Multiple sequence alignment - TraesCS2B01G518900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G518900 chr2B 100.000 3571 0 0 1 3571 713789991 713793561 0.000000e+00 6595.0
1 TraesCS2B01G518900 chr2B 90.996 1577 108 22 1081 2637 713940382 713938820 0.000000e+00 2095.0
2 TraesCS2B01G518900 chr2B 86.418 1340 170 7 1118 2451 712889718 712891051 0.000000e+00 1456.0
3 TraesCS2B01G518900 chr2B 89.879 247 23 2 40 285 661176729 661176974 2.070000e-82 316.0
4 TraesCS2B01G518900 chr2B 87.649 251 29 2 40 289 133122982 133123231 1.250000e-74 291.0
5 TraesCS2B01G518900 chr2B 86.585 164 19 2 480 641 765197871 765198033 1.020000e-40 178.0
6 TraesCS2B01G518900 chr2D 92.467 2031 94 23 671 2688 589522334 589524318 0.000000e+00 2848.0
7 TraesCS2B01G518900 chr2D 92.565 1587 85 23 932 2496 589685044 589683469 0.000000e+00 2246.0
8 TraesCS2B01G518900 chr2D 86.622 1338 171 6 1118 2451 589282292 589283625 0.000000e+00 1472.0
9 TraesCS2B01G518900 chr2D 78.614 505 103 3 2973 3476 111500393 111499893 2.660000e-86 329.0
10 TraesCS2B01G518900 chr2D 88.353 249 28 1 38 285 577086199 577085951 7.490000e-77 298.0
11 TraesCS2B01G518900 chr2D 87.854 247 29 1 40 285 543814117 543814363 4.510000e-74 289.0
12 TraesCS2B01G518900 chr2D 84.643 280 30 8 22 288 640312846 640312567 2.110000e-67 267.0
13 TraesCS2B01G518900 chr2D 90.291 103 9 1 285 386 589521728 589521830 2.240000e-27 134.0
14 TraesCS2B01G518900 chr2A 91.709 1990 89 33 639 2596 723866743 723868688 0.000000e+00 2691.0
15 TraesCS2B01G518900 chr2A 89.532 1729 113 36 932 2652 724018632 724016964 0.000000e+00 2128.0
16 TraesCS2B01G518900 chr2A 86.313 1337 177 5 1118 2451 723625334 723626667 0.000000e+00 1450.0
17 TraesCS2B01G518900 chr2A 78.214 739 129 17 2744 3453 723882552 723883287 9.100000e-121 444.0
18 TraesCS2B01G518900 chr2A 76.240 766 133 24 2742 3471 17035158 17035910 9.420000e-96 361.0
19 TraesCS2B01G518900 chr2A 86.822 258 30 4 40 295 768425261 768425516 5.840000e-73 285.0
20 TraesCS2B01G518900 chr2A 73.226 620 130 21 2872 3476 617725422 617726020 3.640000e-45 193.0
21 TraesCS2B01G518900 chr2A 86.585 164 18 4 492 653 778431163 778431002 1.020000e-40 178.0
22 TraesCS2B01G518900 chr2A 89.381 113 10 1 2592 2702 723868943 723869055 1.340000e-29 141.0
23 TraesCS2B01G518900 chr7B 78.437 1331 242 30 1126 2440 679359683 679360984 0.000000e+00 826.0
24 TraesCS2B01G518900 chr7B 77.049 732 133 18 2742 3442 709518555 709517828 4.320000e-104 388.0
25 TraesCS2B01G518900 chr7B 87.952 249 29 1 40 287 706164916 706164668 3.490000e-75 292.0
26 TraesCS2B01G518900 chr7B 80.233 86 12 5 396 480 675975684 675975765 3.850000e-05 60.2
27 TraesCS2B01G518900 chr4A 76.723 769 137 23 2743 3474 478576997 478576234 1.200000e-104 390.0
28 TraesCS2B01G518900 chr4A 87.261 157 16 4 496 650 714215269 714215115 3.660000e-40 176.0
29 TraesCS2B01G518900 chr3D 78.558 541 106 4 2943 3476 504978623 504978086 7.340000e-92 348.0
30 TraesCS2B01G518900 chr3D 76.557 610 133 7 2876 3476 85219155 85219763 3.440000e-85 326.0
31 TraesCS2B01G518900 chr3D 87.352 253 30 2 40 290 279938992 279938740 4.510000e-74 289.0
32 TraesCS2B01G518900 chr3D 89.933 149 11 4 496 641 571465513 571465366 4.710000e-44 189.0
33 TraesCS2B01G518900 chr3D 89.933 149 11 4 496 641 579494807 579494954 4.710000e-44 189.0
34 TraesCS2B01G518900 chr3D 80.769 130 21 4 2741 2868 113020861 113020988 8.160000e-17 99.0
35 TraesCS2B01G518900 chr7D 75.290 777 142 29 2742 3476 245363030 245362262 3.440000e-85 326.0
36 TraesCS2B01G518900 chr7D 78.218 505 106 3 2973 3476 23580868 23581369 1.600000e-83 320.0
37 TraesCS2B01G518900 chr7D 78.795 415 51 14 2742 3120 185370269 185370682 9.900000e-61 244.0
38 TraesCS2B01G518900 chr7D 86.747 166 17 3 479 640 535938538 535938374 2.830000e-41 180.0
39 TraesCS2B01G518900 chr7D 83.654 104 16 1 2753 2856 594800210 594800108 2.930000e-16 97.1
40 TraesCS2B01G518900 chr1D 75.226 775 138 30 2742 3476 488635775 488635015 5.750000e-83 318.0
41 TraesCS2B01G518900 chr1D 78.070 228 20 17 22 230 50988063 50988279 2.250000e-22 117.0
42 TraesCS2B01G518900 chr3A 79.167 456 87 7 3024 3476 474070160 474069710 3.460000e-80 309.0
43 TraesCS2B01G518900 chr5B 77.535 503 106 5 2975 3476 122141652 122141156 2.700000e-76 296.0
44 TraesCS2B01G518900 chr5B 85.246 61 7 2 421 480 631360769 631360710 1.070000e-05 62.1
45 TraesCS2B01G518900 chr3B 88.163 245 28 1 40 283 538630664 538630908 1.250000e-74 291.0
46 TraesCS2B01G518900 chr3B 73.446 772 166 21 2741 3476 758924837 758925605 1.650000e-63 254.0
47 TraesCS2B01G518900 chr3B 73.295 704 143 30 2802 3476 773383641 773384328 2.160000e-52 217.0
48 TraesCS2B01G518900 chr3B 87.654 162 17 3 481 640 243784045 243784205 6.090000e-43 185.0
49 TraesCS2B01G518900 chr6A 87.903 248 26 4 40 285 592524568 592524813 4.510000e-74 289.0
50 TraesCS2B01G518900 chr6A 84.831 178 19 7 478 650 33015814 33015640 4.740000e-39 172.0
51 TraesCS2B01G518900 chr4B 86.310 168 17 5 479 642 802521 802356 1.020000e-40 178.0
52 TraesCS2B01G518900 chr4B 80.531 113 22 0 3364 3476 591121366 591121254 1.770000e-13 87.9
53 TraesCS2B01G518900 chr1A 85.938 128 16 2 2742 2868 554302519 554302393 6.220000e-28 135.0
54 TraesCS2B01G518900 chr1A 79.213 178 36 1 54 230 50104562 50104739 4.840000e-24 122.0
55 TraesCS2B01G518900 chr1A 77.477 222 37 6 22 230 50265910 50266131 1.740000e-23 121.0
56 TraesCS2B01G518900 chr1A 77.477 222 37 5 22 230 50287004 50287225 1.740000e-23 121.0
57 TraesCS2B01G518900 chr1A 78.652 178 37 1 54 230 50145295 50145472 2.250000e-22 117.0
58 TraesCS2B01G518900 chr1A 76.887 212 36 6 22 220 50291282 50291493 1.360000e-19 108.0
59 TraesCS2B01G518900 chr1A 80.255 157 18 5 22 165 50302316 50302472 4.880000e-19 106.0
60 TraesCS2B01G518900 chr6D 82.308 130 23 0 2739 2868 299046465 299046594 2.910000e-21 113.0
61 TraesCS2B01G518900 chr7A 78.400 125 27 0 3352 3476 592204913 592205037 8.220000e-12 82.4
62 TraesCS2B01G518900 chrUn 84.286 70 9 2 411 479 60988485 60988553 2.300000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G518900 chr2B 713789991 713793561 3570 False 6595 6595 100.000 1 3571 1 chr2B.!!$F4 3570
1 TraesCS2B01G518900 chr2B 713938820 713940382 1562 True 2095 2095 90.996 1081 2637 1 chr2B.!!$R1 1556
2 TraesCS2B01G518900 chr2B 712889718 712891051 1333 False 1456 1456 86.418 1118 2451 1 chr2B.!!$F3 1333
3 TraesCS2B01G518900 chr2D 589683469 589685044 1575 True 2246 2246 92.565 932 2496 1 chr2D.!!$R3 1564
4 TraesCS2B01G518900 chr2D 589521728 589524318 2590 False 1491 2848 91.379 285 2688 2 chr2D.!!$F3 2403
5 TraesCS2B01G518900 chr2D 589282292 589283625 1333 False 1472 1472 86.622 1118 2451 1 chr2D.!!$F2 1333
6 TraesCS2B01G518900 chr2D 111499893 111500393 500 True 329 329 78.614 2973 3476 1 chr2D.!!$R1 503
7 TraesCS2B01G518900 chr2A 724016964 724018632 1668 True 2128 2128 89.532 932 2652 1 chr2A.!!$R1 1720
8 TraesCS2B01G518900 chr2A 723625334 723626667 1333 False 1450 1450 86.313 1118 2451 1 chr2A.!!$F3 1333
