Multiple sequence alignment - TraesCS2B01G518600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G518600 chr2B 100.000 6883 0 0 1 6883 713691731 713698613 0.000000e+00 12711.0
1 TraesCS2B01G518600 chr2B 97.633 169 4 0 4067 4235 664125200 664125032 2.430000e-74 291.0
2 TraesCS2B01G518600 chr2B 88.177 203 12 3 6680 6882 783112078 783111888 1.490000e-56 231.0
3 TraesCS2B01G518600 chr2A 94.201 1966 81 15 1851 3799 723826984 723828933 0.000000e+00 2968.0
4 TraesCS2B01G518600 chr2A 90.744 2204 105 44 4228 6382 723829036 723831189 0.000000e+00 2848.0
5 TraesCS2B01G518600 chr2A 91.819 1259 63 15 597 1847 723825720 723826946 0.000000e+00 1718.0
6 TraesCS2B01G518600 chr2A 92.846 629 41 4 597 1225 691568582 691569206 0.000000e+00 909.0
7 TraesCS2B01G518600 chr2A 93.785 354 16 2 6533 6883 723848639 723848989 1.700000e-145 527.0
8 TraesCS2B01G518600 chr2A 91.096 292 15 4 6169 6458 723848355 723848637 1.080000e-102 385.0
9 TraesCS2B01G518600 chr2A 83.099 426 38 17 168 574 723825179 723825589 2.360000e-94 357.0
10 TraesCS2B01G518600 chr2A 80.696 316 29 13 6437 6725 723831400 723831710 4.180000e-52 217.0
11 TraesCS2B01G518600 chr2A 91.558 154 13 0 5656 5809 723836725 723836878 5.410000e-51 213.0
12 TraesCS2B01G518600 chr2A 94.495 109 2 2 3961 4068 723828932 723829037 1.540000e-36 165.0
13 TraesCS2B01G518600 chr2A 92.958 71 3 1 6814 6882 723831963 723832033 1.220000e-17 102.0
14 TraesCS2B01G518600 chr2A 76.046 263 20 17 397 639 691568344 691568583 5.680000e-16 97.1
15 TraesCS2B01G518600 chr2D 91.356 2198 106 31 4228 6382 589504163 589506319 0.000000e+00 2929.0
16 TraesCS2B01G518600 chr2D 89.403 1925 164 19 1853 3769 589502080 589503972 0.000000e+00 2388.0
17 TraesCS2B01G518600 chr2D 89.127 1260 76 20 597 1822 589500500 589501732 0.000000e+00 1511.0
18 TraesCS2B01G518600 chr2D 79.533 899 135 32 2306 3182 13771295 13770424 4.600000e-166 595.0
19 TraesCS2B01G518600 chr2D 76.796 1030 168 46 2388 3392 13723230 13724213 4.760000e-141 512.0
20 TraesCS2B01G518600 chr2D 95.429 175 8 0 4055 4229 304655293 304655119 5.260000e-71 279.0
21 TraesCS2B01G518600 chr2D 92.899 169 12 0 3793 3961 475088507 475088339 5.330000e-61 246.0
22 TraesCS2B01G518600 chr2D 86.264 182 17 5 6528 6705 589506532 589506709 2.530000e-44 191.0
23 TraesCS2B01G518600 chr2D 94.444 108 6 0 3961 4068 589504057 589504164 4.270000e-37 167.0
24 TraesCS2B01G518600 chr4A 90.078 1925 160 14 1853 3769 684978634 684976733 0.000000e+00 2468.0
25 TraesCS2B01G518600 chr4A 89.632 1630 106 32 4704 6301 684976066 684974468 0.000000e+00 2015.0
26 TraesCS2B01G518600 chr4A 86.700 1594 105 54 308 1822 684980545 684978980 0.000000e+00 1670.0
27 TraesCS2B01G518600 chr4A 84.912 908 121 8 2661 3563 602260793 602259897 0.000000e+00 904.0
28 TraesCS2B01G518600 chr4A 82.834 1002 158 9 2294 3282 602864252 602863252 0.000000e+00 885.0
29 TraesCS2B01G518600 chr4A 89.267 382 22 11 4277 4643 684976569 684976192 1.750000e-125 460.0
30 TraesCS2B01G518600 chr4A 82.857 350 58 2 2292 2640 602261189 602260841 5.180000e-81 313.0
31 TraesCS2B01G518600 chr4A 82.609 299 28 12 3328 3620 602863235 602862955 6.900000e-60 243.0
32 TraesCS2B01G518600 chr4A 98.276 58 1 0 3961 4018 684976661 684976604 1.220000e-17 102.0
33 TraesCS2B01G518600 chr4A 91.837 49 0 2 168 212 684980665 684980617 1.600000e-06 65.8
34 TraesCS2B01G518600 chr4B 83.557 1344 194 16 2292 3620 3785997 3784666 0.000000e+00 1232.0
35 TraesCS2B01G518600 chr4B 83.031 772 112 14 2872 3641 3855614 3856368 0.000000e+00 682.0
36 TraesCS2B01G518600 chr4B 85.085 295 44 0 2293 2587 411851613 411851319 1.120000e-77 302.0
37 TraesCS2B01G518600 chr4B 96.491 171 4 2 4066 4234 431792317 431792147 1.460000e-71 281.0
38 TraesCS2B01G518600 chr4D 82.743 1298 175 29 2294 3554 3259649 3260934 0.000000e+00 1110.0
39 TraesCS2B01G518600 chr4D 83.161 1158 169 17 2293 3442 2072102 2070963 0.000000e+00 1035.0
40 TraesCS2B01G518600 chr4D 93.976 166 10 0 3797 3962 22589468 22589303 1.150000e-62 252.0
41 TraesCS2B01G518600 chr4D 92.486 173 13 0 3790 3962 477898787 477898959 1.480000e-61 248.0
42 TraesCS2B01G518600 chr4D 91.111 180 13 1 3783 3962 75782229 75782053 2.480000e-59 241.0
43 TraesCS2B01G518600 chr6A 92.429 634 38 6 597 1225 36679669 36680297 0.000000e+00 896.0
44 TraesCS2B01G518600 chr6A 92.528 629 42 5 597 1225 584585283 584585906 0.000000e+00 896.0
45 TraesCS2B01G518600 chr6A 91.256 629 45 7 597 1225 64724564 64723946 0.000000e+00 848.0
46 TraesCS2B01G518600 chr6A 76.426 263 19 17 397 639 64724802 64724563 1.220000e-17 102.0
47 TraesCS2B01G518600 chr6A 92.982 57 3 1 1 56 337715386 337715330 1.590000e-11 82.4
48 TraesCS2B01G518600 chr1A 91.097 629 52 4 597 1225 573145592 573146216 0.000000e+00 848.0
49 TraesCS2B01G518600 chr1A 76.733 202 17 13 365 564 573145332 573145505 1.230000e-12 86.1
50 TraesCS2B01G518600 chr3D 79.314 1078 152 41 2335 3391 529495450 529496477 0.000000e+00 689.0
51 TraesCS2B01G518600 chrUn 81.807 786 124 11 2846 3620 47780299 47781076 5.820000e-180 641.0
52 TraesCS2B01G518600 chrUn 76.219 677 128 25 2468 3123 28782380 28781716 1.850000e-85 327.0
53 TraesCS2B01G518600 chrUn 74.457 368 59 24 5501 5861 248995958 248996297 7.250000e-25 126.0
54 TraesCS2B01G518600 chrUn 74.521 365 58 24 5504 5861 332781814 332781478 7.250000e-25 126.0
55 TraesCS2B01G518600 chr5D 84.301 637 94 4 2496 3127 438553207 438553842 9.810000e-173 617.0
56 TraesCS2B01G518600 chr5D 86.019 515 66 5 2711 3224 438519245 438519754 1.310000e-151 547.0
57 TraesCS2B01G518600 chr5D 77.530 988 136 41 2466 3429 560225801 560224876 3.680000e-142 516.0
58 TraesCS2B01G518600 chr5D 91.713 181 14 1 3783 3962 92111729 92111549 4.120000e-62 250.0
59 TraesCS2B01G518600 chr5D 92.486 173 11 2 3791 3962 28487840 28487669 5.330000e-61 246.0
60 TraesCS2B01G518600 chr5D 82.418 182 19 10 5725 5905 532281101 532280932 5.560000e-31 147.0
61 TraesCS2B01G518600 chr7D 79.684 886 138 25 2310 3183 624770195 624769340 9.880000e-168 601.0
62 TraesCS2B01G518600 chr7D 76.783 715 139 18 2468 3164 552325965 552325260 6.520000e-100 375.0
63 TraesCS2B01G518600 chr7D 95.652 46 2 0 1 46 332949932 332949887 2.660000e-09 75.0
64 TraesCS2B01G518600 chr7B 98.204 167 3 0 4063 4229 497576620 497576786 6.750000e-75 292.0
65 TraesCS2B01G518600 chr7B 95.954 173 5 2 4057 4229 249674882 249675052 5.260000e-71 279.0
66 TraesCS2B01G518600 chr5B 97.590 166 4 0 4067 4232 701551811 701551646 1.130000e-72 285.0
67 TraesCS2B01G518600 chr5B 91.803 183 13 2 3795 3977 540367881 540367701 3.190000e-63 254.0
