Multiple sequence alignment - TraesCS2B01G520500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G520500 chr2B 100.000 7246 0 0 1 7246 715034639 715027394 0.000000e+00 13381
1 TraesCS2B01G520500 chr2B 96.528 864 28 2 6381 7243 302910194 302911056 0.000000e+00 1428
2 TraesCS2B01G520500 chr2B 95.255 864 40 1 6383 7246 548527040 548526178 0.000000e+00 1367
3 TraesCS2B01G520500 chr2B 93.296 179 12 0 5735 5913 540428259 540428437 1.550000e-66 265
4 TraesCS2B01G520500 chr2A 96.023 2841 92 6 2915 5737 724622977 724620140 0.000000e+00 4601
5 TraesCS2B01G520500 chr2A 90.152 2366 110 56 732 3043 724625181 724622885 0.000000e+00 2964
6 TraesCS2B01G520500 chr2A 94.923 453 16 4 5901 6350 724620138 724619690 0.000000e+00 702
7 TraesCS2B01G520500 chr2A 88.192 542 56 5 17 556 724625747 724625212 2.200000e-179 640
8 TraesCS2B01G520500 chr2D 95.874 2836 101 5 2915 5737 590242585 590239753 0.000000e+00 4575
9 TraesCS2B01G520500 chr2D 91.332 2388 100 53 708 3043 590244825 590242493 0.000000e+00 3164
10 TraesCS2B01G520500 chr2D 95.333 857 39 1 6387 7243 118326805 118325950 0.000000e+00 1360
11 TraesCS2B01G520500 chr2D 95.316 854 39 1 6390 7243 432083291 432082439 0.000000e+00 1354
12 TraesCS2B01G520500 chr2D 95.364 453 14 4 5901 6350 590239751 590239303 0.000000e+00 713
13 TraesCS2B01G520500 chr2D 85.375 253 30 3 472 723 590245192 590244946 9.330000e-64 255
14 TraesCS2B01G520500 chr3B 96.644 864 27 2 6381 7243 384313009 384313871 0.000000e+00 1434
15 TraesCS2B01G520500 chr3B 94.767 172 9 0 5733 5904 52743938 52744109 1.200000e-67 268
16 TraesCS2B01G520500 chr3B 93.750 176 11 0 5733 5908 523154378 523154203 1.550000e-66 265
17 TraesCS2B01G520500 chr3B 91.935 186 14 1 5737 5921 428704038 428703853 7.210000e-65 259
18 TraesCS2B01G520500 chr1B 96.309 867 30 2 6381 7246 444941892 444941027 0.000000e+00 1423
19 TraesCS2B01G520500 chr7D 95.271 867 38 2 6379 7243 191502144 191501279 0.000000e+00 1371
20 TraesCS2B01G520500 chr7D 93.333 180 9 3 5724 5901 242492199 242492377 5.570000e-66 263
21 TraesCS2B01G520500 chr3D 95.012 862 42 1 6382 7243 380838011 380838871 0.000000e+00 1352
22 TraesCS2B01G520500 chr7A 94.780 862 44 1 6382 7243 174843539 174842679 0.000000e+00 1341
23 TraesCS2B01G520500 chr6B 96.970 165 5 0 5737 5901 95349576 95349412 1.990000e-70 278
24 TraesCS2B01G520500 chr5D 95.808 167 7 0 5738 5904 198477388 198477554 3.330000e-68 270
25 TraesCS2B01G520500 chr4B 95.808 167 7 0 5738 5904 338425783 338425949 3.330000e-68 270
26 TraesCS2B01G520500 chr6A 93.370 181 11 1 5729 5908 458553853 458554033 4.310000e-67 267


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G520500 chr2B 715027394 715034639 7245 True 13381.00 13381 100.00000 1 7246 1 chr2B.!!$R2 7245
1 TraesCS2B01G520500 chr2B 302910194 302911056 862 False 1428.00 1428 96.52800 6381 7243 1 chr2B.!!$F1 862
2 TraesCS2B01G520500 chr2B 548526178 548527040 862 True 1367.00 1367 95.25500 6383 7246 1 chr2B.!!$R1 863
3 TraesCS2B01G520500 chr2A 724619690 724625747 6057 True 2226.75 4601 92.32250 17 6350 4 chr2A.!!$R1 6333
4 TraesCS2B01G520500 chr2D 590239303 590245192 5889 True 2176.75 4575 91.98625 472 6350 4 chr2D.!!$R3 5878
5 TraesCS2B01G520500 chr2D 118325950 118326805 855 True 1360.00 1360 95.33300 6387 7243 1 chr2D.!!$R1 856
6 TraesCS2B01G520500 chr2D 432082439 432083291 852 True 1354.00 1354 95.31600 6390 7243 1 chr2D.!!$R2 853
7 TraesCS2B01G520500 chr3B 384313009 384313871 862 False 1434.00 1434 96.64400 6381 7243 1 chr3B.!!$F2 862
8 TraesCS2B01G520500 chr1B 444941027 444941892 865 True 1423.00 1423 96.30900 6381 7246 1 chr1B.!!$R1 865
9 TraesCS2B01G520500 chr7D 191501279 191502144 865 True 1371.00 1371 95.27100 6379 7243 1 chr7D.!!$R1 864
10 TraesCS2B01G520500 chr3D 380838011 380838871 860 False 1352.00 1352 95.01200 6382 7243 1 chr3D.!!$F1 861
11 TraesCS2B01G520500 chr7A 174842679 174843539 860 True 1341.00 1341 94.78000 6382 7243 1 chr7A.!!$R1 861

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
19 20 0.249741 ATACGTAAGCGGACATGCCC 60.250 55.000 0.00 0.00 43.45 5.36 F
133 134 0.269173 AGATTCCCCCTCCCCTACAG 59.731 60.000 0.00 0.00 0.00 2.74 F
200 201 0.309612 GTTTGGTTTCGTCGGCACAT 59.690 50.000 0.00 0.00 0.00 3.21 F
590 592 0.391597 ATCACTTGTTCGACCACCGT 59.608 50.000 0.00 0.00 39.75 4.83 F
718 764 0.459489 GGCGTACCAACCGTACCATA 59.541 55.000 0.00 0.00 43.93 2.74 F
1219 1541 0.540923 GCTGCCTCAAGATCCTCTGT 59.459 55.000 0.00 0.00 0.00 3.41 F
1805 2140 1.205820 CATGATGCCATGCTACGCG 59.794 57.895 3.53 3.53 43.06 6.01 F
1893 2229 1.899142 TGGATTTTGCTAACCCTTGCC 59.101 47.619 0.00 0.00 0.00 4.52 F
2900 3249 2.742053 CGAAGAGAAGCCCGATGAAAAA 59.258 45.455 0.00 0.00 0.00 1.94 F
4096 4486 0.550914 AACCACTGAAGGCCACTTGA 59.449 50.000 5.01 0.00 36.97 3.02 F
5754 6156 0.115745 AGTACTCCCTCCGTTCCCAA 59.884 55.000 0.00 0.00 0.00 4.12 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1388 1714 0.881796 CCCGCCCAAAAGAGAAGAAC 59.118 55.000 0.00 0.00 0.00 3.01 R
2073 2420 1.131638 AGAATTCCCGCTGATAGGCA 58.868 50.000 0.65 0.00 0.00 4.75 R
2076 2423 1.143305 CGCAGAATTCCCGCTGATAG 58.857 55.000 13.77 0.00 34.06 2.08 R
2209 2556 1.888512 TCCAAACCAAGCTGAATCTGC 59.111 47.619 3.82 3.82 0.00 4.26 R
2672 3021 1.861982 GGTGCCTTGTAGACCTCCTA 58.138 55.000 0.00 0.00 0.00 2.94 R
2874 3223 0.038526 TCGGGCTTCTCTTCGTGAAC 60.039 55.000 0.00 0.00 0.00 3.18 R
2876 3225 0.173481 CATCGGGCTTCTCTTCGTGA 59.827 55.000 0.00 0.00 0.00 4.35 R
2986 3335 1.051008 TTCAGCTGGCTCTTCACTCA 58.949 50.000 15.13 0.00 0.00 3.41 R
4738 5140 0.035439 CCAACTGTGCTTCCGGGTAT 60.035 55.000 0.00 0.00 0.00 2.73 R
5883 6285 0.115745 ACTACTCCCTCCGTTCCCAA 59.884 55.000 0.00 0.00 0.00 4.12 R
7158 7563 0.837691 ATGCACTGAGGGTCTCACCA 60.838 55.000 0.00 0.00 41.02 4.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.284197 ATACGTAAGCGGACATGCC 57.716 52.632 0.00 0.00 43.45 4.40
19 20 0.249741 ATACGTAAGCGGACATGCCC 60.250 55.000 0.00 0.00 43.45 5.36
20 21 1.605971 TACGTAAGCGGACATGCCCA 61.606 55.000 0.00 0.00 43.45 5.36
21 22 1.743623 CGTAAGCGGACATGCCCAA 60.744 57.895 0.00 0.00 34.65 4.12
22 23 1.705337 CGTAAGCGGACATGCCCAAG 61.705 60.000 0.00 0.00 34.65 3.61
23 24 1.748879 TAAGCGGACATGCCCAAGC 60.749 57.895 0.00 0.00 40.48 4.01
45 46 2.618368 TTTGCGGCTGTATAGGGGGC 62.618 60.000 0.00 0.00 0.00 5.80
46 47 4.331067 GCGGCTGTATAGGGGGCC 62.331 72.222 0.00 0.00 41.02 5.80
61 62 2.202919 GCCGGATTTGCCAATGCC 60.203 61.111 5.05 0.00 36.33 4.40
62 63 2.104729 CCGGATTTGCCAATGCCG 59.895 61.111 0.00 10.48 41.53 5.69
63 64 2.104729 CGGATTTGCCAATGCCGG 59.895 61.111 9.78 0.00 38.40 6.13
64 65 2.709883 CGGATTTGCCAATGCCGGT 61.710 57.895 1.90 0.00 38.40 5.28
84 85 4.688021 GGTTGTAGATGCTCTAACCTCTG 58.312 47.826 0.00 0.00 30.69 3.35
85 86 4.116238 GTTGTAGATGCTCTAACCTCTGC 58.884 47.826 0.00 0.00 29.58 4.26
102 103 1.685820 GCCCTACATATGGCCCCTC 59.314 63.158 7.80 0.00 41.97 4.30
107 108 3.041946 CCTACATATGGCCCCTCTATCC 58.958 54.545 7.80 0.00 0.00 2.59
124 125 2.624846 TCCCCATTTAGATTCCCCCT 57.375 50.000 0.00 0.00 0.00 4.79
133 134 0.269173 AGATTCCCCCTCCCCTACAG 59.731 60.000 0.00 0.00 0.00 2.74
138 139 0.846693 CCCCCTCCCCTACAGATTTG 59.153 60.000 0.00 0.00 0.00 2.32
139 140 1.628043 CCCCCTCCCCTACAGATTTGA 60.628 57.143 0.00 0.00 0.00 2.69
141 142 2.785857 CCCCTCCCCTACAGATTTGATT 59.214 50.000 0.00 0.00 0.00 2.57
142 143 3.205282 CCCCTCCCCTACAGATTTGATTT 59.795 47.826 0.00 0.00 0.00 2.17
144 145 4.464947 CCTCCCCTACAGATTTGATTTCC 58.535 47.826 0.00 0.00 0.00 3.13
145 146 4.464947 CTCCCCTACAGATTTGATTTCCC 58.535 47.826 0.00 0.00 0.00 3.97
146 147 3.204382 TCCCCTACAGATTTGATTTCCCC 59.796 47.826 0.00 0.00 0.00 4.81
147 148 3.566351 CCCTACAGATTTGATTTCCCCC 58.434 50.000 0.00 0.00 0.00 5.40
174 175 5.366829 AACAACATTAACCGTCTTAAGCC 57.633 39.130 0.00 0.00 0.00 4.35
175 176 4.391155 ACAACATTAACCGTCTTAAGCCA 58.609 39.130 0.00 0.00 0.00 4.75
190 191 6.866770 GTCTTAAGCCAATAAGGTTTGGTTTC 59.133 38.462 8.32 0.00 44.01 2.78
193 194 3.254903 AGCCAATAAGGTTTGGTTTCGTC 59.745 43.478 5.22 0.00 46.54 4.20
200 201 0.309612 GTTTGGTTTCGTCGGCACAT 59.690 50.000 0.00 0.00 0.00 3.21
220 221 9.979578 GGCACATAAAATCCATATTTTCACATA 57.020 29.630 0.00 0.00 42.86 2.29
321 323 7.507733 TCTTAATCGAAGGTCTACTATCACC 57.492 40.000 0.00 0.00 35.67 4.02
329 331 2.361438 GGTCTACTATCACCGACTTGGG 59.639 54.545 0.00 0.00 44.64 4.12
330 332 3.022406 GTCTACTATCACCGACTTGGGT 58.978 50.000 0.00 0.00 44.64 4.51