9 TraesCS2B01G518900 chr2A 723866743 723869055 2312 False 1416 2691 90.545 639 2702 2 chr2A.!!$F6 2063
10 TraesCS2B01G518900 chr2A 723882552 723883287 735 False 444 444 78.214 2744 3453 1 chr2A.!!$F4 709
11 TraesCS2B01G518900 chr2A 17035158 17035910 752 False 361 361 76.240 2742 3471 1 chr2A.!!$F1 729
12 TraesCS2B01G518900 chr7B 679359683 679360984 1301 False 826 826 78.437 1126 2440 1 chr7B.!!$F2 1314
13 TraesCS2B01G518900 chr7B 709517828 709518555 727 True 388 388 77.049 2742 3442 1 chr7B.!!$R2 700
14 TraesCS2B01G518900 chr4A 478576234 478576997 763 True 390 390 76.723 2743 3474 1 chr4A.!!$R1 731
15 TraesCS2B01G518900 chr3D 504978086 504978623 537 True 348 348 78.558 2943 3476 1 chr3D.!!$R2 533
16 TraesCS2B01G518900 chr3D 85219155 85219763 608 False 326 326 76.557 2876 3476 1 chr3D.!!$F1 600
17 TraesCS2B01G518900 chr7D 245362262 245363030 768 True 326 326 75.290 2742 3476 1 chr7D.!!$R1 734
18 TraesCS2B01G518900 chr7D 23580868 23581369 501 False 320 320 78.218 2973 3476 1 chr7D.!!$F1 503
19 TraesCS2B01G518900 chr1D 488635015 488635775 760 True 318 318 75.226 2742 3476 1 chr1D.!!$R1 734
20 TraesCS2B01G518900 chr3B 758924837 758925605 768 False 254 254 73.446 2741 3476 1 chr3B.!!$F3 735
21 TraesCS2B01G518900 chr3B 773383641 773384328 687 False 217 217 73.295 2802 3476 1 chr3B.!!$F4 674

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
946 1325 0.162082 CACAAAATGCATGCACGCAC 59.838 50.000 25.37 0.0 46.56 5.34 F
1068 1479 0.952010 GAACACCCATACCGCACGTT 60.952 55.000 0.00 0.0 0.00 3.99 F
2501 2981 1.001181 GCCAATGTGTGCCTGATGTTT 59.999 47.619 0.00 0.0 0.00 2.83 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1811 2276 0.031178 GGCTGAAGTGCACCTTGTTG 59.969 55.0 14.63 0.42 32.03 3.33 R
2505 2985 0.039256 GCCAATGTGTGCGTGATGTT 60.039 50.0 0.00 0.00 0.00 2.71 R
3513 4315 0.179073 CCTTCATCCGCCGTCTTCAT 60.179 55.0 0.00 0.00 0.00 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.708563 GCCAGTCTAGACTTAGCTCAG 57.291 52.381 26.76 14.49 40.20 3.35
21 22 3.020984 GCCAGTCTAGACTTAGCTCAGT 58.979 50.000 26.76 0.00 40.20 3.41
22 23 3.445805 GCCAGTCTAGACTTAGCTCAGTT 59.554 47.826 26.76 3.38 40.20 3.16
23 24 4.641094 GCCAGTCTAGACTTAGCTCAGTTA 59.359 45.833 26.76 0.00 40.20 2.24
24 25 5.220970 GCCAGTCTAGACTTAGCTCAGTTAG 60.221 48.000 26.76 12.35 40.20 2.34
25 26 5.298276 CCAGTCTAGACTTAGCTCAGTTAGG 59.702 48.000 23.01 12.18 40.20 2.69
26 27 5.883673 CAGTCTAGACTTAGCTCAGTTAGGT 59.116 44.000 23.01 0.00 40.20 3.08
27 28 6.376018 CAGTCTAGACTTAGCTCAGTTAGGTT 59.624 42.308 23.01 0.00 40.20 3.50
28 29 6.376018 AGTCTAGACTTAGCTCAGTTAGGTTG 59.624 42.308 20.00 0.00 38.83 3.77
29 30 4.810191 AGACTTAGCTCAGTTAGGTTGG 57.190 45.455 1.29 0.00 37.13 3.77
30 31 4.161102 AGACTTAGCTCAGTTAGGTTGGT 58.839 43.478 1.29 0.00 37.13 3.67
31 32 4.221041 AGACTTAGCTCAGTTAGGTTGGTC 59.779 45.833 1.29 0.00 37.13 4.02
32 33 3.056749 ACTTAGCTCAGTTAGGTTGGTCG 60.057 47.826 0.00 0.00 37.13 4.79
33 34 1.339097 AGCTCAGTTAGGTTGGTCGT 58.661 50.000 0.00 0.00 29.36 4.34
34 35 2.522185 AGCTCAGTTAGGTTGGTCGTA 58.478 47.619 0.00 0.00 29.36 3.43
35 36 2.895404 AGCTCAGTTAGGTTGGTCGTAA 59.105 45.455 0.00 0.00 29.36 3.18
36 37 3.514309 AGCTCAGTTAGGTTGGTCGTAAT 59.486 43.478 0.00 0.00 29.36 1.89
37 38 3.617263 GCTCAGTTAGGTTGGTCGTAATG 59.383 47.826 0.00 0.00 0.00 1.90
38 39 4.181578 CTCAGTTAGGTTGGTCGTAATGG 58.818 47.826 0.00 0.00 0.00 3.16
39 40 3.579586 TCAGTTAGGTTGGTCGTAATGGT 59.420 43.478 0.00 0.00 0.00 3.55
40 41 4.771577 TCAGTTAGGTTGGTCGTAATGGTA 59.228 41.667 0.00 0.00 0.00 3.25
41 42 5.105635 TCAGTTAGGTTGGTCGTAATGGTAG 60.106 44.000 0.00 0.00 0.00 3.18
42 43 4.774200 AGTTAGGTTGGTCGTAATGGTAGT 59.226 41.667 0.00 0.00 0.00 2.73
43 44 5.951747 AGTTAGGTTGGTCGTAATGGTAGTA 59.048 40.000 0.00 0.00 0.00 1.82
44 45 6.608808 AGTTAGGTTGGTCGTAATGGTAGTAT 59.391 38.462 0.00 0.00 0.00 2.12
45 46 5.526506 AGGTTGGTCGTAATGGTAGTATC 57.473 43.478 0.00 0.00 0.00 2.24
46 47 4.957954 AGGTTGGTCGTAATGGTAGTATCA 59.042 41.667 0.00 0.00 0.00 2.15
47 48 5.601313 AGGTTGGTCGTAATGGTAGTATCAT 59.399 40.000 0.00 0.00 0.00 2.45
48 49 6.779049 AGGTTGGTCGTAATGGTAGTATCATA 59.221 38.462 0.00 0.00 0.00 2.15
49 50 6.865205 GGTTGGTCGTAATGGTAGTATCATAC 59.135 42.308 0.00 0.00 0.00 2.39
50 51 7.428020 GTTGGTCGTAATGGTAGTATCATACA 58.572 38.462 0.00 0.00 0.00 2.29
51 52 7.770366 TGGTCGTAATGGTAGTATCATACAT 57.230 36.000 0.00 0.00 0.00 2.29
52 53 8.866970 TGGTCGTAATGGTAGTATCATACATA 57.133 34.615 0.00 0.00 0.00 2.29
53 54 8.733458 TGGTCGTAATGGTAGTATCATACATAC 58.267 37.037 0.00 0.00 0.00 2.39
54 55 8.186821 GGTCGTAATGGTAGTATCATACATACC 58.813 40.741 12.93 12.93 38.53 2.73
77 78 8.592105 ACCAACTAAACAATTTTGATGATGTG 57.408 30.769 0.00 0.00 0.00 3.21
78 79 8.203485 ACCAACTAAACAATTTTGATGATGTGT 58.797 29.630 0.00 0.00 0.00 3.72
79 80 8.702438 CCAACTAAACAATTTTGATGATGTGTC 58.298 33.333 0.00 0.00 0.00 3.67
80 81 9.247126 CAACTAAACAATTTTGATGATGTGTCA 57.753 29.630 0.00 0.00 39.04 3.58
145 146 8.962884 TGATACCGCATCATAATAAATGCTAT 57.037 30.769 5.86 0.00 44.81 2.97
150 151 9.314321 ACCGCATCATAATAAATGCTATACTAC 57.686 33.333 5.86 0.00 44.81 2.73
151 152 9.534565 CCGCATCATAATAAATGCTATACTACT 57.465 33.333 5.86 0.00 44.81 2.57
163 164 6.790232 TGCTATACTACTATATGGCATGCA 57.210 37.500 21.36 6.13 42.21 3.96
164 165 7.365497 TGCTATACTACTATATGGCATGCAT 57.635 36.000 21.36 13.33 42.21 3.96
165 166 8.477419 TGCTATACTACTATATGGCATGCATA 57.523 34.615 21.36 15.05 42.21 3.14
166 167 8.923270 TGCTATACTACTATATGGCATGCATAA 58.077 33.333 21.36 4.56 42.21 1.90
167 168 9.764363 GCTATACTACTATATGGCATGCATAAA 57.236 33.333 21.36 1.71 38.53 1.40
219 220 8.072321 ACATATGGTACTATGCATTAGAGAGG 57.928 38.462 3.54 0.00 33.26 3.69
220 221 7.676043 ACATATGGTACTATGCATTAGAGAGGT 59.324 37.037 3.54 0.00 33.26 3.85
221 222 9.190317 CATATGGTACTATGCATTAGAGAGGTA 57.810 37.037 3.54 0.00 0.00 3.08
222 223 7.710676 ATGGTACTATGCATTAGAGAGGTAG 57.289 40.000 3.54 0.00 0.00 3.18
223 224 6.611785 TGGTACTATGCATTAGAGAGGTAGT 58.388 40.000 3.54 0.88 0.00 2.73
224 225 7.752638 TGGTACTATGCATTAGAGAGGTAGTA 58.247 38.462 3.54 0.00 0.00 1.82
225 226 8.391699 TGGTACTATGCATTAGAGAGGTAGTAT 58.608 37.037 3.54 0.00 0.00 2.12
226 227 9.245481 GGTACTATGCATTAGAGAGGTAGTATT 57.755 37.037 3.54 0.00 0.00 1.89
233 234 9.809395 TGCATTAGAGAGGTAGTATTATACACT 57.191 33.333 5.11 0.12 0.00 3.55
282 283 5.521906 TGATACTCCTCACTACAATCAGC 57.478 43.478 0.00 0.00 0.00 4.26
283 284 4.342378 TGATACTCCTCACTACAATCAGCC 59.658 45.833 0.00 0.00 0.00 4.85
323 324 8.877864 TTAATTCAAATTCATGTGGTCCTAGT 57.122 30.769 0.00 0.00 0.00 2.57
330 331 2.430694 TCATGTGGTCCTAGTCCAATCG 59.569 50.000 5.62 0.00 36.68 3.34
339 340 2.570181 GTCCAATCGACCGGACGT 59.430 61.111 24.75 10.50 42.19 4.34
343 344 0.596600 CCAATCGACCGGACGTATGG 60.597 60.000 26.71 26.71 35.40 2.74
349 350 1.605710 CGACCGGACGTATGGATTAGT 59.394 52.381 18.29 0.00 0.00 2.24
355 356 5.413833 ACCGGACGTATGGATTAGTATGTAG 59.586 44.000 9.46 0.00 0.00 2.74
373 374 3.875727 TGTAGTAGACCAGTCATCGTAGC 59.124 47.826 0.00 0.00 0.00 3.58
