Multiple sequence alignment - TraesCS2B01G519500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G519500 chr2B 100.000 5858 0 0 1 5858 714491188 714497045 0.000000e+00 10818.0
1 TraesCS2B01G519500 chr2B 86.182 1100 138 10 3762 4856 788841827 788840737 0.000000e+00 1177.0
2 TraesCS2B01G519500 chr2B 85.621 306 29 12 1681 1975 421793 422094 2.050000e-79 307.0
3 TraesCS2B01G519500 chr2B 84.641 306 32 12 1681 1975 422870 423171 2.070000e-74 291.0
4 TraesCS2B01G519500 chr2B 76.438 365 77 7 984 1344 788844176 788843817 7.750000e-44 189.0
5 TraesCS2B01G519500 chr2B 100.000 29 0 0 3514 3542 734397859 734397887 3.000000e-03 54.7
6 TraesCS2B01G519500 chr2D 97.708 2661 60 1 1976 4635 590064147 590066807 0.000000e+00 4575.0
7 TraesCS2B01G519500 chr2D 96.183 917 33 2 638 1553 590063234 590064149 0.000000e+00 1498.0
8 TraesCS2B01G519500 chr2D 77.290 2096 400 62 2789 4837 646489558 646491624 0.000000e+00 1164.0
9 TraesCS2B01G519500 chr2D 95.785 522 17 2 1 517 590062709 590063230 0.000000e+00 837.0
10 TraesCS2B01G519500 chr2D 86.082 582 33 23 4661 5232 590066806 590067349 3.040000e-162 582.0
11 TraesCS2B01G519500 chr2D 82.878 403 26 23 5488 5858 590067394 590067785 7.320000e-84 322.0
12 TraesCS2B01G519500 chr2D 84.388 237 20 9 5473 5708 590037478 590037698 3.550000e-52 217.0
13 TraesCS2B01G519500 chr2D 76.667 360 76 6 989 1344 646488183 646488538 5.990000e-45 193.0
14 TraesCS2B01G519500 chr2A 96.702 2668 80 1 1976 4635 724369187 724371854 0.000000e+00 4433.0
15 TraesCS2B01G519500 chr2A 96.087 920 33 3 636 1553 724368271 724369189 0.000000e+00 1496.0
16 TraesCS2B01G519500 chr2A 95.393 521 19 2 3 518 724367749 724368269 0.000000e+00 824.0
17 TraesCS2B01G519500 chr2A 89.815 324 17 9 4661 4968 724371853 724372176 9.140000e-108 401.0
18 TraesCS2B01G519500 chr2A 88.820 161 9 2 5680 5831 724372636 724372796 7.750000e-44 189.0
19 TraesCS2B01G519500 chr2A 86.957 92 11 1 5563 5653 724372551 724372642 1.040000e-17 102.0
20 TraesCS2B01G519500 chr6A 75.846 1921 418 40 2935 4830 522056462 522058361 0.000000e+00 935.0
21 TraesCS2B01G519500 chr6D 76.540 1786 362 44 3067 4823 380570340 380572097 0.000000e+00 924.0
22 TraesCS2B01G519500 chr6D 91.270 126 11 0 519 644 430998582 430998457 7.800000e-39 172.0
23 TraesCS2B01G519500 chr6D 91.200 125 11 0 519 643 471326718 471326594 2.810000e-38 171.0
24 TraesCS2B01G519500 chr6B 81.495 1070 180 16 3762 4823 567850729 567851788 0.000000e+00 863.0
25 TraesCS2B01G519500 chr6B 78.678 1074 206 17 3762 4823 5768931 5769993 0.000000e+00 693.0
26 TraesCS2B01G519500 chr6B 91.045 134 11 1 513 645 179700409 179700542 4.660000e-41 180.0
27 TraesCS2B01G519500 chr6B 86.047 172 16 7 1807 1975 42197903 42198069 1.680000e-40 178.0
28 TraesCS2B01G519500 chr6B 100.000 29 0 0 3514 3542 64687812 64687784 3.000000e-03 54.7
29 TraesCS2B01G519500 chr4D 80.333 900 162 10 3411 4301 503673264 503672371 0.000000e+00 667.0
30 TraesCS2B01G519500 chr4D 78.886 341 59 7 4496 4825 503672380 503672042 9.880000e-53 219.0
31 TraesCS2B01G519500 chr4A 92.000 425 21 9 1556 1975 644443855 644444271 8.460000e-163 584.0
32 TraesCS2B01G519500 chr4A 92.512 414 18 9 1556 1964 644445184 644445589 1.090000e-161 580.0
33 TraesCS2B01G519500 chr3B 89.227 427 35 10 1556 1976 30516274 30516695 1.870000e-144 523.0
34 TraesCS2B01G519500 chr7B 84.211 304 36 10 1681 1975 696918247 696918547 9.610000e-73 285.0
35 TraesCS2B01G519500 chr7B 85.311 177 16 9 1803 1975 613233782 613233612 2.170000e-39 174.0
36 TraesCS2B01G519500 chr5D 83.025 324 34 17 1662 1975 429496847 429496535 2.080000e-69 274.0
37 TraesCS2B01G519500 chr5D 89.024 164 13 5 1662 1824 429563395 429563236 1.290000e-46 198.0
38 TraesCS2B01G519500 chr1B 92.913 127 7 2 518 643 581203991 581203866 3.610000e-42 183.0
39 TraesCS2B01G519500 chr1B 94.017 117 7 0 521 637 677378378 677378494 1.680000e-40 178.0
40 TraesCS2B01G519500 chr5B 93.333 120 8 0 519 638 173271475 173271594 1.680000e-40 178.0
41 TraesCS2B01G519500 chr5B 91.270 126 9 2 520 644 629275235 629275111 2.810000e-38 171.0
42 TraesCS2B01G519500 chr7A 86.047 172 14 7 1812 1975 403365521 403365690 6.030000e-40 176.0
43 TraesCS2B01G519500 chr7D 92.562 121 9 0 521 641 600970970 600971090 2.170000e-39 174.0
44 TraesCS2B01G519500 chrUn 97.980 99 2 0 1606 1704 21945243 21945145 7.800000e-39 172.0
45 TraesCS2B01G519500 chrUn 100.000 29 0 0 3514 3542 94838219 94838247 3.000000e-03 54.7
46 TraesCS2B01G519500 chrUn 83.929 56 9 0 3487 3542 101629003 101629058 3.000000e-03 54.7
47 TraesCS2B01G519500 chr4B 90.625 128 11 1 521 647 108500806 108500679 1.010000e-37 169.0
48 TraesCS2B01G519500 chr4B 100.000 29 0 0 3514 3542 650657786 650657814 3.000000e-03 54.7
49 TraesCS2B01G519500 chr5A 100.000 29 0 0 3514 3542 688717061 688717089 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G519500 chr2B 714491188 714497045 5857 False 10818.000000 10818 100.000000 1 5858 1 chr2B.!!$F1 5857
1 TraesCS2B01G519500 chr2B 788840737 788844176 3439 True 683.000000 1177 81.310000 984 4856 2 chr2B.!!$R1 3872
2 TraesCS2B01G519500 chr2B 421793 423171 1378 False 299.000000 307 85.131000 1681 1975 2 chr2B.!!$F3 294
3 TraesCS2B01G519500 chr2D 590062709 590067785 5076 False 1562.800000 4575 91.727200 1 5858 5 chr2D.!!$F2 5857
4 TraesCS2B01G519500 chr2D 646488183 646491624 3441 False 678.500000 1164 76.978500 989 4837 2 chr2D.!!$F3 3848
5 TraesCS2B01G519500 chr2A 724367749 724372796 5047 False 1240.833333 4433 92.295667 3 5831 6 chr2A.!!$F1 5828
6 TraesCS2B01G519500 chr6A 522056462 522058361 1899 False 935.000000 935 75.846000 2935 4830 1 chr6A.!!$F1 1895
7 TraesCS2B01G519500 chr6D 380570340 380572097 1757 False 924.000000 924 76.540000 3067 4823 1 chr6D.!!$F1 1756
8 TraesCS2B01G519500 chr6B 567850729 567851788 1059 False 863.000000 863 81.495000 3762 4823 1 chr6B.!!$F4 1061
9 TraesCS2B01G519500 chr6B 5768931 5769993 1062 False 693.000000 693 78.678000 3762 4823 1 chr6B.!!$F1 1061
10 TraesCS2B01G519500 chr4D 503672042 503673264 1222 True 443.000000 667 79.609500 3411 4825 2 chr4D.!!$R1 1414
11 TraesCS2B01G519500 chr4A 644443855 644445589 1734 False 582.000000 584 92.256000 1556 1975 2 chr4A.!!$F1 419

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
624 632 0.030369 CCTCCGACGAGTATTTCCGG 59.970 60.0 0.00 0.0 41.36 5.14 F
1191 1204 0.116342 TGTCCTTCTGCCTCTGGGTA 59.884 55.0 0.00 0.0 34.45 3.69 F
1896 1916 0.885196 AGAGAAGAGAGGCACGACAC 59.115 55.0 0.00 0.0 0.00 3.67 F
2216 2238 0.896940 CTGTTCCTGGCAGCAATGGT 60.897 55.0 9.56 0.0 0.00 3.55 F
3244 3266 1.089920 CCTTTTGATCTCGGCCACAG 58.910 55.0 2.24 0.0 0.00 3.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1916 1936 0.111134 CGATGAACACACACACGCAG 60.111 55.000 0.00 0.0 0.00 5.18 R
2216 2238 2.771943 CAACATGGGGAGACTAAGGCTA 59.228 50.000 0.00 0.0 0.00 3.93 R
2781 2803 3.571590 CAGTATAGTCAGGAAGGCCTCT 58.428 50.000 5.23 0.0 44.80 3.69 R
3921 3949 2.435586 CCTGACGGCCTGCTCAAG 60.436 66.667 0.00 0.0 0.00 3.02 R
5239 5354 0.036164 AGTGGTTAGCGGTTGATGCA 59.964 50.000 0.00 0.0 33.85 3.96 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
63 64 2.981909 GCTCACCAGCAGCAGCAA 60.982 61.111 3.17 0.00 46.06 3.91
162 165 0.933700 CTCTCTCTCCCTCCCTCCTT 59.066 60.000 0.00 0.00 0.00 3.36
469 477 1.782569 CAACTGCGACTTTTGTGCATG 59.217 47.619 0.00 0.00 36.46 4.06
478 486 5.673568 GCGACTTTTGTGCATGAGCTTTATA 60.674 40.000 0.00 0.00 42.74 0.98
512 520 3.134458 GTCGGAGAAAGCCATCCAATAG 58.866 50.000 0.00 0.00 39.69 1.73
518 526 5.163301 GGAGAAAGCCATCCAATAGTACTCA 60.163 44.000 0.00 0.00 35.54 3.41
519 527 5.923204 AGAAAGCCATCCAATAGTACTCAG 58.077 41.667 0.00 0.00 0.00 3.35
520 528 5.426833 AGAAAGCCATCCAATAGTACTCAGT 59.573 40.000 0.00 0.00 0.00 3.41
521 529 6.611642 AGAAAGCCATCCAATAGTACTCAGTA 59.388 38.462 0.00 0.00 0.00 2.74