331 333 3.066481 GTCTACTATCACCGACTTGGGTC 59.934 52.174 0.00 0.00 44.64 4.46
347 349 8.154649 GACTTGGGTCGTATAATTCATCAAAT 57.845 34.615 0.00 0.00 32.47 2.32
348 350 9.268268 GACTTGGGTCGTATAATTCATCAAATA 57.732 33.333 0.00 0.00 32.47 1.40
406 408 9.599866 AATGAAGATATTACATCACAACTTCGA 57.400 29.630 0.00 0.00 36.38 3.71
478 480 3.623060 TGGAAGCGAAGATACATGCTTTC 59.377 43.478 0.00 0.00 46.84 2.62
518 520 2.899256 ACCATGCAACATACCAAGCTTT 59.101 40.909 0.00 0.00 0.00 3.51
525 527 5.154222 GCAACATACCAAGCTTTCAGTTAC 58.846 41.667 0.00 0.00 0.00 2.50
535 537 2.479837 CTTTCAGTTACCGTGCAGTCA 58.520 47.619 0.00 0.00 0.00 3.41
556 558 3.744942 CAGATTCTTCTGTGGCCATATCG 59.255 47.826 9.72 0.00 43.73 2.92
557 559 3.643320 AGATTCTTCTGTGGCCATATCGA 59.357 43.478 9.72 0.00 0.00 3.59
558 560 4.285517 AGATTCTTCTGTGGCCATATCGAT 59.714 41.667 9.72 2.16 0.00 3.59
559 561 3.667497 TCTTCTGTGGCCATATCGATC 57.333 47.619 9.72 0.00 0.00 3.69
560 562 3.234353 TCTTCTGTGGCCATATCGATCT 58.766 45.455 9.72 0.00 0.00 2.75
561 563 3.643320 TCTTCTGTGGCCATATCGATCTT 59.357 43.478 9.72 0.00 0.00 2.40
562 564 4.101585 TCTTCTGTGGCCATATCGATCTTT 59.898 41.667 9.72 0.00 0.00 2.52
563 565 5.304357 TCTTCTGTGGCCATATCGATCTTTA 59.696 40.000 9.72 0.00 0.00 1.85
564 566 5.545063 TCTGTGGCCATATCGATCTTTAA 57.455 39.130 9.72 0.00 0.00 1.52
565 567 6.114187 TCTGTGGCCATATCGATCTTTAAT 57.886 37.500 9.72 0.00 0.00 1.40
566 568 5.934043 TCTGTGGCCATATCGATCTTTAATG 59.066 40.000 9.72 0.00 0.00 1.90
567 569 5.863965 TGTGGCCATATCGATCTTTAATGA 58.136 37.500 9.72 0.00 0.00 2.57
568 570 6.475504 TGTGGCCATATCGATCTTTAATGAT 58.524 36.000 9.72 3.62 0.00 2.45
569 571 6.372381 TGTGGCCATATCGATCTTTAATGATG 59.628 38.462 9.72 0.00 0.00 3.07
570 572 6.595326 GTGGCCATATCGATCTTTAATGATGA 59.405 38.462 9.72 7.11 0.00 2.92
571 573 7.119699 GTGGCCATATCGATCTTTAATGATGAA 59.880 37.037 9.72 0.00 0.00 2.57
572 574 7.830697 TGGCCATATCGATCTTTAATGATGAAT 59.169 33.333 0.00 4.93 0.00 2.57
573 575 8.341173 GGCCATATCGATCTTTAATGATGAATC 58.659 37.037 0.00 0.00 0.00 2.52
574 576 8.886719 GCCATATCGATCTTTAATGATGAATCA 58.113 33.333 0.00 0.00 41.70 2.57
579 581 8.722480 TCGATCTTTAATGATGAATCACTTGT 57.278 30.769 8.48 0.00 40.03 3.16
580 582 9.166173 TCGATCTTTAATGATGAATCACTTGTT 57.834 29.630 8.48 0.00 40.03 2.83
581 583 9.430838 CGATCTTTAATGATGAATCACTTGTTC 57.569 33.333 8.48 0.00 40.03 3.18
582 584 9.430838 GATCTTTAATGATGAATCACTTGTTCG 57.569 33.333 8.48 0.00 40.03 3.95
583 585 8.546597 TCTTTAATGATGAATCACTTGTTCGA 57.453 30.769 0.00 0.00 40.03 3.71
584 586 8.443160 TCTTTAATGATGAATCACTTGTTCGAC 58.557 33.333 0.00 0.00 40.03 4.20
585 587 5.551760 AATGATGAATCACTTGTTCGACC 57.448 39.130 0.00 0.00 40.03 4.79
586 588 4.001618 TGATGAATCACTTGTTCGACCA 57.998 40.909 0.00 0.00 0.00 4.02
587 589 3.745975 TGATGAATCACTTGTTCGACCAC 59.254 43.478 0.00 0.00 0.00 4.16
588 590 2.489971 TGAATCACTTGTTCGACCACC 58.510 47.619 0.00 0.00 0.00 4.61
589 591 1.459592 GAATCACTTGTTCGACCACCG 59.540 52.381 0.00 0.00 40.25 4.94
590 592 0.391597 ATCACTTGTTCGACCACCGT 59.608 50.000 0.00 0.00 39.75 4.83
591 593 1.031235 TCACTTGTTCGACCACCGTA 58.969 50.000 0.00 0.00 39.75 4.02
592 594 1.614903 TCACTTGTTCGACCACCGTAT 59.385 47.619 0.00 0.00 39.75 3.06
593 595 2.819019 TCACTTGTTCGACCACCGTATA 59.181 45.455 0.00 0.00 39.75 1.47
594 596 3.119743 TCACTTGTTCGACCACCGTATAG 60.120 47.826 0.00 0.00 39.75 1.31
595 597 2.821969 ACTTGTTCGACCACCGTATAGT 59.178 45.455 0.00 0.00 39.75 2.12
631 677 6.386342 TGGAGATCAAATCCTTGAGAGAGAAT 59.614 38.462 0.00 0.00 44.68 2.40
632 678 6.930722 GGAGATCAAATCCTTGAGAGAGAATC 59.069 42.308 0.00 0.00 44.68 2.52
633 679 6.514947 AGATCAAATCCTTGAGAGAGAATCG 58.485 40.000 0.00 0.00 44.68 3.34
634 680 5.016051 TCAAATCCTTGAGAGAGAATCGG 57.984 43.478 0.00 0.00 37.05 4.18
635 681 4.125703 CAAATCCTTGAGAGAGAATCGGG 58.874 47.826 0.00 0.00 35.61 5.14
636 682 2.828661 TCCTTGAGAGAGAATCGGGA 57.171 50.000 0.00 0.00 42.67 5.14
637 683 2.660572 TCCTTGAGAGAGAATCGGGAG 58.339 52.381 0.00 0.00 42.67 4.30
638 684 2.024846 TCCTTGAGAGAGAATCGGGAGT 60.025 50.000 0.00 0.00 42.67 3.85
639 685 2.763448 CCTTGAGAGAGAATCGGGAGTT 59.237 50.000 0.00 0.00 42.67 3.01
640 686 3.196685 CCTTGAGAGAGAATCGGGAGTTT 59.803 47.826 0.00 0.00 42.67 2.66
641 687 4.402793 CCTTGAGAGAGAATCGGGAGTTTA 59.597 45.833 0.00 0.00 42.67 2.01
642 688 5.069781 CCTTGAGAGAGAATCGGGAGTTTAT 59.930 44.000 0.00 0.00 42.67 1.40
643 689 6.407525 CCTTGAGAGAGAATCGGGAGTTTATT 60.408 42.308 0.00 0.00 42.67 1.40
644 690 6.150396 TGAGAGAGAATCGGGAGTTTATTC 57.850 41.667 0.00 0.00 42.67 1.75
645 691 5.656859 TGAGAGAGAATCGGGAGTTTATTCA 59.343 40.000 0.00 0.00 42.67 2.57
646 692 6.154534 TGAGAGAGAATCGGGAGTTTATTCAA 59.845 38.462 0.00 0.00 42.67 2.69
647 693 6.342111 AGAGAGAATCGGGAGTTTATTCAAC 58.658 40.000 0.00 0.00 42.67 3.18
648 694 6.049955 AGAGAATCGGGAGTTTATTCAACA 57.950 37.500 0.00 0.00 42.67 3.33
649 695 6.472887 AGAGAATCGGGAGTTTATTCAACAA 58.527 36.000 0.00 0.00 42.67 2.83
650 696 6.940298 AGAGAATCGGGAGTTTATTCAACAAA 59.060 34.615 0.00 0.00 42.67 2.83
651 697 7.447238 AGAGAATCGGGAGTTTATTCAACAAAA 59.553 33.333 0.00 0.00 42.67 2.44
652 698 7.593825 AGAATCGGGAGTTTATTCAACAAAAG 58.406 34.615 0.00 0.00 37.93 2.27
653 699 6.894339 ATCGGGAGTTTATTCAACAAAAGT 57.106 33.333 0.00 0.00 37.93 2.66
654 700 6.702716 TCGGGAGTTTATTCAACAAAAGTT 57.297 33.333 0.00 0.00 37.93 2.66
655 701 7.102847 TCGGGAGTTTATTCAACAAAAGTTT 57.897 32.000 0.00 0.00 37.93 2.66
656 702 7.197703 TCGGGAGTTTATTCAACAAAAGTTTC 58.802 34.615 0.00 0.00 37.93 2.78
657 703 6.975772 CGGGAGTTTATTCAACAAAAGTTTCA 59.024 34.615 0.00 0.00 37.93 2.69
658 704 7.651704 CGGGAGTTTATTCAACAAAAGTTTCAT 59.348 33.333 0.00 0.00 37.93 2.57
659 705 8.978539 GGGAGTTTATTCAACAAAAGTTTCATC 58.021 33.333 0.00 0.00 37.93 2.92
660 706 9.528018 GGAGTTTATTCAACAAAAGTTTCATCA 57.472 29.630 0.00 0.00 37.93 3.07
662 708 9.868277 AGTTTATTCAACAAAAGTTTCATCACA 57.132 25.926 0.00 0.00 37.93 3.58
664 710 9.868277 TTTATTCAACAAAAGTTTCATCACAGT 57.132 25.926 0.00 0.00 0.00 3.55
665 711 7.992180 ATTCAACAAAAGTTTCATCACAGTC 57.008 32.000 0.00 0.00 0.00 3.51
666 712 6.507958 TCAACAAAAGTTTCATCACAGTCA 57.492 33.333 0.00 0.00 0.00 3.41
667 713 6.554419 TCAACAAAAGTTTCATCACAGTCAG 58.446 36.000 0.00 0.00 0.00 3.51
668 714 6.374053 TCAACAAAAGTTTCATCACAGTCAGA 59.626 34.615 0.00 0.00 0.00 3.27
669 715 6.757897 ACAAAAGTTTCATCACAGTCAGAA 57.242 33.333 0.00 0.00 0.00 3.02
670 716 6.555315 ACAAAAGTTTCATCACAGTCAGAAC 58.445 36.000 0.00 0.00 0.00 3.01
671 717 6.150976 ACAAAAGTTTCATCACAGTCAGAACA 59.849 34.615 0.00 0.00 0.00 3.18
672 718 5.998454 AAGTTTCATCACAGTCAGAACAG 57.002 39.130 0.00 0.00 0.00 3.16
673 719 5.282055 AGTTTCATCACAGTCAGAACAGA 57.718 39.130 0.00 0.00 0.00 3.41
674 720 5.295950 AGTTTCATCACAGTCAGAACAGAG 58.704 41.667 0.00 0.00 0.00 3.35
675 721 4.944619 TTCATCACAGTCAGAACAGAGT 57.055 40.909 0.00 0.00 0.00 3.24
676 722 6.040955 AGTTTCATCACAGTCAGAACAGAGTA 59.959 38.462 0.00 0.00 0.00 2.59
677 723 5.635417 TCATCACAGTCAGAACAGAGTAG 57.365 43.478 0.00 0.00 0.00 2.57
678 724 5.316987 TCATCACAGTCAGAACAGAGTAGA 58.683 41.667 0.00 0.00 0.00 2.59
679 725 5.770162 TCATCACAGTCAGAACAGAGTAGAA 59.230 40.000 0.00 0.00 0.00 2.10
680 726 5.697473 TCACAGTCAGAACAGAGTAGAAG 57.303 43.478 0.00 0.00 0.00 2.85
681 727 4.520874 TCACAGTCAGAACAGAGTAGAAGG 59.479 45.833 0.00 0.00 0.00 3.46
682 728 4.279671 CACAGTCAGAACAGAGTAGAAGGT 59.720 45.833 0.00 0.00 0.00 3.50
683 729 4.896482 ACAGTCAGAACAGAGTAGAAGGTT 59.104 41.667 0.00 0.00 0.00 3.50
684 730 6.016192 CACAGTCAGAACAGAGTAGAAGGTTA 60.016 42.308 0.00 0.00 0.00 2.85
685 731 6.722129 ACAGTCAGAACAGAGTAGAAGGTTAT 59.278 38.462 0.00 0.00 0.00 1.89
686 732 7.233757 ACAGTCAGAACAGAGTAGAAGGTTATT 59.766 37.037 0.00 0.00 0.00 1.40
687 733 8.091449 CAGTCAGAACAGAGTAGAAGGTTATTT 58.909 37.037 0.00 0.00 0.00 1.40
688 734 8.091449 AGTCAGAACAGAGTAGAAGGTTATTTG 58.909 37.037 0.00 0.00 0.00 2.32
689 735 7.332182 GTCAGAACAGAGTAGAAGGTTATTTGG 59.668 40.741 0.00 0.00 0.00 3.28
690 736 6.092807 CAGAACAGAGTAGAAGGTTATTTGGC 59.907 42.308 0.00 0.00 0.00 4.52
691 737 5.499004 ACAGAGTAGAAGGTTATTTGGCA 57.501 39.130 0.00 0.00 0.00 4.92
692 738 5.876357 ACAGAGTAGAAGGTTATTTGGCAA 58.124 37.500 0.00 0.00 0.00 4.52
693 739 5.940470 ACAGAGTAGAAGGTTATTTGGCAAG 59.060 40.000 0.00 0.00 0.00 4.01
694 740 6.173339 CAGAGTAGAAGGTTATTTGGCAAGA 58.827 40.000 0.00 0.00 0.00 3.02
695 741 6.825721 CAGAGTAGAAGGTTATTTGGCAAGAT 59.174 38.462 0.00 0.27 0.00 2.40