382 383 5.116882 ACCAGTCATCGTAGCCTATTTTTC 58.883 41.667 0.00 0.00 0.00 2.29
383 384 4.209288 CCAGTCATCGTAGCCTATTTTTCG 59.791 45.833 0.00 0.00 0.00 3.46
384 385 3.802685 AGTCATCGTAGCCTATTTTTCGC 59.197 43.478 0.00 0.00 0.00 4.70
386 387 2.676632 TCGTAGCCTATTTTTCGCCA 57.323 45.000 0.00 0.00 0.00 5.69
388 389 1.003866 CGTAGCCTATTTTTCGCCAGC 60.004 52.381 0.00 0.00 0.00 4.85
389 390 2.289565 GTAGCCTATTTTTCGCCAGCT 58.710 47.619 0.00 0.00 0.00 4.24
390 391 1.383523 AGCCTATTTTTCGCCAGCTC 58.616 50.000 0.00 0.00 0.00 4.09
391 392 1.065126 AGCCTATTTTTCGCCAGCTCT 60.065 47.619 0.00 0.00 0.00 4.09
394 395 2.749621 CCTATTTTTCGCCAGCTCTTGT 59.250 45.455 0.00 0.00 0.00 3.16
395 396 3.191371 CCTATTTTTCGCCAGCTCTTGTT 59.809 43.478 0.00 0.00 0.00 2.83
396 397 3.733443 ATTTTTCGCCAGCTCTTGTTT 57.267 38.095 0.00 0.00 0.00 2.83
398 399 3.518634 TTTTCGCCAGCTCTTGTTTTT 57.481 38.095 0.00 0.00 0.00 1.94
438 695 2.616634 AGGCTACATGCATCACTCTG 57.383 50.000 0.00 0.00 45.15 3.35
454 711 0.762082 TCTGATGCAGAGGCTAGGGG 60.762 60.000 0.00 0.00 41.91 4.79
467 724 1.006043 GCTAGGGGCTTTCCTCCTTTT 59.994 52.381 0.00 0.00 38.30 2.27
541 798 8.879342 ATTTCACTATAGACAACATACTGAGC 57.121 34.615 6.78 0.00 0.00 4.26
542 799 7.404671 TTCACTATAGACAACATACTGAGCA 57.595 36.000 6.78 0.00 0.00 4.26
543 800 7.404671 TCACTATAGACAACATACTGAGCAA 57.595 36.000 6.78 0.00 0.00 3.91
544 801 7.836842 TCACTATAGACAACATACTGAGCAAA 58.163 34.615 6.78 0.00 0.00 3.68
545 802 8.311109 TCACTATAGACAACATACTGAGCAAAA 58.689 33.333 6.78 0.00 0.00 2.44
546 803 9.102757 CACTATAGACAACATACTGAGCAAAAT 57.897 33.333 6.78 0.00 0.00 1.82
547 804 9.102757 ACTATAGACAACATACTGAGCAAAATG 57.897 33.333 6.78 0.00 0.00 2.32
548 805 9.317936 CTATAGACAACATACTGAGCAAAATGA 57.682 33.333 0.00 0.00 0.00 2.57
549 806 6.492007 AGACAACATACTGAGCAAAATGAG 57.508 37.500 0.00 0.00 0.00 2.90
550 807 6.000219 AGACAACATACTGAGCAAAATGAGT 59.000 36.000 0.00 0.00 0.00 3.41
551 808 6.005583 ACAACATACTGAGCAAAATGAGTG 57.994 37.500 0.00 0.00 0.00 3.51
552 809 5.764686 ACAACATACTGAGCAAAATGAGTGA 59.235 36.000 0.00 0.00 0.00 3.41
553 810 6.262944 ACAACATACTGAGCAAAATGAGTGAA 59.737 34.615 0.00 0.00 0.00 3.18
554 811 7.040201 ACAACATACTGAGCAAAATGAGTGAAT 60.040 33.333 0.00 0.00 0.00 2.57
555 812 8.453320 CAACATACTGAGCAAAATGAGTGAATA 58.547 33.333 0.00 0.00 0.00 1.75
556 813 8.743085 ACATACTGAGCAAAATGAGTGAATAT 57.257 30.769 0.00 0.00 0.00 1.28
557 814 9.836864 ACATACTGAGCAAAATGAGTGAATATA 57.163 29.630 0.00 0.00 0.00 0.86
561 818 9.236006 ACTGAGCAAAATGAGTGAATATAAACT 57.764 29.630 0.00 0.00 0.00 2.66
591 848 9.461312 AAATGCATTTATATATCCGTATGTGGT 57.539 29.630 22.95 0.00 0.00 4.16
592 849 9.461312 AATGCATTTATATATCCGTATGTGGTT 57.539 29.630 5.99 0.00 0.00 3.67
593 850 8.487313 TGCATTTATATATCCGTATGTGGTTC 57.513 34.615 0.00 0.00 0.00 3.62
594 851 8.097662 TGCATTTATATATCCGTATGTGGTTCA 58.902 33.333 0.00 0.00 0.00 3.18
595 852 9.109393 GCATTTATATATCCGTATGTGGTTCAT 57.891 33.333 0.00 0.00 40.25 2.57
600 857 3.812156 TCCGTATGTGGTTCATAGTGG 57.188 47.619 0.00 0.00 39.36 4.00
601 858 3.367321 TCCGTATGTGGTTCATAGTGGA 58.633 45.455 0.00 0.00 39.94 4.02
602 859 3.770388 TCCGTATGTGGTTCATAGTGGAA 59.230 43.478 0.00 0.00 39.60 3.53
603 860 4.407621 TCCGTATGTGGTTCATAGTGGAAT 59.592 41.667 0.00 0.00 39.60 3.01
604 861 4.750098 CCGTATGTGGTTCATAGTGGAATC 59.250 45.833 0.00 0.00 39.36 2.52
605 862 5.453339 CCGTATGTGGTTCATAGTGGAATCT 60.453 44.000 0.00 0.00 39.36 2.40
606 863 5.692204 CGTATGTGGTTCATAGTGGAATCTC 59.308 44.000 0.00 0.00 39.36 2.75
607 864 5.965033 ATGTGGTTCATAGTGGAATCTCT 57.035 39.130 0.00 0.00 34.67 3.10
608 865 7.255486 CGTATGTGGTTCATAGTGGAATCTCTA 60.255 40.741 0.00 0.00 39.36 2.43
609 866 6.222038 TGTGGTTCATAGTGGAATCTCTAC 57.778 41.667 0.00 0.00 0.00 2.59
610 867 5.128827 TGTGGTTCATAGTGGAATCTCTACC 59.871 44.000 0.00 0.00 0.00 3.18
611 868 5.128827 GTGGTTCATAGTGGAATCTCTACCA 59.871 44.000 0.00 0.00 0.00 3.25
612 869 5.724370 TGGTTCATAGTGGAATCTCTACCAA 59.276 40.000 0.00 0.00 37.94 3.67
613 870 6.127054 TGGTTCATAGTGGAATCTCTACCAAG 60.127 42.308 0.00 0.00 37.94 3.61
614 871 6.098409 GGTTCATAGTGGAATCTCTACCAAGA 59.902 42.308 0.00 0.00 37.94 3.02
615 872 7.202047 GGTTCATAGTGGAATCTCTACCAAGAT 60.202 40.741 0.00 0.00 37.94 2.40
616 873 7.921041 TCATAGTGGAATCTCTACCAAGATT 57.079 36.000 0.00 0.00 46.23 2.40
617 874 8.324191 TCATAGTGGAATCTCTACCAAGATTT 57.676 34.615 1.05 0.00 44.16 2.17
618 875 9.434275 TCATAGTGGAATCTCTACCAAGATTTA 57.566 33.333 1.05 0.00 44.16 1.40
621 878 8.560124 AGTGGAATCTCTACCAAGATTTATCT 57.440 34.615 1.05 0.00 44.16 1.98
623 880 9.620259 GTGGAATCTCTACCAAGATTTATCTTT 57.380 33.333 2.27 0.00 44.28 2.52
630 887 9.250624 CTCTACCAAGATTTATCTTTAGGAACG 57.749 37.037 13.06 0.00 44.28 3.95
631 888 8.202137 TCTACCAAGATTTATCTTTAGGAACGG 58.798 37.037 13.06 7.95 44.28 4.44
632 889 6.954232 ACCAAGATTTATCTTTAGGAACGGA 58.046 36.000 13.06 0.00 44.28 4.69
633 890 7.048512 ACCAAGATTTATCTTTAGGAACGGAG 58.951 38.462 13.06 0.00 44.28 4.63
634 891 6.483640 CCAAGATTTATCTTTAGGAACGGAGG 59.516 42.308 2.27 0.00 44.28 4.30
635 892 5.612351 AGATTTATCTTTAGGAACGGAGGC 58.388 41.667 0.00 0.00 31.97 4.70
636 893 4.829872 TTTATCTTTAGGAACGGAGGCA 57.170 40.909 0.00 0.00 0.00 4.75
637 894 2.990066 ATCTTTAGGAACGGAGGCAG 57.010 50.000 0.00 0.00 0.00 4.85
648 905 5.711036 AGGAACGGAGGCAGTATACTATTAG 59.289 44.000 4.74 0.00 0.00 1.73
669 926 8.677148 ATTAGTTCAAACATCAGTAGTTGTGT 57.323 30.769 0.00 0.00 0.00 3.72
677 1055 9.125906 CAAACATCAGTAGTTGTGTAGTACTAC 57.874 37.037 23.58 23.58 44.44 2.73
700 1078 1.078072 ACAATGCGGCGTTCCCATA 60.078 52.632 9.37 0.00 0.00 2.74
701 1079 0.465460 ACAATGCGGCGTTCCCATAT 60.465 50.000 9.37 0.00 0.00 1.78
730 1108 4.202101 CCTCTGCTCACCAGTACTATCAAG 60.202 50.000 0.00 0.00 42.38 3.02
743 1121 3.041211 ACTATCAAGGATGCTGCCACTA 58.959 45.455 0.00 0.00 0.00 2.74
744 1122 2.338577 ATCAAGGATGCTGCCACTAC 57.661 50.000 0.00 0.00 0.00 2.73
745 1123 1.279496 TCAAGGATGCTGCCACTACT 58.721 50.000 0.00 0.00 0.00 2.57
746 1124 2.466846 TCAAGGATGCTGCCACTACTA 58.533 47.619 0.00 0.00 0.00 1.82
747 1125 2.837591 TCAAGGATGCTGCCACTACTAA 59.162 45.455 0.00 0.00 0.00 2.24
748 1126 3.263170 TCAAGGATGCTGCCACTACTAAA 59.737 43.478 0.00 0.00 0.00 1.85
817 1195 2.135933 GGTCAACTCAACTCAGTTCGG 58.864 52.381 0.00 0.00 34.17 4.30
828 1206 3.541632 ACTCAGTTCGGCAAGAGAAAAA 58.458 40.909 0.00 0.00 32.59 1.94
887 1265 3.314080 GGAAATGTGTTTTGACTCGTCCA 59.686 43.478 0.00 0.00 0.00 4.02
889 1267 5.507315 GGAAATGTGTTTTGACTCGTCCAAT 60.507 40.000 0.00 0.00 0.00 3.16
891 1269 2.875933 TGTGTTTTGACTCGTCCAATCC 59.124 45.455 0.00 0.00 0.00 3.01
892 1270 2.096417 GTGTTTTGACTCGTCCAATCCG 60.096 50.000 0.00 0.00 0.00 4.18
894 1272 0.320374 TTTGACTCGTCCAATCCGCT 59.680 50.000 0.00 0.00 0.00 5.52
895 1273 0.320374 TTGACTCGTCCAATCCGCTT 59.680 50.000 0.00 0.00 0.00 4.68
896 1274 0.389817 TGACTCGTCCAATCCGCTTG 60.390 55.000 0.00 0.00 34.42 4.01
897 1275 0.389948 GACTCGTCCAATCCGCTTGT 60.390 55.000 0.00 0.00 32.61 3.16
898 1276 0.389948 ACTCGTCCAATCCGCTTGTC 60.390 55.000 0.00 0.00 32.61 3.18
