Multiple sequence alignment - TraesCS2B01G520300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G520300 chr2B 100.000 7397 0 0 1 7397 714785741 714793137 0.000000e+00 13660.0
1 TraesCS2B01G520300 chr2D 90.975 5784 309 110 19 5747 590156154 590161779 0.000000e+00 7592.0
2 TraesCS2B01G520300 chr2D 95.648 1011 36 3 5471 6474 590161566 590162575 0.000000e+00 1616.0
3 TraesCS2B01G520300 chr2D 92.780 554 27 8 6473 7013 590162619 590163172 0.000000e+00 789.0
4 TraesCS2B01G520300 chr2D 92.121 165 8 2 7194 7355 590163448 590163610 2.080000e-55 228.0
5 TraesCS2B01G520300 chr2A 89.394 1980 133 33 5471 7397 724529142 724531097 0.000000e+00 2422.0
6 TraesCS2B01G520300 chr2A 96.046 1492 44 8 4265 5747 724527870 724529355 0.000000e+00 2414.0
7 TraesCS2B01G520300 chr2A 87.605 1428 89 42 1 1397 724523515 724524885 0.000000e+00 1576.0
8 TraesCS2B01G520300 chr2A 87.377 1418 68 47 2786 4165 724526503 724527847 0.000000e+00 1524.0
9 TraesCS2B01G520300 chr2A 88.011 709 34 17 2068 2750 724525831 724526514 0.000000e+00 791.0
10 TraesCS2B01G520300 chr2A 84.000 225 32 3 6609 6832 119341802 119342023 5.810000e-51 213.0
11 TraesCS2B01G520300 chr2A 88.276 145 9 4 7102 7240 578387576 578387718 4.590000e-37 167.0
12 TraesCS2B01G520300 chr2A 86.486 148 11 5 7101 7242 324614945 324615089 3.570000e-33 154.0
13 TraesCS2B01G520300 chr2A 79.060 234 30 14 1479 1710 724525211 724525427 7.740000e-30 143.0
14 TraesCS2B01G520300 chr2A 93.478 46 2 1 3896 3940 724527527 724527572 4.790000e-07 67.6
15 TraesCS2B01G520300 chr5B 85.446 213 23 8 6592 6800 428579537 428579745 1.620000e-51 215.0
16 TraesCS2B01G520300 chr7B 83.621 232 33 5 6608 6837 705488200 705487972 5.810000e-51 213.0
17 TraesCS2B01G520300 chr1B 83.333 234 30 8 6608 6837 666009053 666008825 2.700000e-49 207.0
18 TraesCS2B01G520300 chr3D 82.427 239 38 4 6608 6845 305497162 305497397 9.730000e-49 206.0
19 TraesCS2B01G520300 chr3D 86.897 145 11 4 7101 7239 313908743 313908601 9.940000e-34 156.0
20 TraesCS2B01G520300 chr3D 86.486 148 11 4 7102 7243 32623379 32623523 3.570000e-33 154.0
21 TraesCS2B01G520300 chr3D 85.256 156 13 7 7101 7248 53464841 53464994 1.290000e-32 152.0
22 TraesCS2B01G520300 chr6D 84.360 211 28 4 6588 6797 25991435 25991641 1.260000e-47 202.0
23 TraesCS2B01G520300 chr6D 82.251 231 37 3 6608 6837 68074978 68075205 5.850000e-46 196.0
24 TraesCS2B01G520300 chr6D 82.328 232 36 5 6608 6837 348087850 348087622 5.850000e-46 196.0
25 TraesCS2B01G520300 chr6D 86.000 150 11 7 7101 7243 428908358 428908504 1.290000e-32 152.0
26 TraesCS2B01G520300 chr7D 87.671 146 10 5 7101 7240 571260901 571261044 5.940000e-36 163.0
27 TraesCS2B01G520300 chr7A 86.986 146 10 5 7101 7239 724241134 724241277 9.940000e-34 156.0
28 TraesCS2B01G520300 chr4D 86.897 145 11 3 7101 7239 10986118 10985976 9.940000e-34 156.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G520300 chr2B 714785741 714793137 7396 False 13660.00 13660 100.000000 1 7397 1 chr2B.!!$F1 7396
1 TraesCS2B01G520300 chr2D 590156154 590163610 7456 False 2556.25 7592 92.881000 19 7355 4 chr2D.!!$F1 7336
2 TraesCS2B01G520300 chr2A 724523515 724531097 7582 False 1276.80 2422 88.710143 1 7397 7 chr2A.!!$F4 7396

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
570 579 0.025898 TCATCATCGTCGTCGTCGTC 59.974 55.000 11.41 0.0 38.33 4.20 F
867 886 0.252012 TTCGGGGTCGGGTTAGGTTA 60.252 55.000 0.00 0.0 36.95 2.85 F
1861 2176 0.033796 ATGCAGACAATGTGGGGGAG 60.034 55.000 0.00 0.0 0.00 4.30 F
1868 2183 0.256752 CAATGTGGGGGAGATGAGCA 59.743 55.000 0.00 0.0 0.00 4.26 F
2674 3124 0.384309 CACAATAGCCCAGCAGCATG 59.616 55.000 0.00 0.0 40.87 4.06 F
4146 4636 1.203025 AGTCAGTCGTACACCTTCCCT 60.203 52.381 0.00 0.0 0.00 4.20 F
4188 4678 0.032813 AGTGCATAGCCAAGCCCATT 60.033 50.000 0.00 0.0 0.00 3.16 F
4198 4688 0.246086 CAAGCCCATTTTTAGCGCCA 59.754 50.000 2.29 0.0 0.00 5.69 F
5491 6022 1.065491 TGAATCATCCACCCGGTTCTG 60.065 52.381 0.00 0.0 0.00 3.02 F
6217 6808 0.617820 TTGACTCCCTCCCAGTAGCC 60.618 60.000 0.00 0.0 0.00 3.93 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1402 1455 0.106015 GGGTTGGGAGGGATGGATTG 60.106 60.000 0.00 0.0 0.00 2.67 R
1937 2253 0.692476 TTCCCAGGAGGTGTCATGTG 59.308 55.000 0.00 0.0 32.31 3.21 R
2674 3124 2.640316 ACCAGTCCTCCAGAACAAAC 57.360 50.000 0.00 0.0 0.00 2.93 R
3408 3866 3.763097 TTTCCTGTTATCGCAAGCATG 57.237 42.857 0.00 0.0 37.18 4.06 R
4179 4669 0.246086 TGGCGCTAAAAATGGGCTTG 59.754 50.000 7.64 0.0 42.03 4.01 R
5802 6393 1.681666 CTGCCTCTCACCACCATGT 59.318 57.895 0.00 0.0 0.00 3.21 R
5870 6461 5.104109 TCAATACCATTAGTTTGGGGAGGAG 60.104 44.000 0.00 0.0 41.35 3.69 R
6153 6744 6.876155 TGCAATATTTACTGAACCATGCATT 58.124 32.000 0.00 0.0 0.00 3.56 R
6331 6932 0.729116 CAGCATCAAACTAGCCACGG 59.271 55.000 0.00 0.0 0.00 4.94 R
7329 8088 2.093306 AAACCGCGATGAAGACATGA 57.907 45.000 8.23 0.0 36.82 3.07 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 4.648762 TGTTGTTGACTTGGAATGTGGATT 59.351 37.500 0.00 0.00 0.00 3.01
37 38 3.005684 TGTTGACTTGGAATGTGGATTGC 59.994 43.478 0.00 0.00 0.00 3.56
156 157 1.079405 GCGCCCAGTAGTGTGCTTA 60.079 57.895 0.00 0.00 35.20 3.09
164 165 5.453339 GCCCAGTAGTGTGCTTATCATAGAA 60.453 44.000 0.00 0.00 0.00 2.10
177 178 6.463049 GCTTATCATAGAACCAGCTGGAAGTA 60.463 42.308 39.19 24.11 38.94 2.24
178 179 5.543507 ATCATAGAACCAGCTGGAAGTAG 57.456 43.478 39.19 21.75 38.94 2.57
179 180 4.353777 TCATAGAACCAGCTGGAAGTAGT 58.646 43.478 39.19 13.13 38.94 2.73
180 181 5.516044 TCATAGAACCAGCTGGAAGTAGTA 58.484 41.667 39.19 19.42 38.94 1.82
181 182 5.594725 TCATAGAACCAGCTGGAAGTAGTAG 59.405 44.000 39.19 19.54 38.94 2.57
182 183 2.498078 AGAACCAGCTGGAAGTAGTAGC 59.502 50.000 39.19 15.24 38.94 3.58
183 184 1.938585 ACCAGCTGGAAGTAGTAGCA 58.061 50.000 39.19 0.00 39.84 3.49
199 200 1.800805 AGCACTTTGATCAGTGTCCG 58.199 50.000 14.52 1.61 45.31 4.79
258 259 3.209410 CGCTTAGGCATTTCCAGAATCT 58.791 45.455 0.00 0.00 38.60 2.40
262 263 5.678107 GCTTAGGCATTTCCAGAATCTTGTG 60.678 44.000 0.00 0.00 38.54 3.33
267 268 1.428448 TTCCAGAATCTTGTGTCGCG 58.572 50.000 0.00 0.00 0.00 5.87
295 296 4.313282 CAGAACTCTGAAGATGCTTCACA 58.687 43.478 5.81 1.54 46.59 3.58
400 403 4.022935 AGCAAAGCATTCGAAAGTTGATGA 60.023 37.500 0.00 0.00 0.00 2.92
559 568 3.001634 ACTGTGCGCTTTTATCATCATCG 59.998 43.478 9.73 0.00 0.00 3.84
562 571 2.218530 TGCGCTTTTATCATCATCGTCG 59.781 45.455 9.73 0.00 0.00 5.12