696 742 7.987458 CAGAGTAGAAGGTTATTTGGCAAGATA 59.013 37.037 0.00 0.00 0.00 1.98
697 743 8.718656 AGAGTAGAAGGTTATTTGGCAAGATAT 58.281 33.333 0.00 0.00 0.00 1.63
698 744 9.998106 GAGTAGAAGGTTATTTGGCAAGATATA 57.002 33.333 0.00 0.00 0.00 0.86
700 746 9.220767 GTAGAAGGTTATTTGGCAAGATATAGG 57.779 37.037 0.00 0.00 0.00 2.57
701 747 6.717084 AGAAGGTTATTTGGCAAGATATAGGC 59.283 38.462 0.00 0.00 0.00 3.93
702 748 5.003804 AGGTTATTTGGCAAGATATAGGCG 58.996 41.667 0.00 0.00 0.00 5.52
703 749 4.760204 GGTTATTTGGCAAGATATAGGCGT 59.240 41.667 0.00 0.00 0.00 5.68
704 750 5.935789 GGTTATTTGGCAAGATATAGGCGTA 59.064 40.000 0.00 0.00 0.00 4.42
705 751 6.128363 GGTTATTTGGCAAGATATAGGCGTAC 60.128 42.308 0.00 0.00 0.00 3.67
706 752 3.396260 TTGGCAAGATATAGGCGTACC 57.604 47.619 0.00 0.00 0.00 3.34
707 753 2.321719 TGGCAAGATATAGGCGTACCA 58.678 47.619 0.00 0.00 39.06 3.25
708 754 2.701423 TGGCAAGATATAGGCGTACCAA 59.299 45.455 0.00 0.00 39.06 3.67
709 755 3.064931 GGCAAGATATAGGCGTACCAAC 58.935 50.000 0.00 0.00 39.06 3.77
710 756 3.064931 GCAAGATATAGGCGTACCAACC 58.935 50.000 0.00 0.00 39.06 3.77
711 757 3.314553 CAAGATATAGGCGTACCAACCG 58.685 50.000 0.00 0.00 39.06 4.44
712 758 2.590821 AGATATAGGCGTACCAACCGT 58.409 47.619 0.00 0.00 39.06 4.83
713 759 3.754965 AGATATAGGCGTACCAACCGTA 58.245 45.455 0.00 0.00 39.06 4.02
714 760 3.503748 AGATATAGGCGTACCAACCGTAC 59.496 47.826 0.00 0.00 43.45 3.67
715 761 0.746659 ATAGGCGTACCAACCGTACC 59.253 55.000 0.00 0.00 43.93 3.34
716 762 0.610509 TAGGCGTACCAACCGTACCA 60.611 55.000 0.00 0.00 43.93 3.25
717 763 1.218854 GGCGTACCAACCGTACCAT 59.781 57.895 0.00 0.00 43.93 3.55
718 764 0.459489 GGCGTACCAACCGTACCATA 59.541 55.000 0.00 0.00 43.93 2.74
719 765 1.536709 GGCGTACCAACCGTACCATAG 60.537 57.143 0.00 0.00 43.93 2.23
720 766 1.405105 GCGTACCAACCGTACCATAGA 59.595 52.381 0.00 0.00 43.93 1.98
721 767 2.542411 GCGTACCAACCGTACCATAGAG 60.542 54.545 0.00 0.00 43.93 2.43
722 768 2.684881 CGTACCAACCGTACCATAGAGT 59.315 50.000 0.00 0.00 43.93 3.24
723 769 3.488047 CGTACCAACCGTACCATAGAGTG 60.488 52.174 0.00 0.00 43.93 3.51
724 770 2.532843 ACCAACCGTACCATAGAGTGT 58.467 47.619 0.00 0.00 0.00 3.55
725 771 2.232941 ACCAACCGTACCATAGAGTGTG 59.767 50.000 0.00 0.00 0.00 3.82
726 772 2.418197 CCAACCGTACCATAGAGTGTGG 60.418 54.545 0.00 0.00 42.55 4.17
727 773 0.822164 ACCGTACCATAGAGTGTGGC 59.178 55.000 0.00 0.00 40.49 5.01
728 774 1.112113 CCGTACCATAGAGTGTGGCT 58.888 55.000 0.00 0.00 40.49 4.75
729 775 2.304092 CCGTACCATAGAGTGTGGCTA 58.696 52.381 0.00 0.00 40.49 3.93
730 776 2.034305 CCGTACCATAGAGTGTGGCTAC 59.966 54.545 0.00 0.00 40.49 3.58
731 777 2.686405 CGTACCATAGAGTGTGGCTACA 59.314 50.000 0.00 0.00 40.49 2.74
746 1024 1.209504 GCTACACAGAAGGCCCACATA 59.790 52.381 0.00 0.00 0.00 2.29
760 1038 4.565652 GGCCCACATATACCGATGAATTCT 60.566 45.833 7.05 0.00 0.00 2.40
778 1056 3.462483 TCTTGCCTCGTGACTGTAAAA 57.538 42.857 0.00 0.00 0.00 1.52
816 1097 4.739587 AAACTCTTTTACCCCGCAAAAA 57.260 36.364 0.00 0.00 0.00 1.94
1072 1369 2.315176 CCACCTCTATCCAGTCCAGAG 58.685 57.143 0.00 0.00 36.40 3.35
1180 1502 4.570663 GAGCCACCCGATCCGACG 62.571 72.222 0.00 0.00 0.00 5.12
1219 1541 0.540923 GCTGCCTCAAGATCCTCTGT 59.459 55.000 0.00 0.00 0.00 3.41
1350 1672 1.680522 CTCCCAGCCGCAGTGTATCT 61.681 60.000 0.00 0.00 0.00 1.98
1361 1683 1.995484 CAGTGTATCTGTGCTGTTCCG 59.005 52.381 0.00 0.00 39.17 4.30
1527 1858 1.763546 AAACGGCCACCAATTTGGGG 61.764 55.000 19.39 15.46 43.37 4.96
1545 1876 4.191015 GATTCCCCCGGTGCTCCC 62.191 72.222 0.00 0.00 0.00 4.30
1592 1923 3.313690 GTGGGCGTGAAATTTCGATTTT 58.686 40.909 13.34 0.00 0.00 1.82
1632 1963 1.601171 CTCCAAGTCCCCTCAGCAG 59.399 63.158 0.00 0.00 0.00 4.24
1690 2025 6.747414 ACAAATTCCCTCTTTTTAAGCCTT 57.253 33.333 0.00 0.00 0.00 4.35
1691 2026 7.136822 ACAAATTCCCTCTTTTTAAGCCTTT 57.863 32.000 0.00 0.00 0.00 3.11
1801 2136 2.263021 GCGCCATGATGCCATGCTA 61.263 57.895 0.00 0.00 46.73 3.49
1803 2138 1.577922 GCCATGATGCCATGCTACG 59.422 57.895 0.00 0.00 46.73 3.51
1804 2139 1.577922 CCATGATGCCATGCTACGC 59.422 57.895 0.00 0.00 46.73 4.42
1805 2140 1.205820 CATGATGCCATGCTACGCG 59.794 57.895 3.53 3.53 43.06 6.01
1806 2141 2.610694 ATGATGCCATGCTACGCGC 61.611 57.895 5.73 0.00 39.77 6.86
1892 2228 3.325870 GTTGGATTTTGCTAACCCTTGC 58.674 45.455 0.00 0.00 0.00 4.01
1893 2229 1.899142 TGGATTTTGCTAACCCTTGCC 59.101 47.619 0.00 0.00 0.00 4.52
2040 2384 4.222847 GTCGGCCGGTGAGGATCC 62.223 72.222 27.83 2.48 45.00 3.36
2073 2420 3.119637 CCACGTGCTATTCCGGAAAATTT 60.120 43.478 23.08 7.17 0.00 1.82
2076 2423 3.186909 GTGCTATTCCGGAAAATTTGCC 58.813 45.455 23.08 4.93 0.00 4.52
2196 2543 6.183360 TGCGATAATTTGTTTTTCCCCCTATC 60.183 38.462 0.00 0.00 0.00 2.08
2209 2556 7.896383 TTTCCCCCTATCTACAAATTTCATG 57.104 36.000 0.00 0.00 0.00 3.07
2398 2745 5.728471 TCTGATGGTGACTGAAGAAGAATC 58.272 41.667 0.00 0.00 0.00 2.52
2490 2838 3.120165 GCTTTGAAGGTTCACTCGATTCC 60.120 47.826 0.00 0.00 36.83 3.01
2576 2924 5.190726 AGGATTCTGTTTCCCTCTTCCTTAG 59.809 44.000 0.00 0.00 33.45 2.18
2585 2934 7.403231 TGTTTCCCTCTTCCTTAGATCAAGTAT 59.597 37.037 0.00 0.00 31.77 2.12
2586 2935 7.604657 TTCCCTCTTCCTTAGATCAAGTATC 57.395 40.000 0.00 0.00 31.77 2.24
2589 2938 6.014669 CCCTCTTCCTTAGATCAAGTATCCAG 60.015 46.154 0.00 0.00 34.90 3.86
2590 2939 6.553100 CCTCTTCCTTAGATCAAGTATCCAGT 59.447 42.308 0.00 0.00 34.90 4.00
2900 3249 2.742053 CGAAGAGAAGCCCGATGAAAAA 59.258 45.455 0.00 0.00 0.00 1.94
2945 3294 4.521146 AGCCAGTTGACCAGATAATTGAG 58.479 43.478 0.00 0.00 0.00 3.02
2983 3332 5.059833 GCCAGATGAAAAGATAACCGAGAT 58.940 41.667 0.00 0.00 0.00 2.75
2986 3335 5.757320 CAGATGAAAAGATAACCGAGATGCT 59.243 40.000 0.00 0.00 0.00 3.79
3128 3513 1.484240 CCAGACCCTGAGGAAGATCAC 59.516 57.143 0.00 0.00 36.73 3.06
3290 3675 1.328986 GCAAGGCAAGAGCTATCGAAC 59.671 52.381 0.00 0.00 41.70 3.95
3464 3849 9.774742 CAGGTGAGTAAAGCATTCTTATTTAAC 57.225 33.333 0.00 0.00 31.02 2.01
3505 3895 7.592938 ACATATTTATTATCACCCACATTGCG 58.407 34.615 0.00 0.00 0.00 4.85
3527 3917 1.002069 TGGGAGGAAACATCATGGCT 58.998 50.000 0.00 0.00 0.00 4.75
3545 3935 6.599244 TCATGGCTTCAACTTTACTCAATAGG 59.401 38.462 0.00 0.00 0.00 2.57
4096 4486 0.550914 AACCACTGAAGGCCACTTGA 59.449 50.000 5.01 0.00 36.97 3.02
4158 4548 2.485124 GGAAGAGGATGCTCACCATGAG 60.485 54.545 17.24 1.29 46.90 2.90
4172 4562 3.891366 CACCATGAGGAAAAGGTTGTTCT 59.109 43.478 0.00 0.00 38.69 3.01
4175 4565 5.069119 ACCATGAGGAAAAGGTTGTTCTTTC 59.931 40.000 0.00 0.00 35.75 2.62
4179 4569 3.883489 AGGAAAAGGTTGTTCTTTCGGAG 59.117 43.478 0.00 0.00 36.09 4.63
4294 4684 6.012113 AGGTCATTTGATTTGAGTGGATTGA 58.988 36.000 0.00 0.00 0.00 2.57
4362 4752 2.575279 AGATGATCCTGCACCAGAGTTT 59.425 45.455 0.00 0.00 32.44 2.66
4398 4788 2.224042 TGACGATGCTGAACAGTTGACT 60.224 45.455 0.00 0.00 0.00 3.41
4434 4824 4.973168 AGAATGTTGTGGAGCAGTCTTTA 58.027 39.130 0.00 0.00 36.79 1.85
4454 4856 6.781014 TCTTTAGACTTCTCTACCCAAACTGA 59.219 38.462 0.00 0.00 0.00 3.41
4495 4897 4.221482 GCCCTGTTCCTGAAAAATCTGAAT 59.779 41.667 0.00 0.00 0.00 2.57
4510 4912 3.041211 TCTGAATACCCCAGTGAGGATG 58.959 50.000 0.00 0.00 41.22 3.51
4511 4913 2.774234 CTGAATACCCCAGTGAGGATGT 59.226 50.000 0.00 0.00 41.22 3.06
4541 4943 5.922053 TGCATATAATCTTGAGCAGTCACT 58.078 37.500 0.00 0.00 30.10 3.41
4686 5088 1.666888 CCAAGCAAATCGAAGGTGCAC 60.667 52.381 8.80 8.80 40.83 4.57
4700 5102 2.110213 GCACACTCCCCGTTCACA 59.890 61.111 0.00 0.00 0.00 3.58
4738 5140 6.183360 ACCCAAGCAAAATATTGAAACAGTCA 60.183 34.615 0.00 0.00 38.94 3.41
4739 5141 6.875195 CCCAAGCAAAATATTGAAACAGTCAT 59.125 34.615 0.00 0.00 38.94 3.06
4743 5145 7.547227 AGCAAAATATTGAAACAGTCATACCC 58.453 34.615 0.00 0.00 38.94 3.69
5250 5652 1.093159 CTCATGCAAGCAGAAGGTCC 58.907 55.000 0.00 0.00 0.00 4.46
5280 5682 0.455633 CAAGCAGCAATTCAGTCGGC 60.456 55.000 0.00 0.00 0.00 5.54
5343 5745 1.935799 AGAGAGAGAGCTCAGGCAAA 58.064 50.000 17.77 0.00 43.81 3.68
5346 5748 1.550072 AGAGAGAGCTCAGGCAAAGTC 59.450 52.381 17.77 1.56 43.81 3.01
5361 5763 2.549754 CAAAGTCGCCAAGTCTGACAAT 59.450 45.455 10.88 0.00 35.09 2.71
5475 5877 3.165071 CCCAAAGTTAAGCCCAGATGTT 58.835 45.455 0.00 0.00 0.00 2.71
5484 5886 3.446442 AGCCCAGATGTTCAAGACAAT 57.554 42.857 0.00 0.00 42.62 2.71
5610 6012 1.197721 GTTGCTGTTCCTCACAATCCG 59.802 52.381 0.00 0.00 33.87 4.18
5737 6139 7.262772 ACATACGCACAGTAATGTAATGTAGT 58.737 34.615 0.00 0.00 39.04 2.73