522 530 5.793030 AGCCATCCAATAGTACTCAGTAC 57.207 43.478 6.89 6.89 39.10 2.73
524 532 5.536916 AGCCATCCAATAGTACTCAGTACTC 59.463 44.000 21.19 3.73 44.86 2.59
525 533 5.279056 GCCATCCAATAGTACTCAGTACTCC 60.279 48.000 21.19 0.00 44.86 3.85
526 534 5.244178 CCATCCAATAGTACTCAGTACTCCC 59.756 48.000 21.19 0.00 44.86 4.30
527 535 5.728937 TCCAATAGTACTCAGTACTCCCT 57.271 43.478 21.19 4.89 44.86 4.20
528 536 5.692928 TCCAATAGTACTCAGTACTCCCTC 58.307 45.833 21.19 0.00 44.86 4.30
529 537 5.432390 TCCAATAGTACTCAGTACTCCCTCT 59.568 44.000 21.19 0.00 44.86 3.69
530 538 5.533154 CCAATAGTACTCAGTACTCCCTCTG 59.467 48.000 21.19 11.50 44.86 3.35
531 539 5.979656 ATAGTACTCAGTACTCCCTCTGT 57.020 43.478 21.19 0.00 44.86 3.41
532 540 4.224991 AGTACTCAGTACTCCCTCTGTC 57.775 50.000 12.06 0.00 44.86 3.51
533 541 2.517998 ACTCAGTACTCCCTCTGTCC 57.482 55.000 0.00 0.00 33.89 4.02
534 542 1.340211 ACTCAGTACTCCCTCTGTCCG 60.340 57.143 0.00 0.00 33.89 4.79
535 543 0.989602 TCAGTACTCCCTCTGTCCGA 59.010 55.000 0.00 0.00 33.89 4.55
536 544 1.353358 TCAGTACTCCCTCTGTCCGAA 59.647 52.381 0.00 0.00 33.89 4.30
537 545 2.168496 CAGTACTCCCTCTGTCCGAAA 58.832 52.381 0.00 0.00 0.00 3.46
538 546 2.561419 CAGTACTCCCTCTGTCCGAAAA 59.439 50.000 0.00 0.00 0.00 2.29
539 547 3.195825 CAGTACTCCCTCTGTCCGAAAAT 59.804 47.826 0.00 0.00 0.00 1.82
540 548 4.401519 CAGTACTCCCTCTGTCCGAAAATA 59.598 45.833 0.00 0.00 0.00 1.40
541 549 3.889520 ACTCCCTCTGTCCGAAAATAC 57.110 47.619 0.00 0.00 0.00 1.89
542 550 3.442076 ACTCCCTCTGTCCGAAAATACT 58.558 45.455 0.00 0.00 0.00 2.12
543 551 3.838903 ACTCCCTCTGTCCGAAAATACTT 59.161 43.478 0.00 0.00 0.00 2.24
544 552 4.184629 CTCCCTCTGTCCGAAAATACTTG 58.815 47.826 0.00 0.00 0.00 3.16
545 553 3.581332 TCCCTCTGTCCGAAAATACTTGT 59.419 43.478 0.00 0.00 0.00 3.16
546 554 3.684788 CCCTCTGTCCGAAAATACTTGTG 59.315 47.826 0.00 0.00 0.00 3.33
547 555 3.684788 CCTCTGTCCGAAAATACTTGTGG 59.315 47.826 0.00 0.00 0.00 4.17
548 556 3.670625 TCTGTCCGAAAATACTTGTGGG 58.329 45.455 0.00 0.00 0.00 4.61
549 557 3.325425 TCTGTCCGAAAATACTTGTGGGA 59.675 43.478 0.00 0.00 0.00 4.37
550 558 3.670625 TGTCCGAAAATACTTGTGGGAG 58.329 45.455 0.00 0.00 0.00 4.30
551 559 3.325425 TGTCCGAAAATACTTGTGGGAGA 59.675 43.478 0.00 0.00 0.00 3.71
552 560 4.202377 TGTCCGAAAATACTTGTGGGAGAA 60.202 41.667 0.00 0.00 0.00 2.87
553 561 4.758165 GTCCGAAAATACTTGTGGGAGAAA 59.242 41.667 0.00 0.00 0.00 2.52
554 562 5.414765 GTCCGAAAATACTTGTGGGAGAAAT 59.585 40.000 0.00 0.00 0.00 2.17
555 563 5.414454 TCCGAAAATACTTGTGGGAGAAATG 59.586 40.000 0.00 0.00 0.00 2.32
556 564 5.183140 CCGAAAATACTTGTGGGAGAAATGT 59.817 40.000 0.00 0.00 0.00 2.71
557 565 6.314784 CGAAAATACTTGTGGGAGAAATGTC 58.685 40.000 0.00 0.00 0.00 3.06
558 566 6.149474 CGAAAATACTTGTGGGAGAAATGTCT 59.851 38.462 0.00 0.00 36.55 3.41
559 567 7.333423 CGAAAATACTTGTGGGAGAAATGTCTA 59.667 37.037 0.00 0.00 32.80 2.59
560 568 8.934023 AAAATACTTGTGGGAGAAATGTCTAA 57.066 30.769 0.00 0.00 32.80 2.10
561 569 8.934023 AAATACTTGTGGGAGAAATGTCTAAA 57.066 30.769 0.00 0.00 32.80 1.85
562 570 8.934023 AATACTTGTGGGAGAAATGTCTAAAA 57.066 30.769 0.00 0.00 32.80 1.52
563 571 8.934023 ATACTTGTGGGAGAAATGTCTAAAAA 57.066 30.769 0.00 0.00 32.80 1.94
564 572 7.839680 ACTTGTGGGAGAAATGTCTAAAAAT 57.160 32.000 0.00 0.00 32.80 1.82
565 573 7.661040 ACTTGTGGGAGAAATGTCTAAAAATG 58.339 34.615 0.00 0.00 32.80 2.32
566 574 7.505585 ACTTGTGGGAGAAATGTCTAAAAATGA 59.494 33.333 0.00 0.00 32.80 2.57
567 575 7.831691 TGTGGGAGAAATGTCTAAAAATGAA 57.168 32.000 0.00 0.00 32.80 2.57
568 576 8.421249 TGTGGGAGAAATGTCTAAAAATGAAT 57.579 30.769 0.00 0.00 32.80 2.57
569 577 8.306038 TGTGGGAGAAATGTCTAAAAATGAATG 58.694 33.333 0.00 0.00 32.80 2.67
570 578 8.306761 GTGGGAGAAATGTCTAAAAATGAATGT 58.693 33.333 0.00 0.00 32.80 2.71
571 579 9.527157 TGGGAGAAATGTCTAAAAATGAATGTA 57.473 29.630 0.00 0.00 32.80 2.29
609 617 6.865834 ACATCTAGATACATCCATTCCTCC 57.134 41.667 4.54 0.00 0.00 4.30
610 618 5.420421 ACATCTAGATACATCCATTCCTCCG 59.580 44.000 4.54 0.00 0.00 4.63
611 619 5.256806 TCTAGATACATCCATTCCTCCGA 57.743 43.478 0.00 0.00 0.00 4.55
612 620 5.010933 TCTAGATACATCCATTCCTCCGAC 58.989 45.833 0.00 0.00 0.00 4.79
613 621 2.558795 AGATACATCCATTCCTCCGACG 59.441 50.000 0.00 0.00 0.00 5.12
614 622 2.061509 TACATCCATTCCTCCGACGA 57.938 50.000 0.00 0.00 0.00 4.20
615 623 0.747255 ACATCCATTCCTCCGACGAG 59.253 55.000 0.00 0.00 35.72 4.18
616 624 0.747255 CATCCATTCCTCCGACGAGT 59.253 55.000 0.00 0.00 33.93 4.18
617 625 1.954382 CATCCATTCCTCCGACGAGTA 59.046 52.381 0.00 0.00 33.93 2.59
618 626 2.359981 TCCATTCCTCCGACGAGTAT 57.640 50.000 0.00 0.00 33.93 2.12
619 627 2.662866 TCCATTCCTCCGACGAGTATT 58.337 47.619 0.00 0.00 33.93 1.89
620 628 3.028850 TCCATTCCTCCGACGAGTATTT 58.971 45.455 0.00 0.00 33.93 1.40
621 629 3.067742 TCCATTCCTCCGACGAGTATTTC 59.932 47.826 0.00 0.00 33.93 2.17
622 630 3.381949 CATTCCTCCGACGAGTATTTCC 58.618 50.000 0.00 0.00 33.93 3.13
623 631 1.019673 TCCTCCGACGAGTATTTCCG 58.980 55.000 0.00 0.00 33.93 4.30
624 632 0.030369 CCTCCGACGAGTATTTCCGG 59.970 60.000 0.00 0.00 41.36 5.14
625 633 1.019673 CTCCGACGAGTATTTCCGGA 58.980 55.000 0.00 0.00 45.74 5.14
626 634 0.734889 TCCGACGAGTATTTCCGGAC 59.265 55.000 1.83 0.00 43.47 4.79
627 635 0.452987 CCGACGAGTATTTCCGGACA 59.547 55.000 1.83 0.00 42.49 4.02
628 636 1.533338 CCGACGAGTATTTCCGGACAG 60.533 57.143 1.83 0.00 42.49 3.51
629 637 1.399440 CGACGAGTATTTCCGGACAGA 59.601 52.381 1.83 0.00 0.00 3.41
630 638 2.159476 CGACGAGTATTTCCGGACAGAA 60.159 50.000 1.83 0.00 0.00 3.02
631 639 3.436496 GACGAGTATTTCCGGACAGAAG 58.564 50.000 1.83 0.00 0.00 2.85
632 640 2.165845 ACGAGTATTTCCGGACAGAAGG 59.834 50.000 1.83 0.00 0.00 3.46
633 641 2.426024 CGAGTATTTCCGGACAGAAGGA 59.574 50.000 1.83 0.00 34.19 3.36
634 642 3.489398 CGAGTATTTCCGGACAGAAGGAG 60.489 52.174 1.83 0.00 37.88 3.69
639 647 2.526888 TCCGGACAGAAGGAGTACAT 57.473 50.000 0.00 0.00 31.95 2.29
650 658 5.992217 CAGAAGGAGTACATAATAACAGGCC 59.008 44.000 0.00 0.00 0.00 5.19
673 681 3.800261 GCTGTCAAGTGTGAGCAGAGTTA 60.800 47.826 9.18 0.00 36.12 2.24
674 682 4.371786 CTGTCAAGTGTGAGCAGAGTTAA 58.628 43.478 0.00 0.00 36.12 2.01
688 696 4.315803 CAGAGTTAAATCCCACAGAACGT 58.684 43.478 0.00 0.00 0.00 3.99
689 697 4.755123 CAGAGTTAAATCCCACAGAACGTT 59.245 41.667 0.00 0.00 0.00 3.99
690 698 5.238650 CAGAGTTAAATCCCACAGAACGTTT 59.761 40.000 0.46 0.00 0.00 3.60
807 815 6.306356 CGTTGTCTTGCATTTTAGGATTTGAG 59.694 38.462 0.00 0.00 0.00 3.02
850 858 1.740025 GGCAATGCTTTAGTCGCTCTT 59.260 47.619 4.82 0.00 0.00 2.85
1164 1177 2.281761 CTCCGCAACAGTTGGGCT 60.282 61.111 22.05 0.00 41.74 5.19
1184 1197 0.773644 ACCAATGTGTCCTTCTGCCT 59.226 50.000 0.00 0.00 0.00 4.75
1191 1204 0.116342 TGTCCTTCTGCCTCTGGGTA 59.884 55.000 0.00 0.00 34.45 3.69
1419 1432 2.967599 TGTCTCACTCCATTCCATCG 57.032 50.000 0.00 0.00 0.00 3.84
1459 1472 3.648067 AGGTCTCCAAGTTCTTGATGTGA 59.352 43.478 13.29 2.51 0.00 3.58
1551 1564 2.783135 CATGCCAACTACTTGAGTGGT 58.217 47.619 0.00 0.00 41.67 4.16
1552 1565 2.543777 TGCCAACTACTTGAGTGGTC 57.456 50.000 0.46 0.00 38.86 4.02
1553 1566 1.765904 TGCCAACTACTTGAGTGGTCA 59.234 47.619 0.46 0.00 38.86 4.02
1554 1567 2.224281 TGCCAACTACTTGAGTGGTCAG 60.224 50.000 0.46 0.00 38.86 3.51
1576 1589 6.939730 TCAGTGTTGGCAATAATCTTGTCTTA 59.060 34.615 1.92 0.00 0.00 2.10
1577 1590 7.446931 TCAGTGTTGGCAATAATCTTGTCTTAA 59.553 33.333 1.92 0.00 0.00 1.85
1593 1606 5.574082 TGTCTTAAATGTTTTGGTGTCACG 58.426 37.500 0.00 0.00 0.00 4.35
1638 1651 2.227194 AGGAAGGCCGTGTAGTTTTTG 58.773 47.619 0.00 0.00 39.96 2.44
1654 1667 4.827284 AGTTTTTGGTTAGTCCTCCATGTG 59.173 41.667 0.00 0.00 37.07 3.21
1853 1866 4.110482 GGCTAGTTATTGTACCGTGAGTG 58.890 47.826 0.00 0.00 0.00 3.51
1856 1874 4.451629 AGTTATTGTACCGTGAGTGGAG 57.548 45.455 0.00 0.00 0.00 3.86