68 TraesCS2B01G518600 chr5B 74.521 365 58 24 5504 5861 672434105 672433769 7.250000e-25 126.0
69 TraesCS2B01G518600 chr5B 74.521 365 58 24 5504 5861 672467520 672467184 7.250000e-25 126.0
70 TraesCS2B01G518600 chr5B 83.459 133 17 4 5725 5855 671482445 671482574 1.210000e-22 119.0
71 TraesCS2B01G518600 chr5B 94.545 55 3 0 1 55 247182853 247182799 1.230000e-12 86.1
72 TraesCS2B01G518600 chr6D 97.576 165 4 0 4065 4229 90890446 90890282 4.060000e-72 283.0
73 TraesCS2B01G518600 chr6D 100.000 30 0 0 3128 3157 14523197 14523226 1.000000e-03 56.5
74 TraesCS2B01G518600 chr1B 96.000 175 6 1 4060 4233 561836390 561836564 4.060000e-72 283.0
75 TraesCS2B01G518600 chr3B 96.450 169 6 0 4066 4234 812681013 812681181 5.260000e-71 279.0
76 TraesCS2B01G518600 chr3B 91.011 178 16 0 3785 3962 571752512 571752689 2.480000e-59 241.0
77 TraesCS2B01G518600 chr5A 91.620 179 14 1 3786 3963 382566815 382566637 5.330000e-61 246.0
78 TraesCS2B01G518600 chr5A 100.000 29 0 0 9 37 661197432 661197460 3.000000e-03 54.7
79 TraesCS2B01G518600 chr6B 98.182 55 1 0 1 55 3667377 3667323 5.680000e-16 97.1
80 TraesCS2B01G518600 chr6B 87.273 55 6 1 1 55 415464878 415464931 2.070000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G518600 chr2B 713691731 713698613 6882 False 12711.000000 12711 100.0000 1 6883 1 chr2B.!!$F1 6882
1 TraesCS2B01G518600 chr2A 723825179 723832033 6854 False 1196.428571 2968 89.7160 168 6882 7 chr2A.!!$F3 6714
2 TraesCS2B01G518600 chr2A 691568344 691569206 862 False 503.050000 909 84.4460 397 1225 2 chr2A.!!$F2 828
3 TraesCS2B01G518600 chr2A 723848355 723848989 634 False 456.000000 527 92.4405 6169 6883 2 chr2A.!!$F4 714
4 TraesCS2B01G518600 chr2D 589500500 589506709 6209 False 1437.200000 2929 90.1188 597 6705 5 chr2D.!!$F2 6108
5 TraesCS2B01G518600 chr2D 13770424 13771295 871 True 595.000000 595 79.5330 2306 3182 1 chr2D.!!$R1 876
6 TraesCS2B01G518600 chr2D 13723230 13724213 983 False 512.000000 512 76.7960 2388 3392 1 chr2D.!!$F1 1004
7 TraesCS2B01G518600 chr4A 684974468 684980665 6197 True 1130.133333 2468 90.9650 168 6301 6 chr4A.!!$R3 6133
8 TraesCS2B01G518600 chr4A 602259897 602261189 1292 True 608.500000 904 83.8845 2292 3563 2 chr4A.!!$R1 1271
9 TraesCS2B01G518600 chr4A 602862955 602864252 1297 True 564.000000 885 82.7215 2294 3620 2 chr4A.!!$R2 1326
10 TraesCS2B01G518600 chr4B 3784666 3785997 1331 True 1232.000000 1232 83.5570 2292 3620 1 chr4B.!!$R1 1328
11 TraesCS2B01G518600 chr4B 3855614 3856368 754 False 682.000000 682 83.0310 2872 3641 1 chr4B.!!$F1 769
12 TraesCS2B01G518600 chr4D 3259649 3260934 1285 False 1110.000000 1110 82.7430 2294 3554 1 chr4D.!!$F1 1260
13 TraesCS2B01G518600 chr4D 2070963 2072102 1139 True 1035.000000 1035 83.1610 2293 3442 1 chr4D.!!$R1 1149
14 TraesCS2B01G518600 chr6A 36679669 36680297 628 False 896.000000 896 92.4290 597 1225 1 chr6A.!!$F1 628
15 TraesCS2B01G518600 chr6A 584585283 584585906 623 False 896.000000 896 92.5280 597 1225 1 chr6A.!!$F2 628
16 TraesCS2B01G518600 chr6A 64723946 64724802 856 True 475.000000 848 83.8410 397 1225 2 chr6A.!!$R2 828
17 TraesCS2B01G518600 chr1A 573145332 573146216 884 False 467.050000 848 83.9150 365 1225 2 chr1A.!!$F1 860
18 TraesCS2B01G518600 chr3D 529495450 529496477 1027 False 689.000000 689 79.3140 2335 3391 1 chr3D.!!$F1 1056
19 TraesCS2B01G518600 chrUn 47780299 47781076 777 False 641.000000 641 81.8070 2846 3620 1 chrUn.!!$F1 774
20 TraesCS2B01G518600 chrUn 28781716 28782380 664 True 327.000000 327 76.2190 2468 3123 1 chrUn.!!$R1 655
21 TraesCS2B01G518600 chr5D 438553207 438553842 635 False 617.000000 617 84.3010 2496 3127 1 chr5D.!!$F2 631
22 TraesCS2B01G518600 chr5D 438519245 438519754 509 False 547.000000 547 86.0190 2711 3224 1 chr5D.!!$F1 513
23 TraesCS2B01G518600 chr5D 560224876 560225801 925 True 516.000000 516 77.5300 2466 3429 1 chr5D.!!$R4 963
24 TraesCS2B01G518600 chr7D 624769340 624770195 855 True 601.000000 601 79.6840 2310 3183 1 chr7D.!!$R3 873
25 TraesCS2B01G518600 chr7D 552325260 552325965 705 True 375.000000 375 76.7830 2468 3164 1 chr7D.!!$R2 696

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
992 1206 0.167470 CAGCTGATTGGCAGTGAACG 59.833 55.000 8.42 0.00 46.62 3.95 F
1500 1730 0.107945 ATCTTGAGTCTCGCCTTGGC 60.108 55.000 0.75 0.75 0.00 4.52 F
2616 3200 1.000521 CTGGCATGTCCACCCACAT 60.001 57.895 4.93 0.00 40.72 3.21 F
3757 4484 0.253327 AAGGCCTTAAGAAGAGCGGG 59.747 55.000 18.87 0.00 0.00 6.13 F
3786 4565 1.078759 GTACTGCCGCTGTGCTGTAG 61.079 60.000 12.77 0.00 43.43 2.74 F
5177 6078 0.172803 GGCGTCACTCGAACAGGTAT 59.827 55.000 0.00 0.00 42.86 2.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2604 3188 0.546122 GGATGCTATGTGGGTGGACA 59.454 55.000 0.00 0.00 0.00 4.02 R
2795 3433 1.081833 ACCTGGAGGAGGATGCTGT 59.918 57.895 0.00 0.00 46.33 4.40 R
3947 4739 0.033306 ACTCCTACTCCCTCCGTTCC 60.033 60.000 0.00 0.00 0.00 3.62 R
4934 5835 1.065199 CAGCCTGCCAGAAAGATGGTA 60.065 52.381 0.00 0.00 42.75 3.25 R
5349 6256 2.083774 TGCGGGCAGAAAGAGTTATTG 58.916 47.619 0.00 0.00 0.00 1.90 R
6209 7166 0.179197 CTCGCAAGCTGATGCAACAG 60.179 55.000 18.92 18.92 46.76 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 3.902881 AAGCACTAATGGTCTGAGAGG 57.097 47.619 0.00 0.00 34.76 3.69
23 24 2.114616 AGCACTAATGGTCTGAGAGGG 58.885 52.381 0.00 0.00 0.00 4.30
24 25 1.474143 GCACTAATGGTCTGAGAGGGC 60.474 57.143 0.00 0.00 0.00 5.19
25 26 2.114616 CACTAATGGTCTGAGAGGGCT 58.885 52.381 0.00 0.00 0.00 5.19
26 27 2.114616 ACTAATGGTCTGAGAGGGCTG 58.885 52.381 0.00 0.00 0.00 4.85
27 28 1.415659 CTAATGGTCTGAGAGGGCTGG 59.584 57.143 0.00 0.00 0.00 4.85
28 29 0.252881 AATGGTCTGAGAGGGCTGGA 60.253 55.000 0.00 0.00 0.00 3.86
29 30 0.252881 ATGGTCTGAGAGGGCTGGAA 60.253 55.000 0.00 0.00 0.00 3.53
30 31 0.252881 TGGTCTGAGAGGGCTGGAAT 60.253 55.000 0.00 0.00 0.00 3.01
31 32 1.008327 TGGTCTGAGAGGGCTGGAATA 59.992 52.381 0.00 0.00 0.00 1.75
32 33 1.691434 GGTCTGAGAGGGCTGGAATAG 59.309 57.143 0.00 0.00 0.00 1.73
33 34 2.393646 GTCTGAGAGGGCTGGAATAGT 58.606 52.381 0.00 0.00 0.00 2.12
34 35 2.102252 GTCTGAGAGGGCTGGAATAGTG 59.898 54.545 0.00 0.00 0.00 2.74
35 36 0.833287 TGAGAGGGCTGGAATAGTGC 59.167 55.000 0.00 0.00 0.00 4.40
36 37 1.127343 GAGAGGGCTGGAATAGTGCT 58.873 55.000 0.00 0.00 0.00 4.40
37 38 1.069978 GAGAGGGCTGGAATAGTGCTC 59.930 57.143 0.00 0.00 0.00 4.26
38 39 0.833287 GAGGGCTGGAATAGTGCTCA 59.167 55.000 0.00 0.00 0.00 4.26
39 40 0.835941 AGGGCTGGAATAGTGCTCAG 59.164 55.000 0.00 0.00 0.00 3.35