5738 6140 8.407832 ACATACGCACAGTAATGTAATGTAGTA 58.592 33.333 0.00 6.11 39.04 1.82
5739 6141 8.688184 CATACGCACAGTAATGTAATGTAGTAC 58.312 37.037 0.00 0.00 39.04 2.73
5740 6142 6.860080 ACGCACAGTAATGTAATGTAGTACT 58.140 36.000 0.00 0.00 34.93 2.73
5741 6143 6.971184 ACGCACAGTAATGTAATGTAGTACTC 59.029 38.462 0.00 0.00 34.93 2.59
5742 6144 6.417044 CGCACAGTAATGTAATGTAGTACTCC 59.583 42.308 0.00 0.00 34.93 3.85
5743 6145 6.700520 GCACAGTAATGTAATGTAGTACTCCC 59.299 42.308 0.00 0.00 34.93 4.30
5744 6146 7.417570 GCACAGTAATGTAATGTAGTACTCCCT 60.418 40.741 0.00 0.00 34.93 4.20
5745 6147 8.136165 CACAGTAATGTAATGTAGTACTCCCTC 58.864 40.741 0.00 0.00 34.93 4.30
5746 6148 7.287235 ACAGTAATGTAATGTAGTACTCCCTCC 59.713 40.741 0.00 0.00 34.93 4.30
5747 6149 5.786264 AATGTAATGTAGTACTCCCTCCG 57.214 43.478 0.00 0.00 0.00 4.63
5748 6150 4.240881 TGTAATGTAGTACTCCCTCCGT 57.759 45.455 0.00 0.00 0.00 4.69
5749 6151 4.603131 TGTAATGTAGTACTCCCTCCGTT 58.397 43.478 0.00 0.00 0.00 4.44
5750 6152 4.641989 TGTAATGTAGTACTCCCTCCGTTC 59.358 45.833 0.00 0.00 0.00 3.95
5751 6153 2.134789 TGTAGTACTCCCTCCGTTCC 57.865 55.000 0.00 0.00 0.00 3.62
5752 6154 1.341383 TGTAGTACTCCCTCCGTTCCC 60.341 57.143 0.00 0.00 0.00 3.97
5753 6155 1.002069 TAGTACTCCCTCCGTTCCCA 58.998 55.000 0.00 0.00 0.00 4.37
5754 6156 0.115745 AGTACTCCCTCCGTTCCCAA 59.884 55.000 0.00 0.00 0.00 4.12
5755 6157 0.978907 GTACTCCCTCCGTTCCCAAA 59.021 55.000 0.00 0.00 0.00 3.28
5756 6158 1.558294 GTACTCCCTCCGTTCCCAAAT 59.442 52.381 0.00 0.00 0.00 2.32
5757 6159 1.961133 ACTCCCTCCGTTCCCAAATA 58.039 50.000 0.00 0.00 0.00 1.40
5758 6160 2.488836 ACTCCCTCCGTTCCCAAATAT 58.511 47.619 0.00 0.00 0.00 1.28
5759 6161 2.850568 ACTCCCTCCGTTCCCAAATATT 59.149 45.455 0.00 0.00 0.00 1.28
5760 6162 3.268595 ACTCCCTCCGTTCCCAAATATTT 59.731 43.478 0.00 0.00 0.00 1.40
5761 6163 3.626930 TCCCTCCGTTCCCAAATATTTG 58.373 45.455 19.40 19.40 37.90 2.32
5762 6164 3.010808 TCCCTCCGTTCCCAAATATTTGT 59.989 43.478 23.24 0.00 36.45 2.83
5763 6165 3.380320 CCCTCCGTTCCCAAATATTTGTC 59.620 47.826 23.24 11.68 36.45 3.18
5764 6166 4.270008 CCTCCGTTCCCAAATATTTGTCT 58.730 43.478 23.24 0.00 36.45 3.41
5765 6167 4.705023 CCTCCGTTCCCAAATATTTGTCTT 59.295 41.667 23.24 0.00 36.45 3.01
5766 6168 5.185056 CCTCCGTTCCCAAATATTTGTCTTT 59.815 40.000 23.24 0.00 36.45 2.52
5767 6169 6.262193 TCCGTTCCCAAATATTTGTCTTTC 57.738 37.500 23.24 10.84 36.45 2.62
5768 6170 6.007703 TCCGTTCCCAAATATTTGTCTTTCT 58.992 36.000 23.24 0.00 36.45 2.52
5769 6171 7.169591 TCCGTTCCCAAATATTTGTCTTTCTA 58.830 34.615 23.24 5.03 36.45 2.10
5770 6172 7.666388 TCCGTTCCCAAATATTTGTCTTTCTAA 59.334 33.333 23.24 7.04 36.45 2.10
5771 6173 7.968405 CCGTTCCCAAATATTTGTCTTTCTAAG 59.032 37.037 23.24 7.62 36.45 2.18
5772 6174 7.484959 CGTTCCCAAATATTTGTCTTTCTAAGC 59.515 37.037 23.24 5.12 36.45 3.09
5773 6175 8.303876 GTTCCCAAATATTTGTCTTTCTAAGCA 58.696 33.333 23.24 0.00 36.45 3.91
5774 6176 8.593945 TCCCAAATATTTGTCTTTCTAAGCAT 57.406 30.769 23.24 0.00 36.45 3.79
5775 6177 9.034800 TCCCAAATATTTGTCTTTCTAAGCATT 57.965 29.630 23.24 0.00 36.45 3.56
5776 6178 9.657419 CCCAAATATTTGTCTTTCTAAGCATTT 57.343 29.630 23.24 0.00 36.45 2.32
5783 6185 8.592105 TTTGTCTTTCTAAGCATTTCAAATGG 57.408 30.769 12.14 0.00 0.00 3.16
5784 6186 7.523293 TGTCTTTCTAAGCATTTCAAATGGA 57.477 32.000 12.14 0.00 0.00 3.41
5785 6187 7.370383 TGTCTTTCTAAGCATTTCAAATGGAC 58.630 34.615 12.14 8.23 0.00 4.02
5786 6188 7.014134 TGTCTTTCTAAGCATTTCAAATGGACA 59.986 33.333 12.14 10.47 0.00 4.02
5787 6189 7.327032 GTCTTTCTAAGCATTTCAAATGGACAC 59.673 37.037 12.14 0.00 0.00 3.67
5788 6190 6.647334 TTCTAAGCATTTCAAATGGACACA 57.353 33.333 12.14 0.00 0.00 3.72
5789 6191 6.647334 TCTAAGCATTTCAAATGGACACAA 57.353 33.333 12.14 0.00 0.00 3.33
5790 6192 6.446318 TCTAAGCATTTCAAATGGACACAAC 58.554 36.000 12.14 0.00 0.00 3.32
5791 6193 4.669206 AGCATTTCAAATGGACACAACA 57.331 36.364 12.14 0.00 0.00 3.33
5792 6194 5.217978 AGCATTTCAAATGGACACAACAT 57.782 34.783 12.14 0.00 0.00 2.71
5793 6195 6.343716 AGCATTTCAAATGGACACAACATA 57.656 33.333 12.14 0.00 0.00 2.29
5794 6196 6.158598 AGCATTTCAAATGGACACAACATAC 58.841 36.000 12.14 0.00 0.00 2.39
5795 6197 5.060816 GCATTTCAAATGGACACAACATACG 59.939 40.000 12.14 0.00 0.00 3.06
5796 6198 4.757799 TTCAAATGGACACAACATACGG 57.242 40.909 0.00 0.00 0.00 4.02
5797 6199 4.009370 TCAAATGGACACAACATACGGA 57.991 40.909 0.00 0.00 0.00 4.69
5798 6200 4.584874 TCAAATGGACACAACATACGGAT 58.415 39.130 0.00 0.00 0.00 4.18
5799 6201 4.394610 TCAAATGGACACAACATACGGATG 59.605 41.667 5.94 5.94 39.16 3.51
5801 6203 4.746535 ATGGACACAACATACGGATGTA 57.253 40.909 15.10 0.00 45.93 2.29
5802 6204 4.746535 TGGACACAACATACGGATGTAT 57.253 40.909 15.10 2.23 45.93 2.29
5817 6219 6.982852 ACGGATGTATGTAGACTTATCTTGG 58.017 40.000 0.00 0.00 36.29 3.61
5818 6220 6.776116 ACGGATGTATGTAGACTTATCTTGGA 59.224 38.462 0.00 0.00 36.29 3.53
5819 6221 7.040340 ACGGATGTATGTAGACTTATCTTGGAG 60.040 40.741 0.00 0.00 36.29 3.86
5820 6222 7.040340 CGGATGTATGTAGACTTATCTTGGAGT 60.040 40.741 0.00 0.00 36.29 3.85
5821 6223 8.085296 GGATGTATGTAGACTTATCTTGGAGTG 58.915 40.741 0.00 0.00 36.29 3.51
5822 6224 7.956328 TGTATGTAGACTTATCTTGGAGTGT 57.044 36.000 0.00 0.00 36.29 3.55
5823 6225 9.642343 ATGTATGTAGACTTATCTTGGAGTGTA 57.358 33.333 0.00 0.00 36.29 2.90
5824 6226 9.121658 TGTATGTAGACTTATCTTGGAGTGTAG 57.878 37.037 0.00 0.00 36.29 2.74
5825 6227 9.339850 GTATGTAGACTTATCTTGGAGTGTAGA 57.660 37.037 0.00 0.00 36.29 2.59
5827 6229 8.824756 TGTAGACTTATCTTGGAGTGTAGATT 57.175 34.615 0.00 0.00 36.29 2.40
5828 6230 8.904834 TGTAGACTTATCTTGGAGTGTAGATTC 58.095 37.037 0.00 0.00 36.29 2.52
5829 6231 7.962995 AGACTTATCTTGGAGTGTAGATTCA 57.037 36.000 0.00 0.00 33.38 2.57
5830 6232 8.546083 AGACTTATCTTGGAGTGTAGATTCAT 57.454 34.615 0.00 0.00 33.38 2.57
5831 6233 8.986991 AGACTTATCTTGGAGTGTAGATTCATT 58.013 33.333 0.00 0.00 33.38 2.57
5832 6234 9.255304 GACTTATCTTGGAGTGTAGATTCATTC 57.745 37.037 0.00 0.00 33.38 2.67
5833 6235 8.762645 ACTTATCTTGGAGTGTAGATTCATTCA 58.237 33.333 0.00 0.00 33.38 2.57
5834 6236 9.775854 CTTATCTTGGAGTGTAGATTCATTCAT 57.224 33.333 0.00 0.00 33.38 2.57
5837 6239 8.868522 TCTTGGAGTGTAGATTCATTCATTTT 57.131 30.769 0.00 0.00 0.00 1.82
5838 6240 8.733458 TCTTGGAGTGTAGATTCATTCATTTTG 58.267 33.333 0.00 0.00 0.00 2.44
5839 6241 6.855836 TGGAGTGTAGATTCATTCATTTTGC 58.144 36.000 0.00 0.00 0.00 3.68
5840 6242 6.660521 TGGAGTGTAGATTCATTCATTTTGCT 59.339 34.615 0.00 0.00 0.00 3.91
5841 6243 7.148188 TGGAGTGTAGATTCATTCATTTTGCTC 60.148 37.037 0.00 0.00 0.00 4.26
5842 6244 7.093322 AGTGTAGATTCATTCATTTTGCTCC 57.907 36.000 0.00 0.00 0.00 4.70
5843 6245 5.967674 GTGTAGATTCATTCATTTTGCTCCG 59.032 40.000 0.00 0.00 0.00 4.63
5844 6246 5.647658 TGTAGATTCATTCATTTTGCTCCGT 59.352 36.000 0.00 0.00 0.00 4.69
5845 6247 6.821160 TGTAGATTCATTCATTTTGCTCCGTA 59.179 34.615 0.00 0.00 0.00 4.02
5846 6248 6.949352 AGATTCATTCATTTTGCTCCGTAT 57.051 33.333 0.00 0.00 0.00 3.06
5847 6249 6.732154 AGATTCATTCATTTTGCTCCGTATG 58.268 36.000 0.00 0.00 0.00 2.39
5848 6250 5.895636 TTCATTCATTTTGCTCCGTATGT 57.104 34.783 0.00 0.00 0.00 2.29
5849 6251 6.993786 TTCATTCATTTTGCTCCGTATGTA 57.006 33.333 0.00 0.00 0.00 2.29
5850 6252 6.603237 TCATTCATTTTGCTCCGTATGTAG 57.397 37.500 0.00 0.00 0.00 2.74
5851 6253 6.112734 TCATTCATTTTGCTCCGTATGTAGT 58.887 36.000 0.00 0.00 0.00 2.73
5852 6254 6.257849 TCATTCATTTTGCTCCGTATGTAGTC 59.742 38.462 0.00 0.00 0.00 2.59
5853 6255 5.079689 TCATTTTGCTCCGTATGTAGTCA 57.920 39.130 0.00 0.00 0.00 3.41
5854 6256 4.868171 TCATTTTGCTCCGTATGTAGTCAC 59.132 41.667 0.00 0.00 0.00 3.67
5855 6257 4.530710 TTTTGCTCCGTATGTAGTCACT 57.469 40.909 0.00 0.00 0.00 3.41
5856 6258 4.530710 TTTGCTCCGTATGTAGTCACTT 57.469 40.909 0.00 0.00 0.00 3.16
5857 6259 3.503827 TGCTCCGTATGTAGTCACTTG 57.496 47.619 0.00 0.00 0.00 3.16
5858 6260 2.823747 TGCTCCGTATGTAGTCACTTGT 59.176 45.455 0.00 0.00 0.00 3.16
5859 6261 3.257375 TGCTCCGTATGTAGTCACTTGTT 59.743 43.478 0.00 0.00 0.00 2.83
5860 6262 3.612860 GCTCCGTATGTAGTCACTTGTTG 59.387 47.826 0.00 0.00 0.00 3.33
5861 6263 4.617530 GCTCCGTATGTAGTCACTTGTTGA 60.618 45.833 0.00 0.00 0.00 3.18
5862 6264 5.456548 TCCGTATGTAGTCACTTGTTGAA 57.543 39.130 0.00 0.00 35.39 2.69
5863 6265 5.845103 TCCGTATGTAGTCACTTGTTGAAA 58.155 37.500 0.00 0.00 35.39 2.69
5864 6266 6.460781 TCCGTATGTAGTCACTTGTTGAAAT 58.539 36.000 0.00 0.00 35.39 2.17
5865 6267 6.588756 TCCGTATGTAGTCACTTGTTGAAATC 59.411 38.462 0.00 0.00 35.39 2.17