899 1277 1.079405 TCGTCCAATCCGCTTGTCC 60.079 57.895 0.00 0.00 32.61 4.02
900 1278 1.079127 CGTCCAATCCGCTTGTCCT 60.079 57.895 0.00 0.00 32.61 3.85
901 1279 0.174845 CGTCCAATCCGCTTGTCCTA 59.825 55.000 0.00 0.00 32.61 2.94
902 1280 1.802880 CGTCCAATCCGCTTGTCCTAG 60.803 57.143 0.00 0.00 32.61 3.02
903 1281 0.178068 TCCAATCCGCTTGTCCTAGC 59.822 55.000 0.00 0.00 37.80 3.42
904 1282 0.179000 CCAATCCGCTTGTCCTAGCT 59.821 55.000 0.00 0.00 39.03 3.32
946 1325 0.162082 CACAAAATGCATGCACGCAC 59.838 50.000 25.37 0.00 46.56 5.34
1014 1393 2.092212 CAGCCTCACCACCCAATAATCT 60.092 50.000 0.00 0.00 0.00 2.40
1021 1400 3.941483 CACCACCCAATAATCTCACACTC 59.059 47.826 0.00 0.00 0.00 3.51
1022 1401 3.587061 ACCACCCAATAATCTCACACTCA 59.413 43.478 0.00 0.00 0.00 3.41
1023 1402 4.042809 ACCACCCAATAATCTCACACTCAA 59.957 41.667 0.00 0.00 0.00 3.02
1024 1403 4.637534 CCACCCAATAATCTCACACTCAAG 59.362 45.833 0.00 0.00 0.00 3.02
1025 1404 5.491070 CACCCAATAATCTCACACTCAAGA 58.509 41.667 0.00 0.00 0.00 3.02
1026 1405 6.118170 CACCCAATAATCTCACACTCAAGAT 58.882 40.000 0.00 0.00 33.67 2.40
1033 1412 4.527509 TCTCACACTCAAGATCCTTGTC 57.472 45.455 6.59 0.00 0.00 3.18
1068 1479 0.952010 GAACACCCATACCGCACGTT 60.952 55.000 0.00 0.00 0.00 3.99
1070 1481 2.125832 ACCCATACCGCACGTTCG 60.126 61.111 0.00 0.00 0.00 3.95
1100 1515 5.515626 CCTAGTACGTGTGACTAAGCAATTC 59.484 44.000 0.00 0.00 0.00 2.17
1111 1538 7.174772 TGTGACTAAGCAATTCAGCTCATTTTA 59.825 33.333 0.00 0.00 45.89 1.52
1160 1598 2.027625 CTCGTCCAAGGCCGTCAAC 61.028 63.158 0.00 0.00 0.00 3.18
1262 1703 2.286025 CGACACGTACATCTCGGTGATA 59.714 50.000 3.73 0.00 33.36 2.15
1811 2276 1.803366 AAGACGACGAGGTGGTGGTC 61.803 60.000 0.00 0.00 43.42 4.02
2138 2609 2.189521 GTGGCCCGGATCAACGAT 59.810 61.111 0.73 0.00 35.47 3.73
2291 2770 2.118313 TCTACGACATGGACTTCGGA 57.882 50.000 8.14 0.00 39.63 4.55
2441 2920 2.908688 TCAAGAACTGCTGCTACACA 57.091 45.000 0.00 0.00 0.00 3.72
2501 2981 1.001181 GCCAATGTGTGCCTGATGTTT 59.999 47.619 0.00 0.00 0.00 2.83
2504 2984 3.571571 CAATGTGTGCCTGATGTTTGAG 58.428 45.455 0.00 0.00 0.00 3.02
2505 2985 2.636647 TGTGTGCCTGATGTTTGAGA 57.363 45.000 0.00 0.00 0.00 3.27
2507 2987 2.618241 TGTGTGCCTGATGTTTGAGAAC 59.382 45.455 0.00 0.00 36.29 3.01
2518 2998 2.031560 TGTTTGAGAACATCACGCACAC 59.968 45.455 0.00 0.00 40.71 3.82
2519 2999 1.946745 TTGAGAACATCACGCACACA 58.053 45.000 0.00 0.00 37.77 3.72
2521 3001 2.493035 TGAGAACATCACGCACACATT 58.507 42.857 0.00 0.00 31.12 2.71
2522 3002 2.223845 TGAGAACATCACGCACACATTG 59.776 45.455 0.00 0.00 31.12 2.82
2523 3003 1.536766 AGAACATCACGCACACATTGG 59.463 47.619 0.00 0.00 0.00 3.16
2525 3005 1.171549 ACATCACGCACACATTGGCA 61.172 50.000 0.00 0.00 0.00 4.92
2526 3006 0.730155 CATCACGCACACATTGGCAC 60.730 55.000 0.00 0.00 0.00 5.01
2527 3007 1.171549 ATCACGCACACATTGGCACA 61.172 50.000 0.00 0.00 0.00 4.57
2528 3008 1.171549 TCACGCACACATTGGCACAT 61.172 50.000 0.00 0.00 39.30 3.21
2530 3010 2.089936 CGCACACATTGGCACATGC 61.090 57.895 8.82 0.00 39.30 4.06
2531 3011 1.005984 GCACACATTGGCACATGCA 60.006 52.632 6.15 0.00 44.36 3.96
2532 3012 0.390603 GCACACATTGGCACATGCAT 60.391 50.000 6.15 0.00 44.36 3.96
2609 3365 8.751302 TTTGGAAGAGTAAACAAACAAAGTTC 57.249 30.769 0.00 0.00 0.00 3.01
2698 3456 4.967084 TCATATATACGGTGGCCAAGTT 57.033 40.909 18.69 10.25 0.00 2.66
2702 3460 0.251165 ATACGGTGGCCAAGTTGCTT 60.251 50.000 18.69 1.94 0.00 3.91
2703 3461 1.169661 TACGGTGGCCAAGTTGCTTG 61.170 55.000 18.69 2.16 40.75 4.01
2704 3462 2.192861 CGGTGGCCAAGTTGCTTGA 61.193 57.895 7.24 0.00 43.42 3.02
2705 3463 1.733402 CGGTGGCCAAGTTGCTTGAA 61.733 55.000 7.24 0.00 43.42 2.69
2706 3464 0.681175 GGTGGCCAAGTTGCTTGAAT 59.319 50.000 7.24 0.00 43.42 2.57
2707 3465 1.070601 GGTGGCCAAGTTGCTTGAATT 59.929 47.619 7.24 0.00 43.42 2.17
2708 3466 2.485302 GGTGGCCAAGTTGCTTGAATTT 60.485 45.455 7.24 0.00 43.42 1.82
2709 3467 3.205338 GTGGCCAAGTTGCTTGAATTTT 58.795 40.909 7.24 0.00 43.42 1.82
2710 3468 3.627123 GTGGCCAAGTTGCTTGAATTTTT 59.373 39.130 7.24 0.00 43.42 1.94
2748 3506 9.421806 CTTCTGATATATTCATCTTCTCCACAC 57.578 37.037 0.00 0.00 32.72 3.82
2751 3509 7.901029 TGATATATTCATCTTCTCCACACTCC 58.099 38.462 0.00 0.00 0.00 3.85
2774 3532 3.803082 CTTGCACCACATCCGCCG 61.803 66.667 0.00 0.00 0.00 6.46
2780 3538 2.509336 CCACATCCGCCGTGACTC 60.509 66.667 0.00 0.00 36.43 3.36
2851 3609 4.452733 GCTGCCCTTACGGTCGCT 62.453 66.667 0.00 0.00 0.00 4.93
2870 3628 4.057428 GGCAGAGCCGTCGTGACT 62.057 66.667 0.00 0.00 39.62 3.41
2873 3655 3.432588 AGAGCCGTCGTGACTCCG 61.433 66.667 0.00 0.00 0.00 4.63
2892 3674 3.522731 CTCGCCCGAGGTCTCTGG 61.523 72.222 9.71 4.36 38.51 3.86
2904 3686 2.279120 CTCTGGCGACGAGGATGC 60.279 66.667 0.00 0.00 0.00 3.91
3045 3842 1.153066 TTTGTGTTCCTGCAGGCGA 60.153 52.632 28.91 16.06 34.44 5.54
3093 3890 1.315981 CCTCGAGCAGTACCAGCTGA 61.316 60.000 17.39 10.91 43.58 4.26
3201 4000 4.685026 CGATCTACGAGGCCGCCG 62.685 72.222 17.07 17.07 45.77 6.46
3312 4111 1.495951 GCGCCATCGACGAACTTTT 59.504 52.632 0.00 0.00 38.10 2.27
3315 4114 1.153353 GCCATCGACGAACTTTTGGA 58.847 50.000 16.65 0.00 0.00 3.53
3316 4115 1.533731 GCCATCGACGAACTTTTGGAA 59.466 47.619 16.65 0.00 0.00 3.53
3359 4161 2.539476 GTTGGCGCCTTTATTTCCATG 58.461 47.619 29.70 0.00 0.00 3.66
3435 4237 3.161450 GCATGGGAGGCGGTAGGA 61.161 66.667 0.00 0.00 0.00 2.94
3437 4239 2.063979 CATGGGAGGCGGTAGGACA 61.064 63.158 0.00 0.00 0.00 4.02
3453 4255 2.198827 GACATTGTGTCCCATGTGGA 57.801 50.000 0.00 0.00 41.37 4.02
3476 4278 2.695666 CAGTCCGTCTCCCATGTTCTAT 59.304 50.000 0.00 0.00 0.00 1.98
3477 4279 2.959707 AGTCCGTCTCCCATGTTCTATC 59.040 50.000 0.00 0.00 0.00 2.08
3478 4280 2.693591 GTCCGTCTCCCATGTTCTATCA 59.306 50.000 0.00 0.00 0.00 2.15
3479 4281 2.693591 TCCGTCTCCCATGTTCTATCAC 59.306 50.000 0.00 0.00 0.00 3.06
3480 4282 2.430694 CCGTCTCCCATGTTCTATCACA 59.569 50.000 0.00 0.00 0.00 3.58
3481 4283 3.448686 CGTCTCCCATGTTCTATCACAC 58.551 50.000 0.00 0.00 0.00 3.82
3482 4284 3.738281 CGTCTCCCATGTTCTATCACACC 60.738 52.174 0.00 0.00 0.00 4.16
3483 4285 3.452627 GTCTCCCATGTTCTATCACACCT 59.547 47.826 0.00 0.00 0.00 4.00
3484 4286 4.080863 GTCTCCCATGTTCTATCACACCTT 60.081 45.833 0.00 0.00 0.00 3.50
3485 4287 4.162320 TCTCCCATGTTCTATCACACCTTC 59.838 45.833 0.00 0.00 0.00 3.46
3486 4288 3.843619 TCCCATGTTCTATCACACCTTCA 59.156 43.478 0.00 0.00 0.00 3.02
3487 4289 3.941483 CCCATGTTCTATCACACCTTCAC 59.059 47.826 0.00 0.00 0.00 3.18
3488 4290 4.323792 CCCATGTTCTATCACACCTTCACT 60.324 45.833 0.00 0.00 0.00 3.41
3489 4291 5.248640 CCATGTTCTATCACACCTTCACTT 58.751 41.667 0.00 0.00 0.00 3.16
3490 4292 5.122869 CCATGTTCTATCACACCTTCACTTG 59.877 44.000 0.00 0.00 0.00 3.16
3491 4293 5.545063 TGTTCTATCACACCTTCACTTGA 57.455 39.130 0.00 0.00 0.00 3.02
3492 4294 6.114187 TGTTCTATCACACCTTCACTTGAT 57.886 37.500 0.00 0.00 33.31 2.57
3493 4295 6.166279 TGTTCTATCACACCTTCACTTGATC 58.834 40.000 0.00 0.00 31.20 2.92
3494 4296 4.998788 TCTATCACACCTTCACTTGATCG 58.001 43.478 0.00 0.00 31.20 3.69
