107456 GATGGATCATGGACTGCCGT 59.893 55.000 0.00 0.00 36.79 5.68
8959 10174 0.604780 GGATGGATCATGGACTGCCG 60.605 60.000 0.00 0.00 36.79 5.69
8961 10176 1.602311 GTGGATGGATCATGGACTGC 58.398 55.000 0.00 0.00 0.00 4.40
8962 10177 1.491754 TGGTGGATGGATCATGGACTG 59.508 52.381 0.00 0.00 0.00 3.51
8963 10178 1.897473 TGGTGGATGGATCATGGACT 58.103 50.000 0.00 0.00 0.00 3.85
8964 10179 2.965671 ATGGTGGATGGATCATGGAC 57.034 50.000 0.00 0.00 0.00 4.02
8965 10180 4.167697 TGTTTATGGTGGATGGATCATGGA 59.832 41.667 0.00 0.00 0.00 3.41
8966 10181 4.472496 TGTTTATGGTGGATGGATCATGG 58.528 43.478 0.00 0.00 0.00 3.66
8967 10182 7.629866 GCATATGTTTATGGTGGATGGATCATG 60.630 40.741 4.29 0.00 36.49 3.07
8968 10183 6.379133 GCATATGTTTATGGTGGATGGATCAT 59.621 38.462 4.29 0.00 36.49 2.45
8969 10184 5.711506 GCATATGTTTATGGTGGATGGATCA 59.288 40.000 4.29 0.00 36.49 2.92
8970 10185 5.126061 GGCATATGTTTATGGTGGATGGATC 59.874 44.000 4.29 0.00 36.49 3.36
8971 10186 5.018809 GGCATATGTTTATGGTGGATGGAT 58.981 41.667 4.29 0.00 36.49 3.41
8972 10187 4.406456 GGCATATGTTTATGGTGGATGGA 58.594 43.478 4.29 0.00 36.49 3.41
9000 10215 4.250305 AGTGAAACGCTGCCGGGT 62.250 61.111 2.18 0.00 45.86 5.28
9002 10217 2.954753 GACAGTGAAACGCTGCCGG 61.955 63.158 11.42 0.00 44.75 6.13
9008 10223 0.385974 GCACATGGACAGTGAAACGC 60.386 55.000 0.00 0.00 45.86 4.84
9034 10249 2.124942 GCTGCTACAGTGGGAGGC 60.125 66.667 7.56 0.00 33.43 4.70
9096 10341 1.375523 CAACGGTGCCCTCTGGTAC 60.376 63.158 0.00 0.00 45.72 3.34
9097 10342 1.534476 TCAACGGTGCCCTCTGGTA 60.534 57.895 0.00 0.00 0.00 3.25
9098 10343 2.847234 TCAACGGTGCCCTCTGGT 60.847 61.111 0.00 0.00 0.00 4.00
9099 10344 2.358737 GTCAACGGTGCCCTCTGG 60.359 66.667 0.00 0.00 0.00 3.86
9106 10351 2.040544 CCCTCATGGTCAACGGTGC 61.041 63.158 0.00 0.00 0.00 5.01
9111 10356 0.393537 CAGCCTCCCTCATGGTCAAC 60.394 60.000 0.00 0.00 34.77 3.18
9148 10397 1.667724 CCCGAGCAGACAATTTAGCTG 59.332 52.381 0.00 0.00 37.48 4.24
9169 10418 2.229792 GTTGGTGGCTTCACTTCATGA 58.770 47.619 0.00 0.00 41.00 3.07
9178 10427 3.276846 ACGCACGTTGGTGGCTTC 61.277 61.111 0.00 0.00 44.54 3.86
9198 10447 3.709587 AGAATCCTCCTCGTAAGTCCAA 58.290 45.455 0.00 0.00 39.48 3.53
9200 10449 3.243134 CGAAGAATCCTCCTCGTAAGTCC 60.243 52.174 0.00 0.00 39.48 3.85
9248 10498 4.180057 GTCAACTGAAGATGGTGCTAGAG 58.820 47.826 0.00 0.00 0.00 2.43
9249 10499 3.367395 CGTCAACTGAAGATGGTGCTAGA 60.367 47.826 0.00 0.00 0.00 2.43
9254 10504 1.462283 CTGCGTCAACTGAAGATGGTG 59.538 52.381 0.00 0.00 0.00 4.17
9270 10525 1.446907 AGCATCTTGAGGTTTCTGCG 58.553 50.000 0.00 0.00 34.89 5.18
9300 10555 3.889196 TTTTGTTAGCACTTACCAGCG 57.111 42.857 0.00 0.00 35.48 5.18
9305 10560 6.267496 ACCCATGATTTTGTTAGCACTTAC 57.733 37.500 0.00 0.00 0.00 2.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.