564 573 3.659364 GCGCTTTTATCATCATCGTCGTC 60.659 47.826 0.00 0.00 0.00 4.20
565 574 3.419275 CGCTTTTATCATCATCGTCGTCG 60.419 47.826 0.00 0.00 38.55 5.12
566 575 3.486108 GCTTTTATCATCATCGTCGTCGT 59.514 43.478 1.33 0.00 38.33 4.34
568 577 2.572173 TATCATCATCGTCGTCGTCG 57.428 50.000 5.50 5.50 38.33 5.12
569 578 0.656259 ATCATCATCGTCGTCGTCGT 59.344 50.000 11.41 0.00 38.33 4.34
570 579 0.025898 TCATCATCGTCGTCGTCGTC 59.974 55.000 11.41 0.00 38.33 4.20
571 580 1.012562 ATCATCGTCGTCGTCGTCG 60.013 57.895 14.18 14.18 46.06 5.12
572 581 1.690283 ATCATCGTCGTCGTCGTCGT 61.690 55.000 18.44 6.36 45.27 4.34
573 582 1.922220 CATCGTCGTCGTCGTCGTC 60.922 63.158 18.44 5.52 45.27 4.20
574 583 3.397649 ATCGTCGTCGTCGTCGTCG 62.398 63.158 20.39 20.39 45.27 5.12
575 584 4.400776 CGTCGTCGTCGTCGTCGT 62.401 66.667 18.87 0.00 45.27 4.34
576 585 2.566765 GTCGTCGTCGTCGTCGTC 60.567 66.667 18.44 11.28 45.27 4.20
577 586 3.029735 TCGTCGTCGTCGTCGTCA 61.030 61.111 18.44 1.12 45.27 4.35
580 589 1.368019 GTCGTCGTCGTCGTCACAA 60.368 57.895 11.41 0.00 38.33 3.33
634 644 3.079578 GCCTCCTTAAAACGCTAACCTT 58.920 45.455 0.00 0.00 0.00 3.50
643 653 5.526010 AAAACGCTAACCTTCGACTAATG 57.474 39.130 0.00 0.00 0.00 1.90
644 654 2.537401 ACGCTAACCTTCGACTAATGC 58.463 47.619 0.00 0.00 0.00 3.56
646 656 2.537401 GCTAACCTTCGACTAATGCGT 58.463 47.619 0.00 0.00 0.00 5.24
649 659 4.142966 GCTAACCTTCGACTAATGCGTTTT 60.143 41.667 0.00 0.00 0.00 2.43
655 665 4.123276 TCGACTAATGCGTTTTTGTCAC 57.877 40.909 0.00 0.00 0.00 3.67
656 666 3.556365 TCGACTAATGCGTTTTTGTCACA 59.444 39.130 0.00 0.00 0.00 3.58
657 667 4.034163 TCGACTAATGCGTTTTTGTCACAA 59.966 37.500 0.00 0.00 0.00 3.33
662 672 5.942325 AATGCGTTTTTGTCACAAAGTAC 57.058 34.783 2.58 5.44 0.00 2.73
663 673 3.418094 TGCGTTTTTGTCACAAAGTACG 58.582 40.909 24.50 24.50 0.00 3.67
664 674 3.120269 TGCGTTTTTGTCACAAAGTACGT 60.120 39.130 26.95 0.00 0.00 3.57
665 675 4.092529 TGCGTTTTTGTCACAAAGTACGTA 59.907 37.500 26.95 23.36 0.00 3.57
666 676 4.663091 GCGTTTTTGTCACAAAGTACGTAG 59.337 41.667 26.95 11.36 0.00 3.51
668 678 6.507771 GCGTTTTTGTCACAAAGTACGTAGTA 60.508 38.462 26.95 2.63 45.11 1.82
705 715 4.217118 ACTTTGCTCAATCTGCTAACCAAG 59.783 41.667 0.00 0.00 0.00 3.61
711 721 6.127925 TGCTCAATCTGCTAACCAAGTTTATG 60.128 38.462 0.00 0.00 0.00 1.90
721 731 8.533657 TGCTAACCAAGTTTATGCTACTAGTAA 58.466 33.333 3.76 0.00 0.00 2.24
722 732 9.374838 GCTAACCAAGTTTATGCTACTAGTAAA 57.625 33.333 3.76 0.00 0.00 2.01
772 791 4.858433 TTACGGATCGTGGCGGCG 62.858 66.667 0.51 0.51 41.39 6.46
815 834 0.692419 CAGGCTGATAGGTGGAGGGT 60.692 60.000 9.42 0.00 0.00 4.34
818 837 2.089925 AGGCTGATAGGTGGAGGGTAAT 60.090 50.000 0.00 0.00 0.00 1.89
842 861 0.693622 TAAATTCACACCGGGCTGGA 59.306 50.000 21.81 0.00 42.00 3.86
850 869 2.190578 CCGGGCTGGACTGGATTC 59.809 66.667 6.48 0.00 42.00 2.52
867 886 0.252012 TTCGGGGTCGGGTTAGGTTA 60.252 55.000 0.00 0.00 36.95 2.85
868 887 0.684153 TCGGGGTCGGGTTAGGTTAG 60.684 60.000 0.00 0.00 36.95 2.34
870 889 0.618680 GGGGTCGGGTTAGGTTAGGT 60.619 60.000 0.00 0.00 0.00 3.08
873 892 2.040278 GGGTCGGGTTAGGTTAGGTTTT 59.960 50.000 0.00 0.00 0.00 2.43
877 903 3.076621 CGGGTTAGGTTAGGTTTTGGTC 58.923 50.000 0.00 0.00 0.00 4.02
884 910 3.951680 AGGTTAGGTTTTGGTCTGTGTTG 59.048 43.478 0.00 0.00 0.00 3.33
907 934 3.066203 GGATTAAATCAAATCGTGGCGGT 59.934 43.478 0.00 0.00 36.84 5.68
985 1023 3.554324 GGGGAAAAGAAAGAAACGCAAAC 59.446 43.478 0.00 0.00 0.00 2.93
1054 1092 2.759114 CAGCCACCACCACATCCT 59.241 61.111 0.00 0.00 0.00 3.24
1057 1095 2.606587 GCCACCACCACATCCTCCT 61.607 63.158 0.00 0.00 0.00 3.69
1058 1096 1.604378 CCACCACCACATCCTCCTC 59.396 63.158 0.00 0.00 0.00 3.71
1060 1098 0.911525 CACCACCACATCCTCCTCCT 60.912 60.000 0.00 0.00 0.00 3.69
1061 1099 0.618968 ACCACCACATCCTCCTCCTC 60.619 60.000 0.00 0.00 0.00 3.71
1062 1100 1.680522 CCACCACATCCTCCTCCTCG 61.681 65.000 0.00 0.00 0.00 4.63
1063 1101 2.060980 ACCACATCCTCCTCCTCGC 61.061 63.158 0.00 0.00 0.00 5.03
1064 1102 1.760086 CCACATCCTCCTCCTCGCT 60.760 63.158 0.00 0.00 0.00 4.93
1065 1103 1.739049 CACATCCTCCTCCTCGCTC 59.261 63.158 0.00 0.00 0.00 5.03
1066 1104 1.826054 ACATCCTCCTCCTCGCTCG 60.826 63.158 0.00 0.00 0.00 5.03
1091 1129 3.391382 CCTCACCACCTCCCGTCC 61.391 72.222 0.00 0.00 0.00 4.79
1095 1133 4.716977 ACCACCTCCCGTCCCCTC 62.717 72.222 0.00 0.00 0.00 4.30
1192 1232 4.200283 CCCCGACTGCGAGCTCTC 62.200 72.222 12.85 4.04 40.82 3.20
1193 1233 4.200283 CCCGACTGCGAGCTCTCC 62.200 72.222 12.85 3.14 40.82 3.71
1194 1234 4.200283 CCGACTGCGAGCTCTCCC 62.200 72.222 12.85 0.45 40.82 4.30
1213 1257 3.726517 TCCGTCCGTTCCGTCGAC 61.727 66.667 5.18 5.18 0.00 4.20
1397 1450 4.218200 CCAACAAAACACCTGATGATGCTA 59.782 41.667 0.00 0.00 0.00 3.49
1398 1451 5.396484 CAACAAAACACCTGATGATGCTAG 58.604 41.667 0.00 0.00 0.00 3.42
1399 1452 4.655963 ACAAAACACCTGATGATGCTAGT 58.344 39.130 0.00 0.00 0.00 2.57
1400 1453 5.072741 ACAAAACACCTGATGATGCTAGTT 58.927 37.500 0.00 0.00 0.00 2.24
1402 1455 5.886960 AAACACCTGATGATGCTAGTTTC 57.113 39.130 0.00 0.00 0.00 2.78
1403 1456 4.558226 ACACCTGATGATGCTAGTTTCA 57.442 40.909 0.00 0.00 0.00 2.69
1405 1458 5.503927 ACACCTGATGATGCTAGTTTCAAT 58.496 37.500 1.62 0.00 0.00 2.57
1406 1459 5.587844 ACACCTGATGATGCTAGTTTCAATC 59.412 40.000 1.62 2.18 0.00 2.67
1408 1461 5.128205 CCTGATGATGCTAGTTTCAATCCA 58.872 41.667 1.62 1.21 0.00 3.41
1409 1462 5.768662 CCTGATGATGCTAGTTTCAATCCAT 59.231 40.000 1.62 0.00 0.00 3.41
1412 1465 4.464008 TGATGCTAGTTTCAATCCATCCC 58.536 43.478 0.00 0.00 0.00 3.85
1413 1466 4.166725 TGATGCTAGTTTCAATCCATCCCT 59.833 41.667 0.00 0.00 0.00 4.20
1414 1467 4.156455 TGCTAGTTTCAATCCATCCCTC 57.844 45.455 0.00 0.00 0.00 4.30
1415 1468 3.117888 TGCTAGTTTCAATCCATCCCTCC 60.118 47.826 0.00 0.00 0.00 4.30
1416 1469 3.748989 GCTAGTTTCAATCCATCCCTCCC 60.749 52.174 0.00 0.00 0.00 4.30
1417 1470 2.287584 AGTTTCAATCCATCCCTCCCA 58.712 47.619 0.00 0.00 0.00 4.37
1418 1471 2.654385 AGTTTCAATCCATCCCTCCCAA 59.346 45.455 0.00 0.00 0.00 4.12
1419 1472 2.760650 GTTTCAATCCATCCCTCCCAAC 59.239 50.000 0.00 0.00 0.00 3.77
1420 1473 0.926293 TCAATCCATCCCTCCCAACC 59.074 55.000 0.00 0.00 0.00 3.77
1421 1474 0.106015 CAATCCATCCCTCCCAACCC 60.106 60.000 0.00 0.00 0.00 4.11
1422 1475 0.554865 AATCCATCCCTCCCAACCCA 60.555 55.000 0.00 0.00 0.00 4.51
1423 1476 0.329831 ATCCATCCCTCCCAACCCAT 60.330 55.000 0.00 0.00 0.00 4.00
1424 1477 0.993509 TCCATCCCTCCCAACCCATC 60.994 60.000 0.00 0.00 0.00 3.51