40 41 0.543749 GGGCTGGAATAGTGCTCAGT 59.456 55.000 0.00 0.00 0.00 3.41
41 42 1.065126 GGGCTGGAATAGTGCTCAGTT 60.065 52.381 0.00 0.00 0.00 3.16
42 43 2.619074 GGGCTGGAATAGTGCTCAGTTT 60.619 50.000 0.00 0.00 0.00 2.66
43 44 3.084786 GGCTGGAATAGTGCTCAGTTTT 58.915 45.455 0.00 0.00 0.00 2.43
44 45 4.261801 GGCTGGAATAGTGCTCAGTTTTA 58.738 43.478 0.00 0.00 0.00 1.52
45 46 4.700213 GGCTGGAATAGTGCTCAGTTTTAA 59.300 41.667 0.00 0.00 0.00 1.52
46 47 5.358160 GGCTGGAATAGTGCTCAGTTTTAAT 59.642 40.000 0.00 0.00 0.00 1.40
47 48 6.261118 GCTGGAATAGTGCTCAGTTTTAATG 58.739 40.000 0.00 0.00 0.00 1.90
48 49 6.127897 GCTGGAATAGTGCTCAGTTTTAATGT 60.128 38.462 0.00 0.00 0.00 2.71
49 50 7.065803 GCTGGAATAGTGCTCAGTTTTAATGTA 59.934 37.037 0.00 0.00 0.00 2.29
50 51 9.113838 CTGGAATAGTGCTCAGTTTTAATGTAT 57.886 33.333 0.00 0.00 0.00 2.29
51 52 9.109393 TGGAATAGTGCTCAGTTTTAATGTATC 57.891 33.333 0.00 0.00 0.00 2.24
52 53 9.331282 GGAATAGTGCTCAGTTTTAATGTATCT 57.669 33.333 0.00 0.00 0.00 1.98
80 81 7.891183 AATAAATGATACACACGCTCTATCC 57.109 36.000 0.00 0.00 0.00 2.59
81 82 5.537300 AAATGATACACACGCTCTATCCT 57.463 39.130 0.00 0.00 0.00 3.24
82 83 4.775058 ATGATACACACGCTCTATCCTC 57.225 45.455 0.00 0.00 0.00 3.71
83 84 3.551846 TGATACACACGCTCTATCCTCA 58.448 45.455 0.00 0.00 0.00 3.86
84 85 3.951680 TGATACACACGCTCTATCCTCAA 59.048 43.478 0.00 0.00 0.00 3.02
85 86 4.401202 TGATACACACGCTCTATCCTCAAA 59.599 41.667 0.00 0.00 0.00 2.69
86 87 3.895232 ACACACGCTCTATCCTCAAAT 57.105 42.857 0.00 0.00 0.00 2.32
87 88 4.207891 ACACACGCTCTATCCTCAAATT 57.792 40.909 0.00 0.00 0.00 1.82
88 89 4.579869 ACACACGCTCTATCCTCAAATTT 58.420 39.130 0.00 0.00 0.00 1.82
89 90 5.003804 ACACACGCTCTATCCTCAAATTTT 58.996 37.500 0.00 0.00 0.00 1.82
90 91 5.473504 ACACACGCTCTATCCTCAAATTTTT 59.526 36.000 0.00 0.00 0.00 1.94
129 130 6.481954 TTTTTCGAGATTTCTCTTGGCTAC 57.518 37.500 6.06 0.00 40.75 3.58
130 131 5.407407 TTTCGAGATTTCTCTTGGCTACT 57.593 39.130 6.06 0.00 40.75 2.57
131 132 5.407407 TTCGAGATTTCTCTTGGCTACTT 57.593 39.130 6.06 0.00 40.75 2.24
132 133 6.525578 TTCGAGATTTCTCTTGGCTACTTA 57.474 37.500 6.06 0.00 40.75 2.24
133 134 5.892568 TCGAGATTTCTCTTGGCTACTTAC 58.107 41.667 6.06 0.00 40.75 2.34
134 135 5.044558 CGAGATTTCTCTTGGCTACTTACC 58.955 45.833 6.06 0.00 40.75 2.85
135 136 5.012328 AGATTTCTCTTGGCTACTTACCG 57.988 43.478 0.00 0.00 0.00 4.02
136 137 2.667473 TTCTCTTGGCTACTTACCGC 57.333 50.000 0.00 0.00 0.00 5.68
137 138 0.822164 TCTCTTGGCTACTTACCGCC 59.178 55.000 0.00 0.00 46.46 6.13
138 139 0.824759 CTCTTGGCTACTTACCGCCT 59.175 55.000 0.00 0.00 46.42 5.52
139 140 0.822164 TCTTGGCTACTTACCGCCTC 59.178 55.000 0.00 0.00 46.42 4.70
140 141 0.535335 CTTGGCTACTTACCGCCTCA 59.465 55.000 0.00 0.00 46.42 3.86
141 142 0.535335 TTGGCTACTTACCGCCTCAG 59.465 55.000 0.00 0.00 46.42 3.35
142 143 0.323999 TGGCTACTTACCGCCTCAGA 60.324 55.000 0.00 0.00 46.42 3.27
143 144 0.386113 GGCTACTTACCGCCTCAGAG 59.614 60.000 0.00 0.00 42.98 3.35
144 145 1.104630 GCTACTTACCGCCTCAGAGT 58.895 55.000 0.00 0.00 0.00 3.24
145 146 1.477295 GCTACTTACCGCCTCAGAGTT 59.523 52.381 0.00 0.00 0.00 3.01
146 147 2.094130 GCTACTTACCGCCTCAGAGTTT 60.094 50.000 0.00 0.00 0.00 2.66
147 148 2.457366 ACTTACCGCCTCAGAGTTTG 57.543 50.000 0.00 0.00 0.00 2.93
148 149 1.968493 ACTTACCGCCTCAGAGTTTGA 59.032 47.619 0.00 0.00 0.00 2.69
149 150 2.567615 ACTTACCGCCTCAGAGTTTGAT 59.432 45.455 0.00 0.00 34.68 2.57
150 151 3.008049 ACTTACCGCCTCAGAGTTTGATT 59.992 43.478 0.00 0.00 34.68 2.57
151 152 1.813513 ACCGCCTCAGAGTTTGATTG 58.186 50.000 0.00 0.00 34.68 2.67
152 153 1.347707 ACCGCCTCAGAGTTTGATTGA 59.652 47.619 0.00 0.00 34.68 2.57
153 154 2.005451 CCGCCTCAGAGTTTGATTGAG 58.995 52.381 0.00 0.00 38.41 3.02
154 155 2.354103 CCGCCTCAGAGTTTGATTGAGA 60.354 50.000 2.49 0.00 40.54 3.27
155 156 3.329386 CGCCTCAGAGTTTGATTGAGAA 58.671 45.455 2.49 0.00 40.54 2.87
156 157 3.748048 CGCCTCAGAGTTTGATTGAGAAA 59.252 43.478 2.49 0.00 40.54 2.52
157 158 4.214119 CGCCTCAGAGTTTGATTGAGAAAA 59.786 41.667 2.49 0.00 40.54 2.29
158 159 5.456265 GCCTCAGAGTTTGATTGAGAAAAC 58.544 41.667 2.49 0.00 40.54 2.43
159 160 5.563671 GCCTCAGAGTTTGATTGAGAAAACC 60.564 44.000 2.49 0.00 40.54 3.27
160 161 5.532406 CCTCAGAGTTTGATTGAGAAAACCA 59.468 40.000 2.49 0.00 40.54 3.67
161 162 6.039717 CCTCAGAGTTTGATTGAGAAAACCAA 59.960 38.462 2.49 0.00 40.54 3.67
162 163 7.403312 TCAGAGTTTGATTGAGAAAACCAAA 57.597 32.000 0.00 0.00 37.04 3.28
163 164 7.257722 TCAGAGTTTGATTGAGAAAACCAAAC 58.742 34.615 0.00 0.00 43.88 2.93
212 217 2.196776 CCATCCCAGGCCACATCC 59.803 66.667 5.01 0.00 0.00 3.51
215 220 1.061905 CATCCCAGGCCACATCCCTA 61.062 60.000 5.01 0.00 0.00 3.53
225 230 1.571919 CACATCCCTACGCTGCTTAC 58.428 55.000 0.00 0.00 0.00 2.34
226 231 0.464452 ACATCCCTACGCTGCTTACC 59.536 55.000 0.00 0.00 0.00 2.85
228 233 1.745320 ATCCCTACGCTGCTTACCCG 61.745 60.000 0.00 0.00 0.00 5.28
229 234 2.718073 CCCTACGCTGCTTACCCGT 61.718 63.158 0.00 0.00 38.84 5.28
230 235 1.386525 CCCTACGCTGCTTACCCGTA 61.387 60.000 0.00 0.00 36.51 4.02
231 236 0.457035 CCTACGCTGCTTACCCGTAA 59.543 55.000 0.00 0.00 37.06 3.18
233 238 2.190981 CTACGCTGCTTACCCGTAAAG 58.809 52.381 0.00 0.00 37.06 1.85
237 242 2.481185 CGCTGCTTACCCGTAAAGAAAA 59.519 45.455 0.00 0.00 0.00 2.29
356 399 2.644992 CCCGGCAGTTGCAACTTC 59.355 61.111 29.23 24.09 44.36 3.01
360 403 0.238289 CGGCAGTTGCAACTTCGAAT 59.762 50.000 31.87 12.37 44.36 3.34
361 404 1.463056 CGGCAGTTGCAACTTCGAATA 59.537 47.619 31.87 0.00 44.36 1.75
362 405 2.474526 CGGCAGTTGCAACTTCGAATAG 60.475 50.000 31.87 20.76 44.36 1.73
363 406 2.509870 GCAGTTGCAACTTCGAATAGC 58.490 47.619 29.23 22.21 41.59 2.97
479 539 3.767230 CGCTGTGAGTTCCGTGCG 61.767 66.667 0.00 0.00 37.57 5.34
483 543 4.980805 GTGAGTTCCGTGCGCCCA 62.981 66.667 4.18 0.00 0.00 5.36
484 544 4.243008 TGAGTTCCGTGCGCCCAA 62.243 61.111 4.18 0.00 0.00 4.12
485 545 2.746277 GAGTTCCGTGCGCCCAAT 60.746 61.111 4.18 0.00 0.00 3.16
486 546 2.282180 AGTTCCGTGCGCCCAATT 60.282 55.556 4.18 0.00 0.00 2.32
487 547 2.178273 GTTCCGTGCGCCCAATTC 59.822 61.111 4.18 0.00 0.00 2.17
491 551 3.508840 CGTGCGCCCAATTCTCCC 61.509 66.667 4.18 0.00 0.00 4.30
492 552 2.044946 GTGCGCCCAATTCTCCCT 60.045 61.111 4.18 0.00 0.00 4.20
493 553 2.115291 GTGCGCCCAATTCTCCCTC 61.115 63.158 4.18 0.00 0.00 4.30
494 554 2.897350 GCGCCCAATTCTCCCTCG 60.897 66.667 0.00 0.00 0.00 4.63
495 555 2.900273 CGCCCAATTCTCCCTCGA 59.100 61.111 0.00 0.00 0.00 4.04
496 556 1.447643 CGCCCAATTCTCCCTCGAT 59.552 57.895 0.00 0.00 0.00 3.59