5866 6268 6.590292 CCGTATGTAGTCACTTGTTGAAATCT 59.410 38.462 0.00 0.00 35.39 2.40
5867 6269 7.201444 CCGTATGTAGTCACTTGTTGAAATCTC 60.201 40.741 0.00 0.00 35.39 2.75
5868 6270 7.542477 CGTATGTAGTCACTTGTTGAAATCTCT 59.458 37.037 0.00 0.00 35.39 3.10
5869 6271 9.856488 GTATGTAGTCACTTGTTGAAATCTCTA 57.144 33.333 0.00 0.00 35.39 2.43
5871 6273 9.778741 ATGTAGTCACTTGTTGAAATCTCTAAA 57.221 29.630 0.00 0.00 35.39 1.85
5872 6274 9.607988 TGTAGTCACTTGTTGAAATCTCTAAAA 57.392 29.630 0.00 0.00 35.39 1.52
5875 6277 9.396022 AGTCACTTGTTGAAATCTCTAAAAAGA 57.604 29.630 0.00 0.00 35.39 2.52
5876 6278 9.439537 GTCACTTGTTGAAATCTCTAAAAAGAC 57.560 33.333 0.00 0.00 35.39 3.01
5877 6279 9.173021 TCACTTGTTGAAATCTCTAAAAAGACA 57.827 29.630 0.00 0.00 0.00 3.41
5878 6280 9.787532 CACTTGTTGAAATCTCTAAAAAGACAA 57.212 29.630 0.00 0.00 0.00 3.18
5891 6293 9.341899 CTCTAAAAAGACAAATATTTGGGAACG 57.658 33.333 27.43 11.14 42.34 3.95
5892 6294 8.301002 TCTAAAAAGACAAATATTTGGGAACGG 58.699 33.333 27.43 12.94 42.34 4.44
5893 6295 6.658188 AAAAGACAAATATTTGGGAACGGA 57.342 33.333 27.43 0.00 42.34 4.69
5894 6296 5.897377 AAGACAAATATTTGGGAACGGAG 57.103 39.130 27.43 4.34 42.34 4.63
5895 6297 4.270008 AGACAAATATTTGGGAACGGAGG 58.730 43.478 27.43 3.68 42.34 4.30
5896 6298 3.361786 ACAAATATTTGGGAACGGAGGG 58.638 45.455 27.43 3.22 42.34 4.30
5897 6299 3.010808 ACAAATATTTGGGAACGGAGGGA 59.989 43.478 27.43 0.00 42.34 4.20
5898 6300 3.577805 AATATTTGGGAACGGAGGGAG 57.422 47.619 0.00 0.00 0.00 4.30
5899 6301 1.961133 TATTTGGGAACGGAGGGAGT 58.039 50.000 0.00 0.00 0.00 3.85
5909 6311 4.518590 GGAACGGAGGGAGTAGTAGTTATC 59.481 50.000 0.00 0.00 0.00 1.75
5942 6344 6.028987 GTGTACGTCTGTCTTAAGGATCTTC 58.971 44.000 1.85 0.00 0.00 2.87
6006 6408 0.873312 CATCGACGAGGTGCCATCAG 60.873 60.000 3.01 0.00 0.00 2.90
6028 6430 5.479724 CAGATATCTAGAAGCACTCATCCCA 59.520 44.000 4.54 0.00 0.00 4.37
6221 6625 4.939052 ATCCTACTTGACTTGTATCGGG 57.061 45.455 0.00 0.00 0.00 5.14
6277 6681 9.836864 TGATGATCTGTTATAGTATTTGTTGCT 57.163 29.630 0.00 0.00 0.00 3.91
6283 6687 7.663905 TCTGTTATAGTATTTGTTGCTGGTTGT 59.336 33.333 0.00 0.00 0.00 3.32
6285 6689 3.896648 AGTATTTGTTGCTGGTTGTCG 57.103 42.857 0.00 0.00 0.00 4.35
6294 6698 0.671781 GCTGGTTGTCGCTGATGTCT 60.672 55.000 0.00 0.00 0.00 3.41
6314 6718 5.008911 TGTCTGAATGAAGTTCATGTTGGTG 59.991 40.000 18.94 7.06 45.36 4.17
6323 6727 3.569701 AGTTCATGTTGGTGTGGATCAAC 59.430 43.478 0.00 0.00 42.72 3.18
6326 6730 3.820467 TCATGTTGGTGTGGATCAACTTC 59.180 43.478 1.02 0.00 42.82 3.01
6499 6904 0.625849 CCCTAACCAAGCCTCCACAT 59.374 55.000 0.00 0.00 0.00 3.21
6501 6906 1.561542 CCTAACCAAGCCTCCACATCT 59.438 52.381 0.00 0.00 0.00 2.90
6502 6907 2.025887 CCTAACCAAGCCTCCACATCTT 60.026 50.000 0.00 0.00 0.00 2.40
6665 7070 3.885297 CCTTTGCTTCCATATCGTCCAAT 59.115 43.478 0.00 0.00 0.00 3.16
6818 7223 2.186160 CAGCGGAACCACACTTGCA 61.186 57.895 0.00 0.00 0.00 4.08
6859 7264 3.426159 GCAAAATGTGGTCCACTGTATCG 60.426 47.826 22.56 8.27 35.11 2.92
6920 7325 0.461548 CAATCCGTGCCTAGCTCTCA 59.538 55.000 0.00 0.00 0.00 3.27
7071 7476 2.099756 CAGATGATGCCGTGTAGACTCA 59.900 50.000 0.00 0.00 0.00 3.41
7108 7513 2.039624 ATGGGGCAGTCCTCGACT 59.960 61.111 0.00 0.00 44.44 4.18
7158 7563 0.404040 TCCCAAAGGCCGATGAACTT 59.596 50.000 11.88 0.00 0.00 2.66
7243 7648 4.237724 CATCTCGCACAAGTCTCTTGTTA 58.762 43.478 11.68 1.98 0.00 2.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.249741 GGGCATGTCCGCTTACGTAT 60.250 55.000 0.00 0.00 37.70 3.06
2 3 2.125269 GGGCATGTCCGCTTACGT 60.125 61.111 0.00 0.00 37.70 3.57
6 7 3.064324 GCTTGGGCATGTCCGCTT 61.064 61.111 12.67 0.00 38.54 4.68
11 12 1.444895 CAAAGCGCTTGGGCATGTC 60.445 57.895 25.80 0.00 38.60 3.06
12 13 2.652530 CAAAGCGCTTGGGCATGT 59.347 55.556 25.80 2.25 38.60 3.21
13 14 2.812178 GCAAAGCGCTTGGGCATG 60.812 61.111 30.83 22.98 38.60 4.06
24 25 1.166531 CCCCTATACAGCCGCAAAGC 61.167 60.000 0.00 0.00 0.00 3.51
25 26 0.535102 CCCCCTATACAGCCGCAAAG 60.535 60.000 0.00 0.00 0.00 2.77
33 34 1.064825 AAATCCGGCCCCCTATACAG 58.935 55.000 0.00 0.00 0.00 2.74
34 35 0.768622 CAAATCCGGCCCCCTATACA 59.231 55.000 0.00 0.00 0.00 2.29
35 36 0.608308 GCAAATCCGGCCCCCTATAC 60.608 60.000 0.00 0.00 0.00 1.47
45 46 2.104729 CGGCATTGGCAAATCCGG 59.895 61.111 26.01 13.59 43.71 5.14
46 47 2.104729 CCGGCATTGGCAAATCCG 59.895 61.111 26.47 26.47 43.71 4.18
58 59 4.932789 GAGCATCTACAACCGGCA 57.067 55.556 0.00 0.00 0.00 5.69
85 86 2.642171 TAGAGGGGCCATATGTAGGG 57.358 55.000 4.39 0.00 0.00 3.53
102 103 4.187124 AGGGGGAATCTAAATGGGGATAG 58.813 47.826 0.00 0.00 0.00 2.08
107 108 1.429299 GGGAGGGGGAATCTAAATGGG 59.571 57.143 0.00 0.00 0.00 4.00
124 125 3.204382 GGGGAAATCAAATCTGTAGGGGA 59.796 47.826 0.00 0.00 0.00 4.81
144 145 2.351932 CGGTTAATGTTGTTTTCGGGGG 60.352 50.000 0.00 0.00 0.00 5.40
145 146 2.293955 ACGGTTAATGTTGTTTTCGGGG 59.706 45.455 0.00 0.00 0.00 5.73
146 147 3.251487 AGACGGTTAATGTTGTTTTCGGG 59.749 43.478 0.00 0.00 0.00 5.14
147 148 4.477302 AGACGGTTAATGTTGTTTTCGG 57.523 40.909 0.00 0.00 0.00 4.30
148 149 6.085849 GCTTAAGACGGTTAATGTTGTTTTCG 59.914 38.462 6.67 0.00 0.00 3.46
149 150 6.361481 GGCTTAAGACGGTTAATGTTGTTTTC 59.639 38.462 6.67 0.00 0.00 2.29
155 156 7.148137 CCTTATTGGCTTAAGACGGTTAATGTT 60.148 37.037 6.67 0.00 32.02 2.71
174 175 3.817238 CCGACGAAACCAAACCTTATTG 58.183 45.455 0.00 0.00 0.00 1.90
175 176 2.227149 GCCGACGAAACCAAACCTTATT 59.773 45.455 0.00 0.00 0.00 1.40
190 191 5.356882 AATATGGATTTTATGTGCCGACG 57.643 39.130 0.00 0.00 0.00 5.12
193 194 6.977502 TGTGAAAATATGGATTTTATGTGCCG 59.022 34.615 0.00 0.00 43.76 5.69
291 293 6.961576 AGTAGACCTTCGATTAAGATCTTCG 58.038 40.000 12.24 10.17 33.94 3.79
293 295 9.575868 TGATAGTAGACCTTCGATTAAGATCTT 57.424 33.333 13.56 13.56 33.94 2.40
455 457 3.266510 AGCATGTATCTTCGCTTCCAA 57.733 42.857 0.00 0.00 0.00 3.53
518 520 1.324383 TCTGACTGCACGGTAACTGA 58.676 50.000 0.00 0.00 0.00 3.41
525 527 2.376808 AGAAGAATCTGACTGCACGG 57.623 50.000 0.00 0.00 33.59 4.94
535 537 3.643320 TCGATATGGCCACAGAAGAATCT 59.357 43.478 8.16 0.00 35.88 2.40
553 555 9.334947 ACAAGTGATTCATCATTAAAGATCGAT 57.665 29.630 0.00 0.00 39.30 3.59
554 556 8.722480 ACAAGTGATTCATCATTAAAGATCGA 57.278 30.769 0.00 0.00 39.30 3.59
555 557 9.430838 GAACAAGTGATTCATCATTAAAGATCG 57.569 33.333 0.00 0.00 39.30 3.69
556 558 9.430838 CGAACAAGTGATTCATCATTAAAGATC 57.569 33.333 0.00 0.00 39.30 2.75
557 559 9.166173 TCGAACAAGTGATTCATCATTAAAGAT 57.834 29.630 0.00 0.00 39.30 2.40
558 560 8.443160 GTCGAACAAGTGATTCATCATTAAAGA 58.557 33.333 0.00 0.00 39.30 2.52
559 561 7.693951 GGTCGAACAAGTGATTCATCATTAAAG 59.306 37.037 0.00 0.00 39.30 1.85
560 562 7.174080 TGGTCGAACAAGTGATTCATCATTAAA 59.826 33.333 0.00 0.00 39.30 1.52
561 563 6.652900 TGGTCGAACAAGTGATTCATCATTAA 59.347 34.615 0.00 0.00 39.30 1.40
562 564 6.092122 GTGGTCGAACAAGTGATTCATCATTA 59.908 38.462 3.77 0.00 39.30 1.90
563 565 5.003160 TGGTCGAACAAGTGATTCATCATT 58.997 37.500 0.00 0.00 39.30 2.57
564 566 4.393062 GTGGTCGAACAAGTGATTCATCAT 59.607 41.667 3.77 0.00 39.30 2.45
565 567 3.745975 GTGGTCGAACAAGTGATTCATCA 59.254 43.478 3.77 0.00 0.00 3.07
566 568 3.125316 GGTGGTCGAACAAGTGATTCATC 59.875 47.826 3.77 0.00 0.00 2.92
567 569 3.074412 GGTGGTCGAACAAGTGATTCAT 58.926 45.455 3.77 0.00 0.00 2.57
568 570 2.489971 GGTGGTCGAACAAGTGATTCA 58.510 47.619 3.77 0.00 0.00 2.57
569 571 1.459592 CGGTGGTCGAACAAGTGATTC 59.540 52.381 3.77 0.00 42.43 2.52
570 572 1.202604 ACGGTGGTCGAACAAGTGATT 60.203 47.619 3.77 0.00 42.43 2.57
571 573 0.391597 ACGGTGGTCGAACAAGTGAT 59.608 50.000 3.77 0.00 42.43 3.06
572 574 1.031235 TACGGTGGTCGAACAAGTGA 58.969 50.000 19.37 0.00 42.43 3.41
573 575 2.074547 ATACGGTGGTCGAACAAGTG 57.925 50.000 19.37 9.22 42.43 3.16
574 576 2.821969 ACTATACGGTGGTCGAACAAGT 59.178 45.455 3.77 11.58 42.43 3.16
575 577 3.498927 ACTATACGGTGGTCGAACAAG 57.501 47.619 3.77 5.00 42.43 3.16
576 578 3.940209 AACTATACGGTGGTCGAACAA 57.060 42.857 3.77 0.00 42.43 2.83
577 579 4.883585 AGATAACTATACGGTGGTCGAACA 59.116 41.667 0.00 0.00 42.43 3.18
578 580 5.429957 AGATAACTATACGGTGGTCGAAC 57.570 43.478 0.00 0.00 42.43 3.95
579 581 5.734220 GCAAGATAACTATACGGTGGTCGAA 60.734 44.000 0.00 0.00 42.43 3.71
580 582 4.261322 GCAAGATAACTATACGGTGGTCGA 60.261 45.833 0.00 0.00 42.43 4.20
581 583 3.979495 GCAAGATAACTATACGGTGGTCG 59.021 47.826 0.00 0.00 45.88 4.79
582 584 5.197682 AGCAAGATAACTATACGGTGGTC 57.802 43.478 0.00 0.00 0.00 4.02