1425 1478 1.538666 CATCCCTCCCAACCCATCC 59.461 63.158 0.00 0.00 0.00 3.51
1426 1479 2.078665 ATCCCTCCCAACCCATCCG 61.079 63.158 0.00 0.00 0.00 4.18
1427 1480 4.506255 CCCTCCCAACCCATCCGC 62.506 72.222 0.00 0.00 0.00 5.54
1428 1481 4.506255 CCTCCCAACCCATCCGCC 62.506 72.222 0.00 0.00 0.00 6.13
1471 1776 4.176851 GGACTCGTCCGTCGCCTC 62.177 72.222 0.00 0.00 40.36 4.70
1498 1803 3.378911 TTTCGGATTTGCTTGGTTTCC 57.621 42.857 0.00 0.00 0.00 3.13
1501 1806 2.162681 CGGATTTGCTTGGTTTCCTCT 58.837 47.619 0.00 0.00 0.00 3.69
1502 1807 2.558359 CGGATTTGCTTGGTTTCCTCTT 59.442 45.455 0.00 0.00 0.00 2.85
1515 1821 4.102649 GTTTCCTCTTGTTTGTTGAACGG 58.897 43.478 0.00 0.00 41.29 4.44
1516 1822 2.993937 TCCTCTTGTTTGTTGAACGGT 58.006 42.857 0.00 0.00 41.29 4.83
1517 1823 2.940410 TCCTCTTGTTTGTTGAACGGTC 59.060 45.455 0.00 0.00 41.29 4.79
1518 1824 2.943033 CCTCTTGTTTGTTGAACGGTCT 59.057 45.455 0.33 0.00 41.29 3.85
1520 1826 4.573201 CCTCTTGTTTGTTGAACGGTCTAA 59.427 41.667 0.33 0.00 41.29 2.10
1530 1836 7.591006 TGTTGAACGGTCTAATTAATCTGTC 57.409 36.000 0.33 0.00 0.00 3.51
1540 1846 2.157834 TTAATCTGTCGTTGCGTGGT 57.842 45.000 0.00 0.00 0.00 4.16
1543 1849 1.640428 ATCTGTCGTTGCGTGGTATG 58.360 50.000 0.00 0.00 0.00 2.39
1551 1857 2.658593 GCGTGGTATGCGCGATCT 60.659 61.111 12.10 0.00 45.36 2.75
1553 1859 1.559814 CGTGGTATGCGCGATCTTG 59.440 57.895 12.10 0.00 0.00 3.02
1554 1860 1.276844 GTGGTATGCGCGATCTTGC 59.723 57.895 12.10 0.00 0.00 4.01
1556 1862 1.153597 TGGTATGCGCGATCTTGCTG 61.154 55.000 12.10 0.00 0.00 4.41
1558 1864 1.487482 GTATGCGCGATCTTGCTGTA 58.513 50.000 12.10 0.00 0.00 2.74
1559 1865 2.061773 GTATGCGCGATCTTGCTGTAT 58.938 47.619 12.10 0.00 0.00 2.29
1560 1866 0.863799 ATGCGCGATCTTGCTGTATG 59.136 50.000 12.10 0.00 0.00 2.39
1561 1867 1.153597 TGCGCGATCTTGCTGTATGG 61.154 55.000 12.10 0.00 0.00 2.74
1562 1868 0.875908 GCGCGATCTTGCTGTATGGA 60.876 55.000 12.10 0.00 0.00 3.41
1564 1870 1.723542 CGCGATCTTGCTGTATGGATC 59.276 52.381 0.00 0.00 33.41 3.36
1576 1882 4.324402 GCTGTATGGATCGCTTTTGTTTTG 59.676 41.667 0.00 0.00 0.00 2.44
1608 1914 2.959071 GCGAGATGCGTGGAGAGC 60.959 66.667 0.00 0.00 43.41 4.09
1610 1916 2.279120 GAGATGCGTGGAGAGCCG 60.279 66.667 0.00 0.00 36.79 5.52
1617 1923 3.755628 GTGGAGAGCCGCCGTGTA 61.756 66.667 0.00 0.00 38.80 2.90
1618 1924 2.758327 TGGAGAGCCGCCGTGTAT 60.758 61.111 0.00 0.00 36.79 2.29
1619 1925 1.454295 TGGAGAGCCGCCGTGTATA 60.454 57.895 0.00 0.00 36.79 1.47
1637 1943 6.951530 CGTGTATAAAAACAAACGATGACGAT 59.048 34.615 0.00 0.00 42.66 3.73
1642 1948 2.811902 ACAAACGATGACGATGCATG 57.188 45.000 2.46 0.00 42.66 4.06
1657 1967 4.024048 CGATGCATGTAGGTTTTGTATCCC 60.024 45.833 2.46 0.00 31.30 3.85
1692 2002 6.016777 GCGGAATAGAATGAGATGTGGATTTT 60.017 38.462 0.00 0.00 0.00 1.82
1705 2015 3.380004 TGTGGATTTTCGTTCTGCAAACT 59.620 39.130 9.17 0.00 0.00 2.66
1712 2022 1.661509 GTTCTGCAAACTTGGCGGC 60.662 57.895 0.00 0.00 37.56 6.53
1758 2073 1.159713 CGGCGCTCATGGCAGATAAA 61.160 55.000 7.64 0.00 41.91 1.40
1762 2077 2.291465 GCGCTCATGGCAGATAAATTCA 59.709 45.455 0.00 0.00 41.91 2.57
1768 2083 1.401552 TGGCAGATAAATTCAGTGCGC 59.598 47.619 0.00 0.00 34.86 6.09
1770 2085 1.595489 GCAGATAAATTCAGTGCGCGG 60.595 52.381 8.83 0.00 0.00 6.46
1776 2091 0.519961 AATTCAGTGCGCGGTTAACC 59.480 50.000 15.13 15.13 0.00 2.85
1820 2135 1.796017 TCGAACCACCCCTGCATATA 58.204 50.000 0.00 0.00 0.00 0.86
1824 2139 3.679389 GAACCACCCCTGCATATATCTG 58.321 50.000 0.00 0.00 0.00 2.90
1825 2140 2.706350 ACCACCCCTGCATATATCTGT 58.294 47.619 0.00 0.00 0.00 3.41
1826 2141 3.869310 ACCACCCCTGCATATATCTGTA 58.131 45.455 0.00 0.00 0.00 2.74
1827 2142 4.438913 ACCACCCCTGCATATATCTGTAT 58.561 43.478 0.00 0.00 0.00 2.29
1828 2143 4.471386 ACCACCCCTGCATATATCTGTATC 59.529 45.833 0.00 0.00 0.00 2.24
1831 2146 6.475504 CACCCCTGCATATATCTGTATCAAA 58.524 40.000 0.00 0.00 0.00 2.69
1833 2148 7.120285 CACCCCTGCATATATCTGTATCAAAAG 59.880 40.741 0.00 0.00 0.00 2.27
1860 2175 0.034186 GATGCAGACAATGTGGGGGA 60.034 55.000 0.00 0.00 0.00 4.81
1861 2176 0.033796 ATGCAGACAATGTGGGGGAG 60.034 55.000 0.00 0.00 0.00 4.30
1862 2177 1.133181 TGCAGACAATGTGGGGGAGA 61.133 55.000 0.00 0.00 0.00 3.71
1863 2178 0.257039 GCAGACAATGTGGGGGAGAT 59.743 55.000 0.00 0.00 0.00 2.75
1864 2179 2.020694 GCAGACAATGTGGGGGAGATG 61.021 57.143 0.00 0.00 0.00 2.90
1866 2181 1.842562 AGACAATGTGGGGGAGATGAG 59.157 52.381 0.00 0.00 0.00 2.90
1867 2182 0.257039 ACAATGTGGGGGAGATGAGC 59.743 55.000 0.00 0.00 0.00 4.26
1868 2183 0.256752 CAATGTGGGGGAGATGAGCA 59.743 55.000 0.00 0.00 0.00 4.26
1871 2186 1.002069 TGTGGGGGAGATGAGCAAAT 58.998 50.000 0.00 0.00 0.00 2.32
1872 2187 1.064463 TGTGGGGGAGATGAGCAAATC 60.064 52.381 0.00 0.00 0.00 2.17
1873 2188 1.064463 GTGGGGGAGATGAGCAAATCA 60.064 52.381 1.99 0.00 43.70 2.57
1875 2190 1.492176 GGGGGAGATGAGCAAATCAGA 59.508 52.381 1.99 0.00 42.53 3.27
1877 2192 2.948315 GGGGAGATGAGCAAATCAGAAC 59.052 50.000 1.99 0.00 42.53 3.01
1878 2193 3.371380 GGGGAGATGAGCAAATCAGAACT 60.371 47.826 1.99 0.00 42.53 3.01
1880 2195 4.096081 GGGAGATGAGCAAATCAGAACTTG 59.904 45.833 1.99 0.00 42.53 3.16
1881 2196 4.699257 GGAGATGAGCAAATCAGAACTTGT 59.301 41.667 1.99 0.00 42.53 3.16
1885 2200 9.102757 GAGATGAGCAAATCAGAACTTGTAATA 57.897 33.333 1.99 0.00 42.53 0.98
1899 2214 8.896744 AGAACTTGTAATATGAATGATGTGTGG 58.103 33.333 0.00 0.00 0.00 4.17
1948 2264 4.383118 GCATCTAGTAACCACATGACACCT 60.383 45.833 0.00 0.00 0.00 4.00
1953 2269 0.401738 AACCACATGACACCTCCTGG 59.598 55.000 0.00 0.00 39.83 4.45
1965 2281 1.503347 ACCTCCTGGGAATTTGGTGTT 59.497 47.619 0.00 0.00 38.76 3.32
1984 2300 9.845740 TTGGTGTTTTACAGTATCATATAGCAT 57.154 29.630 0.00 0.00 0.00 3.79
2069 2477 5.361427 TCAACATTCTCTGTGGTTAACGAA 58.639 37.500 0.00 0.00 38.39 3.85
2076 2484 5.475719 TCTCTGTGGTTAACGAATAGTTGG 58.524 41.667 0.00 0.00 44.01 3.77
2079 2487 6.056884 TCTGTGGTTAACGAATAGTTGGTTT 58.943 36.000 0.00 0.00 44.01 3.27
2081 2489 7.385752 TCTGTGGTTAACGAATAGTTGGTTTAG 59.614 37.037 0.00 0.00 44.01 1.85
2091 2499 7.115378 ACGAATAGTTGGTTTAGTTAAGTGTCG 59.885 37.037 0.00 0.00 0.00 4.35
2134 2542 5.184287 TCATGAGCCAATGCCAACATATATG 59.816 40.000 11.29 11.29 38.69 1.78
2145 2553 7.439157 TGCCAACATATATGAAGCAGTATTC 57.561 36.000 19.63 0.00 0.00 1.75
2151 2559 7.517320 ACATATATGAAGCAGTATTCCCACAA 58.483 34.615 19.63 0.00 0.00 3.33
2152 2560 7.445402 ACATATATGAAGCAGTATTCCCACAAC 59.555 37.037 19.63 0.00 0.00 3.32