1859 1877 5.011329 AGTTATTGTACCGTGAGTGGAGAAA 59.989 40.000 0.00 0.00 0.00 2.52
1862 1880 3.460103 TGTACCGTGAGTGGAGAAAAAC 58.540 45.455 0.00 0.00 0.00 2.43
1863 1881 1.963172 ACCGTGAGTGGAGAAAAACC 58.037 50.000 0.00 0.00 0.00 3.27
1865 1883 1.873591 CCGTGAGTGGAGAAAAACCAG 59.126 52.381 0.00 0.00 38.14 4.00
1867 1885 3.202906 CGTGAGTGGAGAAAAACCAGAA 58.797 45.455 0.00 0.00 38.14 3.02
1869 1887 4.095782 CGTGAGTGGAGAAAAACCAGAAAA 59.904 41.667 0.00 0.00 38.14 2.29
1870 1888 5.582550 GTGAGTGGAGAAAAACCAGAAAAG 58.417 41.667 0.00 0.00 38.14 2.27
1896 1916 0.885196 AGAGAAGAGAGGCACGACAC 59.115 55.000 0.00 0.00 0.00 3.67
1898 1918 1.173444 AGAAGAGAGGCACGACACGT 61.173 55.000 0.00 0.00 42.36 4.49
1925 1945 1.469079 GGCAAAAGTTTCTGCGTGTGT 60.469 47.619 13.14 0.00 39.55 3.72
1964 1986 2.029666 GATCGATCCTGTGGGCGG 59.970 66.667 14.76 0.00 0.00 6.13
1966 1988 2.028125 GATCGATCCTGTGGGCGGAA 62.028 60.000 14.76 0.00 33.55 4.30
1968 1990 1.595382 CGATCCTGTGGGCGGAATC 60.595 63.158 0.00 0.00 33.55 2.52
1978 2000 1.002624 GGCGGAATCCCAACAGTCA 60.003 57.895 0.00 0.00 0.00 3.41
2012 2034 4.746535 TCTGTTCAACAACACACCTCTA 57.253 40.909 0.00 0.00 37.61 2.43
2090 2112 1.941999 GCTCCTTGCCCATGCTTGAC 61.942 60.000 0.22 0.00 38.71 3.18
2216 2238 0.896940 CTGTTCCTGGCAGCAATGGT 60.897 55.000 9.56 0.00 0.00 3.55
2571 2593 3.971305 TGGACTCACAGGTTCTTTTCCTA 59.029 43.478 0.00 0.00 33.54 2.94
2781 2803 6.839124 ATTTGCAGGTGAATGATTTCAGTA 57.161 33.333 0.00 0.00 42.41 2.74
2827 2849 2.038295 ACCTCTCCAAGAAGCTTGTGAG 59.962 50.000 2.10 3.97 0.00 3.51
3244 3266 1.089920 CCTTTTGATCTCGGCCACAG 58.910 55.000 2.24 0.00 0.00 3.66
3498 3523 2.746362 CTGAACCTGTCCTTCAATGAGC 59.254 50.000 0.00 0.00 0.00 4.26
3921 3949 4.321745 CGATAAAAGTGCTCAACATGCAAC 59.678 41.667 0.00 0.00 42.41 4.17
3935 3963 2.970974 GCAACTTGAGCAGGCCGTC 61.971 63.158 0.00 0.00 0.00 4.79
4071 4099 2.092212 CCCAATGGTAGCTTGGAGACAT 60.092 50.000 18.77 0.00 44.95 3.06
4072 4100 2.947652 CCAATGGTAGCTTGGAGACATG 59.052 50.000 14.35 0.00 44.95 3.21
4231 4259 2.143122 GCTGTTTGACGAGGACATGAA 58.857 47.619 0.00 0.00 0.00 2.57
4299 4330 0.102120 CTCCATGGTCTCAGCGAGTC 59.898 60.000 12.58 1.11 0.00 3.36
4403 4457 4.201920 GCTGCTATTACTTTGGTTGGCTAC 60.202 45.833 0.00 0.00 0.00 3.58
4418 4475 2.125685 GGCTACCGCTATCGACTTTTC 58.874 52.381 0.00 0.00 38.10 2.29
4419 4476 3.417869 GGCTACCGCTATCGACTTTTCG 61.418 54.545 0.00 0.00 40.56 3.46
4650 4719 3.595108 GAACAGGCGCGGCTTTCAC 62.595 63.158 34.44 19.67 0.00 3.18
4658 4727 1.357334 GCGGCTTTCACCACGAAAA 59.643 52.632 0.00 0.00 43.01 2.29
4675 4744 6.748658 CCACGAAAACAATACTACTACATCGA 59.251 38.462 0.00 0.00 0.00 3.59
4693 4762 1.598701 GACATTGCCTTCCACTGCCC 61.599 60.000 0.00 0.00 0.00 5.36
4731 4800 2.184322 TCGACATTCGAGCTGGGC 59.816 61.111 0.00 0.00 44.82 5.36
4899 4971 6.128117 TGTGTTTTGTTCTCCTTGTTAGTGTC 60.128 38.462 0.00 0.00 0.00 3.67
4901 4973 6.601613 TGTTTTGTTCTCCTTGTTAGTGTCAT 59.398 34.615 0.00 0.00 0.00 3.06
4902 4974 6.618287 TTTGTTCTCCTTGTTAGTGTCATG 57.382 37.500 0.00 0.00 0.00 3.07
4905 4977 6.533730 TGTTCTCCTTGTTAGTGTCATGAAT 58.466 36.000 0.00 0.00 0.00 2.57
4906 4978 6.427853 TGTTCTCCTTGTTAGTGTCATGAATG 59.572 38.462 0.00 0.00 0.00 2.67
4907 4979 6.114187 TCTCCTTGTTAGTGTCATGAATGT 57.886 37.500 0.00 0.00 0.00 2.71
4908 4980 7.239763 TCTCCTTGTTAGTGTCATGAATGTA 57.760 36.000 0.00 0.00 0.00 2.29
4909 4981 7.851228 TCTCCTTGTTAGTGTCATGAATGTAT 58.149 34.615 0.00 0.00 0.00 2.29
4910 4982 8.321353 TCTCCTTGTTAGTGTCATGAATGTATT 58.679 33.333 0.00 0.00 0.00 1.89
4911 4983 8.267620 TCCTTGTTAGTGTCATGAATGTATTG 57.732 34.615 0.00 0.00 0.00 1.90
4912 4984 6.968904 CCTTGTTAGTGTCATGAATGTATTGC 59.031 38.462 0.00 0.00 0.00 3.56
4995 5080 3.360340 GCACCTGCCACTGCTGTC 61.360 66.667 0.00 0.00 38.71 3.51
5014 5099 8.607441 TGCTGTCATATTATCACCATCTAAAC 57.393 34.615 0.00 0.00 0.00 2.01
5022 5107 3.788227 TCACCATCTAAACCTGCAGTT 57.212 42.857 13.81 3.71 41.81 3.16
5023 5108 3.411446 TCACCATCTAAACCTGCAGTTG 58.589 45.455 13.81 0.00 39.19 3.16
5024 5109 3.072330 TCACCATCTAAACCTGCAGTTGA 59.928 43.478 13.81 1.00 39.19 3.18
5025 5110 4.012374 CACCATCTAAACCTGCAGTTGAT 58.988 43.478 13.81 3.52 39.19 2.57
5026 5111 4.012374 ACCATCTAAACCTGCAGTTGATG 58.988 43.478 13.81 14.92 39.19 3.07
5027 5112 4.012374 CCATCTAAACCTGCAGTTGATGT 58.988 43.478 13.81 0.00 37.25 3.06
5028 5113 4.460382 CCATCTAAACCTGCAGTTGATGTT 59.540 41.667 13.81 6.22 37.25 2.71
5029 5114 5.392380 CCATCTAAACCTGCAGTTGATGTTC 60.392 44.000 13.81 0.00 37.25 3.18
5030 5115 4.072131 TCTAAACCTGCAGTTGATGTTCC 58.928 43.478 13.81 0.00 39.19 3.62
5031 5116 2.664402 AACCTGCAGTTGATGTTCCT 57.336 45.000 13.81 0.00 37.29 3.36
5032 5117 2.191128 ACCTGCAGTTGATGTTCCTC 57.809 50.000 13.81 0.00 0.00 3.71
5033 5118 1.081892 CCTGCAGTTGATGTTCCTCG 58.918 55.000 13.81 0.00 0.00 4.63
5034 5119 1.081892 CTGCAGTTGATGTTCCTCGG 58.918 55.000 5.25 0.00 0.00 4.63
5035 5120 0.684535 TGCAGTTGATGTTCCTCGGA 59.315 50.000 0.00 0.00 0.00 4.55
5036 5121 1.071542 TGCAGTTGATGTTCCTCGGAA 59.928 47.619 0.00 0.00 0.00 4.30
5037 5122 1.734465 GCAGTTGATGTTCCTCGGAAG 59.266 52.381 0.00 0.00 34.49 3.46
5038 5123 2.872038 GCAGTTGATGTTCCTCGGAAGT 60.872 50.000 0.00 0.00 34.49 3.01
5068 5156 8.475331 ACAAATCACTGTAAGAAATACTACCG 57.525 34.615 0.00 0.00 37.43 4.02
5070 5158 8.592998 CAAATCACTGTAAGAAATACTACCGTC 58.407 37.037 0.00 0.00 37.43 4.79
5082 5170 1.319541 CTACCGTCCATGAGACCGAT 58.680 55.000 0.00 0.00 43.08 4.18
5103 5199 2.161855 GGAACATCAAGTGCATGGTCA 58.838 47.619 4.78 0.00 39.41 4.02
5105 5201 2.574006 ACATCAAGTGCATGGTCAGT 57.426 45.000 0.00 0.00 0.00 3.41
5106 5202 2.156917 ACATCAAGTGCATGGTCAGTG 58.843 47.619 0.00 0.00 0.00 3.66
5107 5203 1.471287 CATCAAGTGCATGGTCAGTGG 59.529 52.381 0.00 0.00 0.00 4.00
5108 5204 0.250858 TCAAGTGCATGGTCAGTGGG 60.251 55.000 0.00 0.00 0.00 4.61
5109 5205 0.250858 CAAGTGCATGGTCAGTGGGA 60.251 55.000 0.00 0.00 0.00 4.37
5110 5206 0.700564 AAGTGCATGGTCAGTGGGAT 59.299 50.000 0.00 0.00 0.00 3.85
5111 5207 1.583556 AGTGCATGGTCAGTGGGATA 58.416 50.000 0.00 0.00 0.00 2.59
5112 5208 1.915489 AGTGCATGGTCAGTGGGATAA 59.085 47.619 0.00 0.00 0.00 1.75
5113 5209 2.511218 AGTGCATGGTCAGTGGGATAAT 59.489 45.455 0.00 0.00 0.00 1.28
5114 5210 3.053395 AGTGCATGGTCAGTGGGATAATT 60.053 43.478 0.00 0.00 0.00 1.40
5115 5211 3.067180 GTGCATGGTCAGTGGGATAATTG 59.933 47.826 0.00 0.00 0.00 2.32
5116 5212 2.624838 GCATGGTCAGTGGGATAATTGG 59.375 50.000 0.00 0.00 0.00 3.16
5117 5213 3.225104 CATGGTCAGTGGGATAATTGGG 58.775 50.000 0.00 0.00 0.00 4.12
5118 5214 2.567862 TGGTCAGTGGGATAATTGGGA 58.432 47.619 0.00 0.00 0.00 4.37
5119 5215 3.130450 TGGTCAGTGGGATAATTGGGAT 58.870 45.455 0.00 0.00 0.00 3.85
5120 5216 3.531397 TGGTCAGTGGGATAATTGGGATT 59.469 43.478 0.00 0.00 0.00 3.01
5121 5217 3.891366 GGTCAGTGGGATAATTGGGATTG 59.109 47.826 0.00 0.00 0.00 2.67
5122 5218 4.536765 GTCAGTGGGATAATTGGGATTGT 58.463 43.478 0.00 0.00 0.00 2.71
5123 5219 5.398581 GGTCAGTGGGATAATTGGGATTGTA 60.399 44.000 0.00 0.00 0.00 2.41
5124 5220 5.765182 GTCAGTGGGATAATTGGGATTGTAG 59.235 44.000 0.00 0.00 0.00 2.74
5125 5221 4.520492 CAGTGGGATAATTGGGATTGTAGC 59.480 45.833 0.00 0.00 0.00 3.58
5126 5222 4.167892 AGTGGGATAATTGGGATTGTAGCA 59.832 41.667 0.00 0.00 0.00 3.49
5127 5223 4.278419 GTGGGATAATTGGGATTGTAGCAC 59.722 45.833 0.00 0.00 0.00 4.40
5128 5224 3.826729 GGGATAATTGGGATTGTAGCACC 59.173 47.826 0.00 0.00 0.00 5.01
5129 5225 3.502211 GGATAATTGGGATTGTAGCACCG 59.498 47.826 0.00 0.00 0.00 4.94
5130 5226 2.507407 AATTGGGATTGTAGCACCGT 57.493 45.000 0.00 0.00 0.00 4.83
5131 5227 2.038387 ATTGGGATTGTAGCACCGTC 57.962 50.000 0.00 0.00 0.00 4.79
5132 5228 0.687920 TTGGGATTGTAGCACCGTCA 59.312 50.000 0.00 0.00 0.00 4.35
5183 5298 0.110486 TTGTCCCTGGCCTTCTGAAC 59.890 55.000 3.32 0.00 0.00 3.18
5190 5305 0.694771 TGGCCTTCTGAACATCTGCT 59.305 50.000 3.32 0.00 0.00 4.24