497 557 0.179045 CGCCCAATTCTCCCTCGATT 60.179 55.000 0.00 0.00 0.00 3.34
498 558 1.598882 GCCCAATTCTCCCTCGATTC 58.401 55.000 0.00 0.00 0.00 2.52
499 559 1.815795 GCCCAATTCTCCCTCGATTCC 60.816 57.143 0.00 0.00 0.00 3.01
500 560 1.541233 CCCAATTCTCCCTCGATTCCG 60.541 57.143 0.00 0.00 37.07 4.30
501 561 1.412710 CCAATTCTCCCTCGATTCCGA 59.587 52.381 0.00 0.00 43.35 4.55
505 565 0.539901 TCTCCCTCGATTCCGATCCC 60.540 60.000 0.00 0.00 44.62 3.85
520 580 3.071602 CCGATCCCAGTGTCCTCATAATT 59.928 47.826 0.00 0.00 0.00 1.40
523 583 2.158957 TCCCAGTGTCCTCATAATTCGC 60.159 50.000 0.00 0.00 0.00 4.70
526 586 3.430790 CCAGTGTCCTCATAATTCGCTCA 60.431 47.826 0.00 0.00 0.00 4.26
549 609 2.625639 CCTGATAGAGGCCAGGGTTAT 58.374 52.381 5.01 0.00 44.68 1.89
557 618 2.835156 GAGGCCAGGGTTATCTATCCTC 59.165 54.545 5.01 0.00 31.86 3.71
583 663 4.633175 TGTTCGGTTAGTGCTGTTTATGA 58.367 39.130 0.00 0.00 0.00 2.15
618 792 2.389962 TAGGGTTCAATTCGTTCGGG 57.610 50.000 0.00 0.00 0.00 5.14
627 805 1.425412 ATTCGTTCGGGTCAGTTTCG 58.575 50.000 0.00 0.00 0.00 3.46
638 816 3.998341 GGGTCAGTTTCGTTGCAATACTA 59.002 43.478 0.59 0.00 0.00 1.82
681 873 1.593933 CATGCTGTGTTGTTTTGCCAC 59.406 47.619 0.00 0.00 0.00 5.01
735 933 1.279496 TATCAACTGCACCTCTGCCT 58.721 50.000 0.00 0.00 43.51 4.75
737 935 2.031516 CAACTGCACCTCTGCCTCG 61.032 63.158 0.00 0.00 43.51 4.63
738 936 2.511452 AACTGCACCTCTGCCTCGT 61.511 57.895 0.00 0.00 43.51 4.18
758 956 7.380065 GCCTCGTATACTTCTTTCTATGTCAAG 59.620 40.741 0.56 0.00 0.00 3.02
780 981 2.125512 GCGTCTGCTGTGGGTAGG 60.126 66.667 0.00 0.00 38.39 3.18
840 1041 4.437682 TGTTTCAATGAGTCAAGTCCCT 57.562 40.909 0.00 0.00 0.00 4.20
900 1111 1.507120 CACGTTTTGTTCGCTTTGTCG 59.493 47.619 0.00 0.00 0.00 4.35
989 1203 0.614812 TAGCAGCTGATTGGCAGTGA 59.385 50.000 20.43 0.00 46.62 3.41
992 1206 0.167470 CAGCTGATTGGCAGTGAACG 59.833 55.000 8.42 0.00 46.62 3.95
1011 1225 2.268920 GGCAAGATGTCTGGCGGA 59.731 61.111 3.44 0.00 43.86 5.54
1031 1245 3.503748 GGAAATGTGAGTTGCTGCTACTT 59.496 43.478 17.31 1.10 0.00 2.24
1032 1246 4.022849 GGAAATGTGAGTTGCTGCTACTTT 60.023 41.667 17.31 7.84 0.00 2.66
1105 1327 3.401182 GCTGATCCTCTGCTTCTTATGG 58.599 50.000 0.00 0.00 38.17 2.74
1225 1447 3.921677 TCCACGATGTCCTACTGTTTTC 58.078 45.455 0.00 0.00 0.00 2.29
1287 1515 8.741101 TGTTCAATACATTGCTAACATTTGTC 57.259 30.769 5.54 0.00 37.68 3.18
1494 1724 3.579709 TGAAGTTGATCTTGAGTCTCGC 58.420 45.455 0.00 0.00 36.40 5.03
1500 1730 0.107945 ATCTTGAGTCTCGCCTTGGC 60.108 55.000 0.75 0.75 0.00 4.52
1591 1821 5.804639 TCATTGTTGTATAACCTGTGAGCT 58.195 37.500 0.00 0.00 35.92 4.09
1622 1852 6.385033 GGTGTGATTCCTCAATTTCTTCTTG 58.615 40.000 0.00 0.00 31.85 3.02
1627 1857 8.734386 GTGATTCCTCAATTTCTTCTTGTGTAT 58.266 33.333 0.00 0.00 31.85 2.29
1713 1943 8.688151 ACCTAGTATCTGAGACTTCATGTTTAC 58.312 37.037 10.54 0.00 31.68 2.01
1728 1984 7.565450 TCATGTTTACGCTTGATTTGAATTG 57.435 32.000 0.00 0.00 0.00 2.32
1754 2010 4.709397 GGATGTTGATTTGTGGGTATTGGA 59.291 41.667 0.00 0.00 0.00 3.53
1843 2380 7.861629 ACAGACCTTACCAATCAATTAGATGA 58.138 34.615 0.00 0.00 36.96 2.92
1847 2384 5.180117 CCTTACCAATCAATTAGATGAGCCG 59.820 44.000 0.00 0.00 36.96 5.52
1848 2385 4.422073 ACCAATCAATTAGATGAGCCGA 57.578 40.909 0.00 0.00 36.96 5.54
1849 2386 4.780815 ACCAATCAATTAGATGAGCCGAA 58.219 39.130 0.00 0.00 36.96 4.30
2006 2579 6.293407 GCGTGCTGGTGACATATATAATTTGT 60.293 38.462 0.00 0.00 41.51 2.83
2042 2615 2.006888 CTTAAATGAAAGCGGCGAGGA 58.993 47.619 12.98 0.00 0.00 3.71
2118 2692 4.574013 CAGTATCTTGCTCCCTGTTTCATC 59.426 45.833 0.00 0.00 0.00 2.92
2180 2754 6.646240 TGGAAAGCAGAAAAGATTAATTGCAC 59.354 34.615 9.55 2.30 34.17 4.57
2199 2773 5.232180 GCACCTTGCATTGCTTGGATACA 62.232 47.826 21.27 0.00 45.32 2.29
2200 2774 6.474263 GCACCTTGCATTGCTTGGATACAT 62.474 45.833 21.27 2.46 45.99 2.29
2243 2818 5.278907 CCACAAACACAATCCAAGCATCTTA 60.279 40.000 0.00 0.00 0.00 2.10
2441 3022 2.038952 ACAATTGGCTGTAGCACTCTCA 59.961 45.455 10.83 0.00 44.36 3.27
2447 3028 2.354103 GGCTGTAGCACTCTCATTGACA 60.354 50.000 6.18 0.00 44.36 3.58
2616 3200 1.000521 CTGGCATGTCCACCCACAT 60.001 57.895 4.93 0.00 40.72 3.21
3168 3843 1.122019 AAGAAGCCCACCGTCTCTGT 61.122 55.000 0.00 0.00 30.68 3.41
3183 3858 3.599285 CTGTGGCCGCCTTTACCGA 62.599 63.158 15.15 0.00 0.00 4.69
3189 3864 1.520787 CCGCCTTTACCGAAGCGAT 60.521 57.895 4.61 0.00 37.19 4.58
3684 4409 2.386661 TCAAAGACCAGGCTCGAATC 57.613 50.000 0.00 0.00 0.00 2.52
3685 4410 1.623311 TCAAAGACCAGGCTCGAATCA 59.377 47.619 0.00 0.00 0.00 2.57
3686 4411 2.237143 TCAAAGACCAGGCTCGAATCAT 59.763 45.455 0.00 0.00 0.00 2.45
3687 4412 2.611225 AAGACCAGGCTCGAATCATC 57.389 50.000 0.00 0.00 0.00 2.92
3712 4437 7.223971 TCGAATGGTAATTTCACTATTTCGAGG 59.776 37.037 10.68 0.00 30.64 4.63
3726 4451 7.169982 CACTATTTCGAGGTAGCCAAATAAGAG 59.830 40.741 6.18 0.00 0.00 2.85
3757 4484 0.253327 AAGGCCTTAAGAAGAGCGGG 59.747 55.000 18.87 0.00 0.00 6.13
3786 4565 1.078759 GTACTGCCGCTGTGCTGTAG 61.079 60.000 12.77 0.00 43.43 2.74
3795 4587 4.558898 GCCGCTGTGCTGTAGTACTATATT 60.559 45.833 5.75 0.00 0.00 1.28
3799 4591 7.016466 CGCTGTGCTGTAGTACTATATTCTAC 58.984 42.308 5.75 2.61 35.86 2.59
3800 4592 7.095144 CGCTGTGCTGTAGTACTATATTCTACT 60.095 40.741 5.75 0.00 36.16 2.57
3801 4593 8.231837 GCTGTGCTGTAGTACTATATTCTACTC 58.768 40.741 5.75 0.00 36.16 2.59
3802 4594 8.618702 TGTGCTGTAGTACTATATTCTACTCC 57.381 38.462 5.75 0.00 36.16 3.85
3803 4595 7.664731 TGTGCTGTAGTACTATATTCTACTCCC 59.335 40.741 5.75 0.00 36.16 4.30
3804 4596 7.884354 GTGCTGTAGTACTATATTCTACTCCCT 59.116 40.741 5.75 0.00 36.16 4.20
3805 4597 8.102047 TGCTGTAGTACTATATTCTACTCCCTC 58.898 40.741 5.75 0.00 36.16 4.30
3806 4598 7.553760 GCTGTAGTACTATATTCTACTCCCTCC 59.446 44.444 5.75 0.00 36.16 4.30
3807 4599 7.619050 TGTAGTACTATATTCTACTCCCTCCG 58.381 42.308 5.75 0.00 36.16 4.63
3808 4600 6.700845 AGTACTATATTCTACTCCCTCCGT 57.299 41.667 0.00 0.00 0.00 4.69
3809 4601 7.089106 AGTACTATATTCTACTCCCTCCGTT 57.911 40.000 0.00 0.00 0.00 4.44
3810 4602 7.167535 AGTACTATATTCTACTCCCTCCGTTC 58.832 42.308 0.00 0.00 0.00 3.95
3811 4603 5.323581 ACTATATTCTACTCCCTCCGTTCC 58.676 45.833 0.00 0.00 0.00 3.62
3812 4604 2.850695 ATTCTACTCCCTCCGTTCCT 57.149 50.000 0.00 0.00 0.00 3.36
3813 4605 3.967467 ATTCTACTCCCTCCGTTCCTA 57.033 47.619 0.00 0.00 0.00 2.94
3814 4606 3.744940 TTCTACTCCCTCCGTTCCTAA 57.255 47.619 0.00 0.00 0.00 2.69
3815 4607 3.744940 TCTACTCCCTCCGTTCCTAAA 57.255 47.619 0.00 0.00 0.00 1.85
3816 4608 4.261411 TCTACTCCCTCCGTTCCTAAAT 57.739 45.455 0.00 0.00 0.00 1.40