2229 2637 1.217882 GGATTCACATAACTCGGGCG 58.782 55.000 0.00 0.00 0.00 6.13
2351 2782 3.312146 CGGTGTACTATCATGCATGCAAA 59.688 43.478 26.68 16.55 0.00 3.68
2438 2869 4.935352 AGCCTTGAGTAAACATTGCAAA 57.065 36.364 1.71 0.00 0.00 3.68
2439 2870 5.275067 AGCCTTGAGTAAACATTGCAAAA 57.725 34.783 1.71 0.00 0.00 2.44
2440 2871 5.669477 AGCCTTGAGTAAACATTGCAAAAA 58.331 33.333 1.71 0.00 0.00 1.94
2525 2956 9.403110 CATGCTTCACTTCTAAATATTAATGCC 57.597 33.333 0.00 0.00 0.00 4.40
2526 2957 8.518430 TGCTTCACTTCTAAATATTAATGCCA 57.482 30.769 0.00 0.00 0.00 4.92
2527 2958 8.623903 TGCTTCACTTCTAAATATTAATGCCAG 58.376 33.333 0.00 0.00 0.00 4.85
2528 2959 7.592903 GCTTCACTTCTAAATATTAATGCCAGC 59.407 37.037 0.00 0.00 0.00 4.85
2529 2960 8.752005 TTCACTTCTAAATATTAATGCCAGCT 57.248 30.769 0.00 0.00 0.00 4.24
2530 2961 8.383318 TCACTTCTAAATATTAATGCCAGCTC 57.617 34.615 0.00 0.00 0.00 4.09
2531 2962 7.171508 TCACTTCTAAATATTAATGCCAGCTCG 59.828 37.037 0.00 0.00 0.00 5.03
2532 2963 6.992715 ACTTCTAAATATTAATGCCAGCTCGT 59.007 34.615 0.00 0.00 0.00 4.18
2533 2964 7.171678 ACTTCTAAATATTAATGCCAGCTCGTC 59.828 37.037 0.00 0.00 0.00 4.20
2534 2965 6.521162 TCTAAATATTAATGCCAGCTCGTCA 58.479 36.000 0.00 0.00 0.00 4.35
2535 2966 6.989759 TCTAAATATTAATGCCAGCTCGTCAA 59.010 34.615 0.00 0.00 0.00 3.18
2536 2967 6.449635 AAATATTAATGCCAGCTCGTCAAA 57.550 33.333 0.00 0.00 0.00 2.69
2537 2968 6.639632 AATATTAATGCCAGCTCGTCAAAT 57.360 33.333 0.00 0.00 0.00 2.32
2674 3124 0.384309 CACAATAGCCCAGCAGCATG 59.616 55.000 0.00 0.00 40.87 4.06
2757 3209 7.156876 TGCAGAAAACAAAAGATATGGGTAG 57.843 36.000 0.00 0.00 0.00 3.18
2776 3228 6.100569 TGGGTAGATGCAGCCTATAGTAAAAA 59.899 38.462 0.00 0.00 36.99 1.94
2798 3250 7.846644 AAAAAGAATGCAAACAAACAGATGA 57.153 28.000 0.00 0.00 0.00 2.92
2859 3311 4.040461 TCACTAGGTTCTCCTGTTTTCTGG 59.960 45.833 0.00 0.00 44.81 3.86
2966 3418 5.248020 TGGCCATTTATTTGAGACATGGTTT 59.752 36.000 0.00 0.00 37.34 3.27
3013 3465 9.396022 CTATAAAGTACCAATGGTGAAGTTCAT 57.604 33.333 16.41 0.00 36.19 2.57
3180 3632 6.878389 TCTGCAAAACCAAAGATTTCTTGTTT 59.122 30.769 0.00 0.00 35.15 2.83
3222 3674 8.289618 TGATTATTGTCTTGTCAGTTACTTTGC 58.710 33.333 0.00 0.00 0.00 3.68
3272 3724 2.357009 CACTCATGCTTGCCATTACTCC 59.643 50.000 0.00 0.00 29.71 3.85
3298 3750 3.377346 TCGCTCATAGATCAGCCTTTC 57.623 47.619 0.00 0.00 31.37 2.62
3331 3783 6.543465 TGCTATGCACTATGATGCTAAGTTTT 59.457 34.615 0.00 0.00 46.28 2.43
3710 4189 6.309737 CCTTGATTGAGCTACATTTCTTTTGC 59.690 38.462 0.00 0.00 0.00 3.68
3750 4229 4.281435 TCCTGAACATACGTTGTGGTAAGA 59.719 41.667 0.00 0.00 38.99 2.10
3974 4454 3.369892 CCTGAATCGGGATTCTGTGAAGT 60.370 47.826 19.06 0.00 45.55 3.01
3991 4471 9.996554 TCTGTGAAGTGTTAGAAGAAAATCATA 57.003 29.630 0.00 0.00 0.00 2.15
4010 4492 6.576662 TCATATCTCTTACCTGATTCCGAC 57.423 41.667 0.00 0.00 0.00 4.79
4062 4544 6.554419 TCTATGCAATGAACAAACAGTATGC 58.446 36.000 0.00 0.00 42.53 3.14
4146 4636 1.203025 AGTCAGTCGTACACCTTCCCT 60.203 52.381 0.00 0.00 0.00 4.20
4156 4646 5.424252 TCGTACACCTTCCCTATTCAAGAAT 59.576 40.000 0.52 0.52 34.93 2.40
4184 4674 2.707902 GGTAGTGCATAGCCAAGCC 58.292 57.895 0.00 0.00 0.00 4.35
4185 4675 0.819666 GGTAGTGCATAGCCAAGCCC 60.820 60.000 0.00 0.00 0.00 5.19
4186 4676 0.107214 GTAGTGCATAGCCAAGCCCA 60.107 55.000 0.00 0.00 0.00 5.36
4188 4678 0.032813 AGTGCATAGCCAAGCCCATT 60.033 50.000 0.00 0.00 0.00 3.16
4190 4680 1.207811 GTGCATAGCCAAGCCCATTTT 59.792 47.619 0.00 0.00 0.00 1.82
4191 4681 1.907936 TGCATAGCCAAGCCCATTTTT 59.092 42.857 0.00 0.00 0.00 1.94
4192 4682 3.102972 TGCATAGCCAAGCCCATTTTTA 58.897 40.909 0.00 0.00 0.00 1.52
4193 4683 3.132646 TGCATAGCCAAGCCCATTTTTAG 59.867 43.478 0.00 0.00 0.00 1.85
4194 4684 3.721035 CATAGCCAAGCCCATTTTTAGC 58.279 45.455 0.00 0.00 0.00 3.09
4196 4686 1.083806 GCCAAGCCCATTTTTAGCGC 61.084 55.000 0.00 0.00 0.00 5.92
4197 4687 0.460109 CCAAGCCCATTTTTAGCGCC 60.460 55.000 2.29 0.00 0.00 6.53
4198 4688 0.246086 CAAGCCCATTTTTAGCGCCA 59.754 50.000 2.29 0.00 0.00 5.69
4199 4689 1.134729 CAAGCCCATTTTTAGCGCCAT 60.135 47.619 2.29 0.00 0.00 4.40
4200 4690 2.065899 AGCCCATTTTTAGCGCCATA 57.934 45.000 2.29 0.00 0.00 2.74
4201 4691 2.597455 AGCCCATTTTTAGCGCCATAT 58.403 42.857 2.29 0.00 0.00 1.78
4202 4692 3.761897 AGCCCATTTTTAGCGCCATATA 58.238 40.909 2.29 0.00 0.00 0.86
4203 4693 4.344104 AGCCCATTTTTAGCGCCATATAT 58.656 39.130 2.29 0.00 0.00 0.86
4204 4694 4.772100 AGCCCATTTTTAGCGCCATATATT 59.228 37.500 2.29 0.00 0.00 1.28
4205 4695 5.949354 AGCCCATTTTTAGCGCCATATATTA 59.051 36.000 2.29 0.00 0.00 0.98
4206 4696 6.607198 AGCCCATTTTTAGCGCCATATATTAT 59.393 34.615 2.29 0.00 0.00 1.28
4207 4697 6.697019 GCCCATTTTTAGCGCCATATATTATG 59.303 38.462 2.29 0.00 0.00 1.90
4208 4698 7.630513 GCCCATTTTTAGCGCCATATATTATGT 60.631 37.037 2.29 0.00 0.00 2.29
4209 4699 7.701924 CCCATTTTTAGCGCCATATATTATGTG 59.298 37.037 2.29 0.00 0.00 3.21
4248 4738 9.449719 AGAATAGTTAATTAGGTTCAAGGTGTG 57.550 33.333 0.00 0.00 0.00 3.82
4721 5246 1.271054 TGCCTCTGGAGAAGAAAGCAC 60.271 52.381 0.00 0.00 38.63 4.40
4856 5381 5.708948 TCCTTTTTGACGCTTCATATTTGG 58.291 37.500 0.00 0.00 0.00 3.28
5007 5532 1.089920 CGGAAGGACCATTGCTTGAG 58.910 55.000 0.00 0.00 38.90 3.02
5031 5556 4.553330 ACCAAACGATTACCATCAGTCT 57.447 40.909 0.00 0.00 0.00 3.24
5315 5840 1.109323 AGTTCTGTTGTTGCCCCAGC 61.109 55.000 0.00 0.00 40.48 4.85
5445 5976 1.679139 GGCCAATGATGAATCGACCA 58.321 50.000 0.00 0.00 0.00 4.02
5491 6022 1.065491 TGAATCATCCACCCGGTTCTG 60.065 52.381 0.00 0.00 0.00 3.02
5522 6053 2.158593 TGAATCTTCCACCGGGTTCAAA 60.159 45.455 6.32 0.00 34.93 2.69
5524 6055 2.194201 TCTTCCACCGGGTTCAAATC 57.806 50.000 6.32 0.00 34.93 2.17
5604 6135 1.069204 CCACCTATGAGTCATCCACCG 59.931 57.143 9.42 0.00 0.00 4.94
5802 6393 7.410174 ACTATTACAAAACCCTCATCCATCAA 58.590 34.615 0.00 0.00 0.00 2.57
5870 6461 5.126061 AGTTTGGAATGTACCATCAATCTGC 59.874 40.000 0.00 0.00 39.82 4.26
6015 6606 5.063944 AGCTAATTGCACGTTTCTACATGAG 59.936 40.000 0.00 0.00 45.94 2.90
6153 6744 9.748708 CTGTTCTTTGGTTCAATATCTTTTCAA 57.251 29.630 0.00 0.00 0.00 2.69
6217 6808 0.617820 TTGACTCCCTCCCAGTAGCC 60.618 60.000 0.00 0.00 0.00 3.93
6331 6932 5.754778 ACACCGTTATTGAAGCACTTAAAC 58.245 37.500 0.00 0.00 0.00 2.01
6344 6945 3.608474 GCACTTAAACCGTGGCTAGTTTG 60.608 47.826 9.38 0.00 36.85 2.93
6386 6987 6.337356 ACTGTTCTGGTTTTAATTTGTGTGG 58.663 36.000 0.00 0.00 0.00 4.17
6592 7238 6.048732 TGAACTATGTTATTCTCCTGTGCA 57.951 37.500 0.00 0.00 0.00 4.57