5199 5314 7.416022 CCTTCTGAACATCTGCTCAATATTTC 58.584 38.462 0.00 0.00 0.00 2.17
5206 5321 6.182627 ACATCTGCTCAATATTTCAGGAACA 58.817 36.000 8.45 0.00 0.00 3.18
5216 5331 8.420222 TCAATATTTCAGGAACAAAACATGTGT 58.580 29.630 0.00 0.00 42.99 3.72
5218 5333 4.383850 TTCAGGAACAAAACATGTGTGG 57.616 40.909 0.00 0.00 42.99 4.17
5240 5355 5.830900 GCAGATTAGCCTCTAAATACGTG 57.169 43.478 0.00 0.00 0.00 4.49
5241 5356 4.150804 GCAGATTAGCCTCTAAATACGTGC 59.849 45.833 0.00 0.00 0.00 5.34
5244 5359 6.090088 CAGATTAGCCTCTAAATACGTGCATC 59.910 42.308 0.00 0.00 0.00 3.91
5246 5361 4.137116 AGCCTCTAAATACGTGCATCAA 57.863 40.909 0.00 0.00 0.00 2.57
5247 5362 3.871594 AGCCTCTAAATACGTGCATCAAC 59.128 43.478 0.00 0.00 0.00 3.18
5252 5367 2.303163 AATACGTGCATCAACCGCTA 57.697 45.000 0.00 0.00 0.00 4.26
5253 5368 2.303163 ATACGTGCATCAACCGCTAA 57.697 45.000 0.00 0.00 0.00 3.09
5254 5369 1.352114 TACGTGCATCAACCGCTAAC 58.648 50.000 0.00 0.00 0.00 2.34
5255 5370 1.296056 ACGTGCATCAACCGCTAACC 61.296 55.000 0.00 0.00 0.00 2.85
5256 5371 1.295357 CGTGCATCAACCGCTAACCA 61.295 55.000 0.00 0.00 0.00 3.67
5257 5372 0.168128 GTGCATCAACCGCTAACCAC 59.832 55.000 0.00 0.00 0.00 4.16
5259 5374 1.165270 GCATCAACCGCTAACCACTT 58.835 50.000 0.00 0.00 0.00 3.16
5260 5375 1.135689 GCATCAACCGCTAACCACTTG 60.136 52.381 0.00 0.00 0.00 3.16
5261 5376 2.151202 CATCAACCGCTAACCACTTGT 58.849 47.619 0.00 0.00 0.00 3.16
5262 5377 3.331150 CATCAACCGCTAACCACTTGTA 58.669 45.455 0.00 0.00 0.00 2.41
5263 5378 3.688694 TCAACCGCTAACCACTTGTAT 57.311 42.857 0.00 0.00 0.00 2.29
5264 5379 3.592059 TCAACCGCTAACCACTTGTATC 58.408 45.455 0.00 0.00 0.00 2.24
5265 5380 2.676342 CAACCGCTAACCACTTGTATCC 59.324 50.000 0.00 0.00 0.00 2.59
5266 5381 1.903860 ACCGCTAACCACTTGTATCCA 59.096 47.619 0.00 0.00 0.00 3.41
5268 5383 2.093658 CCGCTAACCACTTGTATCCACT 60.094 50.000 0.00 0.00 0.00 4.00
5270 5385 3.368013 CGCTAACCACTTGTATCCACTCA 60.368 47.826 0.00 0.00 0.00 3.41
5274 5389 4.640771 ACCACTTGTATCCACTCAACAT 57.359 40.909 0.00 0.00 0.00 2.71
5275 5390 4.326826 ACCACTTGTATCCACTCAACATG 58.673 43.478 0.00 0.00 0.00 3.21
5276 5391 4.202461 ACCACTTGTATCCACTCAACATGT 60.202 41.667 0.00 0.00 33.33 3.21
5277 5392 4.154737 CCACTTGTATCCACTCAACATGTG 59.845 45.833 0.00 11.57 43.47 3.21
5278 5393 4.996758 CACTTGTATCCACTCAACATGTGA 59.003 41.667 0.00 0.00 45.16 3.58
5279 5394 5.645067 CACTTGTATCCACTCAACATGTGAT 59.355 40.000 0.00 0.00 45.16 3.06
5281 5396 6.716628 ACTTGTATCCACTCAACATGTGATTT 59.283 34.615 0.00 0.00 37.60 2.17
5282 5397 7.882791 ACTTGTATCCACTCAACATGTGATTTA 59.117 33.333 0.00 0.00 37.60 1.40
5283 5398 7.609760 TGTATCCACTCAACATGTGATTTAC 57.390 36.000 0.00 0.00 37.60 2.01
5284 5399 7.394016 TGTATCCACTCAACATGTGATTTACT 58.606 34.615 0.00 0.00 37.60 2.24
5287 5402 5.700832 TCCACTCAACATGTGATTTACTGAC 59.299 40.000 0.00 0.00 37.60 3.51
5288 5403 5.389830 CCACTCAACATGTGATTTACTGACG 60.390 44.000 0.00 0.00 37.60 4.35
5290 5405 3.435327 TCAACATGTGATTTACTGACGGC 59.565 43.478 0.00 0.00 0.00 5.68
5291 5406 3.334583 ACATGTGATTTACTGACGGCT 57.665 42.857 0.00 0.00 0.00 5.52
5292 5407 3.002791 ACATGTGATTTACTGACGGCTG 58.997 45.455 0.00 0.00 0.00 4.85
5293 5408 1.438651 TGTGATTTACTGACGGCTGC 58.561 50.000 0.00 0.00 0.00 5.25
5294 5409 1.270571 TGTGATTTACTGACGGCTGCA 60.271 47.619 0.50 0.00 0.00 4.41
5296 5411 1.275010 TGATTTACTGACGGCTGCAGA 59.725 47.619 20.43 0.00 36.86 4.26
5298 5413 3.132111 TGATTTACTGACGGCTGCAGATA 59.868 43.478 20.43 8.63 36.86 1.98
5299 5414 2.871182 TTACTGACGGCTGCAGATAG 57.129 50.000 20.43 9.97 36.86 2.08
5300 5415 2.052782 TACTGACGGCTGCAGATAGA 57.947 50.000 20.43 0.00 36.86 1.98
5301 5416 0.457851 ACTGACGGCTGCAGATAGAC 59.542 55.000 20.43 8.36 36.86 2.59
5303 5418 0.970427 TGACGGCTGCAGATAGACCA 60.970 55.000 20.43 3.86 0.00 4.02
5304 5419 0.528684 GACGGCTGCAGATAGACCAC 60.529 60.000 20.43 2.04 0.00 4.16
5305 5420 1.257750 ACGGCTGCAGATAGACCACA 61.258 55.000 20.43 0.00 0.00 4.17
5306 5421 0.108186 CGGCTGCAGATAGACCACAA 60.108 55.000 20.43 0.00 0.00 3.33
5308 5423 1.012841 GCTGCAGATAGACCACAAGC 58.987 55.000 20.43 0.00 0.00 4.01
5309 5424 1.661341 CTGCAGATAGACCACAAGCC 58.339 55.000 8.42 0.00 0.00 4.35
5310 5425 1.209019 CTGCAGATAGACCACAAGCCT 59.791 52.381 8.42 0.00 0.00 4.58
5311 5426 1.208052 TGCAGATAGACCACAAGCCTC 59.792 52.381 0.00 0.00 0.00 4.70
5313 5428 2.695666 GCAGATAGACCACAAGCCTCTA 59.304 50.000 0.00 0.00 0.00 2.43
5314 5429 3.133003 GCAGATAGACCACAAGCCTCTAA 59.867 47.826 0.00 0.00 0.00 2.10
5315 5430 4.383118 GCAGATAGACCACAAGCCTCTAAA 60.383 45.833 0.00 0.00 0.00 1.85
5316 5431 5.734720 CAGATAGACCACAAGCCTCTAAAA 58.265 41.667 0.00 0.00 0.00 1.52
5317 5432 6.173339 CAGATAGACCACAAGCCTCTAAAAA 58.827 40.000 0.00 0.00 0.00 1.94
5318 5433 6.825721 CAGATAGACCACAAGCCTCTAAAAAT 59.174 38.462 0.00 0.00 0.00 1.82
5319 5434 7.987458 CAGATAGACCACAAGCCTCTAAAAATA 59.013 37.037 0.00 0.00 0.00 1.40
5320 5435 8.718656 AGATAGACCACAAGCCTCTAAAAATAT 58.281 33.333 0.00 0.00 0.00 1.28
5321 5436 8.682936 ATAGACCACAAGCCTCTAAAAATATG 57.317 34.615 0.00 0.00 0.00 1.78
5323 5438 6.948309 AGACCACAAGCCTCTAAAAATATGTT 59.052 34.615 0.00 0.00 0.00 2.71
5324 5439 6.924111 ACCACAAGCCTCTAAAAATATGTTG 58.076 36.000 0.00 0.00 0.00 3.33
5325 5440 6.719370 ACCACAAGCCTCTAAAAATATGTTGA 59.281 34.615 0.00 0.00 0.00 3.18
5327 5442 6.749118 CACAAGCCTCTAAAAATATGTTGAGC 59.251 38.462 0.00 0.00 0.00 4.26
5328 5443 5.741388 AGCCTCTAAAAATATGTTGAGCG 57.259 39.130 0.00 0.00 0.00 5.03
5329 5444 4.035675 AGCCTCTAAAAATATGTTGAGCGC 59.964 41.667 0.00 0.00 0.00 5.92
5331 5446 4.518217 CTCTAAAAATATGTTGAGCGCGG 58.482 43.478 8.83 0.00 0.00 6.46
5332 5447 1.908065 AAAAATATGTTGAGCGCGGC 58.092 45.000 8.83 0.00 0.00 6.53
5333 5448 0.808125 AAAATATGTTGAGCGCGGCA 59.192 45.000 8.83 0.83 0.00 5.69
5334 5449 1.024271 AAATATGTTGAGCGCGGCAT 58.976 45.000 8.83 7.96 0.00 4.40
5335 5450 1.877637 AATATGTTGAGCGCGGCATA 58.122 45.000 8.83 9.95 0.00 3.14
5336 5451 2.099141 ATATGTTGAGCGCGGCATAT 57.901 45.000 8.83 16.99 31.83 1.78
5337 5452 1.877637 TATGTTGAGCGCGGCATATT 58.122 45.000 8.83 0.00 0.00 1.28
5338 5453 0.588252 ATGTTGAGCGCGGCATATTC 59.412 50.000 8.83 0.00 0.00 1.75
5340 5455 1.227118 TTGAGCGCGGCATATTCGA 60.227 52.632 8.83 0.00 0.00 3.71
5341 5456 0.808060 TTGAGCGCGGCATATTCGAA 60.808 50.000 8.83 0.00 0.00 3.71
5342 5457 0.599991 TGAGCGCGGCATATTCGAAT 60.600 50.000 16.15 16.15 0.00 3.34
5343 5458 1.336424 TGAGCGCGGCATATTCGAATA 60.336 47.619 19.63 19.63 0.00 1.75
5345 5460 1.068474 GCGCGGCATATTCGAATAGT 58.932 50.000 21.55 8.69 0.00 2.12
5346 5461 2.094906 AGCGCGGCATATTCGAATAGTA 60.095 45.455 21.55 2.79 0.00 1.82
5348 5463 3.306166 GCGCGGCATATTCGAATAGTAAT 59.694 43.478 21.55 4.77 0.00 1.89
5350 5465 5.331607 GCGCGGCATATTCGAATAGTAATAG 60.332 44.000 21.55 12.95 0.00 1.73
5351 5466 5.969435 CGCGGCATATTCGAATAGTAATAGA 59.031 40.000 21.55 0.00 0.00 1.98
5353 5468 7.008901 CGCGGCATATTCGAATAGTAATAGAAA 59.991 37.037 21.55 0.00 0.00 2.52
5354 5469 8.653338 GCGGCATATTCGAATAGTAATAGAAAA 58.347 33.333 21.55 0.00 0.00 2.29
5374 5489 5.977489 AAAGTAGTGGTTTAGAATTGGCC 57.023 39.130 0.00 0.00 0.00 5.36
5375 5490 4.929146 AGTAGTGGTTTAGAATTGGCCT 57.071 40.909 3.32 0.00 0.00 5.19
5376 5491 6.382919 AAGTAGTGGTTTAGAATTGGCCTA 57.617 37.500 3.32 0.00 0.00 3.93
5377 5492 6.382919 AGTAGTGGTTTAGAATTGGCCTAA 57.617 37.500 3.32 0.00 0.00 2.69
5378 5493 6.970191 AGTAGTGGTTTAGAATTGGCCTAAT 58.030 36.000 3.32 0.00 0.00 1.73
5384 5499 6.071051 TGGTTTAGAATTGGCCTAATTTGGAC 60.071 38.462 10.34 7.55 39.06 4.02
5385 5500 5.828299 TTAGAATTGGCCTAATTTGGACG 57.172 39.130 10.34 0.00 39.06 4.79
5386 5501 3.697166 AGAATTGGCCTAATTTGGACGT 58.303 40.909 10.34 0.00 39.06 4.34
5387 5502 4.850680 AGAATTGGCCTAATTTGGACGTA 58.149 39.130 10.34 0.00 39.06 3.57