3495 4297 2.455674 TCACACCTTCACTTGATCGG 57.544 50.000 0.00 0.00 0.00 4.18
3496 4298 1.691976 TCACACCTTCACTTGATCGGT 59.308 47.619 0.00 0.00 0.00 4.69
3497 4299 2.069273 CACACCTTCACTTGATCGGTC 58.931 52.381 0.00 0.00 0.00 4.79
3498 4300 1.971357 ACACCTTCACTTGATCGGTCT 59.029 47.619 0.00 0.00 0.00 3.85
3499 4301 2.368875 ACACCTTCACTTGATCGGTCTT 59.631 45.455 0.00 0.00 0.00 3.01
3500 4302 3.576982 ACACCTTCACTTGATCGGTCTTA 59.423 43.478 0.00 0.00 0.00 2.10
3501 4303 4.223032 ACACCTTCACTTGATCGGTCTTAT 59.777 41.667 0.00 0.00 0.00 1.73
3502 4304 4.806247 CACCTTCACTTGATCGGTCTTATC 59.194 45.833 0.00 0.00 0.00 1.75
3503 4305 4.045104 CCTTCACTTGATCGGTCTTATCG 58.955 47.826 0.00 0.00 0.00 2.92
3504 4306 3.079960 TCACTTGATCGGTCTTATCGC 57.920 47.619 0.00 0.00 0.00 4.58
3505 4307 2.688446 TCACTTGATCGGTCTTATCGCT 59.312 45.455 0.00 0.00 0.00 4.93
3506 4308 2.791560 CACTTGATCGGTCTTATCGCTG 59.208 50.000 0.00 0.00 0.00 5.18
3507 4309 2.223829 ACTTGATCGGTCTTATCGCTGG 60.224 50.000 0.00 0.00 0.00 4.85
3508 4310 1.399714 TGATCGGTCTTATCGCTGGT 58.600 50.000 0.00 0.00 0.00 4.00
3509 4311 1.067060 TGATCGGTCTTATCGCTGGTG 59.933 52.381 0.00 0.00 0.00 4.17
3510 4312 0.249489 ATCGGTCTTATCGCTGGTGC 60.249 55.000 0.00 0.00 0.00 5.01
3511 4313 1.141881 CGGTCTTATCGCTGGTGCT 59.858 57.895 0.00 0.00 36.97 4.40
3512 4314 0.460284 CGGTCTTATCGCTGGTGCTT 60.460 55.000 0.00 0.00 36.97 3.91
3513 4315 1.202371 CGGTCTTATCGCTGGTGCTTA 60.202 52.381 0.00 0.00 36.97 3.09
3514 4316 2.545952 CGGTCTTATCGCTGGTGCTTAT 60.546 50.000 0.00 0.00 36.97 1.73
3515 4317 2.802816 GGTCTTATCGCTGGTGCTTATG 59.197 50.000 0.00 0.00 36.97 1.90
3516 4318 3.492656 GGTCTTATCGCTGGTGCTTATGA 60.493 47.826 0.00 0.00 36.97 2.15
3517 4319 4.119862 GTCTTATCGCTGGTGCTTATGAA 58.880 43.478 0.00 0.00 36.97 2.57
3518 4320 4.210120 GTCTTATCGCTGGTGCTTATGAAG 59.790 45.833 0.00 0.00 36.97 3.02
3519 4321 2.988010 ATCGCTGGTGCTTATGAAGA 57.012 45.000 0.00 0.00 36.97 2.87
3520 4322 2.010145 TCGCTGGTGCTTATGAAGAC 57.990 50.000 0.00 0.00 36.97 3.01
3521 4323 0.647410 CGCTGGTGCTTATGAAGACG 59.353 55.000 0.00 0.00 36.97 4.18
3522 4324 1.009829 GCTGGTGCTTATGAAGACGG 58.990 55.000 0.00 0.00 36.03 4.79
3523 4325 1.009829 CTGGTGCTTATGAAGACGGC 58.990 55.000 0.00 0.00 0.00 5.68
3524 4326 0.739462 TGGTGCTTATGAAGACGGCG 60.739 55.000 4.80 4.80 0.00 6.46
3525 4327 1.429148 GGTGCTTATGAAGACGGCGG 61.429 60.000 13.24 0.00 0.00 6.13
3526 4328 0.459585 GTGCTTATGAAGACGGCGGA 60.460 55.000 13.24 0.00 0.00 5.54
3527 4329 0.464036 TGCTTATGAAGACGGCGGAT 59.536 50.000 13.24 0.00 0.00 4.18
3528 4330 0.861837 GCTTATGAAGACGGCGGATG 59.138 55.000 13.24 0.00 0.00 3.51
3529 4331 1.538204 GCTTATGAAGACGGCGGATGA 60.538 52.381 13.24 0.00 0.00 2.92
3530 4332 2.821546 CTTATGAAGACGGCGGATGAA 58.178 47.619 13.24 0.00 0.00 2.57
3531 4333 2.509052 TATGAAGACGGCGGATGAAG 57.491 50.000 13.24 0.00 0.00 3.02
3532 4334 0.179073 ATGAAGACGGCGGATGAAGG 60.179 55.000 13.24 0.00 0.00 3.46
3533 4335 1.254975 TGAAGACGGCGGATGAAGGA 61.255 55.000 13.24 0.00 0.00 3.36
3534 4336 0.806492 GAAGACGGCGGATGAAGGAC 60.806 60.000 13.24 0.00 0.00 3.85
3535 4337 2.558554 AAGACGGCGGATGAAGGACG 62.559 60.000 13.24 0.00 0.00 4.79
3539 4341 4.814294 GCGGATGAAGGACGCGGT 62.814 66.667 12.47 0.00 43.98 5.68
3540 4342 2.582498 CGGATGAAGGACGCGGTC 60.582 66.667 12.47 5.53 0.00 4.79
3548 4350 3.116531 GGACGCGGTCCCGAAAAG 61.117 66.667 12.47 0.00 46.19 2.27
3549 4351 3.116531 GACGCGGTCCCGAAAAGG 61.117 66.667 12.47 0.00 42.83 3.11
3560 4362 2.793278 CCGAAAAGGGAACAACAAGG 57.207 50.000 0.00 0.00 35.97 3.61
3561 4363 1.339929 CCGAAAAGGGAACAACAAGGG 59.660 52.381 0.00 0.00 35.97 3.95
3562 4364 1.269569 CGAAAAGGGAACAACAAGGGC 60.270 52.381 0.00 0.00 0.00 5.19
3563 4365 2.039418 GAAAAGGGAACAACAAGGGCT 58.961 47.619 0.00 0.00 0.00 5.19
3564 4366 2.174685 AAAGGGAACAACAAGGGCTT 57.825 45.000 0.00 0.00 0.00 4.35
3565 4367 1.413118 AAGGGAACAACAAGGGCTTG 58.587 50.000 0.00 0.00 45.58 4.01
3566 4368 0.469892 AGGGAACAACAAGGGCTTGG 60.470 55.000 0.00 0.00 44.45 3.61
3567 4369 0.469144 GGGAACAACAAGGGCTTGGA 60.469 55.000 0.00 0.00 44.45 3.53
3568 4370 0.673985 GGAACAACAAGGGCTTGGAC 59.326 55.000 0.00 0.00 44.45 4.02
3569 4371 0.310854 GAACAACAAGGGCTTGGACG 59.689 55.000 0.00 0.00 44.45 4.79
3570 4372 0.395173 AACAACAAGGGCTTGGACGT 60.395 50.000 0.00 0.00 44.45 4.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.020984 ACTGAGCTAAGTCTAGACTGGC 58.979 50.000 28.90 28.90 41.58 4.85
1 2 5.298276 CCTAACTGAGCTAAGTCTAGACTGG 59.702 48.000 25.83 20.65 41.58 4.00
2 3 5.883673 ACCTAACTGAGCTAAGTCTAGACTG 59.116 44.000 25.83 15.20 41.58 3.51
3 4 6.069705 ACCTAACTGAGCTAAGTCTAGACT 57.930 41.667 20.00 20.00 44.94 3.24
4 5 6.404954 CCAACCTAACTGAGCTAAGTCTAGAC 60.405 46.154 15.41 15.41 0.00 2.59
5 6 5.652891 CCAACCTAACTGAGCTAAGTCTAGA 59.347 44.000 3.53 0.00 0.00 2.43
6 7 5.419471 ACCAACCTAACTGAGCTAAGTCTAG 59.581 44.000 3.53 8.50 0.00 2.43
7 8 5.331069 ACCAACCTAACTGAGCTAAGTCTA 58.669 41.667 3.53 0.00 0.00 2.59
8 9 4.161102 ACCAACCTAACTGAGCTAAGTCT 58.839 43.478 3.53 0.00 0.00 3.24
9 10 4.496360 GACCAACCTAACTGAGCTAAGTC 58.504 47.826 3.53 0.00 0.00 3.01
10 11 3.056749 CGACCAACCTAACTGAGCTAAGT 60.057 47.826 0.00 0.00 0.00 2.24
11 12 3.056749 ACGACCAACCTAACTGAGCTAAG 60.057 47.826 0.00 0.00 0.00 2.18
12 13 2.895404 ACGACCAACCTAACTGAGCTAA 59.105 45.455 0.00 0.00 0.00 3.09
13 14 2.522185 ACGACCAACCTAACTGAGCTA 58.478 47.619 0.00 0.00 0.00 3.32
14 15 1.339097 ACGACCAACCTAACTGAGCT 58.661 50.000 0.00 0.00 0.00 4.09
15 16 3.308438 TTACGACCAACCTAACTGAGC 57.692 47.619 0.00 0.00 0.00 4.26
16 17 4.181578 CCATTACGACCAACCTAACTGAG 58.818 47.826 0.00 0.00 0.00 3.35
17 18 3.579586 ACCATTACGACCAACCTAACTGA 59.420 43.478 0.00 0.00 0.00 3.41
18 19 3.934068 ACCATTACGACCAACCTAACTG 58.066 45.455 0.00 0.00 0.00 3.16
19 20 4.774200 ACTACCATTACGACCAACCTAACT 59.226 41.667 0.00 0.00 0.00 2.24
20 21 5.077134 ACTACCATTACGACCAACCTAAC 57.923 43.478 0.00 0.00 0.00 2.34
21 22 6.606796 TGATACTACCATTACGACCAACCTAA 59.393 38.462 0.00 0.00 0.00 2.69
22 23 6.128486 TGATACTACCATTACGACCAACCTA 58.872 40.000 0.00 0.00 0.00 3.08
23 24 4.957954 TGATACTACCATTACGACCAACCT 59.042 41.667 0.00 0.00 0.00 3.50
24 25 5.266733 TGATACTACCATTACGACCAACC 57.733 43.478 0.00 0.00 0.00 3.77
25 26 7.428020 TGTATGATACTACCATTACGACCAAC 58.572 38.462 4.03 0.00 0.00 3.77
26 27 7.585579 TGTATGATACTACCATTACGACCAA 57.414 36.000 4.03 0.00 0.00 3.67
27 28 7.770366 ATGTATGATACTACCATTACGACCA 57.230 36.000 4.03 0.00 0.00 4.02
28 29 8.186821 GGTATGTATGATACTACCATTACGACC 58.813 40.741 18.25 2.52 34.95 4.79
29 30 8.733458 TGGTATGTATGATACTACCATTACGAC 58.267 37.037 20.29 0.00 37.44 4.34
30 31 8.866970 TGGTATGTATGATACTACCATTACGA 57.133 34.615 20.29 6.37 37.44 3.43
31 32 9.350357 GTTGGTATGTATGATACTACCATTACG 57.650 37.037 22.67 0.00 39.67 3.18
51 52 9.689976 CACATCATCAAAATTGTTTAGTTGGTA 57.310 29.630 0.00 0.00 0.00 3.25
52 53 8.203485 ACACATCATCAAAATTGTTTAGTTGGT 58.797 29.630 0.00 0.00 0.00 3.67
53 54 8.592105 ACACATCATCAAAATTGTTTAGTTGG 57.408 30.769 0.00 0.00 0.00 3.77