6593 7239 6.653020 TGAACTATGTTATTCTCCTGTGCAT 58.347 36.000 0.00 0.00 0.00 3.96
6594 7240 7.791029 TGAACTATGTTATTCTCCTGTGCATA 58.209 34.615 0.00 0.00 0.00 3.14
6595 7241 8.432013 TGAACTATGTTATTCTCCTGTGCATAT 58.568 33.333 0.00 0.00 0.00 1.78
6596 7242 9.277783 GAACTATGTTATTCTCCTGTGCATATT 57.722 33.333 0.00 0.00 0.00 1.28
6598 7244 9.712305 ACTATGTTATTCTCCTGTGCATATTAC 57.288 33.333 0.00 0.00 0.00 1.89
6601 7247 8.662781 TGTTATTCTCCTGTGCATATTACTTC 57.337 34.615 0.00 0.00 0.00 3.01
6604 7262 3.069586 TCTCCTGTGCATATTACTTCCCG 59.930 47.826 0.00 0.00 0.00 5.14
6845 7503 8.287503 ACACAACTAATATTCGGACTGAAAAAC 58.712 33.333 0.00 0.00 40.71 2.43
6847 7505 7.664318 ACAACTAATATTCGGACTGAAAAACCT 59.336 33.333 0.00 0.00 40.71 3.50
6852 7510 1.766496 TCGGACTGAAAAACCTGGAGT 59.234 47.619 0.00 0.00 0.00 3.85
6921 7579 8.465273 AGAAATATATGGCCTTTTTCAGTACC 57.535 34.615 3.32 0.00 0.00 3.34
6922 7580 8.058847 AGAAATATATGGCCTTTTTCAGTACCA 58.941 33.333 3.32 0.00 32.66 3.25
7048 7747 5.351465 TGGCTCGAAGAAAGTAAATCATGTC 59.649 40.000 0.00 0.00 34.09 3.06
7049 7748 5.582665 GGCTCGAAGAAAGTAAATCATGTCT 59.417 40.000 0.00 0.00 34.09 3.41
7050 7749 6.456181 GGCTCGAAGAAAGTAAATCATGTCTG 60.456 42.308 0.00 0.00 34.09 3.51
7053 7752 5.643777 CGAAGAAAGTAAATCATGTCTGGGT 59.356 40.000 0.00 0.00 0.00 4.51
7054 7753 6.183360 CGAAGAAAGTAAATCATGTCTGGGTC 60.183 42.308 0.00 0.00 0.00 4.46
7055 7754 6.380079 AGAAAGTAAATCATGTCTGGGTCT 57.620 37.500 0.00 0.00 0.00 3.85
7056 7755 6.784031 AGAAAGTAAATCATGTCTGGGTCTT 58.216 36.000 0.00 0.00 0.00 3.01
7057 7756 6.656693 AGAAAGTAAATCATGTCTGGGTCTTG 59.343 38.462 0.00 0.00 0.00 3.02
7059 7758 6.126863 AGTAAATCATGTCTGGGTCTTGAA 57.873 37.500 0.00 0.00 0.00 2.69
7060 7759 6.176183 AGTAAATCATGTCTGGGTCTTGAAG 58.824 40.000 0.00 0.00 0.00 3.02
7065 7764 5.005740 TCATGTCTGGGTCTTGAAGAAATG 58.994 41.667 0.00 0.00 37.12 2.32
7069 7771 6.542821 TGTCTGGGTCTTGAAGAAATGTAAT 58.457 36.000 0.00 0.00 0.00 1.89
7094 7796 5.455525 GCACGCCAATTTCAGAAATATGTAC 59.544 40.000 8.88 4.39 0.00 2.90
7128 7831 8.581253 AGTCTTTTTAGATATTCCAACAAGGG 57.419 34.615 0.00 0.00 38.24 3.95
7156 7859 5.415701 ACATACGGAGCAAAATGAGTGAATT 59.584 36.000 0.00 0.00 0.00 2.17
7160 7863 5.095490 CGGAGCAAAATGAGTGAATTTACC 58.905 41.667 0.00 0.00 0.00 2.85
7163 7866 6.272822 AGCAAAATGAGTGAATTTACCCTC 57.727 37.500 0.00 0.00 0.00 4.30
7210 7969 9.724839 TCGTATGTTTTTGAAACCTCTAAAAAG 57.275 29.630 0.00 0.00 37.79 2.27
7211 7970 9.724839 CGTATGTTTTTGAAACCTCTAAAAAGA 57.275 29.630 0.00 0.00 37.79 2.52
7215 7974 9.418045 TGTTTTTGAAACCTCTAAAAAGACTTG 57.582 29.630 0.00 0.00 37.79 3.16
7263 8022 0.391661 TTCTCTCCGTCTTGCATGGC 60.392 55.000 0.00 0.00 0.00 4.40
7329 8088 6.873605 TCATGAGATGTCTACATGTTTTTCGT 59.126 34.615 2.30 0.00 41.14 3.85
7356 8118 5.290158 TGTCTTCATCGCGGTTTAATTACTC 59.710 40.000 6.13 0.00 0.00 2.59
7357 8119 5.519206 GTCTTCATCGCGGTTTAATTACTCT 59.481 40.000 6.13 0.00 0.00 3.24
7378 8143 4.148871 TCTCGTACACATCGTATACGTAGC 59.851 45.833 23.67 8.41 41.81 3.58
7389 8154 1.755161 ATACGTAGCAAGTCATCGCG 58.245 50.000 0.00 0.00 0.00 5.87
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 2.268920 GGGAAGCCAGTCATCGCA 59.731 61.111 0.00 0.00 0.00 5.10
37 38 1.811266 CACGGGAAGCCAGTCATCG 60.811 63.158 0.00 0.00 27.46 3.84
63 64 0.594796 CTTGCAACGGCCAAGACAAC 60.595 55.000 2.24 0.00 40.13 3.32
144 145 6.684111 GCTGGTTCTATGATAAGCACACTACT 60.684 42.308 0.00 0.00 31.53 2.57
145 146 5.463724 GCTGGTTCTATGATAAGCACACTAC 59.536 44.000 0.00 0.00 31.53 2.73
156 157 4.965532 ACTACTTCCAGCTGGTTCTATGAT 59.034 41.667 31.58 12.33 36.34 2.45
164 165 1.550976 GTGCTACTACTTCCAGCTGGT 59.449 52.381 31.58 16.00 36.26 4.00
183 184 1.971357 AGACCGGACACTGATCAAAGT 59.029 47.619 9.46 0.00 0.00 2.66
199 200 3.050275 GGCTCAACCACGCAGACC 61.050 66.667 0.00 0.00 38.86 3.85
232 233 0.945099 GGAAATGCCTAAGCGCTACC 59.055 55.000 12.05 0.00 44.31 3.18
258 259 0.812014 TTCTGAAAGCCGCGACACAA 60.812 50.000 8.23 0.00 0.00 3.33
262 263 0.667792 AGAGTTCTGAAAGCCGCGAC 60.668 55.000 8.23 0.00 0.00 5.19
480 489 3.565482 ACTGTATTTTCAGTGTGCCTGTG 59.435 43.478 0.00 0.00 45.40 3.66
481 490 3.820557 ACTGTATTTTCAGTGTGCCTGT 58.179 40.909 0.00 0.00 45.40 4.00
482 491 5.237815 TCTACTGTATTTTCAGTGTGCCTG 58.762 41.667 9.21 0.00 46.36 4.85
483 492 5.482908 CTCTACTGTATTTTCAGTGTGCCT 58.517 41.667 9.21 0.00 46.36 4.75
503 512 1.524002 CCATCATCACGGTGGCTCT 59.476 57.895 8.50 0.00 0.00 4.09
504 513 4.131376 CCATCATCACGGTGGCTC 57.869 61.111 8.50 0.00 0.00 4.70
562 571 1.319010 CTTGTGACGACGACGACGAC 61.319 60.000 25.15 19.21 42.66 4.34
564 573 1.319010 GACTTGTGACGACGACGACG 61.319 60.000 17.60 17.60 42.66 5.12
565 574 0.995731 GGACTTGTGACGACGACGAC 60.996 60.000 15.32 8.68 42.66 4.34
566 575 1.280746 GGACTTGTGACGACGACGA 59.719 57.895 15.32 0.00 42.66 4.20
568 577 0.663568 CAGGGACTTGTGACGACGAC 60.664 60.000 0.00 0.00 34.60 4.34
569 578 1.105167 ACAGGGACTTGTGACGACGA 61.105 55.000 0.00 0.00 34.60 4.20
570 579 0.663568 GACAGGGACTTGTGACGACG 60.664 60.000 0.00 0.00 34.60 5.12
571 580 0.387929 TGACAGGGACTTGTGACGAC 59.612 55.000 0.00 0.00 34.60 4.34
572 581 1.068588 CTTGACAGGGACTTGTGACGA 59.931 52.381 0.00 0.00 34.60 4.20
573 582 1.502231 CTTGACAGGGACTTGTGACG 58.498 55.000 0.00 0.00 34.60 4.35
574 583 1.416401 TCCTTGACAGGGACTTGTGAC 59.584 52.381 1.35 0.00 41.25 3.67
575 584 1.694150 CTCCTTGACAGGGACTTGTGA 59.306 52.381 1.35 0.00 41.25 3.58
576 585 1.271054 CCTCCTTGACAGGGACTTGTG 60.271 57.143 1.35 0.00 41.25 3.33
577 586 1.059913 CCTCCTTGACAGGGACTTGT 58.940 55.000 1.35 0.00 41.25 3.16
580 589 0.907230 GCTCCTCCTTGACAGGGACT 60.907 60.000 1.35 0.00 41.25 3.85
599 609 1.668101 GGAGGCGTACTGGACAGGAG 61.668 65.000 4.14 0.00 0.00 3.69
634 644 3.556365 TGTGACAAAAACGCATTAGTCGA 59.444 39.130 0.00 0.00 32.01 4.20
643 653 3.419004 ACGTACTTTGTGACAAAAACGC 58.581 40.909 29.55 14.44 32.65 4.84
644 654 5.788467 ACTACGTACTTTGTGACAAAAACG 58.212 37.500 28.70 28.70 35.38 3.60
646 656 9.019764 GTACTACTACGTACTTTGTGACAAAAA 57.980 33.333 12.26 0.60 37.39 1.94
649 659 6.362686 CGTACTACTACGTACTTTGTGACAA 58.637 40.000 0.00 0.00 40.83 3.18
711 721 7.386978 GGCACGTAATAGTTTTACTAGTAGC 57.613 40.000 2.23 0.00 32.71 3.58
772 791 4.514066 CCCTAAGGGCAAATACGTAATCAC 59.486 45.833 0.00 0.00 35.35 3.06
773 792 4.710324 CCCTAAGGGCAAATACGTAATCA 58.290 43.478 0.00 0.00 35.35 2.57
792 811 2.074948 CCACCTATCAGCCTGCCCT 61.075 63.158 0.00 0.00 0.00 5.19