3817 4609 5.393068 TCTACTCCCTCCGTTCCTAAATA 57.607 43.478 0.00 0.00 0.00 1.40
3818 4610 5.961897 TCTACTCCCTCCGTTCCTAAATAT 58.038 41.667 0.00 0.00 0.00 1.28
3819 4611 6.379579 TCTACTCCCTCCGTTCCTAAATATT 58.620 40.000 0.00 0.00 0.00 1.28
3820 4612 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
3821 4613 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
3822 4614 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
3823 4615 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
3824 4616 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
3825 4617 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
3826 4618 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
3827 4619 7.201705 CCCTCCGTTCCTAAATATTTGTCTTTC 60.202 40.741 11.05 0.00 0.00 2.62
3828 4620 7.553044 CCTCCGTTCCTAAATATTTGTCTTTCT 59.447 37.037 11.05 0.00 0.00 2.52
3829 4621 9.595823 CTCCGTTCCTAAATATTTGTCTTTCTA 57.404 33.333 11.05 0.00 0.00 2.10
3830 4622 9.595823 TCCGTTCCTAAATATTTGTCTTTCTAG 57.404 33.333 11.05 0.00 0.00 2.43
3831 4623 9.595823 CCGTTCCTAAATATTTGTCTTTCTAGA 57.404 33.333 11.05 0.00 0.00 2.43
3846 4638 9.996554 TGTCTTTCTAGATATTTCAACAAGTGA 57.003 29.630 0.00 0.00 31.86 3.41
3855 4647 9.302345 AGATATTTCAACAAGTGACTACATACG 57.698 33.333 0.00 0.00 35.39 3.06
3856 4648 6.721571 ATTTCAACAAGTGACTACATACGG 57.278 37.500 0.00 0.00 35.39 4.02
3857 4649 5.456548 TTCAACAAGTGACTACATACGGA 57.543 39.130 0.00 0.00 35.39 4.69
3858 4650 5.055642 TCAACAAGTGACTACATACGGAG 57.944 43.478 0.00 0.00 0.00 4.63
3859 4651 3.505464 ACAAGTGACTACATACGGAGC 57.495 47.619 0.00 0.00 0.00 4.70
3860 4652 2.823747 ACAAGTGACTACATACGGAGCA 59.176 45.455 0.00 0.00 0.00 4.26
3861 4653 3.257375 ACAAGTGACTACATACGGAGCAA 59.743 43.478 0.00 0.00 0.00 3.91
3862 4654 4.242475 CAAGTGACTACATACGGAGCAAA 58.758 43.478 0.00 0.00 0.00 3.68
3863 4655 4.530710 AGTGACTACATACGGAGCAAAA 57.469 40.909 0.00 0.00 0.00 2.44
3864 4656 4.243270 AGTGACTACATACGGAGCAAAAC 58.757 43.478 0.00 0.00 0.00 2.43
3865 4657 3.991773 GTGACTACATACGGAGCAAAACA 59.008 43.478 0.00 0.00 0.00 2.83
3866 4658 4.449743 GTGACTACATACGGAGCAAAACAA 59.550 41.667 0.00 0.00 0.00 2.83
3867 4659 4.688879 TGACTACATACGGAGCAAAACAAG 59.311 41.667 0.00 0.00 0.00 3.16
3868 4660 4.638304 ACTACATACGGAGCAAAACAAGT 58.362 39.130 0.00 0.00 0.00 3.16
3869 4661 3.896648 ACATACGGAGCAAAACAAGTG 57.103 42.857 0.00 0.00 0.00 3.16
3870 4662 3.472652 ACATACGGAGCAAAACAAGTGA 58.527 40.909 0.00 0.00 0.00 3.41
3871 4663 3.880490 ACATACGGAGCAAAACAAGTGAA 59.120 39.130 0.00 0.00 0.00 3.18
3872 4664 4.518970 ACATACGGAGCAAAACAAGTGAAT 59.481 37.500 0.00 0.00 0.00 2.57
3873 4665 3.626028 ACGGAGCAAAACAAGTGAATC 57.374 42.857 0.00 0.00 0.00 2.52
3874 4666 3.214328 ACGGAGCAAAACAAGTGAATCT 58.786 40.909 0.00 0.00 0.00 2.40
3875 4667 4.385825 ACGGAGCAAAACAAGTGAATCTA 58.614 39.130 0.00 0.00 0.00 1.98
3876 4668 4.213482 ACGGAGCAAAACAAGTGAATCTAC 59.787 41.667 0.00 0.00 0.00 2.59
3877 4669 4.213270 CGGAGCAAAACAAGTGAATCTACA 59.787 41.667 0.00 0.00 0.00 2.74
3878 4670 5.452777 GGAGCAAAACAAGTGAATCTACAC 58.547 41.667 0.00 0.00 40.60 2.90
3892 4684 8.976353 AGTGAATCTACACTCTAAATGATGTCT 58.024 33.333 0.00 0.00 46.36 3.41
3914 4706 9.511272 TGTCTATATACATCCGTATGTGTTAGT 57.489 33.333 3.56 0.00 45.99 2.24
3915 4707 9.985318 GTCTATATACATCCGTATGTGTTAGTC 57.015 37.037 3.56 0.00 45.99 2.59
3916 4708 9.729281 TCTATATACATCCGTATGTGTTAGTCA 57.271 33.333 3.56 0.00 45.99 3.41
3920 4712 8.958119 ATACATCCGTATGTGTTAGTCAATTT 57.042 30.769 3.56 0.00 45.99 1.82
3921 4713 7.072177 ACATCCGTATGTGTTAGTCAATTTG 57.928 36.000 0.00 0.00 44.79 2.32
3922 4714 6.876789 ACATCCGTATGTGTTAGTCAATTTGA 59.123 34.615 0.00 0.00 44.79 2.69
3923 4715 7.552687 ACATCCGTATGTGTTAGTCAATTTGAT 59.447 33.333 1.78 0.00 44.79 2.57
3924 4716 9.040939 CATCCGTATGTGTTAGTCAATTTGATA 57.959 33.333 1.78 0.00 0.00 2.15
3925 4717 9.607988 ATCCGTATGTGTTAGTCAATTTGATAA 57.392 29.630 1.78 0.78 0.00 1.75
3926 4718 8.875803 TCCGTATGTGTTAGTCAATTTGATAAC 58.124 33.333 16.50 16.50 0.00 1.89
3927 4719 8.879759 CCGTATGTGTTAGTCAATTTGATAACT 58.120 33.333 20.19 11.22 29.75 2.24
3928 4720 9.901724 CGTATGTGTTAGTCAATTTGATAACTC 57.098 33.333 20.19 18.30 29.75 3.01
3956 4748 8.422566 AGAAAGACTTATATTTAGGAACGGAGG 58.577 37.037 0.00 0.00 0.00 4.30
3957 4749 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
3958 4750 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
3959 4751 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
3960 4752 6.141790 ACTTATATTTAGGAACGGAGGGAGT 58.858 40.000 0.00 0.00 0.00 3.85
3961 4753 7.300658 ACTTATATTTAGGAACGGAGGGAGTA 58.699 38.462 0.00 0.00 0.00 2.59
3980 4772 5.475564 GGAGTAGGAGTCTAGGACAATGATC 59.524 48.000 0.52 0.00 34.60 2.92
4071 4863 9.565213 GCATAATGCAATTCTTGAATATACTCC 57.435 33.333 0.00 0.00 44.26 3.85
4074 4866 7.992754 ATGCAATTCTTGAATATACTCCCTC 57.007 36.000 0.00 0.00 0.00 4.30
4075 4867 6.299141 TGCAATTCTTGAATATACTCCCTCC 58.701 40.000 0.00 0.00 0.00 4.30
4076 4868 5.409826 GCAATTCTTGAATATACTCCCTCCG 59.590 44.000 0.00 0.00 0.00 4.63
4077 4869 6.525629 CAATTCTTGAATATACTCCCTCCGT 58.474 40.000 0.00 0.00 0.00 4.69
4078 4870 6.749036 ATTCTTGAATATACTCCCTCCGTT 57.251 37.500 0.00 0.00 0.00 4.44
4079 4871 5.786264 TCTTGAATATACTCCCTCCGTTC 57.214 43.478 0.00 0.00 0.00 3.95
4080 4872 4.587684 TCTTGAATATACTCCCTCCGTTCC 59.412 45.833 0.00 0.00 0.00 3.62
4081 4873 4.194678 TGAATATACTCCCTCCGTTCCT 57.805 45.455 0.00 0.00 0.00 3.36
4082 4874 5.329191 TGAATATACTCCCTCCGTTCCTA 57.671 43.478 0.00 0.00 0.00 2.94
4083 4875 5.708544 TGAATATACTCCCTCCGTTCCTAA 58.291 41.667 0.00 0.00 0.00 2.69
4084 4876 6.138263 TGAATATACTCCCTCCGTTCCTAAA 58.862 40.000 0.00 0.00 0.00 1.85
4085 4877 6.785963 TGAATATACTCCCTCCGTTCCTAAAT 59.214 38.462 0.00 0.00 0.00 1.40
4086 4878 4.957684 ATACTCCCTCCGTTCCTAAATG 57.042 45.455 0.00 0.00 0.00 2.32
4087 4879 2.547990 ACTCCCTCCGTTCCTAAATGT 58.452 47.619 0.00 0.00 0.00 2.71
4088 4880 3.716431 ACTCCCTCCGTTCCTAAATGTA 58.284 45.455 0.00 0.00 0.00 2.29
4089 4881 4.098894 ACTCCCTCCGTTCCTAAATGTAA 58.901 43.478 0.00 0.00 0.00 2.41
4090 4882 4.161754 ACTCCCTCCGTTCCTAAATGTAAG 59.838 45.833 0.00 0.00 0.00 2.34
4091 4883 4.098894 TCCCTCCGTTCCTAAATGTAAGT 58.901 43.478 0.00 0.00 0.00 2.24
4092 4884 4.161001 TCCCTCCGTTCCTAAATGTAAGTC 59.839 45.833 0.00 0.00 0.00 3.01
4093 4885 4.161754 CCCTCCGTTCCTAAATGTAAGTCT 59.838 45.833 0.00 0.00 0.00 3.24
4094 4886 5.338137 CCCTCCGTTCCTAAATGTAAGTCTT 60.338 44.000 0.00 0.00 0.00 3.01