5389 5504 4.595986 AATTGGCCTAATTTGGACGTAGT 58.404 39.130 10.34 0.00 38.84 2.73
5392 5507 6.831868 AATTGGCCTAATTTGGACGTAGTAAT 59.168 34.615 10.34 0.00 36.77 1.89
5393 5508 7.994334 AATTGGCCTAATTTGGACGTAGTAATA 59.006 33.333 10.34 0.00 36.77 0.98
5408 5523 8.821147 ACGTAGTAATACTTTGAAATGTGTGA 57.179 30.769 0.00 0.00 41.94 3.58
5410 5525 9.525007 CGTAGTAATACTTTGAAATGTGTGAAC 57.475 33.333 0.00 0.00 0.00 3.18
5414 5529 9.944663 GTAATACTTTGAAATGTGTGAACTTGA 57.055 29.630 0.00 0.00 0.00 3.02
5417 5532 9.868277 ATACTTTGAAATGTGTGAACTTGAAAA 57.132 25.926 0.00 0.00 0.00 2.29
5418 5533 8.017587 ACTTTGAAATGTGTGAACTTGAAAAC 57.982 30.769 0.00 0.00 0.00 2.43
5419 5534 7.872483 ACTTTGAAATGTGTGAACTTGAAAACT 59.128 29.630 0.00 0.00 0.00 2.66
5421 5536 8.600449 TTGAAATGTGTGAACTTGAAAACTTT 57.400 26.923 0.00 0.00 0.00 2.66
5424 5539 5.713792 TGTGTGAACTTGAAAACTTTCCA 57.286 34.783 0.00 0.00 36.36 3.53
5425 5540 6.279513 TGTGTGAACTTGAAAACTTTCCAT 57.720 33.333 0.00 0.00 36.36 3.41
5426 5541 7.397892 TGTGTGAACTTGAAAACTTTCCATA 57.602 32.000 0.00 0.00 36.36 2.74
5427 5542 7.831753 TGTGTGAACTTGAAAACTTTCCATAA 58.168 30.769 0.00 0.00 36.36 1.90
5428 5543 8.307483 TGTGTGAACTTGAAAACTTTCCATAAA 58.693 29.630 0.00 0.00 36.36 1.40
5429 5544 9.145865 GTGTGAACTTGAAAACTTTCCATAAAA 57.854 29.630 0.00 0.00 36.36 1.52
5439 5554 9.151471 GAAAACTTTCCATAAAATAAGGAAGCC 57.849 33.333 0.00 0.00 41.97 4.35
5440 5555 7.790782 AACTTTCCATAAAATAAGGAAGCCA 57.209 32.000 0.00 0.00 41.97 4.75
5441 5556 7.170393 ACTTTCCATAAAATAAGGAAGCCAC 57.830 36.000 0.00 0.00 41.97 5.01
5442 5557 6.154534 ACTTTCCATAAAATAAGGAAGCCACC 59.845 38.462 0.00 0.00 41.97 4.61
5444 5559 4.953579 TCCATAAAATAAGGAAGCCACCAC 59.046 41.667 0.00 0.00 0.00 4.16
5445 5560 4.202010 CCATAAAATAAGGAAGCCACCACG 60.202 45.833 0.00 0.00 0.00 4.94
5446 5561 2.579410 AAATAAGGAAGCCACCACGT 57.421 45.000 0.00 0.00 0.00 4.49
5448 5563 3.706600 AATAAGGAAGCCACCACGTAA 57.293 42.857 0.00 0.00 0.00 3.18
5449 5564 3.926058 ATAAGGAAGCCACCACGTAAT 57.074 42.857 0.00 0.00 0.00 1.89
5452 5567 3.261981 AGGAAGCCACCACGTAATTAG 57.738 47.619 0.00 0.00 0.00 1.73
5454 5569 2.934553 GGAAGCCACCACGTAATTAGAC 59.065 50.000 0.00 0.00 0.00 2.59
5456 5571 3.688694 AGCCACCACGTAATTAGACAA 57.311 42.857 0.00 0.00 0.00 3.18
5476 5713 8.614994 AGACAAGAAACATTGTAAACTTTTCG 57.385 30.769 0.00 0.00 43.32 3.46
5478 5715 9.493206 GACAAGAAACATTGTAAACTTTTCGTA 57.507 29.630 0.00 0.00 43.32 3.43
5479 5716 9.498307 ACAAGAAACATTGTAAACTTTTCGTAG 57.502 29.630 0.00 0.00 41.53 3.51
5490 5727 9.701098 TGTAAACTTTTCGTAGAATGTCTATGT 57.299 29.630 4.79 0.00 45.90 2.29
5523 6304 6.643770 GTGATCAGCAGAAAACATTTGAACAT 59.356 34.615 0.00 0.00 0.00 2.71
5549 6330 2.811431 TCAACAGACCGCGATTGATTTT 59.189 40.909 8.23 0.00 0.00 1.82
5551 6332 1.468520 ACAGACCGCGATTGATTTTGG 59.531 47.619 8.23 0.00 0.00 3.28
5553 6334 2.095263 CAGACCGCGATTGATTTTGGTT 60.095 45.455 8.23 0.00 0.00 3.67
5554 6335 3.126171 CAGACCGCGATTGATTTTGGTTA 59.874 43.478 8.23 0.00 0.00 2.85
5556 6337 4.398044 AGACCGCGATTGATTTTGGTTATT 59.602 37.500 8.23 0.00 0.00 1.40
5557 6338 5.587043 AGACCGCGATTGATTTTGGTTATTA 59.413 36.000 8.23 0.00 0.00 0.98
5558 6339 6.094325 AGACCGCGATTGATTTTGGTTATTAA 59.906 34.615 8.23 0.00 0.00 1.40
5559 6340 6.262601 ACCGCGATTGATTTTGGTTATTAAG 58.737 36.000 8.23 0.00 0.00 1.85
5560 6341 6.094325 ACCGCGATTGATTTTGGTTATTAAGA 59.906 34.615 8.23 0.00 0.00 2.10
5577 6358 9.720667 GTTATTAAGAAACAAACTTGGTTACGT 57.279 29.630 0.00 0.00 38.41 3.57
5581 6362 6.505044 AGAAACAAACTTGGTTACGTTTCT 57.495 33.333 21.63 21.63 44.30 2.52
5600 6381 2.433664 ACGAAGGCCGGCGTAAAG 60.434 61.111 23.92 18.07 43.93 1.85
5603 6384 1.143969 CGAAGGCCGGCGTAAAGTAG 61.144 60.000 23.92 2.94 33.91 2.57
5650 6431 2.391879 CGTCGTCCTTCGGAAATATCC 58.608 52.381 0.00 0.00 42.80 2.59
5652 6435 2.101917 GTCGTCCTTCGGAAATATCCCA 59.898 50.000 0.00 0.00 43.37 4.37
5655 6438 2.112998 TCCTTCGGAAATATCCCACGT 58.887 47.619 0.00 0.00 43.37 4.49
5762 6571 2.505407 TCCATCAAACACCTCGATCCAT 59.495 45.455 0.00 0.00 0.00 3.41
5772 6581 1.075374 CCTCGATCCATCTCTCTCCCT 59.925 57.143 0.00 0.00 0.00 4.20
5773 6582 2.490718 CCTCGATCCATCTCTCTCCCTT 60.491 54.545 0.00 0.00 0.00 3.95
5833 6643 4.062032 GAACCCCCAAGAGCCCCC 62.062 72.222 0.00 0.00 0.00 5.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
469 477 5.169295 ACAACGACTCCAGTTATAAAGCTC 58.831 41.667 0.00 0.00 0.00 4.09
478 486 0.314302 CTCCGACAACGACTCCAGTT 59.686 55.000 0.00 0.00 42.66 3.16
512 520 3.281158 GGACAGAGGGAGTACTGAGTAC 58.719 54.545 14.69 14.69 39.10 2.73
518 526 2.599408 TTTCGGACAGAGGGAGTACT 57.401 50.000 0.00 0.00 0.00 2.73
519 527 3.889520 ATTTTCGGACAGAGGGAGTAC 57.110 47.619 0.00 0.00 0.00 2.73
520 528 4.607239 AGTATTTTCGGACAGAGGGAGTA 58.393 43.478 0.00 0.00 0.00 2.59
521 529 3.442076 AGTATTTTCGGACAGAGGGAGT 58.558 45.455 0.00 0.00 0.00 3.85
522 530 4.184629 CAAGTATTTTCGGACAGAGGGAG 58.815 47.826 0.00 0.00 0.00 4.30
523 531 3.581332 ACAAGTATTTTCGGACAGAGGGA 59.419 43.478 0.00 0.00 0.00 4.20
524 532 3.684788 CACAAGTATTTTCGGACAGAGGG 59.315 47.826 0.00 0.00 0.00 4.30
525 533 3.684788 CCACAAGTATTTTCGGACAGAGG 59.315 47.826 0.00 0.00 0.00 3.69
526 534 3.684788 CCCACAAGTATTTTCGGACAGAG 59.315 47.826 0.00 0.00 0.00 3.35
527 535 3.325425 TCCCACAAGTATTTTCGGACAGA 59.675 43.478 0.00 0.00 0.00 3.41
528 536 3.670625 TCCCACAAGTATTTTCGGACAG 58.329 45.455 0.00 0.00 0.00 3.51
529 537 3.325425 TCTCCCACAAGTATTTTCGGACA 59.675 43.478 0.00 0.00 0.00 4.02
530 538 3.934068 TCTCCCACAAGTATTTTCGGAC 58.066 45.455 0.00 0.00 0.00 4.79
531 539 4.627284 TTCTCCCACAAGTATTTTCGGA 57.373 40.909 0.00 0.00 0.00 4.55
532 540 5.183140 ACATTTCTCCCACAAGTATTTTCGG 59.817 40.000 0.00 0.00 0.00 4.30
533 541 6.149474 AGACATTTCTCCCACAAGTATTTTCG 59.851 38.462 0.00 0.00 0.00 3.46
534 542 7.454260 AGACATTTCTCCCACAAGTATTTTC 57.546 36.000 0.00 0.00 0.00 2.29
535 543 8.934023 TTAGACATTTCTCCCACAAGTATTTT 57.066 30.769 0.00 0.00 32.75 1.82
536 544 8.934023 TTTAGACATTTCTCCCACAAGTATTT 57.066 30.769 0.00 0.00 32.75 1.40
537 545 8.934023 TTTTAGACATTTCTCCCACAAGTATT 57.066 30.769 0.00 0.00 32.75 1.89
538 546 8.934023 TTTTTAGACATTTCTCCCACAAGTAT 57.066 30.769 0.00 0.00 32.75 2.12
539 547 8.792633 CATTTTTAGACATTTCTCCCACAAGTA 58.207 33.333 0.00 0.00 32.75 2.24
540 548 7.505585 TCATTTTTAGACATTTCTCCCACAAGT 59.494 33.333 0.00 0.00 32.75 3.16
541 549 7.885297 TCATTTTTAGACATTTCTCCCACAAG 58.115 34.615 0.00 0.00 32.75 3.16
542 550 7.831691 TCATTTTTAGACATTTCTCCCACAA 57.168 32.000 0.00 0.00 32.75 3.33
543 551 7.831691 TTCATTTTTAGACATTTCTCCCACA 57.168 32.000 0.00 0.00 32.75 4.17
544 552 8.306761 ACATTCATTTTTAGACATTTCTCCCAC 58.693 33.333 0.00 0.00 32.75 4.61
545 553 8.421249 ACATTCATTTTTAGACATTTCTCCCA 57.579 30.769 0.00 0.00 32.75 4.37
583 591 8.986991 GGAGGAATGGATGTATCTAGATGTATT 58.013 37.037 15.79 6.57 0.00 1.89
584 592 7.286546 CGGAGGAATGGATGTATCTAGATGTAT 59.713 40.741 15.79 9.11 0.00 2.29
585 593 6.603599 CGGAGGAATGGATGTATCTAGATGTA 59.396 42.308 15.79 4.44 0.00 2.29
586 594 5.420421 CGGAGGAATGGATGTATCTAGATGT 59.580 44.000 15.79 1.25 0.00 3.06
587 595 5.654209 TCGGAGGAATGGATGTATCTAGATG 59.346 44.000 15.79 0.00 0.00 2.90
588 596 5.654650 GTCGGAGGAATGGATGTATCTAGAT 59.345 44.000 10.73 10.73 0.00 1.98
589 597 5.010933 GTCGGAGGAATGGATGTATCTAGA 58.989 45.833 0.00 0.00 0.00 2.43
590 598 4.142578 CGTCGGAGGAATGGATGTATCTAG 60.143 50.000 0.00 0.00 0.00 2.43
591 599 3.756963 CGTCGGAGGAATGGATGTATCTA 59.243 47.826 0.00 0.00 0.00 1.98
592 600 2.558795 CGTCGGAGGAATGGATGTATCT 59.441 50.000 0.00 0.00 0.00 1.98
593 601 2.557056 TCGTCGGAGGAATGGATGTATC 59.443 50.000 0.00 0.00 0.00 2.24
594 602 2.558795 CTCGTCGGAGGAATGGATGTAT 59.441 50.000 1.73 0.00 36.61 2.29
595 603 1.954382 CTCGTCGGAGGAATGGATGTA 59.046 52.381 1.73 0.00 36.61 2.29
596 604 0.747255 CTCGTCGGAGGAATGGATGT 59.253 55.000 1.73 0.00 36.61 3.06