583 585 5.609533 AAGCAAGATAACTATACGGTGGT 57.390 39.130 0.00 0.00 0.00 4.16
584 586 5.236478 CCAAAGCAAGATAACTATACGGTGG 59.764 44.000 0.00 0.00 0.00 4.61
585 587 6.046593 TCCAAAGCAAGATAACTATACGGTG 58.953 40.000 0.00 0.00 0.00 4.94
586 588 6.097839 TCTCCAAAGCAAGATAACTATACGGT 59.902 38.462 0.00 0.00 0.00 4.83
587 589 6.513180 TCTCCAAAGCAAGATAACTATACGG 58.487 40.000 0.00 0.00 0.00 4.02
588 590 7.867909 TGATCTCCAAAGCAAGATAACTATACG 59.132 37.037 0.00 0.00 32.43 3.06
589 591 9.547753 TTGATCTCCAAAGCAAGATAACTATAC 57.452 33.333 0.00 0.00 32.43 1.47
591 593 9.638176 ATTTGATCTCCAAAGCAAGATAACTAT 57.362 29.630 0.00 0.00 46.72 2.12
593 595 7.951347 ATTTGATCTCCAAAGCAAGATAACT 57.049 32.000 0.00 0.00 46.72 2.24
631 677 6.702716 AACTTTTGTTGAATAAACTCCCGA 57.297 33.333 0.00 0.00 41.77 5.14
632 678 6.975772 TGAAACTTTTGTTGAATAAACTCCCG 59.024 34.615 0.00 0.00 42.67 5.14
633 679 8.887036 ATGAAACTTTTGTTGAATAAACTCCC 57.113 30.769 0.00 0.00 42.67 4.30
634 680 9.528018 TGATGAAACTTTTGTTGAATAAACTCC 57.472 29.630 0.00 0.00 42.67 3.85
636 682 9.868277 TGTGATGAAACTTTTGTTGAATAAACT 57.132 25.926 0.00 0.00 42.67 2.66
638 684 9.868277 ACTGTGATGAAACTTTTGTTGAATAAA 57.132 25.926 0.00 0.00 42.67 1.40
639 685 9.515020 GACTGTGATGAAACTTTTGTTGAATAA 57.485 29.630 0.00 0.00 42.67 1.40
640 686 8.681806 TGACTGTGATGAAACTTTTGTTGAATA 58.318 29.630 0.00 0.00 42.67 1.75
641 687 7.546358 TGACTGTGATGAAACTTTTGTTGAAT 58.454 30.769 0.00 0.00 42.67 2.57
642 688 6.918626 TGACTGTGATGAAACTTTTGTTGAA 58.081 32.000 0.00 0.00 42.67 2.69
643 689 6.374053 TCTGACTGTGATGAAACTTTTGTTGA 59.626 34.615 0.00 0.00 42.67 3.18
644 690 6.554419 TCTGACTGTGATGAAACTTTTGTTG 58.446 36.000 0.00 0.00 42.67 3.33
645 691 6.757897 TCTGACTGTGATGAAACTTTTGTT 57.242 33.333 0.00 0.00 45.94 2.83
646 692 6.150976 TGTTCTGACTGTGATGAAACTTTTGT 59.849 34.615 0.00 0.00 0.00 2.83
647 693 6.554419 TGTTCTGACTGTGATGAAACTTTTG 58.446 36.000 0.00 0.00 0.00 2.44
648 694 6.599244 TCTGTTCTGACTGTGATGAAACTTTT 59.401 34.615 0.00 0.00 0.00 2.27
649 695 6.115446 TCTGTTCTGACTGTGATGAAACTTT 58.885 36.000 0.00 0.00 0.00 2.66
650 696 5.674525 TCTGTTCTGACTGTGATGAAACTT 58.325 37.500 0.00 0.00 0.00 2.66
651 697 5.163364 ACTCTGTTCTGACTGTGATGAAACT 60.163 40.000 0.00 0.00 0.00 2.66
652 698 5.053145 ACTCTGTTCTGACTGTGATGAAAC 58.947 41.667 0.00 0.00 0.00 2.78
653 699 5.282055 ACTCTGTTCTGACTGTGATGAAA 57.718 39.130 0.00 0.00 0.00 2.69
654 700 4.944619 ACTCTGTTCTGACTGTGATGAA 57.055 40.909 0.00 0.00 0.00 2.57
655 701 5.316987 TCTACTCTGTTCTGACTGTGATGA 58.683 41.667 0.00 0.00 0.00 2.92
656 702 5.635417 TCTACTCTGTTCTGACTGTGATG 57.365 43.478 0.00 0.00 0.00 3.07
657 703 5.184864 CCTTCTACTCTGTTCTGACTGTGAT 59.815 44.000 0.00 0.00 0.00 3.06
658 704 4.520874 CCTTCTACTCTGTTCTGACTGTGA 59.479 45.833 0.00 0.00 0.00 3.58
659 705 4.279671 ACCTTCTACTCTGTTCTGACTGTG 59.720 45.833 0.00 0.00 0.00 3.66
660 706 4.475345 ACCTTCTACTCTGTTCTGACTGT 58.525 43.478 0.00 0.00 0.00 3.55
661 707 5.461032 AACCTTCTACTCTGTTCTGACTG 57.539 43.478 0.00 0.00 0.00 3.51
662 708 7.784470 AATAACCTTCTACTCTGTTCTGACT 57.216 36.000 0.00 0.00 0.00 3.41
663 709 7.332182 CCAAATAACCTTCTACTCTGTTCTGAC 59.668 40.741 0.00 0.00 0.00 3.51
664 710 7.386851 CCAAATAACCTTCTACTCTGTTCTGA 58.613 38.462 0.00 0.00 0.00 3.27
665 711 6.092807 GCCAAATAACCTTCTACTCTGTTCTG 59.907 42.308 0.00 0.00 0.00 3.02
666 712 6.174049 GCCAAATAACCTTCTACTCTGTTCT 58.826 40.000 0.00 0.00 0.00 3.01
667 713 5.938125 TGCCAAATAACCTTCTACTCTGTTC 59.062 40.000 0.00 0.00 0.00 3.18
668 714 5.876357 TGCCAAATAACCTTCTACTCTGTT 58.124 37.500 0.00 0.00 0.00 3.16
669 715 5.499004 TGCCAAATAACCTTCTACTCTGT 57.501 39.130 0.00 0.00 0.00 3.41
670 716 6.173339 TCTTGCCAAATAACCTTCTACTCTG 58.827 40.000 0.00 0.00 0.00 3.35
671 717 6.374417 TCTTGCCAAATAACCTTCTACTCT 57.626 37.500 0.00 0.00 0.00 3.24
672 718 8.910351 ATATCTTGCCAAATAACCTTCTACTC 57.090 34.615 0.00 0.00 0.00 2.59
674 720 9.220767 CCTATATCTTGCCAAATAACCTTCTAC 57.779 37.037 0.00 0.00 0.00 2.59
675 721 7.883311 GCCTATATCTTGCCAAATAACCTTCTA 59.117 37.037 0.00 0.00 0.00 2.10
676 722 6.717084 GCCTATATCTTGCCAAATAACCTTCT 59.283 38.462 0.00 0.00 0.00 2.85
677 723 6.348540 CGCCTATATCTTGCCAAATAACCTTC 60.349 42.308 0.00 0.00 0.00 3.46
678 724 5.473504 CGCCTATATCTTGCCAAATAACCTT 59.526 40.000 0.00 0.00 0.00 3.50
679 725 5.003804 CGCCTATATCTTGCCAAATAACCT 58.996 41.667 0.00 0.00 0.00 3.50
680 726 4.760204 ACGCCTATATCTTGCCAAATAACC 59.240 41.667 0.00 0.00 0.00 2.85
681 727 5.941948 ACGCCTATATCTTGCCAAATAAC 57.058 39.130 0.00 0.00 0.00 1.89
682 728 5.935789 GGTACGCCTATATCTTGCCAAATAA 59.064 40.000 0.00 0.00 0.00 1.40
683 729 5.012251 TGGTACGCCTATATCTTGCCAAATA 59.988 40.000 0.00 0.00 35.27 1.40
684 730 4.202419 TGGTACGCCTATATCTTGCCAAAT 60.202 41.667 0.00 0.00 35.27 2.32
685 731 3.134985 TGGTACGCCTATATCTTGCCAAA 59.865 43.478 0.00 0.00 35.27 3.28
686 732 2.701423 TGGTACGCCTATATCTTGCCAA 59.299 45.455 0.00 0.00 35.27 4.52
687 733 2.321719 TGGTACGCCTATATCTTGCCA 58.678 47.619 0.00 0.00 35.27 4.92
688 734 3.064931 GTTGGTACGCCTATATCTTGCC 58.935 50.000 0.00 0.00 35.27 4.52
689 735 3.064931 GGTTGGTACGCCTATATCTTGC 58.935 50.000 0.00 0.00 35.27 4.01
690 736 3.243636 ACGGTTGGTACGCCTATATCTTG 60.244 47.826 0.00 0.00 35.27 3.02
691 737 2.961062 ACGGTTGGTACGCCTATATCTT 59.039 45.455 0.00 0.00 35.27 2.40
692 738 2.590821 ACGGTTGGTACGCCTATATCT 58.409 47.619 0.00 0.00 35.27 1.98
693 739 3.826466 GTACGGTTGGTACGCCTATATC 58.174 50.000 0.00 0.00 41.91 1.63
694 740 3.923017 GTACGGTTGGTACGCCTATAT 57.077 47.619 0.00 0.00 41.91 0.86
703 749 3.444742 CACACTCTATGGTACGGTTGGTA 59.555 47.826 0.00 0.00 0.00 3.25
704 750 2.232941 CACACTCTATGGTACGGTTGGT 59.767 50.000 0.00 0.00 0.00 3.67
705 751 2.418197 CCACACTCTATGGTACGGTTGG 60.418 54.545 0.00 0.00 32.08 3.77
706 752 2.888594 CCACACTCTATGGTACGGTTG 58.111 52.381 0.00 0.00 32.08 3.77
707 753 1.206371 GCCACACTCTATGGTACGGTT 59.794 52.381 0.00 0.00 39.63 4.44
708 754 0.822164 GCCACACTCTATGGTACGGT 59.178 55.000 0.00 0.00 39.63 4.83
709 755 1.112113 AGCCACACTCTATGGTACGG 58.888 55.000 0.00 0.00 39.63 4.02
710 756 2.686405 TGTAGCCACACTCTATGGTACG 59.314 50.000 0.00 0.00 39.63 3.67
723 769 4.303257 GGCCTTCTGTGTAGCCAC 57.697 61.111 0.00 0.00 45.07 5.01
725 771 1.377333 GTGGGCCTTCTGTGTAGCC 60.377 63.158 4.53 0.00 44.99 3.93
726 772 0.035056 ATGTGGGCCTTCTGTGTAGC 60.035 55.000 4.53 0.00 0.00 3.58
727 773 3.845781 ATATGTGGGCCTTCTGTGTAG 57.154 47.619 4.53 0.00 0.00 2.74
728 774 3.389983 GGTATATGTGGGCCTTCTGTGTA 59.610 47.826 4.53 0.00 0.00 2.90
729 775 2.172717 GGTATATGTGGGCCTTCTGTGT 59.827 50.000 4.53 0.00 0.00 3.72
730 776 2.806745 CGGTATATGTGGGCCTTCTGTG 60.807 54.545 4.53 0.00 0.00 3.66
731 777 1.416401 CGGTATATGTGGGCCTTCTGT 59.584 52.381 4.53 0.00 0.00 3.41
746 1024 3.181465 ACGAGGCAAGAATTCATCGGTAT 60.181 43.478 8.44 0.00 34.63 2.73
760 1038 7.908827 TTATAATTTTACAGTCACGAGGCAA 57.091 32.000 0.00 0.00 0.00 4.52
816 1097 4.400120 AGTAACACCTTCGTCTCTCTCTT 58.600 43.478 0.00 0.00 0.00 2.85
818 1099 5.876612 TTAGTAACACCTTCGTCTCTCTC 57.123 43.478 0.00 0.00 0.00 3.20
998 1283 1.939934 TCTGTGTTGTTTGCTTCCGAG 59.060 47.619 0.00 0.00 0.00 4.63
999 1284 2.031258 TCTGTGTTGTTTGCTTCCGA 57.969 45.000 0.00 0.00 0.00 4.55
1180 1502 2.076863 CCGTTCTTGGACTTGGTCATC 58.923 52.381 0.14 0.00 33.68 2.92
1350 1672 3.858868 GACGAGCCGGAACAGCACA 62.859 63.158 5.05 0.00 0.00 4.57
1355 1677 2.342279 CTTGGACGAGCCGGAACA 59.658 61.111 5.05 0.00 40.66 3.18
1361 1683 2.359230 AAGCAGCTTGGACGAGCC 60.359 61.111 6.93 0.00 43.74 4.70
1388 1714 0.881796 CCCGCCCAAAAGAGAAGAAC 59.118 55.000 0.00 0.00 0.00 3.01
1527 1858 4.191015 GGAGCACCGGGGGAATCC 62.191 72.222 5.47 2.25 0.00 3.01
1592 1923 1.228124 CTCCACCGCCCAGTTTTGA 60.228 57.895 0.00 0.00 0.00 2.69
1615 1946 1.920325 CCTGCTGAGGGGACTTGGA 60.920 63.158 0.00 0.00 44.43 3.53
1650 1981 2.627863 TGTAAATTCATGCGTGTGGC 57.372 45.000 5.68 0.00 43.96 5.01
1691 2026 3.068307 TCGGCGGAAAATGGAAAGAAAAA 59.932 39.130 7.21 0.00 0.00 1.94
1916 2258 5.669164 AAGTGGCCAAAAGTTTTAGAACA 57.331 34.783 7.24 0.00 38.26 3.18
1917 2259 6.338146 AGAAAGTGGCCAAAAGTTTTAGAAC 58.662 36.000 7.24 0.00 35.97 3.01
1919 2261 6.538945 AAGAAAGTGGCCAAAAGTTTTAGA 57.461 33.333 7.24 0.00 0.00 2.10
1920 2262 6.257849 GGAAAGAAAGTGGCCAAAAGTTTTAG 59.742 38.462 7.24 0.00 0.00 1.85
1921 2263 6.110033 GGAAAGAAAGTGGCCAAAAGTTTTA 58.890 36.000 7.24 0.00 0.00 1.52
2021 2365 4.779733 ATCCTCACCGGCCGACCT 62.780 66.667 30.73 5.22 0.00 3.85