54 55 9.247126 TGACACATCATCAAAATTGTTTAGTTG 57.753 29.630 0.00 0.00 0.00 3.16
55 56 9.985730 ATGACACATCATCAAAATTGTTTAGTT 57.014 25.926 0.00 0.00 42.15 2.24
136 137 9.764363 GCATGCCATATAGTAGTATAGCATTTA 57.236 33.333 16.24 0.00 33.69 1.40
137 138 8.267183 TGCATGCCATATAGTAGTATAGCATTT 58.733 33.333 16.68 2.27 33.69 2.32
138 139 7.795047 TGCATGCCATATAGTAGTATAGCATT 58.205 34.615 16.68 5.46 33.69 3.56
139 140 7.365497 TGCATGCCATATAGTAGTATAGCAT 57.635 36.000 16.68 14.31 35.15 3.79
140 141 6.790232 TGCATGCCATATAGTAGTATAGCA 57.210 37.500 16.68 11.76 30.79 3.49
141 142 9.764363 TTTATGCATGCCATATAGTAGTATAGC 57.236 33.333 16.68 3.38 36.35 2.97
193 194 8.535335 CCTCTCTAATGCATAGTACCATATGTT 58.465 37.037 0.00 0.00 35.87 2.71
194 195 7.676043 ACCTCTCTAATGCATAGTACCATATGT 59.324 37.037 0.00 0.00 35.87 2.29
195 196 8.072321 ACCTCTCTAATGCATAGTACCATATG 57.928 38.462 0.00 0.00 36.43 1.78
196 197 9.415008 CTACCTCTCTAATGCATAGTACCATAT 57.585 37.037 0.00 0.00 33.08 1.78
197 198 8.391699 ACTACCTCTCTAATGCATAGTACCATA 58.608 37.037 0.00 0.00 33.08 2.74
198 199 7.242359 ACTACCTCTCTAATGCATAGTACCAT 58.758 38.462 0.00 0.00 33.08 3.55
199 200 6.611785 ACTACCTCTCTAATGCATAGTACCA 58.388 40.000 0.00 0.00 33.08 3.25
200 201 8.810990 ATACTACCTCTCTAATGCATAGTACC 57.189 38.462 0.00 0.00 33.08 3.34
207 208 9.809395 AGTGTATAATACTACCTCTCTAATGCA 57.191 33.333 0.00 0.00 0.00 3.96
256 257 8.961634 GCTGATTGTAGTGAGGAGTATCATATA 58.038 37.037 0.00 0.00 36.25 0.86
257 258 7.093552 GGCTGATTGTAGTGAGGAGTATCATAT 60.094 40.741 0.00 0.00 36.25 1.78
258 259 6.209589 GGCTGATTGTAGTGAGGAGTATCATA 59.790 42.308 0.00 0.00 36.25 2.15
259 260 5.011533 GGCTGATTGTAGTGAGGAGTATCAT 59.988 44.000 0.00 0.00 36.25 2.45
260 261 4.342378 GGCTGATTGTAGTGAGGAGTATCA 59.658 45.833 0.00 0.00 36.25 2.15
261 262 4.586841 AGGCTGATTGTAGTGAGGAGTATC 59.413 45.833 0.00 0.00 0.00 2.24
262 263 4.551671 AGGCTGATTGTAGTGAGGAGTAT 58.448 43.478 0.00 0.00 0.00 2.12
263 264 3.982516 AGGCTGATTGTAGTGAGGAGTA 58.017 45.455 0.00 0.00 0.00 2.59
264 265 2.826488 AGGCTGATTGTAGTGAGGAGT 58.174 47.619 0.00 0.00 0.00 3.85
265 266 3.902881 AAGGCTGATTGTAGTGAGGAG 57.097 47.619 0.00 0.00 0.00 3.69
266 267 4.162320 CCTTAAGGCTGATTGTAGTGAGGA 59.838 45.833 9.00 0.00 0.00 3.71
267 268 4.446371 CCTTAAGGCTGATTGTAGTGAGG 58.554 47.826 9.00 0.00 0.00 3.86
268 269 4.162320 TCCCTTAAGGCTGATTGTAGTGAG 59.838 45.833 16.70 0.00 34.51 3.51
269 270 4.101114 TCCCTTAAGGCTGATTGTAGTGA 58.899 43.478 16.70 0.33 34.51 3.41
270 271 4.487714 TCCCTTAAGGCTGATTGTAGTG 57.512 45.455 16.70 0.00 34.51 2.74
271 272 6.330250 ACATATCCCTTAAGGCTGATTGTAGT 59.670 38.462 16.70 8.13 34.51 2.73
272 273 6.773638 ACATATCCCTTAAGGCTGATTGTAG 58.226 40.000 16.70 7.61 34.51 2.74
273 274 6.763715 ACATATCCCTTAAGGCTGATTGTA 57.236 37.500 16.70 0.64 34.51 2.41
274 275 5.653255 ACATATCCCTTAAGGCTGATTGT 57.347 39.130 16.70 15.58 34.51 2.71
275 276 9.739276 TTAATACATATCCCTTAAGGCTGATTG 57.261 33.333 16.70 15.07 34.51 2.67
278 279 9.959721 GAATTAATACATATCCCTTAAGGCTGA 57.040 33.333 16.70 9.41 34.51 4.26
279 280 9.739276 TGAATTAATACATATCCCTTAAGGCTG 57.261 33.333 16.70 12.01 34.51 4.85
313 314 1.136500 GGTCGATTGGACTAGGACCAC 59.864 57.143 9.87 1.03 45.07 4.16
318 319 2.803203 TCCGGTCGATTGGACTAGG 58.197 57.895 0.00 3.74 45.35 3.02
323 324 0.382873 CATACGTCCGGTCGATTGGA 59.617 55.000 27.44 4.61 34.70 3.53
330 331 4.217118 ACATACTAATCCATACGTCCGGTC 59.783 45.833 0.00 0.00 0.00 4.79
339 340 9.736414 GACTGGTCTACTACATACTAATCCATA 57.264 37.037 0.00 0.00 0.00 2.74
343 344 8.444715 CGATGACTGGTCTACTACATACTAATC 58.555 40.741 2.38 0.00 0.00 1.75
349 350 5.699915 GCTACGATGACTGGTCTACTACATA 59.300 44.000 0.00 0.00 0.00 2.29
355 356 2.299521 AGGCTACGATGACTGGTCTAC 58.700 52.381 0.00 0.00 0.00 2.59
373 374 2.749621 ACAAGAGCTGGCGAAAAATAGG 59.250 45.455 0.00 0.00 0.00 2.57
409 666 9.224267 AGTGATGCATGTAGCCTAATTATTAAG 57.776 33.333 2.46 0.00 44.83 1.85
420 677 2.609427 TCAGAGTGATGCATGTAGCC 57.391 50.000 2.46 0.00 44.83 3.93
438 695 1.704007 AAGCCCCTAGCCTCTGCATC 61.704 60.000 0.00 0.00 45.47 3.91
449 706 2.354328 TGAAAAGGAGGAAAGCCCCTA 58.646 47.619 0.00 0.00 36.49 3.53
450 707 1.158007 TGAAAAGGAGGAAAGCCCCT 58.842 50.000 0.00 0.00 39.77 4.79
515 772 9.967346 GCTCAGTATGTTGTCTATAGTGAAATA 57.033 33.333 0.00 0.00 38.99 1.40
516 773 8.478066 TGCTCAGTATGTTGTCTATAGTGAAAT 58.522 33.333 0.00 0.00 38.99 2.17
517 774 7.836842 TGCTCAGTATGTTGTCTATAGTGAAA 58.163 34.615 0.00 0.00 38.99 2.69
518 775 7.404671 TGCTCAGTATGTTGTCTATAGTGAA 57.595 36.000 0.00 0.00 38.99 3.18
519 776 7.404671 TTGCTCAGTATGTTGTCTATAGTGA 57.595 36.000 0.00 0.00 37.85 3.41
520 777 8.479313 TTTTGCTCAGTATGTTGTCTATAGTG 57.521 34.615 0.00 0.00 37.40 2.74
521 778 9.102757 CATTTTGCTCAGTATGTTGTCTATAGT 57.897 33.333 0.00 0.00 37.40 2.12
522 779 9.317936 TCATTTTGCTCAGTATGTTGTCTATAG 57.682 33.333 0.00 0.00 37.40 1.31
523 780 9.317936 CTCATTTTGCTCAGTATGTTGTCTATA 57.682 33.333 0.00 0.00 37.40 1.31
524 781 7.826252 ACTCATTTTGCTCAGTATGTTGTCTAT 59.174 33.333 0.00 0.00 37.40 1.98
525 782 7.118245 CACTCATTTTGCTCAGTATGTTGTCTA 59.882 37.037 0.00 0.00 37.40 2.59
526 783 6.000219 ACTCATTTTGCTCAGTATGTTGTCT 59.000 36.000 0.00 0.00 37.40 3.41
527 784 6.073058 TCACTCATTTTGCTCAGTATGTTGTC 60.073 38.462 0.00 0.00 37.40 3.18
528 785 5.764686 TCACTCATTTTGCTCAGTATGTTGT 59.235 36.000 0.00 0.00 37.40 3.32
529 786 6.245115 TCACTCATTTTGCTCAGTATGTTG 57.755 37.500 0.00 0.00 37.40 3.33
530 787 6.882610 TTCACTCATTTTGCTCAGTATGTT 57.117 33.333 0.00 0.00 37.40 2.71
531 788 8.743085 ATATTCACTCATTTTGCTCAGTATGT 57.257 30.769 0.00 0.00 37.40 2.29
535 792 9.236006 AGTTTATATTCACTCATTTTGCTCAGT 57.764 29.630 0.00 0.00 0.00 3.41
565 822 9.461312 ACCACATACGGATATATAAATGCATTT 57.539 29.630 26.72 26.72 0.00 2.32
566 823 9.461312 AACCACATACGGATATATAAATGCATT 57.539 29.630 5.99 5.99 0.00 3.56
567 824 9.109393 GAACCACATACGGATATATAAATGCAT 57.891 33.333 0.00 0.00 0.00 3.96
568 825 8.097662 TGAACCACATACGGATATATAAATGCA 58.902 33.333 0.00 0.00 0.00 3.96
569 826 8.487313 TGAACCACATACGGATATATAAATGC 57.513 34.615 0.00 0.00 0.00 3.56
574 831 8.909923 CCACTATGAACCACATACGGATATATA 58.090 37.037 0.00 0.00 40.07 0.86
575 832 7.618117 TCCACTATGAACCACATACGGATATAT 59.382 37.037 0.00 0.00 40.07 0.86
576 833 6.949463 TCCACTATGAACCACATACGGATATA 59.051 38.462 0.00 0.00 40.07 0.86
577 834 5.778241 TCCACTATGAACCACATACGGATAT 59.222 40.000 0.00 0.00 40.07 1.63
578 835 5.141910 TCCACTATGAACCACATACGGATA 58.858 41.667 0.00 0.00 40.07 2.59
579 836 3.964688 TCCACTATGAACCACATACGGAT 59.035 43.478 0.00 0.00 40.07 4.18
580 837 3.367321 TCCACTATGAACCACATACGGA 58.633 45.455 0.00 0.00 40.07 4.69
581 838 3.812156 TCCACTATGAACCACATACGG 57.188 47.619 0.00 0.00 40.07 4.02
582 839 5.601662 AGATTCCACTATGAACCACATACG 58.398 41.667 0.00 0.00 40.07 3.06
583 840 6.821388 AGAGATTCCACTATGAACCACATAC 58.179 40.000 0.00 0.00 40.07 2.39
584 841 7.015292 GGTAGAGATTCCACTATGAACCACATA 59.985 40.741 0.00 0.00 40.07 2.29
585 842 5.965033 AGAGATTCCACTATGAACCACAT 57.035 39.130 0.00 0.00 42.39 3.21