597 605 0.747255 ACTCGTCGGAGGAATGGATG 59.253 55.000 1.73 0.00 44.93 3.51
598 606 2.359981 TACTCGTCGGAGGAATGGAT 57.640 50.000 1.73 0.00 44.93 3.41
599 607 2.359981 ATACTCGTCGGAGGAATGGA 57.640 50.000 1.73 0.00 44.93 3.41
600 608 3.381949 GAAATACTCGTCGGAGGAATGG 58.618 50.000 1.73 0.00 44.93 3.16
601 609 3.381949 GGAAATACTCGTCGGAGGAATG 58.618 50.000 1.73 0.00 44.93 2.67
602 610 2.034305 CGGAAATACTCGTCGGAGGAAT 59.966 50.000 1.73 0.00 44.93 3.01
603 611 1.402968 CGGAAATACTCGTCGGAGGAA 59.597 52.381 1.73 0.00 44.93 3.36
604 612 1.019673 CGGAAATACTCGTCGGAGGA 58.980 55.000 0.00 0.00 44.93 3.71
605 613 0.030369 CCGGAAATACTCGTCGGAGG 59.970 60.000 0.00 0.00 44.93 4.30
606 614 1.019673 TCCGGAAATACTCGTCGGAG 58.980 55.000 0.00 0.00 43.84 4.63
607 615 0.734889 GTCCGGAAATACTCGTCGGA 59.265 55.000 5.23 0.00 46.06 4.55
608 616 0.452987 TGTCCGGAAATACTCGTCGG 59.547 55.000 5.23 0.00 41.80 4.79
609 617 1.399440 TCTGTCCGGAAATACTCGTCG 59.601 52.381 5.23 0.00 0.00 5.12
610 618 3.436496 CTTCTGTCCGGAAATACTCGTC 58.564 50.000 5.23 0.00 0.00 4.20
611 619 2.165845 CCTTCTGTCCGGAAATACTCGT 59.834 50.000 5.23 0.00 0.00 4.18
612 620 2.426024 TCCTTCTGTCCGGAAATACTCG 59.574 50.000 5.23 0.00 0.00 4.18
613 621 3.447944 ACTCCTTCTGTCCGGAAATACTC 59.552 47.826 5.23 0.00 0.00 2.59
614 622 3.442076 ACTCCTTCTGTCCGGAAATACT 58.558 45.455 5.23 0.00 0.00 2.12
615 623 3.889520 ACTCCTTCTGTCCGGAAATAC 57.110 47.619 5.23 0.00 0.00 1.89
616 624 4.346730 TGTACTCCTTCTGTCCGGAAATA 58.653 43.478 5.23 0.00 0.00 1.40
617 625 3.170717 TGTACTCCTTCTGTCCGGAAAT 58.829 45.455 5.23 0.00 0.00 2.17
618 626 2.600790 TGTACTCCTTCTGTCCGGAAA 58.399 47.619 5.23 0.00 0.00 3.13
619 627 2.297698 TGTACTCCTTCTGTCCGGAA 57.702 50.000 5.23 0.00 0.00 4.30
620 628 2.526888 ATGTACTCCTTCTGTCCGGA 57.473 50.000 0.00 0.00 0.00 5.14
621 629 4.939052 ATTATGTACTCCTTCTGTCCGG 57.061 45.455 0.00 0.00 0.00 5.14
622 630 6.802608 TGTTATTATGTACTCCTTCTGTCCG 58.197 40.000 0.00 0.00 0.00 4.79
623 631 7.210873 CCTGTTATTATGTACTCCTTCTGTCC 58.789 42.308 0.00 0.00 0.00 4.02
624 632 6.702282 GCCTGTTATTATGTACTCCTTCTGTC 59.298 42.308 0.00 0.00 0.00 3.51
625 633 6.408206 GGCCTGTTATTATGTACTCCTTCTGT 60.408 42.308 0.00 0.00 0.00 3.41
626 634 5.992217 GGCCTGTTATTATGTACTCCTTCTG 59.008 44.000 0.00 0.00 0.00 3.02
627 635 5.221461 CGGCCTGTTATTATGTACTCCTTCT 60.221 44.000 0.00 0.00 0.00 2.85
628 636 4.989168 CGGCCTGTTATTATGTACTCCTTC 59.011 45.833 0.00 0.00 0.00 3.46
629 637 4.742743 GCGGCCTGTTATTATGTACTCCTT 60.743 45.833 0.00 0.00 0.00 3.36
630 638 3.244112 GCGGCCTGTTATTATGTACTCCT 60.244 47.826 0.00 0.00 0.00 3.69
631 639 3.064931 GCGGCCTGTTATTATGTACTCC 58.935 50.000 0.00 0.00 0.00 3.85
632 640 3.741344 CAGCGGCCTGTTATTATGTACTC 59.259 47.826 0.00 0.00 34.31 2.59
633 641 3.728845 CAGCGGCCTGTTATTATGTACT 58.271 45.455 0.00 0.00 34.31 2.73
650 658 0.598419 TCTGCTCACACTTGACAGCG 60.598 55.000 0.00 0.00 33.95 5.18
673 681 4.969484 AGACTAAACGTTCTGTGGGATTT 58.031 39.130 0.00 0.00 0.00 2.17
674 682 4.618920 AGACTAAACGTTCTGTGGGATT 57.381 40.909 0.00 0.00 0.00 3.01
688 696 7.310485 GGTTTTCTCCTCTGGACATAGACTAAA 60.310 40.741 0.00 0.00 0.00 1.85
689 697 6.154706 GGTTTTCTCCTCTGGACATAGACTAA 59.845 42.308 0.00 0.00 0.00 2.24
690 698 5.657302 GGTTTTCTCCTCTGGACATAGACTA 59.343 44.000 0.00 0.00 0.00 2.59
807 815 5.975344 CCTTGCATACACACATGATCAATTC 59.025 40.000 0.00 0.00 0.00 2.17
850 858 4.100808 ACAATTTGTTTTCCTGCAGCCTAA 59.899 37.500 8.66 0.00 0.00 2.69
1164 1177 1.985159 AGGCAGAAGGACACATTGGTA 59.015 47.619 0.00 0.00 0.00 3.25
1184 1197 1.897423 CATGACACGCCTACCCAGA 59.103 57.895 0.00 0.00 0.00 3.86
1551 1564 5.316167 AGACAAGATTATTGCCAACACTGA 58.684 37.500 0.00 0.00 0.00 3.41
1552 1565 5.633830 AGACAAGATTATTGCCAACACTG 57.366 39.130 0.00 0.00 0.00 3.66
1553 1566 7.759489 TTAAGACAAGATTATTGCCAACACT 57.241 32.000 0.00 0.00 0.00 3.55
1554 1567 8.863049 CATTTAAGACAAGATTATTGCCAACAC 58.137 33.333 0.00 0.00 0.00 3.32
1576 1589 2.494073 ACCACGTGACACCAAAACATTT 59.506 40.909 19.30 0.00 0.00 2.32
1577 1590 2.096248 ACCACGTGACACCAAAACATT 58.904 42.857 19.30 0.00 0.00 2.71
1585 1598 3.721035 ACTAAACTTACCACGTGACACC 58.279 45.455 19.30 0.00 0.00 4.16
1593 1606 9.747293 CTAATCCTAGCTAACTAAACTTACCAC 57.253 37.037 0.00 0.00 0.00 4.16
1638 1651 3.244249 GCCTATCACATGGAGGACTAACC 60.244 52.174 8.85 0.00 39.35 2.85
1654 1667 1.687123 ACACATAGGGACACGCCTATC 59.313 52.381 0.00 0.00 36.66 2.08
1862 1880 8.945057 CCTCTCTTCTCTTTATTTCTTTTCTGG 58.055 37.037 0.00 0.00 0.00 3.86
1863 1881 8.450180 GCCTCTCTTCTCTTTATTTCTTTTCTG 58.550 37.037 0.00 0.00 0.00 3.02
1865 1883 8.233868 GTGCCTCTCTTCTCTTTATTTCTTTTC 58.766 37.037 0.00 0.00 0.00 2.29
1867 1885 6.370166 CGTGCCTCTCTTCTCTTTATTTCTTT 59.630 38.462 0.00 0.00 0.00 2.52
1869 1887 5.186021 TCGTGCCTCTCTTCTCTTTATTTCT 59.814 40.000 0.00 0.00 0.00 2.52
1870 1888 5.289917 GTCGTGCCTCTCTTCTCTTTATTTC 59.710 44.000 0.00 0.00 0.00 2.17
1902 1922 2.266554 CACGCAGAAACTTTTGCCAAA 58.733 42.857 0.00 0.00 37.00 3.28
1908 1928 2.227865 ACACACACACGCAGAAACTTTT 59.772 40.909 0.00 0.00 0.00 2.27
1910 1930 1.448985 ACACACACACGCAGAAACTT 58.551 45.000 0.00 0.00 0.00 2.66
1911 1931 1.396996 GAACACACACACGCAGAAACT 59.603 47.619 0.00 0.00 0.00 2.66
1912 1932 1.129624 TGAACACACACACGCAGAAAC 59.870 47.619 0.00 0.00 0.00 2.78
1913 1933 1.443802 TGAACACACACACGCAGAAA 58.556 45.000 0.00 0.00 0.00 2.52
1916 1936 0.111134 CGATGAACACACACACGCAG 60.111 55.000 0.00 0.00 0.00 5.18
1925 1945 4.754114 TCACATCAAATCACGATGAACACA 59.246 37.500 7.12 0.00 42.39 3.72
1964 1986 4.487714 TGGTATCTGACTGTTGGGATTC 57.512 45.455 0.00 0.00 0.00 2.52
1966 1988 3.846588 AGTTGGTATCTGACTGTTGGGAT 59.153 43.478 0.00 0.00 0.00 3.85
1968 1990 3.007940 TGAGTTGGTATCTGACTGTTGGG 59.992 47.826 0.00 0.00 0.00 4.12
1978 2000 6.114187 TGTTGAACAGATGAGTTGGTATCT 57.886 37.500 0.00 0.00 34.09 1.98
2012 2034 4.362677 TCCCAAAGGAGACATAGCTTAGT 58.637 43.478 0.00 0.00 37.19 2.24
2090 2112 3.437795 CGCTGCAGGCCAAGGAAG 61.438 66.667 17.12 0.00 37.74 3.46
2216 2238 2.771943 CAACATGGGGAGACTAAGGCTA 59.228 50.000 0.00 0.00 0.00 3.93
2571 2593 4.402155 TGATGTCAAGTTGCCAAGAAAAGT 59.598 37.500 0.00 0.00 0.00 2.66
2781 2803 3.571590 CAGTATAGTCAGGAAGGCCTCT 58.428 50.000 5.23 0.00 44.80 3.69
3921 3949 2.435586 CCTGACGGCCTGCTCAAG 60.436 66.667 0.00 0.00 0.00 3.02
3935 3963 2.753452 ACATTCAGCATCAAAGCTCCTG 59.247 45.455 0.00 0.00 44.54 3.86
4071 4099 3.882288 TCACTATTTTCAGTGTGCAAGCA 59.118 39.130 0.00 0.00 45.11 3.91
4072 4100 4.488126 TCACTATTTTCAGTGTGCAAGC 57.512 40.909 0.00 0.00 45.11 4.01
4220 4248 1.522355 ATGCGCCTTCATGTCCTCG 60.522 57.895 4.18 0.00 0.00 4.63
4299 4330 0.331278 TACCCAATTGTCCCTGGCAG 59.669 55.000 7.75 7.75 0.00 4.85
4418 4475 2.412065 GCAAGCTCTGTACAAGAAAGCG 60.412 50.000 0.00 0.00 32.62 4.68
4419 4476 2.412065 CGCAAGCTCTGTACAAGAAAGC 60.412 50.000 0.00 4.18 33.37 3.51
4526 4586 2.359975 CTCCAAGGAACACGGGGC 60.360 66.667 0.00 0.00 0.00 5.80
4650 4719 6.748658 TCGATGTAGTAGTATTGTTTTCGTGG 59.251 38.462 0.00 0.00 0.00 4.94
4654 4723 9.901724 CAATGTCGATGTAGTAGTATTGTTTTC 57.098 33.333 0.00 0.00 0.00 2.29
4658 4727 5.983720 GGCAATGTCGATGTAGTAGTATTGT 59.016 40.000 0.00 0.00 0.00 2.71
4675 4744 1.607467 GGGCAGTGGAAGGCAATGT 60.607 57.895 0.00 0.00 0.00 2.71
4731 4800 3.691342 TCGGCCGAACAGTCCAGG 61.691 66.667 28.99 0.00 0.00 4.45
4899 4971 8.697846 AAGAGAAACAATGCAATACATTCATG 57.302 30.769 0.00 0.00 46.28 3.07
4901 4973 7.884257 TGAAGAGAAACAATGCAATACATTCA 58.116 30.769 0.00 0.00 46.28 2.57
4902 4974 8.025445 ACTGAAGAGAAACAATGCAATACATTC 58.975 33.333 0.00 0.00 46.28 2.67
4905 4977 6.882610 ACTGAAGAGAAACAATGCAATACA 57.117 33.333 0.00 0.00 0.00 2.29
4906 4978 9.846248 ATTAACTGAAGAGAAACAATGCAATAC 57.154 29.630 0.00 0.00 0.00 1.89
4908 4980 9.199982 CAATTAACTGAAGAGAAACAATGCAAT 57.800 29.630 0.00 0.00 0.00 3.56