4095 4887 6.171213 CCTCCGTTCCTAAATGTAAGTCTTT 58.829 40.000 0.00 0.00 0.00 2.52
4096 4888 6.092259 CCTCCGTTCCTAAATGTAAGTCTTTG 59.908 42.308 0.00 0.00 0.00 2.77
4097 4889 6.527423 TCCGTTCCTAAATGTAAGTCTTTGT 58.473 36.000 0.00 0.00 0.00 2.83
4098 4890 7.669427 TCCGTTCCTAAATGTAAGTCTTTGTA 58.331 34.615 0.00 0.00 0.00 2.41
4099 4891 7.816031 TCCGTTCCTAAATGTAAGTCTTTGTAG 59.184 37.037 0.00 0.00 0.00 2.74
4100 4892 7.816031 CCGTTCCTAAATGTAAGTCTTTGTAGA 59.184 37.037 0.00 0.00 0.00 2.59
4101 4893 8.861101 CGTTCCTAAATGTAAGTCTTTGTAGAG 58.139 37.037 0.00 0.00 0.00 2.43
4102 4894 9.924650 GTTCCTAAATGTAAGTCTTTGTAGAGA 57.075 33.333 0.00 0.00 0.00 3.10
4108 4900 9.965902 AAATGTAAGTCTTTGTAGAGATTCCAT 57.034 29.630 0.00 0.00 0.00 3.41
4109 4901 9.965902 AATGTAAGTCTTTGTAGAGATTCCATT 57.034 29.630 0.00 0.00 0.00 3.16
4117 4909 9.542462 TCTTTGTAGAGATTCCATTATAAACCG 57.458 33.333 0.00 0.00 0.00 4.44
4118 4910 7.724305 TTGTAGAGATTCCATTATAAACCGC 57.276 36.000 0.00 0.00 0.00 5.68
4119 4911 6.822442 TGTAGAGATTCCATTATAAACCGCA 58.178 36.000 0.00 0.00 0.00 5.69
4120 4912 6.704493 TGTAGAGATTCCATTATAAACCGCAC 59.296 38.462 0.00 0.00 0.00 5.34
4121 4913 5.680619 AGAGATTCCATTATAAACCGCACA 58.319 37.500 0.00 0.00 0.00 4.57
4122 4914 5.527582 AGAGATTCCATTATAAACCGCACAC 59.472 40.000 0.00 0.00 0.00 3.82
4123 4915 4.272504 AGATTCCATTATAAACCGCACACG 59.727 41.667 0.00 0.00 39.67 4.49
4138 4930 3.547868 CGCACACGGATGTATATAGATGC 59.452 47.826 0.00 0.00 36.72 3.91
4139 4931 4.494484 GCACACGGATGTATATAGATGCA 58.506 43.478 11.19 0.00 36.72 3.96
4140 4932 5.111989 GCACACGGATGTATATAGATGCAT 58.888 41.667 11.19 0.00 40.68 3.96
4141 4933 5.582269 GCACACGGATGTATATAGATGCATT 59.418 40.000 11.19 0.00 38.38 3.56
4142 4934 6.092670 GCACACGGATGTATATAGATGCATTT 59.907 38.462 11.19 0.00 38.38 2.32
4143 4935 7.361201 GCACACGGATGTATATAGATGCATTTT 60.361 37.037 11.19 0.00 38.38 1.82
4144 4936 9.150348 CACACGGATGTATATAGATGCATTTTA 57.850 33.333 11.19 0.00 38.38 1.52
4145 4937 9.719355 ACACGGATGTATATAGATGCATTTTAA 57.281 29.630 11.19 0.00 38.38 1.52
4147 4939 9.944376 ACGGATGTATATAGATGCATTTTAAGT 57.056 29.630 11.19 0.00 38.38 2.24
4169 4961 8.992835 AAGTTTAGATTCATTCATTTTGCTCC 57.007 30.769 0.00 0.00 0.00 4.70
4170 4962 7.253422 AGTTTAGATTCATTCATTTTGCTCCG 58.747 34.615 0.00 0.00 0.00 4.63
4171 4963 6.757897 TTAGATTCATTCATTTTGCTCCGT 57.242 33.333 0.00 0.00 0.00 4.69
4172 4964 7.857734 TTAGATTCATTCATTTTGCTCCGTA 57.142 32.000 0.00 0.00 0.00 4.02
4173 4965 6.949352 AGATTCATTCATTTTGCTCCGTAT 57.051 33.333 0.00 0.00 0.00 3.06
4174 4966 6.732154 AGATTCATTCATTTTGCTCCGTATG 58.268 36.000 0.00 0.00 0.00 2.39
4175 4967 5.895636 TTCATTCATTTTGCTCCGTATGT 57.104 34.783 0.00 0.00 0.00 2.29
4176 4968 6.993786 TTCATTCATTTTGCTCCGTATGTA 57.006 33.333 0.00 0.00 0.00 2.29
4177 4969 6.603237 TCATTCATTTTGCTCCGTATGTAG 57.397 37.500 0.00 0.00 0.00 2.74
4178 4970 6.112734 TCATTCATTTTGCTCCGTATGTAGT 58.887 36.000 0.00 0.00 0.00 2.73
4179 4971 6.257849 TCATTCATTTTGCTCCGTATGTAGTC 59.742 38.462 0.00 0.00 0.00 2.59
4180 4972 4.439057 TCATTTTGCTCCGTATGTAGTCC 58.561 43.478 0.00 0.00 0.00 3.85
4181 4973 3.965379 TTTTGCTCCGTATGTAGTCCA 57.035 42.857 0.00 0.00 0.00 4.02
4182 4974 2.953466 TTGCTCCGTATGTAGTCCAC 57.047 50.000 0.00 0.00 0.00 4.02
4183 4975 1.108776 TGCTCCGTATGTAGTCCACC 58.891 55.000 0.00 0.00 0.00 4.61
4184 4976 1.341679 TGCTCCGTATGTAGTCCACCT 60.342 52.381 0.00 0.00 0.00 4.00
4185 4977 2.092267 TGCTCCGTATGTAGTCCACCTA 60.092 50.000 0.00 0.00 0.00 3.08
4186 4978 2.553172 GCTCCGTATGTAGTCCACCTAG 59.447 54.545 0.00 0.00 0.00 3.02
4187 4979 3.818180 CTCCGTATGTAGTCCACCTAGT 58.182 50.000 0.00 0.00 0.00 2.57
4188 4980 3.548770 TCCGTATGTAGTCCACCTAGTG 58.451 50.000 0.00 0.00 0.00 2.74
4203 4995 6.531503 CACCTAGTGGAATCTCTACAAAGA 57.468 41.667 0.00 0.00 37.04 2.52
4204 4996 6.334202 CACCTAGTGGAATCTCTACAAAGAC 58.666 44.000 0.00 0.00 37.04 3.01
4205 4997 6.153680 CACCTAGTGGAATCTCTACAAAGACT 59.846 42.308 0.00 0.00 37.04 3.24
4206 4998 6.726764 ACCTAGTGGAATCTCTACAAAGACTT 59.273 38.462 0.00 0.00 37.04 3.01
4207 4999 7.894364 ACCTAGTGGAATCTCTACAAAGACTTA 59.106 37.037 0.00 0.00 37.04 2.24
4208 5000 8.919145 CCTAGTGGAATCTCTACAAAGACTTAT 58.081 37.037 0.00 0.00 34.57 1.73
4222 5014 8.943909 ACAAAGACTTATATTTAGGAACGGAG 57.056 34.615 0.00 0.00 0.00 4.63
4223 5015 7.985752 ACAAAGACTTATATTTAGGAACGGAGG 59.014 37.037 0.00 0.00 0.00 4.30
4224 5016 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
4225 5017 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
4226 5018 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
4320 5121 1.474478 AGATGAGTAGCTGTCCACGTG 59.526 52.381 9.08 9.08 0.00 4.49
4531 5337 3.259123 GCAGGTTTGTCCCAAAATCTCAT 59.741 43.478 0.00 0.00 36.75 2.90
4546 5352 8.912988 CCAAAATCTCATAGGGCTTGTTATTTA 58.087 33.333 0.00 0.00 0.00 1.40
4593 5408 9.646427 TGTAAAATTTTCAGTTTGCTTACTTGT 57.354 25.926 6.72 0.00 0.00 3.16
4651 5550 7.653647 TGTTTGTTTGTTGTACTTGAGAACTT 58.346 30.769 0.00 0.00 32.50 2.66
4656 5555 5.092554 TGTTGTACTTGAGAACTTGGTGA 57.907 39.130 0.00 0.00 32.50 4.02
4672 5571 7.913674 ACTTGGTGAGATCTTAATTCAGAAC 57.086 36.000 0.00 0.00 0.00 3.01
4673 5572 7.684529 ACTTGGTGAGATCTTAATTCAGAACT 58.315 34.615 0.00 0.00 0.00 3.01
4674 5573 7.821846 ACTTGGTGAGATCTTAATTCAGAACTC 59.178 37.037 16.16 16.16 41.12 3.01
4675 5574 7.244886 TGGTGAGATCTTAATTCAGAACTCA 57.755 36.000 19.90 19.90 45.52 3.41
4696 5595 7.506114 ACTCAGAAGACCTGTTTTATGTGTTA 58.494 34.615 0.00 0.00 43.38 2.41
4700 5599 9.003658 CAGAAGACCTGTTTTATGTGTTATTCT 57.996 33.333 0.00 0.00 38.10 2.40
4701 5600 9.574516 AGAAGACCTGTTTTATGTGTTATTCTT 57.425 29.630 0.00 0.00 0.00 2.52
4704 5603 9.965824 AGACCTGTTTTATGTGTTATTCTTTTG 57.034 29.630 0.00 0.00 0.00 2.44
4705 5604 9.744468 GACCTGTTTTATGTGTTATTCTTTTGT 57.256 29.630 0.00 0.00 0.00 2.83
4745 5644 4.999950 GTCTCATGTTTCCACAATCAGTCT 59.000 41.667 0.00 0.00 36.16 3.24
4751 5650 7.502226 TCATGTTTCCACAATCAGTCTTTACTT 59.498 33.333 0.00 0.00 36.16 2.24
4779 5678 3.376859 TGTTTGATTCGTGACTTGCTTGT 59.623 39.130 0.00 0.00 0.00 3.16
4788 5687 4.394920 TCGTGACTTGCTTGTTCTTCTTTT 59.605 37.500 0.00 0.00 0.00 2.27
4789 5688 4.730521 CGTGACTTGCTTGTTCTTCTTTTC 59.269 41.667 0.00 0.00 0.00 2.29
4795 5695 9.468532 GACTTGCTTGTTCTTCTTTTCAAATAT 57.531 29.630 0.00 0.00 0.00 1.28
4882 5782 7.094075 TGGAGGATGATGCAAATATTAATGCTC 60.094 37.037 12.20 8.37 42.97 4.26
4934 5835 4.268405 CGCACAAAAGCTTGTTCTCATTTT 59.732 37.500 0.00 0.00 43.45 1.82
5101 6002 7.230849 TGCCTATCATCAGTTTCATGTTTTT 57.769 32.000 0.00 0.00 0.00 1.94