586 843 5.128827 GGTAGAGATTCCACTATGAACCACA 59.871 44.000 0.00 0.00 0.00 4.17
587 844 5.128827 TGGTAGAGATTCCACTATGAACCAC 59.871 44.000 0.00 0.00 0.00 4.16
588 845 5.277250 TGGTAGAGATTCCACTATGAACCA 58.723 41.667 0.00 0.00 0.00 3.67
589 846 5.871396 TGGTAGAGATTCCACTATGAACC 57.129 43.478 0.00 0.00 0.00 3.62
590 847 7.113658 TCTTGGTAGAGATTCCACTATGAAC 57.886 40.000 0.00 0.00 33.12 3.18
591 848 7.921041 ATCTTGGTAGAGATTCCACTATGAA 57.079 36.000 0.00 0.00 32.54 2.57
592 849 7.921041 AATCTTGGTAGAGATTCCACTATGA 57.079 36.000 0.00 0.00 41.33 2.15
595 852 9.661954 AGATAAATCTTGGTAGAGATTCCACTA 57.338 33.333 1.05 0.00 43.66 2.74
596 853 8.560124 AGATAAATCTTGGTAGAGATTCCACT 57.440 34.615 1.05 0.00 43.66 4.00
597 854 9.620259 AAAGATAAATCTTGGTAGAGATTCCAC 57.380 33.333 5.99 0.00 45.83 4.02
604 861 9.250624 CGTTCCTAAAGATAAATCTTGGTAGAG 57.749 37.037 5.99 0.68 45.83 2.43
605 862 8.202137 CCGTTCCTAAAGATAAATCTTGGTAGA 58.798 37.037 5.99 0.00 45.83 2.59
606 863 8.202137 TCCGTTCCTAAAGATAAATCTTGGTAG 58.798 37.037 5.99 5.49 45.83 3.18
607 864 8.081517 TCCGTTCCTAAAGATAAATCTTGGTA 57.918 34.615 5.99 0.00 45.83 3.25
608 865 6.954232 TCCGTTCCTAAAGATAAATCTTGGT 58.046 36.000 5.99 0.00 45.83 3.67
609 866 6.483640 CCTCCGTTCCTAAAGATAAATCTTGG 59.516 42.308 5.99 4.69 45.83 3.61
610 867 6.017852 GCCTCCGTTCCTAAAGATAAATCTTG 60.018 42.308 5.99 0.00 45.83 3.02
612 869 5.130477 TGCCTCCGTTCCTAAAGATAAATCT 59.870 40.000 0.00 0.00 39.22 2.40
613 870 5.365619 TGCCTCCGTTCCTAAAGATAAATC 58.634 41.667 0.00 0.00 0.00 2.17
614 871 5.104485 ACTGCCTCCGTTCCTAAAGATAAAT 60.104 40.000 0.00 0.00 0.00 1.40
615 872 4.224370 ACTGCCTCCGTTCCTAAAGATAAA 59.776 41.667 0.00 0.00 0.00 1.40
616 873 3.773119 ACTGCCTCCGTTCCTAAAGATAA 59.227 43.478 0.00 0.00 0.00 1.75
617 874 3.371965 ACTGCCTCCGTTCCTAAAGATA 58.628 45.455 0.00 0.00 0.00 1.98
618 875 2.188817 ACTGCCTCCGTTCCTAAAGAT 58.811 47.619 0.00 0.00 0.00 2.40
619 876 1.640917 ACTGCCTCCGTTCCTAAAGA 58.359 50.000 0.00 0.00 0.00 2.52
620 877 3.821421 ATACTGCCTCCGTTCCTAAAG 57.179 47.619 0.00 0.00 0.00 1.85
621 878 4.284178 AGTATACTGCCTCCGTTCCTAAA 58.716 43.478 4.10 0.00 0.00 1.85
622 879 3.907221 AGTATACTGCCTCCGTTCCTAA 58.093 45.455 4.10 0.00 0.00 2.69
623 880 3.589951 AGTATACTGCCTCCGTTCCTA 57.410 47.619 4.10 0.00 0.00 2.94
624 881 2.456073 AGTATACTGCCTCCGTTCCT 57.544 50.000 4.10 0.00 0.00 3.36
625 882 4.868314 AATAGTATACTGCCTCCGTTCC 57.132 45.455 15.90 0.00 0.00 3.62
626 883 6.572167 ACTAATAGTATACTGCCTCCGTTC 57.428 41.667 15.90 0.00 0.00 3.95
627 884 6.548622 TGAACTAATAGTATACTGCCTCCGTT 59.451 38.462 15.90 10.33 0.00 4.44
628 885 6.066690 TGAACTAATAGTATACTGCCTCCGT 58.933 40.000 15.90 2.65 0.00 4.69
629 886 6.570672 TGAACTAATAGTATACTGCCTCCG 57.429 41.667 15.90 2.06 0.00 4.63
630 887 8.202137 TGTTTGAACTAATAGTATACTGCCTCC 58.798 37.037 15.90 0.07 0.00 4.30
631 888 9.765795 ATGTTTGAACTAATAGTATACTGCCTC 57.234 33.333 15.90 4.41 0.00 4.70
632 889 9.765795 GATGTTTGAACTAATAGTATACTGCCT 57.234 33.333 15.90 2.38 0.00 4.75
633 890 9.542462 TGATGTTTGAACTAATAGTATACTGCC 57.458 33.333 15.90 0.00 0.00 4.85
648 905 7.478520 ACTACACAACTACTGATGTTTGAAC 57.521 36.000 0.00 0.00 0.00 3.18
668 925 4.025979 GCCGCATTGTGAATGTAGTACTAC 60.026 45.833 23.58 23.58 41.01 2.73
669 926 4.116961 GCCGCATTGTGAATGTAGTACTA 58.883 43.478 0.00 0.00 41.01 1.82
677 1055 0.798009 GGAACGCCGCATTGTGAATG 60.798 55.000 0.00 0.00 41.85 2.67
700 1078 2.575279 ACTGGTGAGCAGAGGATGAAAT 59.425 45.455 19.57 0.00 0.00 2.17
701 1079 1.980765 ACTGGTGAGCAGAGGATGAAA 59.019 47.619 19.57 0.00 0.00 2.69
730 1108 3.610911 AGTTTTAGTAGTGGCAGCATCC 58.389 45.455 0.00 0.00 0.00 3.51
743 1121 6.592870 AGAAGAACCAGCACTTAGTTTTAGT 58.407 36.000 0.00 0.00 0.00 2.24
744 1122 6.931840 AGAGAAGAACCAGCACTTAGTTTTAG 59.068 38.462 0.00 0.00 0.00 1.85
745 1123 6.827727 AGAGAAGAACCAGCACTTAGTTTTA 58.172 36.000 0.00 0.00 0.00 1.52
746 1124 5.685728 AGAGAAGAACCAGCACTTAGTTTT 58.314 37.500 0.00 0.00 0.00 2.43
747 1125 5.297569 AGAGAAGAACCAGCACTTAGTTT 57.702 39.130 0.00 0.00 0.00 2.66
748 1126 4.965200 AGAGAAGAACCAGCACTTAGTT 57.035 40.909 0.00 0.00 0.00 2.24
828 1206 5.354234 ACGAGCGGATTGAAAGACATTATTT 59.646 36.000 0.00 0.00 0.00 1.40
829 1207 4.876107 ACGAGCGGATTGAAAGACATTATT 59.124 37.500 0.00 0.00 0.00 1.40
830 1208 4.442706 ACGAGCGGATTGAAAGACATTAT 58.557 39.130 0.00 0.00 0.00 1.28
831 1209 3.857052 ACGAGCGGATTGAAAGACATTA 58.143 40.909 0.00 0.00 0.00 1.90
839 1217 1.079405 GGTGGACGAGCGGATTGAA 60.079 57.895 0.00 0.00 0.00 2.69
902 1280 5.455056 TGTAGGATTAGCAAGCTACTAGC 57.545 43.478 0.40 0.00 42.84 3.42
903 1281 7.596995 GTGAATGTAGGATTAGCAAGCTACTAG 59.403 40.741 0.40 0.00 0.00 2.57
904 1282 7.069455 TGTGAATGTAGGATTAGCAAGCTACTA 59.931 37.037 0.40 0.00 0.00 1.82
946 1325 2.892425 GAACTGGAGGGCGATGCG 60.892 66.667 0.00 0.00 0.00 4.73
1014 1393 3.643320 ACAGACAAGGATCTTGAGTGTGA 59.357 43.478 13.74 0.00 0.00 3.58
1021 1400 4.753233 CAGAGGTACAGACAAGGATCTTG 58.247 47.826 6.15 6.15 0.00 3.02
1022 1401 3.196685 GCAGAGGTACAGACAAGGATCTT 59.803 47.826 0.00 0.00 0.00 2.40
1023 1402 2.763448 GCAGAGGTACAGACAAGGATCT 59.237 50.000 0.00 0.00 0.00 2.75
1024 1403 2.159028 GGCAGAGGTACAGACAAGGATC 60.159 54.545 0.00 0.00 0.00 3.36
1025 1404 1.834263 GGCAGAGGTACAGACAAGGAT 59.166 52.381 0.00 0.00 0.00 3.24
1026 1405 1.267121 GGCAGAGGTACAGACAAGGA 58.733 55.000 0.00 0.00 0.00 3.36
1033 1412 1.347707 TGTTCTTGGGCAGAGGTACAG 59.652 52.381 0.00 0.00 31.12 2.74
1068 1479 3.620374 GTCACACGTACTAGGAATCTCGA 59.380 47.826 0.00 0.00 0.00 4.04
1070 1481 6.674694 TTAGTCACACGTACTAGGAATCTC 57.325 41.667 0.00 0.00 31.37 2.75
1100 1515 7.463544 TGTCGACAATAATGTAAAATGAGCTG 58.536 34.615 17.62 0.00 40.74 4.24
1111 1538 6.258727 GGTGATCTTCATGTCGACAATAATGT 59.741 38.462 24.13 7.91 44.25 2.71
1213 1654 2.755542 CTTGTCGAGCACGGTGAGCT 62.756 60.000 13.29 1.88 46.82 4.09
1811 2276 0.031178 GGCTGAAGTGCACCTTGTTG 59.969 55.000 14.63 0.42 32.03 3.33
1922 2393 4.170062 CGCGCCTTGGTCATGCTG 62.170 66.667 0.00 0.00 0.00 4.41
1988 2459 4.537433 GGGCTCATCCGCGCTCTT 62.537 66.667 5.56 0.00 39.48 2.85
2138 2609 3.585862 GATGAACGACTTGAAGTAGCCA 58.414 45.455 5.33 4.75 0.00 4.75
2180 2651 2.604686 AGCCGCTCCTTCTCCACA 60.605 61.111 0.00 0.00 0.00 4.17
2218 2689 1.300963 GGGCTCAGCACCATCTCAA 59.699 57.895 0.00 0.00 0.00 3.02
2396 2875 2.510238 ATGTCGCGGCTGAAGAGC 60.510 61.111 13.81 0.00 45.40 4.09
2501 2981 2.168326 ATGTGTGCGTGATGTTCTCA 57.832 45.000 0.00 0.00 0.00 3.27
2504 2984 1.967762 CCAATGTGTGCGTGATGTTC 58.032 50.000 0.00 0.00 0.00 3.18
2505 2985 0.039256 GCCAATGTGTGCGTGATGTT 60.039 50.000 0.00 0.00 0.00 2.71
2507 2987 0.730155 GTGCCAATGTGTGCGTGATG 60.730 55.000 0.00 0.00 0.00 3.07
2508 2988 1.171549 TGTGCCAATGTGTGCGTGAT 61.172 50.000 0.00 0.00 0.00 3.06
2509 2989 1.171549 ATGTGCCAATGTGTGCGTGA 61.172 50.000 0.00 0.00 0.00 4.35
2510 2990 1.004785 CATGTGCCAATGTGTGCGTG 61.005 55.000 0.00 0.00 0.00 5.34
2512 2992 2.089936 GCATGTGCCAATGTGTGCG 61.090 57.895 0.00 0.00 34.31 5.34