4909 4981 8.196771 ACAATTAACTGAAGAGAAACAATGCAA 58.803 29.630 0.00 0.00 0.00 4.08
4910 4982 7.715657 ACAATTAACTGAAGAGAAACAATGCA 58.284 30.769 0.00 0.00 0.00 3.96
4911 4983 9.118236 GTACAATTAACTGAAGAGAAACAATGC 57.882 33.333 0.00 0.00 0.00 3.56
4912 4984 9.612620 GGTACAATTAACTGAAGAGAAACAATG 57.387 33.333 0.00 0.00 0.00 2.82
4979 5064 2.111669 TGACAGCAGTGGCAGGTG 59.888 61.111 4.59 4.59 36.47 4.00
4995 5080 7.663081 ACTGCAGGTTTAGATGGTGATAATATG 59.337 37.037 19.93 0.00 0.00 1.78
5014 5099 1.081892 CGAGGAACATCAACTGCAGG 58.918 55.000 19.93 0.36 0.00 4.85
5022 5107 6.288941 TGTATTTACTTCCGAGGAACATCA 57.711 37.500 0.00 0.00 0.00 3.07
5023 5108 7.605410 TTTGTATTTACTTCCGAGGAACATC 57.395 36.000 0.00 0.00 0.00 3.06
5024 5109 7.827236 TGATTTGTATTTACTTCCGAGGAACAT 59.173 33.333 0.00 0.00 0.00 2.71
5025 5110 7.118680 GTGATTTGTATTTACTTCCGAGGAACA 59.881 37.037 0.00 0.00 0.00 3.18
5026 5111 7.333672 AGTGATTTGTATTTACTTCCGAGGAAC 59.666 37.037 0.00 0.00 0.00 3.62
5027 5112 7.333423 CAGTGATTTGTATTTACTTCCGAGGAA 59.667 37.037 4.34 4.34 0.00 3.36
5028 5113 6.816640 CAGTGATTTGTATTTACTTCCGAGGA 59.183 38.462 0.00 0.00 0.00 3.71
5029 5114 6.594159 ACAGTGATTTGTATTTACTTCCGAGG 59.406 38.462 0.00 0.00 0.00 4.63
5030 5115 7.596749 ACAGTGATTTGTATTTACTTCCGAG 57.403 36.000 0.00 0.00 0.00 4.63
5031 5116 9.146984 CTTACAGTGATTTGTATTTACTTCCGA 57.853 33.333 0.00 0.00 33.81 4.55
5032 5117 9.146984 TCTTACAGTGATTTGTATTTACTTCCG 57.853 33.333 0.00 0.00 33.81 4.30
5070 5158 2.158914 TGATGTTCCATCGGTCTCATGG 60.159 50.000 0.00 0.00 42.16 3.66
5082 5170 2.161855 GACCATGCACTTGATGTTCCA 58.838 47.619 0.00 0.00 0.00 3.53
5099 5195 3.884037 ATCCCAATTATCCCACTGACC 57.116 47.619 0.00 0.00 0.00 4.02
5103 5199 4.167892 TGCTACAATCCCAATTATCCCACT 59.832 41.667 0.00 0.00 0.00 4.00
5105 5201 4.469657 GTGCTACAATCCCAATTATCCCA 58.530 43.478 0.00 0.00 0.00 4.37
5106 5202 3.826729 GGTGCTACAATCCCAATTATCCC 59.173 47.826 0.00 0.00 0.00 3.85
5107 5203 3.502211 CGGTGCTACAATCCCAATTATCC 59.498 47.826 0.00 0.00 0.00 2.59
5108 5204 4.134563 ACGGTGCTACAATCCCAATTATC 58.865 43.478 0.00 0.00 0.00 1.75
5109 5205 4.134563 GACGGTGCTACAATCCCAATTAT 58.865 43.478 0.00 0.00 0.00 1.28
5110 5206 3.055021 TGACGGTGCTACAATCCCAATTA 60.055 43.478 0.00 0.00 0.00 1.40
5111 5207 2.290641 TGACGGTGCTACAATCCCAATT 60.291 45.455 0.00 0.00 0.00 2.32
5112 5208 1.280710 TGACGGTGCTACAATCCCAAT 59.719 47.619 0.00 0.00 0.00 3.16
5113 5209 0.687920 TGACGGTGCTACAATCCCAA 59.312 50.000 0.00 0.00 0.00 4.12
5114 5210 0.249120 CTGACGGTGCTACAATCCCA 59.751 55.000 0.00 0.00 0.00 4.37
5115 5211 1.090052 GCTGACGGTGCTACAATCCC 61.090 60.000 0.00 0.00 0.00 3.85
5116 5212 1.421410 CGCTGACGGTGCTACAATCC 61.421 60.000 0.00 0.00 34.97 3.01
5117 5213 0.736325 ACGCTGACGGTGCTACAATC 60.736 55.000 0.00 0.00 46.04 2.67
5118 5214 0.320421 AACGCTGACGGTGCTACAAT 60.320 50.000 0.00 0.00 46.04 2.71
5119 5215 1.068417 AACGCTGACGGTGCTACAA 59.932 52.632 0.00 0.00 46.04 2.41
5120 5216 2.732016 AACGCTGACGGTGCTACA 59.268 55.556 0.00 0.00 46.04 2.74
5126 5222 1.664965 GCTCTTCAACGCTGACGGT 60.665 57.895 0.00 0.00 46.04 4.83
5127 5223 1.016130 ATGCTCTTCAACGCTGACGG 61.016 55.000 0.00 0.00 46.04 4.79
5129 5225 2.578495 CAAATGCTCTTCAACGCTGAC 58.422 47.619 0.00 0.00 0.00 3.51
5130 5226 1.069022 GCAAATGCTCTTCAACGCTGA 60.069 47.619 0.00 0.00 38.21 4.26
5131 5227 1.334054 GCAAATGCTCTTCAACGCTG 58.666 50.000 0.00 0.00 38.21 5.18
5132 5228 3.780925 GCAAATGCTCTTCAACGCT 57.219 47.368 0.00 0.00 38.21 5.07
5183 5298 6.688637 TGTTCCTGAAATATTGAGCAGATG 57.311 37.500 12.35 1.33 0.00 2.90
5190 5305 8.420222 ACACATGTTTTGTTCCTGAAATATTGA 58.580 29.630 0.00 0.00 36.00 2.57
5199 5314 2.159128 TGCCACACATGTTTTGTTCCTG 60.159 45.455 0.00 0.00 36.00 3.86
5206 5321 4.178545 GCTAATCTGCCACACATGTTTT 57.821 40.909 0.00 0.00 0.00 2.43
5218 5333 4.150804 GCACGTATTTAGAGGCTAATCTGC 59.849 45.833 0.00 0.00 0.00 4.26
5232 5347 1.448985 AGCGGTTGATGCACGTATTT 58.551 45.000 0.00 0.00 33.85 1.40
5233 5348 2.303163 TAGCGGTTGATGCACGTATT 57.697 45.000 0.00 0.00 33.85 1.89
5235 5350 1.352114 GTTAGCGGTTGATGCACGTA 58.648 50.000 0.00 0.00 33.85 3.57
5236 5351 1.296056 GGTTAGCGGTTGATGCACGT 61.296 55.000 0.00 0.00 33.85 4.49
5239 5354 0.036164 AGTGGTTAGCGGTTGATGCA 59.964 50.000 0.00 0.00 33.85 3.96
5240 5355 1.135689 CAAGTGGTTAGCGGTTGATGC 60.136 52.381 0.00 0.00 0.00 3.91
5241 5356 2.151202 ACAAGTGGTTAGCGGTTGATG 58.849 47.619 0.00 0.00 0.00 3.07
5244 5359 2.676342 GGATACAAGTGGTTAGCGGTTG 59.324 50.000 0.00 0.00 0.00 3.77
5246 5361 2.685850 GGATACAAGTGGTTAGCGGT 57.314 50.000 0.00 0.00 0.00 5.68
5253 5368 9.591238 ATCACATGTTGAGTGGATACAAGTGGT 62.591 40.741 0.00 0.00 42.85 4.16
5254 5369 7.298747 ATCACATGTTGAGTGGATACAAGTGG 61.299 42.308 0.00 0.00 42.85 4.00
5255 5370 5.645067 ATCACATGTTGAGTGGATACAAGTG 59.355 40.000 0.00 0.00 42.85 3.16
5256 5371 5.809001 ATCACATGTTGAGTGGATACAAGT 58.191 37.500 0.00 0.00 42.85 3.16
5257 5372 6.748333 AATCACATGTTGAGTGGATACAAG 57.252 37.500 0.00 0.00 42.85 3.16
5259 5374 7.334171 CAGTAAATCACATGTTGAGTGGATACA 59.666 37.037 0.00 0.00 41.17 2.29
5260 5375 7.549134 TCAGTAAATCACATGTTGAGTGGATAC 59.451 37.037 0.00 0.00 37.77 2.24
5261 5376 7.549134 GTCAGTAAATCACATGTTGAGTGGATA 59.451 37.037 0.00 0.00 37.77 2.59
5262 5377 6.372659 GTCAGTAAATCACATGTTGAGTGGAT 59.627 38.462 0.00 0.00 37.77 3.41
5263 5378 5.700832 GTCAGTAAATCACATGTTGAGTGGA 59.299 40.000 0.00 0.00 37.77 4.02
5264 5379 5.389830 CGTCAGTAAATCACATGTTGAGTGG 60.390 44.000 0.00 0.00 37.77 4.00
5265 5380 5.389830 CCGTCAGTAAATCACATGTTGAGTG 60.390 44.000 0.00 0.00 37.77 3.51
5266 5381 4.690748 CCGTCAGTAAATCACATGTTGAGT 59.309 41.667 0.00 0.00 37.77 3.41
5268 5383 3.435327 GCCGTCAGTAAATCACATGTTGA 59.565 43.478 0.00 0.00 39.11 3.18
5270 5385 3.436704 CAGCCGTCAGTAAATCACATGTT 59.563 43.478 0.00 0.00 0.00 2.71
5274 5389 1.270571 TGCAGCCGTCAGTAAATCACA 60.271 47.619 0.00 0.00 0.00 3.58
5275 5390 1.394917 CTGCAGCCGTCAGTAAATCAC 59.605 52.381 0.00 0.00 0.00 3.06
5276 5391 1.275010 TCTGCAGCCGTCAGTAAATCA 59.725 47.619 9.47 0.00 33.48 2.57
5277 5392 2.010145 TCTGCAGCCGTCAGTAAATC 57.990 50.000 9.47 0.00 33.48 2.17
5278 5393 2.698855 ATCTGCAGCCGTCAGTAAAT 57.301 45.000 9.47 0.00 33.48 1.40
5279 5394 2.758423 TCTATCTGCAGCCGTCAGTAAA 59.242 45.455 9.47 0.00 33.48 2.01
5281 5396 1.676529 GTCTATCTGCAGCCGTCAGTA 59.323 52.381 9.47 0.00 33.48 2.74
5282 5397 0.457851 GTCTATCTGCAGCCGTCAGT 59.542 55.000 9.47 0.00 33.48 3.41
5283 5398 0.249238 GGTCTATCTGCAGCCGTCAG 60.249 60.000 9.47 1.29 0.00 3.51
5284 5399 0.970427 TGGTCTATCTGCAGCCGTCA 60.970 55.000 9.47 0.00 0.00 4.35
5287 5402 0.108186 TTGTGGTCTATCTGCAGCCG 60.108 55.000 9.47 0.00 0.00 5.52
5288 5403 1.661341 CTTGTGGTCTATCTGCAGCC 58.339 55.000 9.47 4.42 0.00 4.85
5290 5405 1.209019 AGGCTTGTGGTCTATCTGCAG 59.791 52.381 7.63 7.63 0.00 4.41
5291 5406 1.208052 GAGGCTTGTGGTCTATCTGCA 59.792 52.381 0.00 0.00 0.00 4.41
5292 5407 1.484240 AGAGGCTTGTGGTCTATCTGC 59.516 52.381 0.00 0.00 0.00 4.26
5293 5408 5.344743 TTTAGAGGCTTGTGGTCTATCTG 57.655 43.478 0.00 0.00 0.00 2.90
5294 5409 6.374417 TTTTTAGAGGCTTGTGGTCTATCT 57.626 37.500 0.00 0.00 0.00 1.98
5296 5411 8.275040 ACATATTTTTAGAGGCTTGTGGTCTAT 58.725 33.333 0.00 0.00 0.00 1.98
5298 5413 6.485171 ACATATTTTTAGAGGCTTGTGGTCT 58.515 36.000 0.00 0.00 0.00 3.85
5299 5414 6.759497 ACATATTTTTAGAGGCTTGTGGTC 57.241 37.500 0.00 0.00 0.00 4.02
5300 5415 6.719370 TCAACATATTTTTAGAGGCTTGTGGT 59.281 34.615 0.00 0.00 0.00 4.16
5301 5416 7.156876 TCAACATATTTTTAGAGGCTTGTGG 57.843 36.000 0.00 0.00 0.00 4.17
5303 5418 6.403636 CGCTCAACATATTTTTAGAGGCTTGT 60.404 38.462 0.00 0.00 0.00 3.16
5304 5419 5.967674 CGCTCAACATATTTTTAGAGGCTTG 59.032 40.000 0.00 0.00 0.00 4.01
5305 5420 5.449177 GCGCTCAACATATTTTTAGAGGCTT 60.449 40.000 0.00 0.00 0.00 4.35