5177 6078 0.172803 GGCGTCACTCGAACAGGTAT 59.827 55.000 0.00 0.00 42.86 2.73
5275 6182 7.522901 TCATTGGTTTATCATCGCAAATTTG 57.477 32.000 14.03 14.03 0.00 2.32
5288 6195 8.649841 TCATCGCAAATTTGAAATGAAAATCTC 58.350 29.630 22.31 0.00 31.83 2.75
5329 6236 1.131883 GACAGCTGCTTGCATGGTTAG 59.868 52.381 15.27 0.00 45.94 2.34
5349 6256 8.682710 TGGTTAGCTTCCATATGTTTAAATGTC 58.317 33.333 1.24 0.00 0.00 3.06
5496 6403 6.183360 CCTCTCAATTCATTGTCCACAGAATC 60.183 42.308 0.00 0.00 38.84 2.52
5509 6416 5.067413 GTCCACAGAATCGTCTACCAGATTA 59.933 44.000 0.00 0.00 37.23 1.75
5512 6419 6.262496 CCACAGAATCGTCTACCAGATTACTA 59.738 42.308 0.00 0.00 37.23 1.82
5688 6605 9.214957 TGTGTATGTAATTTCCTGTTTCTACTG 57.785 33.333 0.00 0.00 0.00 2.74
5691 6612 3.831715 AATTTCCTGTTTCTACTGCGC 57.168 42.857 0.00 0.00 0.00 6.09
5702 6623 2.962125 TCTACTGCGCGTTTTCCATTA 58.038 42.857 8.43 0.00 0.00 1.90
5750 6676 1.808411 TTGGGCTGTTGAGAATCGTC 58.192 50.000 0.00 0.00 38.61 4.20
5751 6677 0.684535 TGGGCTGTTGAGAATCGTCA 59.315 50.000 0.00 0.00 38.61 4.35
5762 6688 6.420903 TGTTGAGAATCGTCAAGAGTTTGTAG 59.579 38.462 0.00 0.00 37.12 2.74
5873 6799 2.434359 GGGTTCGGCACCTCTTCG 60.434 66.667 0.00 0.00 46.38 3.79
5891 6817 6.147821 CCTCTTCGAAGAAGTGAAAATTGCTA 59.852 38.462 26.87 0.93 45.90 3.49
5931 6857 0.106769 TTGGTCTGTGGCTGCTGAAA 60.107 50.000 0.00 0.00 0.00 2.69
5971 6897 1.055040 ACCTGGATCTCAGCATAGGC 58.945 55.000 0.00 0.00 42.05 3.93
5987 6913 0.908656 AGGCCAGACACAGCTCTGAT 60.909 55.000 5.01 0.00 40.28 2.90
5988 6914 0.743701 GGCCAGACACAGCTCTGATG 60.744 60.000 0.00 1.60 40.28 3.07
5989 6915 1.367599 GCCAGACACAGCTCTGATGC 61.368 60.000 3.60 0.00 40.28 3.91
5990 6916 0.036671 CCAGACACAGCTCTGATGCA 60.037 55.000 3.60 0.00 40.28 3.96
5991 6917 1.360820 CAGACACAGCTCTGATGCAG 58.639 55.000 3.60 0.00 40.28 4.41
5992 6918 1.067071 CAGACACAGCTCTGATGCAGA 60.067 52.381 3.60 0.00 40.28 4.26
6035 6973 1.035139 CTGGAGCCTTGTTTGCAACT 58.965 50.000 0.00 0.00 0.00 3.16
6069 7008 2.984471 TGTCAGCGAAACGATACTTGAC 59.016 45.455 0.00 0.00 0.00 3.18
6102 7041 2.560981 TCAGCTTCTGTAATCGGTGACA 59.439 45.455 0.00 0.00 32.61 3.58
6148 7087 7.845066 TCATCTTTGAGAAATGAGATGACTG 57.155 36.000 10.01 0.00 45.63 3.51
6165 7104 3.947834 TGACTGATTCGTCTAGATGCTGA 59.052 43.478 7.11 0.00 35.00 4.26
6209 7166 1.060122 ACTAATTCGTTTACGCGCTGC 59.940 47.619 5.73 0.00 39.60 5.25
6215 7173 2.074920 GTTTACGCGCTGCTGTTGC 61.075 57.895 5.73 0.00 40.20 4.17
6334 7304 7.649973 ACGACATAAGTTAGGAGTAGCATAAG 58.350 38.462 0.75 0.00 0.00 1.73
6394 7405 5.712152 ATTTTCTTTCAGCTGGAATTCGT 57.288 34.783 15.13 0.00 34.91 3.85
6441 7567 5.337169 GGAGCCACTGGATTGTAGATAGATC 60.337 48.000 0.00 0.00 0.00 2.75
6509 7636 9.877178 ATTTTACAGAAAACTCATATCTCTCGT 57.123 29.630 0.00 0.00 37.37 4.18
6516 7643 4.294416 ACTCATATCTCTCGTTTGACCG 57.706 45.455 0.00 0.00 0.00 4.79
6522 7649 1.284982 CTCTCGTTTGACCGGTGCTG 61.285 60.000 14.63 0.00 0.00 4.41
6525 7652 0.319211 TCGTTTGACCGGTGCTGTAG 60.319 55.000 14.63 0.00 0.00 2.74
6535 7688 1.471676 CGGTGCTGTAGGCTTAGGAAG 60.472 57.143 0.00 0.00 42.39 3.46
6677 7833 7.202195 CCTTATATGGTTTCCCCTATATAGGCC 60.202 44.444 21.75 16.88 42.26 5.19
6758 8058 2.997980 TCTGCACTTGTTCAAACCTCA 58.002 42.857 0.00 0.00 0.00 3.86
6873 8198 7.253302 GCAATCTTGCGTTTTTCTTTAGTAG 57.747 36.000 0.00 0.00 45.11 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 3.054802 CCCTCTCAGACCATTAGTGCTTT 60.055 47.826 0.00 0.00 0.00 3.51
2 3 2.503356 CCCTCTCAGACCATTAGTGCTT 59.497 50.000 0.00 0.00 0.00 3.91
5 6 2.114616 AGCCCTCTCAGACCATTAGTG 58.885 52.381 0.00 0.00 0.00 2.74
6 7 2.114616 CAGCCCTCTCAGACCATTAGT 58.885 52.381 0.00 0.00 0.00 2.24
7 8 1.415659 CCAGCCCTCTCAGACCATTAG 59.584 57.143 0.00 0.00 0.00 1.73
8 9 1.008327 TCCAGCCCTCTCAGACCATTA 59.992 52.381 0.00 0.00 0.00 1.90
9 10 0.252881 TCCAGCCCTCTCAGACCATT 60.253 55.000 0.00 0.00 0.00 3.16
10 11 0.252881 TTCCAGCCCTCTCAGACCAT 60.253 55.000 0.00 0.00 0.00 3.55
11 12 0.252881 ATTCCAGCCCTCTCAGACCA 60.253 55.000 0.00 0.00 0.00 4.02
12 13 1.691434 CTATTCCAGCCCTCTCAGACC 59.309 57.143 0.00 0.00 0.00 3.85
13 14 2.102252 CACTATTCCAGCCCTCTCAGAC 59.898 54.545 0.00 0.00 0.00 3.51
14 15 2.392662 CACTATTCCAGCCCTCTCAGA 58.607 52.381 0.00 0.00 0.00 3.27
15 16 1.202627 GCACTATTCCAGCCCTCTCAG 60.203 57.143 0.00 0.00 0.00 3.35
16 17 0.833287 GCACTATTCCAGCCCTCTCA 59.167 55.000 0.00 0.00 0.00 3.27
17 18 1.069978 GAGCACTATTCCAGCCCTCTC 59.930 57.143 0.00 0.00 0.00 3.20
18 19 1.127343 GAGCACTATTCCAGCCCTCT 58.873 55.000 0.00 0.00 0.00 3.69
19 20 0.833287 TGAGCACTATTCCAGCCCTC 59.167 55.000 0.00 0.00 0.00 4.30
20 21 0.835941 CTGAGCACTATTCCAGCCCT 59.164 55.000 0.00 0.00 0.00 5.19
21 22 0.543749 ACTGAGCACTATTCCAGCCC 59.456 55.000 0.00 0.00 0.00 5.19
22 23 2.409948 AACTGAGCACTATTCCAGCC 57.590 50.000 0.00 0.00 0.00 4.85
23 24 5.880054 TTAAAACTGAGCACTATTCCAGC 57.120 39.130 0.00 0.00 0.00 4.85
24 25 7.383102 ACATTAAAACTGAGCACTATTCCAG 57.617 36.000 0.00 0.00 0.00 3.86
25 26 9.109393 GATACATTAAAACTGAGCACTATTCCA 57.891 33.333 0.00 0.00 0.00 3.53
26 27 9.331282 AGATACATTAAAACTGAGCACTATTCC 57.669 33.333 0.00 0.00 0.00 3.01
54 55 9.587772 GGATAGAGCGTGTGTATCATTTATTAT 57.412 33.333 6.47 0.00 33.80 1.28
55 56 8.803235 AGGATAGAGCGTGTGTATCATTTATTA 58.197 33.333 6.47 0.00 33.80 0.98
56 57 7.671302 AGGATAGAGCGTGTGTATCATTTATT 58.329 34.615 6.47 0.00 33.80 1.40
57 58 7.039714 TGAGGATAGAGCGTGTGTATCATTTAT 60.040 37.037 6.47 0.00 33.80 1.40
58 59 6.264518 TGAGGATAGAGCGTGTGTATCATTTA 59.735 38.462 6.47 0.00 33.80 1.40
59 60 5.069119 TGAGGATAGAGCGTGTGTATCATTT 59.931 40.000 6.47 0.00 33.80 2.32
60 61 4.584743 TGAGGATAGAGCGTGTGTATCATT 59.415 41.667 6.47 0.00 33.80 2.57
61 62 4.145052 TGAGGATAGAGCGTGTGTATCAT 58.855 43.478 6.47 0.42 33.80 2.45
62 63 3.551846 TGAGGATAGAGCGTGTGTATCA 58.448 45.455 6.47 0.00 33.80 2.15
63 64 4.569761 TTGAGGATAGAGCGTGTGTATC 57.430 45.455 0.00 0.00 31.76 2.24
64 65 5.537300 ATTTGAGGATAGAGCGTGTGTAT 57.463 39.130 0.00 0.00 0.00 2.29
65 66 5.339008 AATTTGAGGATAGAGCGTGTGTA 57.661 39.130 0.00 0.00 0.00 2.90
66 67 3.895232 ATTTGAGGATAGAGCGTGTGT 57.105 42.857 0.00 0.00 0.00 3.72
67 68 5.551760 AAAATTTGAGGATAGAGCGTGTG 57.448 39.130 0.00 0.00 0.00 3.82
112 113 5.044558 CGGTAAGTAGCCAAGAGAAATCTC 58.955 45.833 2.10 2.10 43.17 2.75
113 114 4.680975 GCGGTAAGTAGCCAAGAGAAATCT 60.681 45.833 0.00 0.00 0.00 2.40
114 115 3.556365 GCGGTAAGTAGCCAAGAGAAATC 59.444 47.826 0.00 0.00 0.00 2.17
115 116 3.532542 GCGGTAAGTAGCCAAGAGAAAT 58.467 45.455 0.00 0.00 0.00 2.17