2022 2366 4.222847 GATCCTCACCGGCCGACC 62.223 72.222 30.73 0.00 0.00 4.79
2023 2367 4.222847 GGATCCTCACCGGCCGAC 62.223 72.222 30.73 6.85 0.00 4.79
2029 2373 3.838244 TTTAATCCAGGATCCTCACCG 57.162 47.619 12.69 0.00 0.00 4.94
2073 2420 1.131638 AGAATTCCCGCTGATAGGCA 58.868 50.000 0.65 0.00 0.00 4.75
2076 2423 1.143305 CGCAGAATTCCCGCTGATAG 58.857 55.000 13.77 0.00 34.06 2.08
2105 2452 5.126061 CCCAAAACTACAGATCCCATTTCAG 59.874 44.000 0.00 0.00 0.00 3.02
2153 2500 2.596862 CGCATAATTCAACGACGACAGA 59.403 45.455 0.00 0.00 0.00 3.41
2196 2543 6.561614 AGCTGAATCTGCATGAAATTTGTAG 58.438 36.000 14.35 0.00 0.00 2.74
2209 2556 1.888512 TCCAAACCAAGCTGAATCTGC 59.111 47.619 3.82 3.82 0.00 4.26
2452 2800 6.207417 CCTTCAAAGCAGGAAATACTTCTCAA 59.793 38.462 0.00 0.00 32.41 3.02
2490 2838 8.621286 ACTACAAAAATAAGAAGTGACAACAGG 58.379 33.333 0.00 0.00 0.00 4.00
2531 2879 4.576053 CCTTGTCAGAACTTTCACATGACA 59.424 41.667 0.00 7.92 46.18 3.58
2636 2985 7.078249 TCTGCTTTTATCTGATATGGCCTTA 57.922 36.000 3.32 1.49 0.00 2.69
2672 3021 1.861982 GGTGCCTTGTAGACCTCCTA 58.138 55.000 0.00 0.00 0.00 2.94
2864 3213 3.058846 TCTCTTCGTGAACAGACTTCTCG 60.059 47.826 0.00 0.00 36.94 4.04
2874 3223 0.038526 TCGGGCTTCTCTTCGTGAAC 60.039 55.000 0.00 0.00 0.00 3.18
2876 3225 0.173481 CATCGGGCTTCTCTTCGTGA 59.827 55.000 0.00 0.00 0.00 4.35
2900 3249 5.344743 TTTCAGTTGTCTTCTCTGTCTGT 57.655 39.130 0.00 0.00 0.00 3.41
2930 3279 6.566079 ATTGACCTCTCAATTATCTGGTCA 57.434 37.500 14.55 14.55 43.48 4.02
2945 3294 2.783135 TCTGGCTGTTCAATTGACCTC 58.217 47.619 7.89 2.76 0.00 3.85
2986 3335 1.051008 TTCAGCTGGCTCTTCACTCA 58.949 50.000 15.13 0.00 0.00 3.41
3087 3472 3.746492 GGAACGCTTCTATCAACAAGTGT 59.254 43.478 0.00 0.00 43.59 3.55
3128 3513 1.284657 CAATAGCAGCAGACTCCACG 58.715 55.000 0.00 0.00 0.00 4.94
3187 3572 9.360901 TGAGCATAATAATAGGTGCCAAAATAA 57.639 29.630 0.00 0.00 38.31 1.40
3254 3639 2.756760 CCTTGCCTGCAGTCATGTAAAT 59.243 45.455 13.81 0.00 0.00 1.40
3290 3675 4.701651 TGCAGTTTCACAAGATCCTTATGG 59.298 41.667 0.00 0.00 0.00 2.74
3505 3895 2.648059 CCATGATGTTTCCTCCCAGAC 58.352 52.381 0.00 0.00 0.00 3.51
3545 3935 9.011095 AGCTAAAGGACTTTGTAAAGGTAAATC 57.989 33.333 7.53 0.00 35.70 2.17
4096 4486 5.954150 ACCCACTATTTTCTGCATTCTCAAT 59.046 36.000 0.00 0.00 0.00 2.57
4158 4548 3.630769 ACTCCGAAAGAACAACCTTTTCC 59.369 43.478 0.00 0.00 36.58 3.13
4172 4562 4.755123 GGAAAGAAATGTCTGACTCCGAAA 59.245 41.667 9.51 0.00 33.05 3.46
4175 4565 3.003480 GGGAAAGAAATGTCTGACTCCG 58.997 50.000 9.51 0.00 33.05 4.63
4179 4569 4.145052 ACTTGGGGAAAGAAATGTCTGAC 58.855 43.478 0.00 0.00 39.38 3.51
4294 4684 0.329596 GGGACACATTCAGGAGCCTT 59.670 55.000 0.00 0.00 0.00 4.35
4398 4788 6.016860 CCACAACATTCTCTGTCTTTGAATCA 60.017 38.462 0.00 0.00 36.98 2.57
4434 4824 4.468153 GGATCAGTTTGGGTAGAGAAGTCT 59.532 45.833 0.00 0.00 36.75 3.24
4454 4856 0.259938 GCTGGGTTCCCTTGATGGAT 59.740 55.000 9.43 0.00 38.35 3.41
4473 4875 5.990120 ATTCAGATTTTTCAGGAACAGGG 57.010 39.130 0.00 0.00 0.00 4.45
4495 4897 3.045634 CCATAACATCCTCACTGGGGTA 58.954 50.000 0.00 0.00 36.20 3.69
4510 4912 8.272545 TGCTCAAGATTATATGCATCCATAAC 57.727 34.615 0.19 0.00 37.47 1.89
4511 4913 8.105197 ACTGCTCAAGATTATATGCATCCATAA 58.895 33.333 0.19 3.14 37.47 1.90
4541 4943 1.410517 CGCTTCTAGCTTCCATCTCCA 59.589 52.381 0.00 0.00 39.60 3.86
4704 5106 9.821765 TCAATATTTTGCTTGGGTGAGGTACCA 62.822 40.741 15.94 0.00 40.85 3.25
4738 5140 0.035439 CCAACTGTGCTTCCGGGTAT 60.035 55.000 0.00 0.00 0.00 2.73
4739 5141 1.373435 CCAACTGTGCTTCCGGGTA 59.627 57.895 0.00 0.00 0.00 3.69
4743 5145 0.518636 CATGACCAACTGTGCTTCCG 59.481 55.000 0.00 0.00 0.00 4.30
5250 5652 0.610174 TGCTGCTTGGACTAGTCAGG 59.390 55.000 23.91 13.53 0.00 3.86
5280 5682 2.543012 CAGATTATCTGTGCTGCTTCGG 59.457 50.000 13.65 0.00 39.58 4.30
5343 5745 1.800805 CATTGTCAGACTTGGCGACT 58.199 50.000 1.31 0.00 0.00 4.18
5346 5748 0.167470 CAGCATTGTCAGACTTGGCG 59.833 55.000 1.31 0.00 0.00 5.69
5361 5763 0.321346 TGCGAGGTTCTTGATCAGCA 59.679 50.000 0.00 0.00 0.00 4.41
5475 5877 3.835978 TCTTCCTCGGGTTATTGTCTTGA 59.164 43.478 0.00 0.00 0.00 3.02
5484 5886 1.485066 GAATGCCTCTTCCTCGGGTTA 59.515 52.381 0.00 0.00 0.00 2.85
5610 6012 5.974108 TGAAGGTTATAGCACTTACCAGAC 58.026 41.667 0.00 0.00 33.02 3.51
5711 6113 6.583912 ACATTACATTACTGTGCGTATGTC 57.416 37.500 0.00 0.00 36.79 3.06
5737 6139 1.961133 ATTTGGGAACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
5738 6140 1.961133 TATTTGGGAACGGAGGGAGT 58.039 50.000 0.00 0.00 0.00 3.85
5739 6141 3.577805 AATATTTGGGAACGGAGGGAG 57.422 47.619 0.00 0.00 0.00 4.30
5740 6142 3.010808 ACAAATATTTGGGAACGGAGGGA 59.989 43.478 27.43 0.00 42.34 4.20
5741 6143 3.361786 ACAAATATTTGGGAACGGAGGG 58.638 45.455 27.43 3.22 42.34 4.30
5742 6144 4.270008 AGACAAATATTTGGGAACGGAGG 58.730 43.478 27.43 3.68 42.34 4.30
5743 6145 5.897377 AAGACAAATATTTGGGAACGGAG 57.103 39.130 27.43 4.34 42.34 4.63
5744 6146 6.007703 AGAAAGACAAATATTTGGGAACGGA 58.992 36.000 27.43 0.00 42.34 4.69
5745 6147 6.267496 AGAAAGACAAATATTTGGGAACGG 57.733 37.500 27.43 5.66 42.34 4.44
5746 6148 7.484959 GCTTAGAAAGACAAATATTTGGGAACG 59.515 37.037 27.43 6.31 42.34 3.95
5747 6149 8.303876 TGCTTAGAAAGACAAATATTTGGGAAC 58.696 33.333 27.43 16.80 42.34 3.62
5748 6150 8.415950 TGCTTAGAAAGACAAATATTTGGGAA 57.584 30.769 27.43 11.96 42.34 3.97
5749 6151 8.593945 ATGCTTAGAAAGACAAATATTTGGGA 57.406 30.769 27.43 11.28 42.34 4.37
5750 6152 9.657419 AAATGCTTAGAAAGACAAATATTTGGG 57.343 29.630 27.43 8.32 42.34 4.12
5757 6159 9.211485 CCATTTGAAATGCTTAGAAAGACAAAT 57.789 29.630 12.26 0.00 36.38 2.32
5758 6160 8.420222 TCCATTTGAAATGCTTAGAAAGACAAA 58.580 29.630 12.26 0.00 0.00 2.83
5759 6161 7.867403 GTCCATTTGAAATGCTTAGAAAGACAA 59.133 33.333 12.26 0.00 0.00 3.18
5760 6162 7.014134 TGTCCATTTGAAATGCTTAGAAAGACA 59.986 33.333 12.26 13.38 0.00 3.41
5761 6163 7.327032 GTGTCCATTTGAAATGCTTAGAAAGAC 59.673 37.037 12.26 11.27 0.00 3.01
5762 6164 7.014134 TGTGTCCATTTGAAATGCTTAGAAAGA 59.986 33.333 12.26 0.00 0.00 2.52
5763 6165 7.147312 TGTGTCCATTTGAAATGCTTAGAAAG 58.853 34.615 12.26 0.00 0.00 2.62
5764 6166 7.048629 TGTGTCCATTTGAAATGCTTAGAAA 57.951 32.000 12.26 0.00 0.00 2.52
5765 6167 6.647334 TGTGTCCATTTGAAATGCTTAGAA 57.353 33.333 12.26 0.00 0.00 2.10
5766 6168 6.040278 TGTTGTGTCCATTTGAAATGCTTAGA 59.960 34.615 12.26 1.83 0.00 2.10
5767 6169 6.215121 TGTTGTGTCCATTTGAAATGCTTAG 58.785 36.000 12.26 0.00 0.00 2.18
5768 6170 6.154203 TGTTGTGTCCATTTGAAATGCTTA 57.846 33.333 12.26 0.00 0.00 3.09
5769 6171 5.021033 TGTTGTGTCCATTTGAAATGCTT 57.979 34.783 12.26 0.00 0.00 3.91
5770 6172 4.669206 TGTTGTGTCCATTTGAAATGCT 57.331 36.364 12.26 0.00 0.00 3.79
5771 6173 5.060816 CGTATGTTGTGTCCATTTGAAATGC 59.939 40.000 12.26 0.87 0.00 3.56
5772 6174 5.572511 CCGTATGTTGTGTCCATTTGAAATG 59.427 40.000 10.84 10.84 0.00 2.32
5773 6175 5.475220 TCCGTATGTTGTGTCCATTTGAAAT 59.525 36.000 0.00 0.00 0.00 2.17
5774 6176 4.822350 TCCGTATGTTGTGTCCATTTGAAA 59.178 37.500 0.00 0.00 0.00 2.69
5775 6177 4.390264 TCCGTATGTTGTGTCCATTTGAA 58.610 39.130 0.00 0.00 0.00 2.69
5776 6178 4.009370 TCCGTATGTTGTGTCCATTTGA 57.991 40.909 0.00 0.00 0.00 2.69
5777 6179 4.155826 ACATCCGTATGTTGTGTCCATTTG 59.844 41.667 0.00 0.00 44.07 2.32
5778 6180 4.331968 ACATCCGTATGTTGTGTCCATTT 58.668 39.130 0.00 0.00 44.07 2.32
5779 6181 3.950397 ACATCCGTATGTTGTGTCCATT 58.050 40.909 0.00 0.00 44.07 3.16
5780 6182 3.627395 ACATCCGTATGTTGTGTCCAT 57.373 42.857 0.00 0.00 44.07 3.41
5781 6183 4.438148 CATACATCCGTATGTTGTGTCCA 58.562 43.478 0.00 0.00 46.70 4.02
5790 6192 9.561270 CAAGATAAGTCTACATACATCCGTATG 57.439 37.037 10.32 10.32 45.62 2.39
5791 6193 8.740906 CCAAGATAAGTCTACATACATCCGTAT 58.259 37.037 0.00 0.00 34.79 3.06
5792 6194 7.940688 TCCAAGATAAGTCTACATACATCCGTA 59.059 37.037 0.00 0.00 33.30 4.02
5793 6195 6.776116 TCCAAGATAAGTCTACATACATCCGT 59.224 38.462 0.00 0.00 33.30 4.69
5794 6196 7.040340 ACTCCAAGATAAGTCTACATACATCCG 60.040 40.741 0.00 0.00 33.30 4.18
5795 6197 8.085296 CACTCCAAGATAAGTCTACATACATCC 58.915 40.741 0.00 0.00 33.30 3.51
5796 6198 8.634444 ACACTCCAAGATAAGTCTACATACATC 58.366 37.037 0.00 0.00 33.30 3.06
5797 6199 8.540507 ACACTCCAAGATAAGTCTACATACAT 57.459 34.615 0.00 0.00 33.30 2.29
5798 6200 7.956328 ACACTCCAAGATAAGTCTACATACA 57.044 36.000 0.00 0.00 33.30 2.29
5799 6201 9.339850 TCTACACTCCAAGATAAGTCTACATAC 57.660 37.037 0.00 0.00 33.30 2.39