797 816 0.941963 TACCCTCCACCTATCAGCCT 59.058 55.000 0.00 0.00 0.00 4.58
815 834 4.519213 CCCGGTGTGAATTTACCAGATTA 58.481 43.478 0.00 0.00 36.76 1.75
818 837 1.612199 GCCCGGTGTGAATTTACCAGA 60.612 52.381 0.00 0.00 36.76 3.86
842 861 3.081409 CCCGACCCCGAATCCAGT 61.081 66.667 0.00 0.00 38.22 4.00
850 869 1.679559 CCTAACCTAACCCGACCCCG 61.680 65.000 0.00 0.00 0.00 5.73
867 886 1.286553 TCCCAACACAGACCAAAACCT 59.713 47.619 0.00 0.00 0.00 3.50
868 887 1.770294 TCCCAACACAGACCAAAACC 58.230 50.000 0.00 0.00 0.00 3.27
870 889 6.325028 TGATTTAATCCCAACACAGACCAAAA 59.675 34.615 2.22 0.00 0.00 2.44
873 892 4.991776 TGATTTAATCCCAACACAGACCA 58.008 39.130 2.22 0.00 0.00 4.02
877 903 6.527722 CACGATTTGATTTAATCCCAACACAG 59.472 38.462 2.22 0.00 32.12 3.66
884 910 3.550030 CCGCCACGATTTGATTTAATCCC 60.550 47.826 2.22 0.00 32.12 3.85
985 1023 0.293723 CTTATTTGTCGTCGCGTCGG 59.706 55.000 24.30 6.69 0.00 4.79
1062 1100 4.863925 GTGAGGAGGCGAGCGAGC 62.864 72.222 0.00 0.00 0.00 5.03
1063 1101 4.200283 GGTGAGGAGGCGAGCGAG 62.200 72.222 0.00 0.00 0.00 5.03
1065 1103 4.803426 GTGGTGAGGAGGCGAGCG 62.803 72.222 0.00 0.00 0.00 5.03
1066 1104 4.459089 GGTGGTGAGGAGGCGAGC 62.459 72.222 0.00 0.00 0.00 5.03
1096 1134 3.711782 AGAGGAAGGGGGAGGGGG 61.712 72.222 0.00 0.00 0.00 5.40
1098 1136 2.040359 GGAGAGGAAGGGGGAGGG 60.040 72.222 0.00 0.00 0.00 4.30
1107 1145 1.220749 CGGCGGATTTGGAGAGGAA 59.779 57.895 0.00 0.00 0.00 3.36
1111 1151 4.830765 CGGCGGCGGATTTGGAGA 62.831 66.667 25.36 0.00 0.00 3.71
1147 1187 4.810184 TTAGGCCCCTCCCCGTCC 62.810 72.222 0.00 0.00 34.51 4.79
1188 1228 3.048941 GAACGGACGGACGGGAGAG 62.049 68.421 6.00 0.00 38.39 3.20
1189 1229 3.058160 GAACGGACGGACGGGAGA 61.058 66.667 6.00 0.00 38.39 3.71
1190 1230 4.125695 GGAACGGACGGACGGGAG 62.126 72.222 6.00 0.00 38.39 4.30
1397 1450 2.287584 TGGGAGGGATGGATTGAAACT 58.712 47.619 0.00 0.00 0.00 2.66
1398 1451 2.760650 GTTGGGAGGGATGGATTGAAAC 59.239 50.000 0.00 0.00 0.00 2.78
1399 1452 2.292192 GGTTGGGAGGGATGGATTGAAA 60.292 50.000 0.00 0.00 0.00 2.69
1400 1453 1.287739 GGTTGGGAGGGATGGATTGAA 59.712 52.381 0.00 0.00 0.00 2.69
1402 1455 0.106015 GGGTTGGGAGGGATGGATTG 60.106 60.000 0.00 0.00 0.00 2.67
1403 1456 0.554865 TGGGTTGGGAGGGATGGATT 60.555 55.000 0.00 0.00 0.00 3.01
1405 1458 0.993509 GATGGGTTGGGAGGGATGGA 60.994 60.000 0.00 0.00 0.00 3.41
1406 1459 1.538666 GATGGGTTGGGAGGGATGG 59.461 63.158 0.00 0.00 0.00 3.51
1408 1461 2.078665 CGGATGGGTTGGGAGGGAT 61.079 63.158 0.00 0.00 0.00 3.85
1409 1462 2.690881 CGGATGGGTTGGGAGGGA 60.691 66.667 0.00 0.00 0.00 4.20
1412 1465 4.506255 GGGCGGATGGGTTGGGAG 62.506 72.222 0.00 0.00 0.00 4.30
1471 1776 0.734889 AGCAAATCCGAAATCCGCAG 59.265 50.000 0.00 0.00 36.84 5.18
1482 1787 3.321968 ACAAGAGGAAACCAAGCAAATCC 59.678 43.478 0.00 0.00 0.00 3.01
1498 1803 5.728351 TTAGACCGTTCAACAAACAAGAG 57.272 39.130 0.00 0.00 37.77 2.85
1501 1806 8.842280 AGATTAATTAGACCGTTCAACAAACAA 58.158 29.630 0.00 0.00 37.77 2.83
1502 1807 8.286800 CAGATTAATTAGACCGTTCAACAAACA 58.713 33.333 0.00 0.00 37.77 2.83
1515 1821 5.481472 CACGCAACGACAGATTAATTAGAC 58.519 41.667 0.00 0.00 0.00 2.59
1516 1822 4.565166 CCACGCAACGACAGATTAATTAGA 59.435 41.667 0.00 0.00 0.00 2.10
1517 1823 4.328983 ACCACGCAACGACAGATTAATTAG 59.671 41.667 0.00 0.00 0.00 1.73
1518 1824 4.247258 ACCACGCAACGACAGATTAATTA 58.753 39.130 0.00 0.00 0.00 1.40
1520 1826 2.695359 ACCACGCAACGACAGATTAAT 58.305 42.857 0.00 0.00 0.00 1.40
1540 1846 2.061028 CATACAGCAAGATCGCGCATA 58.939 47.619 8.75 0.00 36.85 3.14
1543 1849 0.875908 TCCATACAGCAAGATCGCGC 60.876 55.000 0.00 0.00 36.85 6.86
1546 1852 1.723542 GCGATCCATACAGCAAGATCG 59.276 52.381 14.95 14.95 0.00 3.69
1547 1853 3.037431 AGCGATCCATACAGCAAGATC 57.963 47.619 0.00 0.00 0.00 2.75
1548 1854 3.482156 AAGCGATCCATACAGCAAGAT 57.518 42.857 0.00 0.00 0.00 2.40
1549 1855 2.988010 AAGCGATCCATACAGCAAGA 57.012 45.000 0.00 0.00 0.00 3.02
1551 1857 3.081061 ACAAAAGCGATCCATACAGCAA 58.919 40.909 0.00 0.00 0.00 3.91
1553 1859 3.764885 AACAAAAGCGATCCATACAGC 57.235 42.857 0.00 0.00 0.00 4.40
1554 1860 5.460646 ACAAAACAAAAGCGATCCATACAG 58.539 37.500 0.00 0.00 0.00 2.74
1556 1862 6.149633 AGAACAAAACAAAAGCGATCCATAC 58.850 36.000 0.00 0.00 0.00 2.39
1558 1864 5.010012 AGAGAACAAAACAAAAGCGATCCAT 59.990 36.000 0.00 0.00 0.00 3.41
1559 1865 4.338118 AGAGAACAAAACAAAAGCGATCCA 59.662 37.500 0.00 0.00 0.00 3.41
1560 1866 4.860072 AGAGAACAAAACAAAAGCGATCC 58.140 39.130 0.00 0.00 0.00 3.36
1561 1867 6.812481 AAAGAGAACAAAACAAAAGCGATC 57.188 33.333 0.00 0.00 0.00 3.69
1562 1868 6.811170 TCAAAAGAGAACAAAACAAAAGCGAT 59.189 30.769 0.00 0.00 0.00 4.58
1564 1870 6.307800 TCTCAAAAGAGAACAAAACAAAAGCG 59.692 34.615 0.00 0.00 0.00 4.68
1576 1882 4.493872 GCATCTCGCATCTCAAAAGAGAAC 60.494 45.833 0.00 0.00 40.72 3.01
1606 1912 1.810959 TGTTTTTATACACGGCGGCT 58.189 45.000 13.24 0.00 0.00 5.52
1607 1913 2.615489 TTGTTTTTATACACGGCGGC 57.385 45.000 13.24 0.00 0.00 6.53
1608 1914 2.903707 CGTTTGTTTTTATACACGGCGG 59.096 45.455 13.24 2.35 0.00 6.13
1610 1916 5.282076 GTCATCGTTTGTTTTTATACACGGC 59.718 40.000 0.00 0.00 0.00 5.68
1611 1917 5.502004 CGTCATCGTTTGTTTTTATACACGG 59.498 40.000 0.00 0.00 0.00 4.94
1612 1918 6.290643 TCGTCATCGTTTGTTTTTATACACG 58.709 36.000 0.00 0.00 38.33 4.49
1617 1923 5.694816 TGCATCGTCATCGTTTGTTTTTAT 58.305 33.333 0.00 0.00 38.33 1.40
1618 1924 5.096954 TGCATCGTCATCGTTTGTTTTTA 57.903 34.783 0.00 0.00 38.33 1.52
1619 1925 3.958704 TGCATCGTCATCGTTTGTTTTT 58.041 36.364 0.00 0.00 38.33 1.94
1637 1943 4.308526 TGGGATACAAAACCTACATGCA 57.691 40.909 0.00 0.00 39.74 3.96
1642 1948 3.560068 CGCTCATGGGATACAAAACCTAC 59.440 47.826 0.00 0.00 39.74 3.18
1657 1967 0.598419 TCTATTCCGCTGCGCTCATG 60.598 55.000 18.00 2.33 0.00 3.07
1692 2002 1.646540 CGCCAAGTTTGCAGAACGA 59.353 52.632 0.00 0.00 0.00 3.85
1712 2022 3.057548 TCAGCACCGCCAGCAATG 61.058 61.111 0.00 0.00 0.00 2.82
1723 2033 3.490759 CGGCATCCGTGTCAGCAC 61.491 66.667 0.00 0.00 42.73 4.40
1743 2053 4.792057 GCACTGAATTTATCTGCCATGAGC 60.792 45.833 0.00 0.00 44.14 4.26
1744 2054 4.554134 CGCACTGAATTTATCTGCCATGAG 60.554 45.833 0.00 0.00 0.00 2.90
1745 2055 3.313249 CGCACTGAATTTATCTGCCATGA 59.687 43.478 0.00 0.00 0.00 3.07
1747 2057 2.033801 GCGCACTGAATTTATCTGCCAT 59.966 45.455 0.30 0.00 0.00 4.40
1748 2058 1.401552 GCGCACTGAATTTATCTGCCA 59.598 47.619 0.30 0.00 0.00 4.92
1749 2059 1.595489 CGCGCACTGAATTTATCTGCC 60.595 52.381 8.75 0.00 0.00 4.85