2514 2994 2.943449 TATGCATGTGCCAATGTGTG 57.057 45.000 10.16 0.00 41.18 3.82
2573 3070 9.295825 TGTTTACTCTTCCAAAACATCATGTAT 57.704 29.630 0.00 0.00 37.99 2.29
2609 3365 9.551734 TCATGTTCACCATCTTCTGAATATTAG 57.448 33.333 0.00 0.00 28.79 1.73
2720 3478 9.995003 GTGGAGAAGATGAATATATCAGAAGTT 57.005 33.333 0.00 0.00 42.53 2.66
2721 3479 9.152327 TGTGGAGAAGATGAATATATCAGAAGT 57.848 33.333 0.00 0.00 42.53 3.01
2722 3480 9.421806 GTGTGGAGAAGATGAATATATCAGAAG 57.578 37.037 0.00 0.00 42.53 2.85
2723 3481 9.152327 AGTGTGGAGAAGATGAATATATCAGAA 57.848 33.333 0.00 0.00 42.53 3.02
2724 3482 8.718158 AGTGTGGAGAAGATGAATATATCAGA 57.282 34.615 0.00 0.00 42.53 3.27
2725 3483 8.034215 GGAGTGTGGAGAAGATGAATATATCAG 58.966 40.741 0.00 0.00 42.53 2.90
2726 3484 7.038729 GGGAGTGTGGAGAAGATGAATATATCA 60.039 40.741 0.00 0.00 43.67 2.15
2727 3485 7.327214 GGGAGTGTGGAGAAGATGAATATATC 58.673 42.308 0.00 0.00 0.00 1.63
2728 3486 6.214412 GGGGAGTGTGGAGAAGATGAATATAT 59.786 42.308 0.00 0.00 0.00 0.86
2729 3487 5.544176 GGGGAGTGTGGAGAAGATGAATATA 59.456 44.000 0.00 0.00 0.00 0.86
2730 3488 4.349342 GGGGAGTGTGGAGAAGATGAATAT 59.651 45.833 0.00 0.00 0.00 1.28
2731 3489 3.711704 GGGGAGTGTGGAGAAGATGAATA 59.288 47.826 0.00 0.00 0.00 1.75
2732 3490 2.507471 GGGGAGTGTGGAGAAGATGAAT 59.493 50.000 0.00 0.00 0.00 2.57
2733 3491 1.909302 GGGGAGTGTGGAGAAGATGAA 59.091 52.381 0.00 0.00 0.00 2.57
2734 3492 1.079490 AGGGGAGTGTGGAGAAGATGA 59.921 52.381 0.00 0.00 0.00 2.92
2735 3493 1.484240 GAGGGGAGTGTGGAGAAGATG 59.516 57.143 0.00 0.00 0.00 2.90
2736 3494 1.364328 AGAGGGGAGTGTGGAGAAGAT 59.636 52.381 0.00 0.00 0.00 2.40
2737 3495 0.787084 AGAGGGGAGTGTGGAGAAGA 59.213 55.000 0.00 0.00 0.00 2.87
2738 3496 1.190643 GAGAGGGGAGTGTGGAGAAG 58.809 60.000 0.00 0.00 0.00 2.85
2739 3497 0.787084 AGAGAGGGGAGTGTGGAGAA 59.213 55.000 0.00 0.00 0.00 2.87
2748 3506 1.298014 GTGGTGCAAGAGAGGGGAG 59.702 63.158 0.00 0.00 0.00 4.30
2751 3509 0.393537 GGATGTGGTGCAAGAGAGGG 60.394 60.000 0.00 0.00 0.00 4.30
2774 3532 3.050275 GTTGCCGCCTGGAGTCAC 61.050 66.667 0.00 0.00 37.49 3.67
2798 3556 0.322636 TCCGTCGAAAGGCTCTCTCT 60.323 55.000 3.46 0.00 0.00 3.10
2800 3558 0.322636 TCTCCGTCGAAAGGCTCTCT 60.323 55.000 3.46 0.00 0.00 3.10
3015 3812 0.878416 AACACAAACATATGCGCCGT 59.122 45.000 4.18 0.00 0.00 5.68
3022 3819 2.493278 GCCTGCAGGAACACAAACATAT 59.507 45.455 37.21 0.00 37.39 1.78
3045 3842 1.000171 GTTGTACCGTCGTTCCTCCTT 60.000 52.381 0.00 0.00 0.00 3.36
3093 3890 2.267961 GTCGATTTGGCCCTCCGT 59.732 61.111 0.00 0.00 34.14 4.69
3147 3945 1.003233 GAAGTTGGGATTCACCTCGGT 59.997 52.381 0.00 0.00 38.98 4.69
3258 4057 0.244450 ACGTTGTTCTTATCCGCGGA 59.756 50.000 33.12 33.12 0.00 5.54
3259 4058 0.643820 GACGTTGTTCTTATCCGCGG 59.356 55.000 22.12 22.12 0.00 6.46
3312 4111 3.256960 GTCCCACCAGGCCTTCCA 61.257 66.667 0.00 0.00 34.51 3.53
3315 4114 3.637273 GTCGTCCCACCAGGCCTT 61.637 66.667 0.00 0.00 34.51 4.35
3340 4142 2.451490 TCATGGAAATAAAGGCGCCAA 58.549 42.857 31.54 14.46 31.53 4.52
3453 4255 0.836400 AACATGGGAGACGGACTGGT 60.836 55.000 0.00 0.00 0.00 4.00
3476 4278 1.691976 ACCGATCAAGTGAAGGTGTGA 59.308 47.619 10.01 0.00 37.61 3.58
3477 4279 2.069273 GACCGATCAAGTGAAGGTGTG 58.931 52.381 14.19 0.00 38.59 3.82
3478 4280 1.971357 AGACCGATCAAGTGAAGGTGT 59.029 47.619 14.19 9.07 38.59 4.16
3479 4281 2.751166 AGACCGATCAAGTGAAGGTG 57.249 50.000 14.19 0.00 38.59 4.00
3480 4282 4.440250 CGATAAGACCGATCAAGTGAAGGT 60.440 45.833 10.45 10.45 40.28 3.50
3481 4283 4.045104 CGATAAGACCGATCAAGTGAAGG 58.955 47.826 0.00 5.06 33.82 3.46
3482 4284 3.487574 GCGATAAGACCGATCAAGTGAAG 59.512 47.826 0.00 0.00 0.00 3.02
3483 4285 3.130516 AGCGATAAGACCGATCAAGTGAA 59.869 43.478 0.00 0.00 0.00 3.18
3484 4286 2.688446 AGCGATAAGACCGATCAAGTGA 59.312 45.455 0.00 0.00 0.00 3.41
3485 4287 2.791560 CAGCGATAAGACCGATCAAGTG 59.208 50.000 0.00 0.00 0.00 3.16
3486 4288 2.223829 CCAGCGATAAGACCGATCAAGT 60.224 50.000 0.00 0.00 0.00 3.16
3487 4289 2.223829 ACCAGCGATAAGACCGATCAAG 60.224 50.000 0.00 0.00 0.00 3.02
3488 4290 1.754803 ACCAGCGATAAGACCGATCAA 59.245 47.619 0.00 0.00 0.00 2.57
3489 4291 1.067060 CACCAGCGATAAGACCGATCA 59.933 52.381 0.00 0.00 0.00 2.92
3490 4292 1.772182 CACCAGCGATAAGACCGATC 58.228 55.000 0.00 0.00 0.00 3.69
3491 4293 0.249489 GCACCAGCGATAAGACCGAT 60.249 55.000 0.00 0.00 0.00 4.18
3492 4294 1.141019 GCACCAGCGATAAGACCGA 59.859 57.895 0.00 0.00 0.00 4.69
3493 4295 3.706140 GCACCAGCGATAAGACCG 58.294 61.111 0.00 0.00 0.00 4.79
3503 4305 1.009829 CCGTCTTCATAAGCACCAGC 58.990 55.000 0.00 0.00 42.56 4.85
3504 4306 1.009829 GCCGTCTTCATAAGCACCAG 58.990 55.000 0.00 0.00 0.00 4.00
3505 4307 0.739462 CGCCGTCTTCATAAGCACCA 60.739 55.000 0.00 0.00 0.00 4.17
3506 4308 1.429148 CCGCCGTCTTCATAAGCACC 61.429 60.000 0.00 0.00 0.00 5.01
3507 4309 0.459585 TCCGCCGTCTTCATAAGCAC 60.460 55.000 0.00 0.00 0.00 4.40
3508 4310 0.464036 ATCCGCCGTCTTCATAAGCA 59.536 50.000 0.00 0.00 0.00 3.91
3509 4311 0.861837 CATCCGCCGTCTTCATAAGC 59.138 55.000 0.00 0.00 0.00 3.09
3510 4312 2.509052 TCATCCGCCGTCTTCATAAG 57.491 50.000 0.00 0.00 0.00 1.73
3511 4313 2.483013 CCTTCATCCGCCGTCTTCATAA 60.483 50.000 0.00 0.00 0.00 1.90
3512 4314 1.068588 CCTTCATCCGCCGTCTTCATA 59.931 52.381 0.00 0.00 0.00 2.15
3513 4315 0.179073 CCTTCATCCGCCGTCTTCAT 60.179 55.000 0.00 0.00 0.00 2.57
3514 4316 1.218047 CCTTCATCCGCCGTCTTCA 59.782 57.895 0.00 0.00 0.00 3.02
3515 4317 0.806492 GTCCTTCATCCGCCGTCTTC 60.806 60.000 0.00 0.00 0.00 2.87
3516 4318 1.218316 GTCCTTCATCCGCCGTCTT 59.782 57.895 0.00 0.00 0.00 3.01
3517 4319 2.893398 GTCCTTCATCCGCCGTCT 59.107 61.111 0.00 0.00 0.00 4.18
3518 4320 2.582498 CGTCCTTCATCCGCCGTC 60.582 66.667 0.00 0.00 0.00 4.79
3519 4321 4.814294 GCGTCCTTCATCCGCCGT 62.814 66.667 0.00 0.00 41.50 5.68
3522 4324 4.814294 ACCGCGTCCTTCATCCGC 62.814 66.667 4.92 0.00 43.74 5.54
3523 4325 2.582498 GACCGCGTCCTTCATCCG 60.582 66.667 4.92 0.00 0.00 4.18
3532 4334 3.116531 CCTTTTCGGGACCGCGTC 61.117 66.667 4.92 2.44 39.59 5.19
3541 4343 1.339929 CCCTTGTTGTTCCCTTTTCGG 59.660 52.381 0.00 0.00 0.00 4.30
3542 4344 1.269569 GCCCTTGTTGTTCCCTTTTCG 60.270 52.381 0.00 0.00 0.00 3.46
3543 4345 2.039418 AGCCCTTGTTGTTCCCTTTTC 58.961 47.619 0.00 0.00 0.00 2.29
3544 4346 2.170397 CAAGCCCTTGTTGTTCCCTTTT 59.830 45.455 0.00 0.00 35.92 2.27
3545 4347 1.762370 CAAGCCCTTGTTGTTCCCTTT 59.238 47.619 0.00 0.00 35.92 3.11
3546 4348 1.413118 CAAGCCCTTGTTGTTCCCTT 58.587 50.000 0.00 0.00 35.92 3.95
3547 4349 0.469892 CCAAGCCCTTGTTGTTCCCT 60.470 55.000 7.21 0.00 38.85 4.20
3548 4350 0.469144 TCCAAGCCCTTGTTGTTCCC 60.469 55.000 7.21 0.00 38.85 3.97
3549 4351 0.673985 GTCCAAGCCCTTGTTGTTCC 59.326 55.000 7.21 0.00 38.85 3.62
3550 4352 0.310854 CGTCCAAGCCCTTGTTGTTC 59.689 55.000 7.21 0.00 38.85 3.18
3551 4353 0.395173 ACGTCCAAGCCCTTGTTGTT 60.395 50.000 7.21 0.00 38.85 2.83
3552 4354 1.226262 ACGTCCAAGCCCTTGTTGT 59.774 52.632 7.21 0.49 38.85 3.32
3553 4355 4.157607 ACGTCCAAGCCCTTGTTG 57.842 55.556 7.21 0.00 38.85 3.33


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.