5801 6203 9.427821 AATCTACACTCCAAGATAAGTCTACAT 57.572 33.333 0.00 0.00 33.30 2.29
5802 6204 8.824756 AATCTACACTCCAAGATAAGTCTACA 57.175 34.615 0.00 0.00 33.30 2.74
5803 6205 8.904834 TGAATCTACACTCCAAGATAAGTCTAC 58.095 37.037 0.00 0.00 33.30 2.59
5804 6206 9.647918 ATGAATCTACACTCCAAGATAAGTCTA 57.352 33.333 0.00 0.00 33.30 2.59
5805 6207 7.962995 TGAATCTACACTCCAAGATAAGTCT 57.037 36.000 0.00 0.00 35.82 3.24
5806 6208 9.255304 GAATGAATCTACACTCCAAGATAAGTC 57.745 37.037 0.00 0.00 32.17 3.01
5807 6209 8.762645 TGAATGAATCTACACTCCAAGATAAGT 58.237 33.333 0.00 0.00 32.17 2.24
5808 6210 9.775854 ATGAATGAATCTACACTCCAAGATAAG 57.224 33.333 0.00 0.00 32.17 1.73
5811 6213 9.471702 AAAATGAATGAATCTACACTCCAAGAT 57.528 29.630 0.00 0.00 33.87 2.40
5812 6214 8.733458 CAAAATGAATGAATCTACACTCCAAGA 58.267 33.333 0.00 0.00 0.00 3.02
5813 6215 7.487189 GCAAAATGAATGAATCTACACTCCAAG 59.513 37.037 0.00 0.00 0.00 3.61
5814 6216 7.177216 AGCAAAATGAATGAATCTACACTCCAA 59.823 33.333 0.00 0.00 0.00 3.53
5815 6217 6.660521 AGCAAAATGAATGAATCTACACTCCA 59.339 34.615 0.00 0.00 0.00 3.86
5816 6218 7.093322 AGCAAAATGAATGAATCTACACTCC 57.907 36.000 0.00 0.00 0.00 3.85
5817 6219 7.192232 GGAGCAAAATGAATGAATCTACACTC 58.808 38.462 0.00 0.00 0.00 3.51
5818 6220 6.183360 CGGAGCAAAATGAATGAATCTACACT 60.183 38.462 0.00 0.00 0.00 3.55
5819 6221 5.967674 CGGAGCAAAATGAATGAATCTACAC 59.032 40.000 0.00 0.00 0.00 2.90
5820 6222 5.647658 ACGGAGCAAAATGAATGAATCTACA 59.352 36.000 0.00 0.00 0.00 2.74
5821 6223 6.124088 ACGGAGCAAAATGAATGAATCTAC 57.876 37.500 0.00 0.00 0.00 2.59
5822 6224 7.498900 ACATACGGAGCAAAATGAATGAATCTA 59.501 33.333 0.00 0.00 0.00 1.98
5823 6225 6.319658 ACATACGGAGCAAAATGAATGAATCT 59.680 34.615 0.00 0.00 0.00 2.40
5824 6226 6.498304 ACATACGGAGCAAAATGAATGAATC 58.502 36.000 0.00 0.00 0.00 2.52
5825 6227 6.455360 ACATACGGAGCAAAATGAATGAAT 57.545 33.333 0.00 0.00 0.00 2.57
5826 6228 5.895636 ACATACGGAGCAAAATGAATGAA 57.104 34.783 0.00 0.00 0.00 2.57
5827 6229 6.112734 ACTACATACGGAGCAAAATGAATGA 58.887 36.000 0.00 0.00 0.00 2.57
5828 6230 6.037062 TGACTACATACGGAGCAAAATGAATG 59.963 38.462 0.00 0.00 0.00 2.67
5829 6231 6.037172 GTGACTACATACGGAGCAAAATGAAT 59.963 38.462 0.00 0.00 0.00 2.57
5830 6232 5.350365 GTGACTACATACGGAGCAAAATGAA 59.650 40.000 0.00 0.00 0.00 2.57
5831 6233 4.868171 GTGACTACATACGGAGCAAAATGA 59.132 41.667 0.00 0.00 0.00 2.57
5832 6234 4.870426 AGTGACTACATACGGAGCAAAATG 59.130 41.667 0.00 0.00 0.00 2.32
5833 6235 5.086104 AGTGACTACATACGGAGCAAAAT 57.914 39.130 0.00 0.00 0.00 1.82
5834 6236 4.530710 AGTGACTACATACGGAGCAAAA 57.469 40.909 0.00 0.00 0.00 2.44
5835 6237 4.242475 CAAGTGACTACATACGGAGCAAA 58.758 43.478 0.00 0.00 0.00 3.68
5836 6238 3.257375 ACAAGTGACTACATACGGAGCAA 59.743 43.478 0.00 0.00 0.00 3.91
5837 6239 2.823747 ACAAGTGACTACATACGGAGCA 59.176 45.455 0.00 0.00 0.00 4.26
5838 6240 3.505464 ACAAGTGACTACATACGGAGC 57.495 47.619 0.00 0.00 0.00 4.70
5839 6241 5.055642 TCAACAAGTGACTACATACGGAG 57.944 43.478 0.00 0.00 0.00 4.63
5840 6242 5.456548 TTCAACAAGTGACTACATACGGA 57.543 39.130 0.00 0.00 35.39 4.69
5841 6243 6.590292 AGATTTCAACAAGTGACTACATACGG 59.410 38.462 0.00 0.00 35.39 4.02
5842 6244 7.542477 AGAGATTTCAACAAGTGACTACATACG 59.458 37.037 0.00 0.00 35.39 3.06
5843 6245 8.764524 AGAGATTTCAACAAGTGACTACATAC 57.235 34.615 0.00 0.00 35.39 2.39
5845 6247 9.778741 TTTAGAGATTTCAACAAGTGACTACAT 57.221 29.630 0.00 0.00 35.39 2.29
5846 6248 9.607988 TTTTAGAGATTTCAACAAGTGACTACA 57.392 29.630 0.00 0.00 35.39 2.74
5849 6251 9.396022 TCTTTTTAGAGATTTCAACAAGTGACT 57.604 29.630 0.00 0.00 35.39 3.41
5850 6252 9.439537 GTCTTTTTAGAGATTTCAACAAGTGAC 57.560 33.333 0.00 0.00 35.39 3.67
5851 6253 9.173021 TGTCTTTTTAGAGATTTCAACAAGTGA 57.827 29.630 0.00 0.00 0.00 3.41
5852 6254 9.787532 TTGTCTTTTTAGAGATTTCAACAAGTG 57.212 29.630 0.00 0.00 0.00 3.16
5865 6267 9.341899 CGTTCCCAAATATTTGTCTTTTTAGAG 57.658 33.333 23.24 7.00 36.45 2.43
5866 6268 8.301002 CCGTTCCCAAATATTTGTCTTTTTAGA 58.699 33.333 23.24 7.17 36.45 2.10
5867 6269 8.301002 TCCGTTCCCAAATATTTGTCTTTTTAG 58.699 33.333 23.24 8.23 36.45 1.85
5868 6270 8.179509 TCCGTTCCCAAATATTTGTCTTTTTA 57.820 30.769 23.24 5.03 36.45 1.52
5869 6271 7.056844 TCCGTTCCCAAATATTTGTCTTTTT 57.943 32.000 23.24 0.00 36.45 1.94
5870 6272 6.295067 CCTCCGTTCCCAAATATTTGTCTTTT 60.295 38.462 23.24 0.00 36.45 2.27
5871 6273 5.185056 CCTCCGTTCCCAAATATTTGTCTTT 59.815 40.000 23.24 0.00 36.45 2.52
5872 6274 4.705023 CCTCCGTTCCCAAATATTTGTCTT 59.295 41.667 23.24 0.00 36.45 3.01
5873 6275 4.270008 CCTCCGTTCCCAAATATTTGTCT 58.730 43.478 23.24 0.00 36.45 3.41
5874 6276 3.380320 CCCTCCGTTCCCAAATATTTGTC 59.620 47.826 23.24 11.68 36.45 3.18
5875 6277 3.010808 TCCCTCCGTTCCCAAATATTTGT 59.989 43.478 23.24 0.00 36.45 2.83
5876 6278 3.626930 TCCCTCCGTTCCCAAATATTTG 58.373 45.455 19.40 19.40 37.90 2.32
5877 6279 3.268595 ACTCCCTCCGTTCCCAAATATTT 59.731 43.478 0.00 0.00 0.00 1.40
5878 6280 2.850568 ACTCCCTCCGTTCCCAAATATT 59.149 45.455 0.00 0.00 0.00 1.28
5879 6281 2.488836 ACTCCCTCCGTTCCCAAATAT 58.511 47.619 0.00 0.00 0.00 1.28
5880 6282 1.961133 ACTCCCTCCGTTCCCAAATA 58.039 50.000 0.00 0.00 0.00 1.40
5881 6283 1.838077 CTACTCCCTCCGTTCCCAAAT 59.162 52.381 0.00 0.00 0.00 2.32
5882 6284 1.272807 CTACTCCCTCCGTTCCCAAA 58.727 55.000 0.00 0.00 0.00 3.28
5883 6285 0.115745 ACTACTCCCTCCGTTCCCAA 59.884 55.000 0.00 0.00 0.00 4.12
5884 6286 1.002069 TACTACTCCCTCCGTTCCCA 58.998 55.000 0.00 0.00 0.00 4.37
5885 6287 1.064091 ACTACTACTCCCTCCGTTCCC 60.064 57.143 0.00 0.00 0.00 3.97
5886 6288 2.433662 ACTACTACTCCCTCCGTTCC 57.566 55.000 0.00 0.00 0.00 3.62
5887 6289 5.375773 AGATAACTACTACTCCCTCCGTTC 58.624 45.833 0.00 0.00 0.00 3.95
5888 6290 5.385628 AGATAACTACTACTCCCTCCGTT 57.614 43.478 0.00 0.00 0.00 4.44
5889 6291 5.385628 AAGATAACTACTACTCCCTCCGT 57.614 43.478 0.00 0.00 0.00 4.69
5890 6292 5.826737 TGAAAGATAACTACTACTCCCTCCG 59.173 44.000 0.00 0.00 0.00 4.63
5891 6293 6.239092 GCTGAAAGATAACTACTACTCCCTCC 60.239 46.154 0.00 0.00 34.07 4.30
5892 6294 6.321690 TGCTGAAAGATAACTACTACTCCCTC 59.678 42.308 0.00 0.00 34.07 4.30
5893 6295 6.195700 TGCTGAAAGATAACTACTACTCCCT 58.804 40.000 0.00 0.00 34.07 4.20
5894 6296 6.097129 ACTGCTGAAAGATAACTACTACTCCC 59.903 42.308 0.00 0.00 34.07 4.30
5895 6297 6.975772 CACTGCTGAAAGATAACTACTACTCC 59.024 42.308 0.00 0.00 34.07 3.85
5896 6298 7.540299 ACACTGCTGAAAGATAACTACTACTC 58.460 38.462 0.00 0.00 34.07 2.59
5897 6299 7.469537 ACACTGCTGAAAGATAACTACTACT 57.530 36.000 0.00 0.00 34.07 2.57
5898 6300 7.428761 CGTACACTGCTGAAAGATAACTACTAC 59.571 40.741 0.00 0.00 34.07 2.73
5899 6301 7.120285 ACGTACACTGCTGAAAGATAACTACTA 59.880 37.037 0.00 0.00 34.07 1.82
5909 6311 2.726760 GACAGACGTACACTGCTGAAAG 59.273 50.000 14.37 0.00 38.74 2.62
5942 6344 4.813161 CCACCTCTTATCTGTGCACATAAG 59.187 45.833 24.80 24.80 34.93 1.73
6006 6408 5.621104 CGTGGGATGAGTGCTTCTAGATATC 60.621 48.000 0.00 0.00 0.00 1.63
6028 6430 1.219522 CGACGAGAAAACAAGGGCGT 61.220 55.000 0.00 0.00 34.39 5.68
6218 6622 2.738521 CTGGTGTTGCTCGTCCCG 60.739 66.667 0.00 0.00 0.00 5.14
6221 6625 1.498865 CCACACTGGTGTTGCTCGTC 61.499 60.000 3.41 0.00 42.83 4.20
6232 6636 6.457355 TCATCATTTTTCAAATCCACACTGG 58.543 36.000 0.00 0.00 39.43 4.00
6264 6668 3.187637 GCGACAACCAGCAACAAATACTA 59.812 43.478 0.00 0.00 0.00 1.82
6265 6669 2.031157 GCGACAACCAGCAACAAATACT 60.031 45.455 0.00 0.00 0.00 2.12
6266 6670 2.031157 AGCGACAACCAGCAACAAATAC 60.031 45.455 0.00 0.00 35.48 1.89
6277 6681 0.678950 TCAGACATCAGCGACAACCA 59.321 50.000 0.00 0.00 0.00 3.67
6283 6687 3.599730 ACTTCATTCAGACATCAGCGA 57.400 42.857 0.00 0.00 0.00 4.93
6434 6839 8.662781 AGCGATGTGTAATCTTTTGTACATAT 57.337 30.769 0.00 0.00 35.51 1.78
6444 6849 6.717540 ACTCCTATCTAGCGATGTGTAATCTT 59.282 38.462 0.00 0.00 0.00 2.40
6499 6904 3.200385 AGTCGAGTAGAGCTAGGGAAAGA 59.800 47.826 0.00 0.00 0.00 2.52
6501 6906 3.648507 AGTCGAGTAGAGCTAGGGAAA 57.351 47.619 0.00 0.00 0.00 3.13
6502 6907 3.710677 AGTAGTCGAGTAGAGCTAGGGAA 59.289 47.826 0.00 0.00 0.00 3.97
6665 7070 3.296854 ACACCCTCGTGATGCTAATCTA 58.703 45.455 0.00 0.00 43.14 1.98
6859 7264 4.161565 TGTTATATGTGTGACCAGGAGGAC 59.838 45.833 0.00 0.00 38.69 3.85
6920 7325 2.104967 TCGTTTATGGACCTCGGACAT 58.895 47.619 0.00 0.00 0.00 3.06
7108 7513 2.552315 GGAAGTTCATTTGGACGCTCAA 59.448 45.455 5.01 0.00 0.00 3.02
7158 7563 0.837691 ATGCACTGAGGGTCTCACCA 60.838 55.000 0.00 0.00 41.02 4.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.