1750 2060 1.595489 CCGCGCACTGAATTTATCTGC 60.595 52.381 8.75 0.00 0.00 4.26
1751 2061 1.665679 ACCGCGCACTGAATTTATCTG 59.334 47.619 8.75 0.00 0.00 2.90
1752 2062 2.024176 ACCGCGCACTGAATTTATCT 57.976 45.000 8.75 0.00 0.00 1.98
1753 2063 2.825086 AACCGCGCACTGAATTTATC 57.175 45.000 8.75 0.00 0.00 1.75
1758 2073 2.168054 GGTTAACCGCGCACTGAAT 58.832 52.632 9.34 0.00 0.00 2.57
1802 2117 2.303022 AGATATATGCAGGGGTGGTTCG 59.697 50.000 0.00 0.00 0.00 3.95
1807 2122 5.682234 TGATACAGATATATGCAGGGGTG 57.318 43.478 0.00 0.00 0.00 4.61
1811 2126 6.656270 TGCCTTTTGATACAGATATATGCAGG 59.344 38.462 0.00 0.00 0.00 4.85
1820 2135 5.378230 TCCTGATGCCTTTTGATACAGAT 57.622 39.130 0.00 0.00 0.00 2.90
1860 2175 7.934855 ATTACAAGTTCTGATTTGCTCATCT 57.065 32.000 3.25 0.00 32.10 2.90
1861 2176 9.661187 CATATTACAAGTTCTGATTTGCTCATC 57.339 33.333 3.25 0.00 32.10 2.92
1862 2177 9.399797 TCATATTACAAGTTCTGATTTGCTCAT 57.600 29.630 3.25 0.00 32.10 2.90
1863 2178 8.791327 TCATATTACAAGTTCTGATTTGCTCA 57.209 30.769 3.25 0.00 0.00 4.26
1871 2186 9.671279 ACACATCATTCATATTACAAGTTCTGA 57.329 29.630 0.00 0.00 0.00 3.27
1872 2187 9.712359 CACACATCATTCATATTACAAGTTCTG 57.288 33.333 0.00 0.00 0.00 3.02
1873 2188 8.896744 CCACACATCATTCATATTACAAGTTCT 58.103 33.333 0.00 0.00 0.00 3.01
1875 2190 8.806429 TCCACACATCATTCATATTACAAGTT 57.194 30.769 0.00 0.00 0.00 2.66
1877 2192 8.676401 TGTTCCACACATCATTCATATTACAAG 58.324 33.333 0.00 0.00 0.00 3.16
1878 2193 8.572855 TGTTCCACACATCATTCATATTACAA 57.427 30.769 0.00 0.00 0.00 2.41
1895 2210 5.068329 TGCATATTTTGTCAAGTGTTCCACA 59.932 36.000 0.00 0.00 36.74 4.17
1899 2214 8.430063 CAATCTTGCATATTTTGTCAAGTGTTC 58.570 33.333 0.00 0.00 38.98 3.18
1937 2253 0.692476 TTCCCAGGAGGTGTCATGTG 59.308 55.000 0.00 0.00 32.31 3.21
1948 2264 4.547671 TGTAAAACACCAAATTCCCAGGA 58.452 39.130 0.00 0.00 0.00 3.86
2069 2477 9.148104 GAATCGACACTTAACTAAACCAACTAT 57.852 33.333 0.00 0.00 0.00 2.12
2079 2487 9.309516 GGATAATGTTGAATCGACACTTAACTA 57.690 33.333 5.31 0.00 29.85 2.24
2081 2489 8.116753 CAGGATAATGTTGAATCGACACTTAAC 58.883 37.037 5.31 5.38 29.85 2.01
2091 2499 7.646922 GCTCATGAAACAGGATAATGTTGAATC 59.353 37.037 0.00 0.00 42.49 2.52
2134 2542 6.498304 CATAATGTTGTGGGAATACTGCTTC 58.502 40.000 0.00 0.00 0.00 3.86
2145 2553 5.693104 GCAATATTCAGCATAATGTTGTGGG 59.307 40.000 16.37 0.00 39.08 4.61
2151 2559 6.207417 GGTGGTAGCAATATTCAGCATAATGT 59.793 38.462 0.00 0.00 0.00 2.71
2152 2560 6.432162 AGGTGGTAGCAATATTCAGCATAATG 59.568 38.462 0.00 0.00 0.00 1.90
2229 2637 5.043248 AGCAAGAAAAATGTAACTGCACAC 58.957 37.500 0.00 0.00 0.00 3.82
2351 2782 1.417517 TCAGCCATCAGTGACAGTGTT 59.582 47.619 10.07 0.00 0.00 3.32
2439 2870 6.218019 GGTAACAACTCCCGCTTAAATTTTT 58.782 36.000 0.00 0.00 0.00 1.94
2440 2871 5.279106 GGGTAACAACTCCCGCTTAAATTTT 60.279 40.000 0.00 0.00 39.74 1.82
2441 2872 4.219070 GGGTAACAACTCCCGCTTAAATTT 59.781 41.667 0.00 0.00 39.74 1.82
2442 2873 3.760151 GGGTAACAACTCCCGCTTAAATT 59.240 43.478 0.00 0.00 39.74 1.82
2443 2874 3.349927 GGGTAACAACTCCCGCTTAAAT 58.650 45.455 0.00 0.00 39.74 1.40
2514 2945 6.639632 ATTTGACGAGCTGGCATTAATATT 57.360 33.333 0.00 0.00 0.00 1.28
2518 2949 5.588246 TGATAATTTGACGAGCTGGCATTAA 59.412 36.000 0.00 0.00 0.00 1.40
2519 2950 5.007626 GTGATAATTTGACGAGCTGGCATTA 59.992 40.000 0.00 0.00 0.00 1.90
2520 2951 3.947196 TGATAATTTGACGAGCTGGCATT 59.053 39.130 0.00 0.00 0.00 3.56
2521 2952 3.313526 GTGATAATTTGACGAGCTGGCAT 59.686 43.478 0.00 0.00 0.00 4.40
2522 2953 2.677836 GTGATAATTTGACGAGCTGGCA 59.322 45.455 0.00 0.00 0.00 4.92
2523 2954 2.939103 AGTGATAATTTGACGAGCTGGC 59.061 45.455 0.00 0.00 0.00 4.85
2524 2955 3.935203 ACAGTGATAATTTGACGAGCTGG 59.065 43.478 0.00 0.00 0.00 4.85
2525 2956 4.867047 AGACAGTGATAATTTGACGAGCTG 59.133 41.667 0.00 0.00 0.00 4.24
2526 2957 4.867047 CAGACAGTGATAATTTGACGAGCT 59.133 41.667 0.00 0.00 0.00 4.09
2527 2958 4.627467 ACAGACAGTGATAATTTGACGAGC 59.373 41.667 0.00 0.00 0.00 5.03
2528 2959 6.096036 AGACAGACAGTGATAATTTGACGAG 58.904 40.000 0.00 0.00 0.00 4.18
2529 2960 6.025749 AGACAGACAGTGATAATTTGACGA 57.974 37.500 0.00 0.00 0.00 4.20
2530 2961 6.806739 TGTAGACAGACAGTGATAATTTGACG 59.193 38.462 0.00 0.00 0.00 4.35
2531 2962 7.598869 TGTGTAGACAGACAGTGATAATTTGAC 59.401 37.037 0.00 0.00 0.00 3.18
2532 2963 7.666623 TGTGTAGACAGACAGTGATAATTTGA 58.333 34.615 0.00 0.00 0.00 2.69
2533 2964 7.889589 TGTGTAGACAGACAGTGATAATTTG 57.110 36.000 0.00 0.00 0.00 2.32
2534 2965 8.902540 TTTGTGTAGACAGACAGTGATAATTT 57.097 30.769 0.00 0.00 32.26 1.82
2535 2966 9.507329 AATTTGTGTAGACAGACAGTGATAATT 57.493 29.630 0.00 0.00 32.26 1.40
2537 2968 9.990360 TTAATTTGTGTAGACAGACAGTGATAA 57.010 29.630 0.00 0.00 32.26 1.75
2674 3124 2.640316 ACCAGTCCTCCAGAACAAAC 57.360 50.000 0.00 0.00 0.00 2.93
2776 3228 6.256321 GTGTCATCTGTTTGTTTGCATTCTTT 59.744 34.615 0.00 0.00 0.00 2.52
2859 3311 5.169836 ACAGGACAAACATCGTTCTTTTC 57.830 39.130 0.00 0.00 0.00 2.29
3013 3465 6.466812 TCTCATGCTGAACAGATGAGTAAAA 58.533 36.000 24.82 14.36 40.24 1.52
3180 3632 8.109705 ACAATAATCAAGCAATGACAAGTACA 57.890 30.769 0.00 0.00 41.93 2.90
3272 3724 4.514441 AGGCTGATCTATGAGCGAAAAATG 59.486 41.667 0.00 0.00 37.94 2.32
3331 3783 7.363880 GGAGTCAATGACTAGACTTATCAACCA 60.364 40.741 16.71 0.00 43.53 3.67
3408 3866 3.763097 TTTCCTGTTATCGCAAGCATG 57.237 42.857 0.00 0.00 37.18 4.06
3502 3969 6.311200 GCTTTCAACAACAGACACTGAAAATT 59.689 34.615 5.76 0.00 36.03 1.82
3514 3981 4.142403 TGAAGTGAAGGCTTTCAACAACAG 60.142 41.667 13.42 0.00 44.49 3.16
3850 4329 4.334759 CAGGGCACTCTGATATCAAACAAG 59.665 45.833 6.90 4.95 36.93 3.16
3991 4471 7.604657 ATTTAGTCGGAATCAGGTAAGAGAT 57.395 36.000 0.00 0.00 0.00 2.75
4062 4544 7.202526 AGCCAATGTTTATGGACAAATAATCG 58.797 34.615 0.00 0.00 40.56 3.34
4174 4664 2.362077 CGCTAAAAATGGGCTTGGCTAT 59.638 45.455 0.00 0.00 0.00 2.97
4175 4665 1.748493 CGCTAAAAATGGGCTTGGCTA 59.252 47.619 0.00 0.00 0.00 3.93
4176 4666 0.532115 CGCTAAAAATGGGCTTGGCT 59.468 50.000 0.00 0.00 0.00 4.75
4177 4667 1.083806 GCGCTAAAAATGGGCTTGGC 61.084 55.000 0.00 0.00 39.74 4.52
4178 4668 0.460109 GGCGCTAAAAATGGGCTTGG 60.460 55.000 7.64 0.00 42.03 3.61
4179 4669 0.246086 TGGCGCTAAAAATGGGCTTG 59.754 50.000 7.64 0.00 42.03 4.01
4180 4670 1.194218 ATGGCGCTAAAAATGGGCTT 58.806 45.000 7.64 0.00 42.03 4.35
4181 4671 2.065899 TATGGCGCTAAAAATGGGCT 57.934 45.000 7.64 0.00 42.03 5.19
4182 4672 4.718940 ATATATGGCGCTAAAAATGGGC 57.281 40.909 7.64 0.00 41.70 5.36