5306 5421 4.035675 GCGCTCAACATATTTTTAGAGGCT 59.964 41.667 0.00 0.00 0.00 4.58
5308 5423 4.518217 CGCGCTCAACATATTTTTAGAGG 58.482 43.478 5.56 0.00 0.00 3.69
5309 5424 4.518217 CCGCGCTCAACATATTTTTAGAG 58.482 43.478 5.56 0.00 0.00 2.43
5310 5425 3.242608 GCCGCGCTCAACATATTTTTAGA 60.243 43.478 5.56 0.00 0.00 2.10
5311 5426 3.035942 GCCGCGCTCAACATATTTTTAG 58.964 45.455 5.56 0.00 0.00 1.85
5313 5428 1.201181 TGCCGCGCTCAACATATTTTT 59.799 42.857 5.56 0.00 0.00 1.94
5314 5429 0.808125 TGCCGCGCTCAACATATTTT 59.192 45.000 5.56 0.00 0.00 1.82
5315 5430 1.024271 ATGCCGCGCTCAACATATTT 58.976 45.000 5.56 0.00 0.00 1.40
5316 5431 1.877637 TATGCCGCGCTCAACATATT 58.122 45.000 5.56 0.00 0.00 1.28
5317 5432 2.099141 ATATGCCGCGCTCAACATAT 57.901 45.000 5.56 10.27 32.27 1.78
5318 5433 1.798223 GAATATGCCGCGCTCAACATA 59.202 47.619 5.56 8.32 0.00 2.29
5319 5434 0.588252 GAATATGCCGCGCTCAACAT 59.412 50.000 5.56 6.20 0.00 2.71
5320 5435 1.761244 CGAATATGCCGCGCTCAACA 61.761 55.000 5.56 0.00 0.00 3.33
5321 5436 1.083401 CGAATATGCCGCGCTCAAC 60.083 57.895 5.56 0.00 0.00 3.18
5323 5438 0.599991 ATTCGAATATGCCGCGCTCA 60.600 50.000 9.39 3.36 0.00 4.26
5324 5439 1.321743 CTATTCGAATATGCCGCGCTC 59.678 52.381 17.84 0.00 0.00 5.03
5325 5440 1.336887 ACTATTCGAATATGCCGCGCT 60.337 47.619 17.84 0.00 0.00 5.92
5327 5442 5.969435 TCTATTACTATTCGAATATGCCGCG 59.031 40.000 17.84 0.00 0.00 6.46
5328 5443 7.751047 TTCTATTACTATTCGAATATGCCGC 57.249 36.000 17.84 0.00 0.00 6.53
5348 5463 7.392393 GGCCAATTCTAAACCACTACTTTTCTA 59.608 37.037 0.00 0.00 0.00 2.10
5350 5465 6.208797 AGGCCAATTCTAAACCACTACTTTTC 59.791 38.462 5.01 0.00 0.00 2.29
5351 5466 6.075315 AGGCCAATTCTAAACCACTACTTTT 58.925 36.000 5.01 0.00 0.00 2.27
5353 5468 5.256806 AGGCCAATTCTAAACCACTACTT 57.743 39.130 5.01 0.00 0.00 2.24
5354 5469 4.929146 AGGCCAATTCTAAACCACTACT 57.071 40.909 5.01 0.00 0.00 2.57
5358 5473 6.071051 TCCAAATTAGGCCAATTCTAAACCAC 60.071 38.462 5.01 0.00 35.74 4.16
5359 5474 6.019748 TCCAAATTAGGCCAATTCTAAACCA 58.980 36.000 5.01 0.00 35.74 3.67
5361 5476 6.033966 CGTCCAAATTAGGCCAATTCTAAAC 58.966 40.000 5.01 5.69 35.74 2.01
5362 5477 5.712917 ACGTCCAAATTAGGCCAATTCTAAA 59.287 36.000 5.01 0.00 35.74 1.85
5363 5478 5.258051 ACGTCCAAATTAGGCCAATTCTAA 58.742 37.500 5.01 0.00 35.74 2.10
5364 5479 4.850680 ACGTCCAAATTAGGCCAATTCTA 58.149 39.130 5.01 0.00 35.74 2.10
5366 5481 4.638865 ACTACGTCCAAATTAGGCCAATTC 59.361 41.667 5.01 0.00 35.74 2.17
5367 5482 4.595986 ACTACGTCCAAATTAGGCCAATT 58.404 39.130 5.01 6.42 38.54 2.32
5368 5483 4.230745 ACTACGTCCAAATTAGGCCAAT 57.769 40.909 5.01 0.00 0.00 3.16
5370 5485 4.822685 TTACTACGTCCAAATTAGGCCA 57.177 40.909 5.01 0.00 0.00 5.36
5371 5486 6.519382 AGTATTACTACGTCCAAATTAGGCC 58.481 40.000 0.00 0.00 32.82 5.19
5378 5493 9.275398 ACATTTCAAAGTATTACTACGTCCAAA 57.725 29.630 0.00 0.00 32.82 3.28
5384 5499 9.525007 GTTCACACATTTCAAAGTATTACTACG 57.475 33.333 0.00 0.00 32.82 3.51
5387 5502 9.950680 CAAGTTCACACATTTCAAAGTATTACT 57.049 29.630 0.00 0.00 0.00 2.24
5392 5507 9.134734 GTTTTCAAGTTCACACATTTCAAAGTA 57.865 29.630 0.00 0.00 0.00 2.24
5393 5508 7.872483 AGTTTTCAAGTTCACACATTTCAAAGT 59.128 29.630 0.00 0.00 0.00 2.66
5394 5509 8.243289 AGTTTTCAAGTTCACACATTTCAAAG 57.757 30.769 0.00 0.00 0.00 2.77
5397 5512 7.330700 GGAAAGTTTTCAAGTTCACACATTTCA 59.669 33.333 6.90 0.00 38.92 2.69
5398 5513 7.330700 TGGAAAGTTTTCAAGTTCACACATTTC 59.669 33.333 6.90 0.00 38.92 2.17
5401 5516 6.279513 TGGAAAGTTTTCAAGTTCACACAT 57.720 33.333 6.90 0.00 38.92 3.21
5412 5527 9.705290 GCTTCCTTATTTTATGGAAAGTTTTCA 57.295 29.630 0.00 0.00 40.26 2.69
5414 5529 8.655901 TGGCTTCCTTATTTTATGGAAAGTTTT 58.344 29.630 0.00 0.00 40.26 2.43
5417 5532 6.154534 GGTGGCTTCCTTATTTTATGGAAAGT 59.845 38.462 0.00 0.00 40.26 2.66
5418 5533 6.154363 TGGTGGCTTCCTTATTTTATGGAAAG 59.846 38.462 0.00 0.00 40.26 2.62
5419 5534 6.019748 TGGTGGCTTCCTTATTTTATGGAAA 58.980 36.000 0.00 0.00 40.26 3.13
5421 5536 4.953579 GTGGTGGCTTCCTTATTTTATGGA 59.046 41.667 1.63 0.00 0.00 3.41
5424 5539 4.595986 ACGTGGTGGCTTCCTTATTTTAT 58.404 39.130 0.00 0.00 0.00 1.40
5425 5540 4.023726 ACGTGGTGGCTTCCTTATTTTA 57.976 40.909 0.00 0.00 0.00 1.52
5426 5541 2.871453 ACGTGGTGGCTTCCTTATTTT 58.129 42.857 0.00 0.00 0.00 1.82
5427 5542 2.579410 ACGTGGTGGCTTCCTTATTT 57.421 45.000 0.00 0.00 0.00 1.40
5428 5543 3.706600 TTACGTGGTGGCTTCCTTATT 57.293 42.857 0.00 0.00 0.00 1.40
5429 5544 3.926058 ATTACGTGGTGGCTTCCTTAT 57.074 42.857 0.00 0.00 0.00 1.73
5431 5546 2.579410 AATTACGTGGTGGCTTCCTT 57.421 45.000 0.00 0.00 0.00 3.36
5432 5547 2.835764 TCTAATTACGTGGTGGCTTCCT 59.164 45.455 0.00 0.00 0.00 3.36
5433 5548 2.934553 GTCTAATTACGTGGTGGCTTCC 59.065 50.000 0.00 0.00 0.00 3.46
5434 5549 3.592059 TGTCTAATTACGTGGTGGCTTC 58.408 45.455 0.00 0.00 0.00 3.86
5436 5551 3.259876 TCTTGTCTAATTACGTGGTGGCT 59.740 43.478 0.00 0.00 0.00 4.75
5437 5552 3.592059 TCTTGTCTAATTACGTGGTGGC 58.408 45.455 0.00 0.00 0.00 5.01
5439 5554 6.533819 TGTTTCTTGTCTAATTACGTGGTG 57.466 37.500 0.00 0.00 0.00 4.17
5440 5555 7.227910 ACAATGTTTCTTGTCTAATTACGTGGT 59.772 33.333 0.00 0.00 34.26 4.16
5441 5556 7.581476 ACAATGTTTCTTGTCTAATTACGTGG 58.419 34.615 0.00 0.00 34.26 4.94
5452 5567 8.389586 ACGAAAAGTTTACAATGTTTCTTGTC 57.610 30.769 0.00 0.00 39.88 3.18
5454 5569 9.710979 TCTACGAAAAGTTTACAATGTTTCTTG 57.289 29.630 0.00 0.00 0.00 3.02
5473 5710 9.701098 ACACTAAAAACATAGACATTCTACGAA 57.299 29.630 0.00 0.00 30.79 3.85
5474 5711 9.135843 CACACTAAAAACATAGACATTCTACGA 57.864 33.333 0.00 0.00 30.79 3.43
5475 5712 9.135843 TCACACTAAAAACATAGACATTCTACG 57.864 33.333 0.00 0.00 30.79 3.51
5478 5715 9.725019 TGATCACACTAAAAACATAGACATTCT 57.275 29.630 0.00 0.00 0.00 2.40
5479 5716 9.979270 CTGATCACACTAAAAACATAGACATTC 57.021 33.333 0.00 0.00 0.00 2.67
5483 5720 7.331934 TCTGCTGATCACACTAAAAACATAGAC 59.668 37.037 0.00 0.00 0.00 2.59
5484 5721 7.386059 TCTGCTGATCACACTAAAAACATAGA 58.614 34.615 0.00 0.00 0.00 1.98
5487 5724 6.882610 TTCTGCTGATCACACTAAAAACAT 57.117 33.333 0.00 0.00 0.00 2.71
5488 5725 6.691754 TTTCTGCTGATCACACTAAAAACA 57.308 33.333 0.00 0.00 0.00 2.83
5489 5726 6.972328 TGTTTTCTGCTGATCACACTAAAAAC 59.028 34.615 15.20 15.20 35.64 2.43
5490 5727 7.094508 TGTTTTCTGCTGATCACACTAAAAA 57.905 32.000 0.00 0.00 0.00 1.94
5523 6304 0.673333 ATCGCGGTCTGTTGATTGCA 60.673 50.000 6.13 0.00 0.00 4.08
5551 6332 9.720667 ACGTAACCAAGTTTGTTTCTTAATAAC 57.279 29.630 0.00 0.00 0.00 1.89
5554 6335 9.292846 GAAACGTAACCAAGTTTGTTTCTTAAT 57.707 29.630 19.76 0.85 41.23 1.40
5556 6337 8.042944 AGAAACGTAACCAAGTTTGTTTCTTA 57.957 30.769 21.92 0.00 45.83 2.10
5557 6338 6.916440 AGAAACGTAACCAAGTTTGTTTCTT 58.084 32.000 21.92 13.40 45.83 2.52
5558 6339 6.505044 AGAAACGTAACCAAGTTTGTTTCT 57.495 33.333 21.92 21.92 44.77 2.52
5559 6340 6.249893 GTGAGAAACGTAACCAAGTTTGTTTC 59.750 38.462 19.59 19.59 42.72 2.78
5560 6341 6.088173 GTGAGAAACGTAACCAAGTTTGTTT 58.912 36.000 0.00 9.07 40.24 2.83
5581 6362 3.223710 TTTACGCCGGCCTTCGTGA 62.224 57.895 23.46 15.74 39.46 4.35
5592 6373 2.257034 CGTGGACTTCTACTTTACGCC 58.743 52.381 0.00 0.00 0.00 5.68
5647 6428 3.117372 GATCCGTCGACGTGGGAT 58.883 61.111 33.49 27.56 43.09 3.85
5669 6452 3.775654 CTGGAGAGGTCGTGGGGC 61.776 72.222 0.00 0.00 0.00 5.80
5676 6459 2.672098 TGGATTAGAGCTGGAGAGGTC 58.328 52.381 0.00 0.00 45.57 3.85
5678 6461 3.037549 AGTTGGATTAGAGCTGGAGAGG 58.962 50.000 0.00 0.00 0.00 3.69
5762 6571 3.077556 GGCGGCAAGGGAGAGAGA 61.078 66.667 3.07 0.00 0.00 3.10
5801 6611 4.056584 TTCGAGGGGGCGGAGAGA 62.057 66.667 0.00 0.00 0.00 3.10
5813 6623 2.269241 GGCTCTTGGGGGTTCGAG 59.731 66.667 0.00 0.00 0.00 4.04
5833 6643 1.002502 GGGGAAAGGTTGGAGACGG 60.003 63.158 0.00 0.00 0.00 4.79
5836 6646 0.909623 GATCGGGGAAAGGTTGGAGA 59.090 55.000 0.00 0.00 0.00 3.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.