4183 4673 7.701924 CACATAATATATGGCGCTAAAAATGGG 59.298 37.037 7.64 0.00 0.00 4.00
4184 4674 8.243426 ACACATAATATATGGCGCTAAAAATGG 58.757 33.333 7.64 0.00 0.00 3.16
4185 4675 9.277565 GACACATAATATATGGCGCTAAAAATG 57.722 33.333 7.64 4.02 0.00 2.32
4186 4676 9.008965 TGACACATAATATATGGCGCTAAAAAT 57.991 29.630 7.64 0.00 0.00 1.82
4188 4678 7.659799 ACTGACACATAATATATGGCGCTAAAA 59.340 33.333 7.64 0.00 0.00 1.52
4190 4680 6.697395 ACTGACACATAATATATGGCGCTAA 58.303 36.000 7.64 0.00 0.00 3.09
4191 4681 6.280855 ACTGACACATAATATATGGCGCTA 57.719 37.500 7.64 0.00 0.00 4.26
4192 4682 5.152623 ACTGACACATAATATATGGCGCT 57.847 39.130 7.64 0.00 0.00 5.92
4193 4683 4.330074 GGACTGACACATAATATATGGCGC 59.670 45.833 0.00 0.00 0.00 6.53
4194 4684 5.578336 CAGGACTGACACATAATATATGGCG 59.422 44.000 0.00 0.00 0.00 5.69
4196 4686 8.588472 TCTTCAGGACTGACACATAATATATGG 58.412 37.037 0.67 0.00 39.66 2.74
4197 4687 9.636879 CTCTTCAGGACTGACACATAATATATG 57.363 37.037 0.67 0.00 39.66 1.78
4198 4688 9.593565 TCTCTTCAGGACTGACACATAATATAT 57.406 33.333 0.67 0.00 39.66 0.86
4199 4689 8.996651 TCTCTTCAGGACTGACACATAATATA 57.003 34.615 0.67 0.00 39.66 0.86
4200 4690 7.904558 TCTCTTCAGGACTGACACATAATAT 57.095 36.000 0.67 0.00 39.66 1.28
4201 4691 7.718334 TTCTCTTCAGGACTGACACATAATA 57.282 36.000 0.67 0.00 39.66 0.98
4202 4692 6.611613 TTCTCTTCAGGACTGACACATAAT 57.388 37.500 0.67 0.00 39.66 1.28
4203 4693 6.611613 ATTCTCTTCAGGACTGACACATAA 57.388 37.500 0.67 0.00 39.66 1.90
4204 4694 6.892456 ACTATTCTCTTCAGGACTGACACATA 59.108 38.462 0.67 0.00 39.66 2.29
4205 4695 5.719085 ACTATTCTCTTCAGGACTGACACAT 59.281 40.000 0.67 0.00 39.66 3.21
4206 4696 5.080337 ACTATTCTCTTCAGGACTGACACA 58.920 41.667 0.67 0.00 39.66 3.72
4207 4697 5.652994 ACTATTCTCTTCAGGACTGACAC 57.347 43.478 0.67 0.00 39.66 3.67
4208 4698 7.776618 TTAACTATTCTCTTCAGGACTGACA 57.223 36.000 0.67 0.00 39.66 3.58
4686 5211 3.854856 GCAAGGTGCCAGTTTGGA 58.145 55.556 0.00 0.00 40.96 3.53
4721 5246 4.631377 TCTCATTTTGTACAGCAATCTCCG 59.369 41.667 0.00 0.00 36.89 4.63
4856 5381 7.496529 TGGCACAAAGAGCTTATATGAATAC 57.503 36.000 0.00 0.00 31.92 1.89
5007 5532 3.190535 ACTGATGGTAATCGTTTGGTTGC 59.809 43.478 0.00 0.00 35.37 4.17
5031 5556 2.407562 TCTGCAGGGCCATAGTTATCA 58.592 47.619 15.13 0.00 0.00 2.15
5491 6022 3.471680 GTGGAAGATTCATAGCTGGACC 58.528 50.000 0.00 0.00 0.00 4.46
5522 6053 2.560542 GGTCGATGACTCATAGCTGGAT 59.439 50.000 0.00 0.00 32.47 3.41
5524 6055 1.683385 TGGTCGATGACTCATAGCTGG 59.317 52.381 0.00 0.00 32.47 4.85
5604 6135 4.200092 GACTCATAGGTGGATTTGAACCC 58.800 47.826 0.00 0.00 37.13 4.11
5802 6393 1.681666 CTGCCTCTCACCACCATGT 59.318 57.895 0.00 0.00 0.00 3.21
5870 6461 5.104109 TCAATACCATTAGTTTGGGGAGGAG 60.104 44.000 0.00 0.00 41.35 3.69
6153 6744 6.876155 TGCAATATTTACTGAACCATGCATT 58.124 32.000 0.00 0.00 0.00 3.56
6217 6808 4.526970 TGGCTATAAAAAGGAGAAGGCAG 58.473 43.478 0.00 0.00 34.98 4.85
6244 6837 6.394345 AAGTATTTCCCTTCCAGAACATCT 57.606 37.500 0.00 0.00 0.00 2.90
6245 6838 6.685527 GAAGTATTTCCCTTCCAGAACATC 57.314 41.667 0.00 0.00 33.70 3.06
6331 6932 0.729116 CAGCATCAAACTAGCCACGG 59.271 55.000 0.00 0.00 0.00 4.94
6344 6945 1.134965 AGTCTCCACTAACGCAGCATC 60.135 52.381 0.00 0.00 0.00 3.91
6563 7209 9.793259 ACAGGAGAATAACATAGTTCAAAGAAA 57.207 29.630 0.00 0.00 0.00 2.52
6566 7212 7.119699 TGCACAGGAGAATAACATAGTTCAAAG 59.880 37.037 0.00 0.00 0.00 2.77
6595 7241 9.118300 TGACTAAATTAAAACAACGGGAAGTAA 57.882 29.630 0.00 0.00 0.00 2.24
6596 7242 8.674263 TGACTAAATTAAAACAACGGGAAGTA 57.326 30.769 0.00 0.00 0.00 2.24
6597 7243 7.571080 TGACTAAATTAAAACAACGGGAAGT 57.429 32.000 0.00 0.00 0.00 3.01
6598 7244 6.581166 GCTGACTAAATTAAAACAACGGGAAG 59.419 38.462 0.00 0.00 0.00 3.46
6600 7246 5.531659 TGCTGACTAAATTAAAACAACGGGA 59.468 36.000 0.00 0.00 0.00 5.14
6601 7247 5.764131 TGCTGACTAAATTAAAACAACGGG 58.236 37.500 0.00 0.00 0.00 5.28
6812 7470 8.287503 AGTCCGAATATTAGTTGTGTTTGAAAC 58.712 33.333 0.14 0.14 0.00 2.78
6845 7503 9.319143 CTTCACAAAATATCTACTTACTCCAGG 57.681 37.037 0.00 0.00 0.00 4.45
6847 7505 9.871238 GACTTCACAAAATATCTACTTACTCCA 57.129 33.333 0.00 0.00 0.00 3.86
6897 7555 8.232913 TGGTACTGAAAAAGGCCATATATTTC 57.767 34.615 5.01 8.51 32.31 2.17
6907 7565 7.870445 TGATACAAATTTGGTACTGAAAAAGGC 59.130 33.333 21.74 0.00 0.00 4.35
7029 7728 5.643777 ACCCAGACATGATTTACTTTCTTCG 59.356 40.000 0.00 0.00 0.00 3.79
7048 7747 5.183713 TGCATTACATTTCTTCAAGACCCAG 59.816 40.000 0.00 0.00 0.00 4.45
7049 7748 5.048083 GTGCATTACATTTCTTCAAGACCCA 60.048 40.000 0.00 0.00 0.00 4.51
7050 7749 5.402398 GTGCATTACATTTCTTCAAGACCC 58.598 41.667 0.00 0.00 0.00 4.46
7053 7752 4.379394 GGCGTGCATTACATTTCTTCAAGA 60.379 41.667 0.00 0.00 0.00 3.02
7054 7753 3.853671 GGCGTGCATTACATTTCTTCAAG 59.146 43.478 0.00 0.00 0.00 3.02
7055 7754 3.254411 TGGCGTGCATTACATTTCTTCAA 59.746 39.130 0.00 0.00 0.00 2.69
7056 7755 2.816672 TGGCGTGCATTACATTTCTTCA 59.183 40.909 0.00 0.00 0.00 3.02
7057 7756 3.485947 TGGCGTGCATTACATTTCTTC 57.514 42.857 0.00 0.00 0.00 2.87
7059 7758 4.454728 AATTGGCGTGCATTACATTTCT 57.545 36.364 0.00 0.00 0.00 2.52
7060 7759 4.624882 TGAAATTGGCGTGCATTACATTTC 59.375 37.500 11.48 11.48 32.65 2.17
7065 7764 3.485947 TCTGAAATTGGCGTGCATTAC 57.514 42.857 0.00 0.00 0.00 1.89
7069 7771 4.082300 ACATATTTCTGAAATTGGCGTGCA 60.082 37.500 19.68 1.15 32.38 4.57
7115 7818 5.163385 CCGTATGTAGTCCCTTGTTGGAATA 60.163 44.000 0.00 0.00 35.80 1.75
7128 7831 5.005779 CACTCATTTTGCTCCGTATGTAGTC 59.994 44.000 0.00 0.00 0.00 2.59
7210 7969 6.014840 TCCCTCCGTTTCCATATATACAAGTC 60.015 42.308 0.00 0.00 0.00 3.01
7211 7970 5.842328 TCCCTCCGTTTCCATATATACAAGT 59.158 40.000 0.00 0.00 0.00 3.16
7212 7971 6.014499 ACTCCCTCCGTTTCCATATATACAAG 60.014 42.308 0.00 0.00 0.00 3.16
7213 7972 5.842328 ACTCCCTCCGTTTCCATATATACAA 59.158 40.000 0.00 0.00 0.00 2.41
7214 7973 5.399991 ACTCCCTCCGTTTCCATATATACA 58.600 41.667 0.00 0.00 0.00 2.29
7215 7974 5.997384 ACTCCCTCCGTTTCCATATATAC 57.003 43.478 0.00 0.00 0.00 1.47
7221 7980 2.544844 TCTACTCCCTCCGTTTCCAT 57.455 50.000 0.00 0.00 0.00 3.41
7223 7982 3.908643 AAATCTACTCCCTCCGTTTCC 57.091 47.619 0.00 0.00 0.00 3.13
7263 8022 3.760035 CGTCCGGGTGAGGGTGAG 61.760 72.222 0.00 0.00 0.00 3.51
7329 8088 2.093306 AAACCGCGATGAAGACATGA 57.907 45.000 8.23 0.00 36.82 3.07
7378 8143 3.432759 CATGCATCGCGATGACTTG 57.567 52.632 44.20 34.21 41.20 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.