116 117 2.968675 GCGGTAAGTAGCCAAGAGAAA 58.031 47.619 0.00 0.00 0.00 2.52
117 118 2.667473 GCGGTAAGTAGCCAAGAGAA 57.333 50.000 0.00 0.00 0.00 2.87
125 126 1.104630 ACTCTGAGGCGGTAAGTAGC 58.895 55.000 9.85 0.00 0.00 3.58
126 127 3.192844 TCAAACTCTGAGGCGGTAAGTAG 59.807 47.826 9.85 0.00 0.00 2.57
127 128 3.159472 TCAAACTCTGAGGCGGTAAGTA 58.841 45.455 9.85 0.00 0.00 2.24
128 129 1.968493 TCAAACTCTGAGGCGGTAAGT 59.032 47.619 9.85 0.00 0.00 2.24
129 130 2.743636 TCAAACTCTGAGGCGGTAAG 57.256 50.000 9.85 0.00 0.00 2.34
130 131 3.007506 TCAATCAAACTCTGAGGCGGTAA 59.992 43.478 9.85 0.00 37.52 2.85
131 132 2.565391 TCAATCAAACTCTGAGGCGGTA 59.435 45.455 9.85 0.00 37.52 4.02
132 133 1.347707 TCAATCAAACTCTGAGGCGGT 59.652 47.619 9.85 0.00 37.52 5.68
133 134 2.005451 CTCAATCAAACTCTGAGGCGG 58.995 52.381 9.85 0.00 37.52 6.13
134 135 2.964740 TCTCAATCAAACTCTGAGGCG 58.035 47.619 9.85 0.00 37.52 5.52
135 136 5.456265 GTTTTCTCAATCAAACTCTGAGGC 58.544 41.667 9.85 0.00 37.52 4.70
136 137 5.532406 TGGTTTTCTCAATCAAACTCTGAGG 59.468 40.000 9.85 0.00 37.52 3.86
137 138 6.624352 TGGTTTTCTCAATCAAACTCTGAG 57.376 37.500 2.45 2.45 37.52 3.35
138 139 7.257722 GTTTGGTTTTCTCAATCAAACTCTGA 58.742 34.615 13.73 0.00 41.99 3.27
139 140 7.455331 GTTTGGTTTTCTCAATCAAACTCTG 57.545 36.000 13.73 0.00 41.99 3.35
143 144 6.019881 CCGAAGTTTGGTTTTCTCAATCAAAC 60.020 38.462 13.30 13.30 44.14 2.93
144 145 6.039616 CCGAAGTTTGGTTTTCTCAATCAAA 58.960 36.000 0.29 0.00 0.00 2.69
145 146 5.587289 CCGAAGTTTGGTTTTCTCAATCAA 58.413 37.500 0.29 0.00 0.00 2.57
146 147 4.499019 GCCGAAGTTTGGTTTTCTCAATCA 60.499 41.667 10.98 0.00 0.00 2.57
147 148 3.981416 GCCGAAGTTTGGTTTTCTCAATC 59.019 43.478 10.98 0.00 0.00 2.67
148 149 3.243737 GGCCGAAGTTTGGTTTTCTCAAT 60.244 43.478 10.98 0.00 0.00 2.57
149 150 2.100087 GGCCGAAGTTTGGTTTTCTCAA 59.900 45.455 10.98 0.00 0.00 3.02
150 151 1.679153 GGCCGAAGTTTGGTTTTCTCA 59.321 47.619 10.98 0.00 0.00 3.27
151 152 1.000607 GGGCCGAAGTTTGGTTTTCTC 60.001 52.381 10.98 0.00 0.00 2.87
152 153 1.037493 GGGCCGAAGTTTGGTTTTCT 58.963 50.000 10.98 0.00 0.00 2.52
153 154 0.747852 TGGGCCGAAGTTTGGTTTTC 59.252 50.000 10.98 0.00 0.00 2.29
154 155 0.750249 CTGGGCCGAAGTTTGGTTTT 59.250 50.000 10.98 0.00 0.00 2.43
155 156 1.744320 GCTGGGCCGAAGTTTGGTTT 61.744 55.000 10.98 0.00 0.00 3.27
156 157 2.200337 GCTGGGCCGAAGTTTGGTT 61.200 57.895 10.98 0.00 0.00 3.67
157 158 2.597510 GCTGGGCCGAAGTTTGGT 60.598 61.111 10.98 0.00 0.00 3.67
158 159 3.373565 GGCTGGGCCGAAGTTTGG 61.374 66.667 4.57 4.57 39.62 3.28
212 217 0.457035 TTACGGGTAAGCAGCGTAGG 59.543 55.000 0.00 0.00 0.00 3.18
215 220 0.604578 TCTTTACGGGTAAGCAGCGT 59.395 50.000 0.00 0.00 0.00 5.07
345 388 1.128692 GCGCTATTCGAAGTTGCAACT 59.871 47.619 26.36 26.36 41.67 3.16
346 389 1.128692 AGCGCTATTCGAAGTTGCAAC 59.871 47.619 22.17 22.17 41.67 4.17
356 399 2.511373 TGGTGGCAGCGCTATTCG 60.511 61.111 10.99 0.00 42.12 3.34
427 480 3.403558 GAGGTGGGTGGAGGGAGC 61.404 72.222 0.00 0.00 0.00 4.70
429 482 3.208592 AGGAGGTGGGTGGAGGGA 61.209 66.667 0.00 0.00 0.00 4.20
431 484 3.721706 GCAGGAGGTGGGTGGAGG 61.722 72.222 0.00 0.00 0.00 4.30
432 485 3.721706 GGCAGGAGGTGGGTGGAG 61.722 72.222 0.00 0.00 0.00 3.86
435 488 4.394712 GACGGCAGGAGGTGGGTG 62.395 72.222 0.00 0.00 0.00 4.61
436 489 4.954118 TGACGGCAGGAGGTGGGT 62.954 66.667 0.00 0.00 0.00 4.51
437 490 4.087892 CTGACGGCAGGAGGTGGG 62.088 72.222 11.57 0.00 38.51 4.61
438 491 2.303549 GATCTGACGGCAGGAGGTGG 62.304 65.000 20.50 0.00 42.53 4.61
439 492 1.142748 GATCTGACGGCAGGAGGTG 59.857 63.158 20.50 0.00 42.53 4.00
440 493 2.060980 GGATCTGACGGCAGGAGGT 61.061 63.158 20.50 1.84 42.53 3.85
479 539 1.598882 GAATCGAGGGAGAATTGGGC 58.401 55.000 0.00 0.00 0.00 5.36
493 553 0.249489 GGACACTGGGATCGGAATCG 60.249 60.000 0.00 0.00 32.24 3.34
494 554 1.069358 GAGGACACTGGGATCGGAATC 59.931 57.143 0.00 0.00 0.00 2.52
495 555 1.123928 GAGGACACTGGGATCGGAAT 58.876 55.000 0.00 0.00 0.00 3.01
496 556 0.252057 TGAGGACACTGGGATCGGAA 60.252 55.000 0.00 0.00 0.00 4.30
497 557 0.032117 ATGAGGACACTGGGATCGGA 60.032 55.000 0.00 0.00 0.00 4.55
498 558 1.704641 TATGAGGACACTGGGATCGG 58.295 55.000 0.00 0.00 0.00 4.18
499 559 4.310769 GAATTATGAGGACACTGGGATCG 58.689 47.826 0.00 0.00 0.00 3.69
500 560 4.310769 CGAATTATGAGGACACTGGGATC 58.689 47.826 0.00 0.00 0.00 3.36
501 561 3.495100 GCGAATTATGAGGACACTGGGAT 60.495 47.826 0.00 0.00 0.00 3.85
505 565 3.785486 TGAGCGAATTATGAGGACACTG 58.215 45.455 0.00 0.00 0.00 3.66
520 580 0.964700 CCTCTATCAGGCATGAGCGA 59.035 55.000 7.33 4.75 43.41 4.93
541 601 4.090090 ACATCGGAGGATAGATAACCCTG 58.910 47.826 0.00 0.00 0.00 4.45
618 792 9.047871 GTATTTTAGTATTGCAACGAAACTGAC 57.952 33.333 0.00 0.00 0.00 3.51
681 873 8.939586 AATCATACATCAAAATCGATAAAGCG 57.060 30.769 0.00 0.00 0.00 4.68
735 933 7.768240 TGCTTGACATAGAAAGAAGTATACGA 58.232 34.615 0.00 0.00 0.00 3.43
738 936 8.830580 GCATTGCTTGACATAGAAAGAAGTATA 58.169 33.333 0.16 0.00 0.00 1.47
758 956 2.177531 CCACAGCAGACGCATTGC 59.822 61.111 0.00 0.00 42.27 3.56
780 981 4.789784 TGAAAATTAACCAGCGCAGTAAC 58.210 39.130 11.47 0.00 0.00 2.50
900 1111 1.408422 GGAACGAATTGTTGCTGCAC 58.592 50.000 0.00 0.00 44.71 4.57
952 1166 5.991606 GCTGCTACCTACAAATCATCACATA 59.008 40.000 0.00 0.00 0.00 2.29
989 1203 1.002134 CCAGACATCTTGCCCCGTT 60.002 57.895 0.00 0.00 0.00 4.44
992 1206 2.825836 CGCCAGACATCTTGCCCC 60.826 66.667 0.00 0.00 31.59 5.80
1011 1225 5.520376 AAAAGTAGCAGCAACTCACATTT 57.480 34.783 0.00 0.00 0.00 2.32
1032 1246 8.784043 GGCTTCTCTACAGACAAAAAGAATTAA 58.216 33.333 0.00 0.00 0.00 1.40
1099 1321 0.461870 TGCAGGCTACGCACCATAAG 60.462 55.000 0.00 0.00 33.55 1.73
1121 1343 4.618927 TTCCTACGGAAAGTGTTATCCACG 60.619 45.833 0.00 0.00 41.92 4.94
1287 1515 2.959465 AACCAAGGGAGAAAGACAGG 57.041 50.000 0.00 0.00 0.00 4.00
1382 1610 9.903682 ATAATTCAGTATTGCATGAATAACAGC 57.096 29.630 12.43 0.00 43.56 4.40
1591 1821 3.805066 TGAGGAATCACACCCAATTGA 57.195 42.857 7.12 0.00 0.00 2.57
1622 1852 6.253727 GCGAGGCATTACAGATATACATACAC 59.746 42.308 0.00 0.00 0.00 2.90
1627 1857 3.254903 ACGCGAGGCATTACAGATATACA 59.745 43.478 15.93 0.00 0.00 2.29
1713 1943 4.925054 ACATCCAACAATTCAAATCAAGCG 59.075 37.500 0.00 0.00 0.00 4.68
1728 1984 5.659440 ATACCCACAAATCAACATCCAAC 57.341 39.130 0.00 0.00 0.00 3.77
1754 2010 7.408756 ACAATGCCATGACATACTAAAACAT 57.591 32.000 0.00 0.00 0.00 2.71
1843 2380 5.008019 CAGAAACTGCATATATTGTTCGGCT 59.992 40.000 0.00 0.00 0.00 5.52
2006 2579 6.480763 TCATTTAAGCAGGTTCATTACAGGA 58.519 36.000 0.00 0.00 0.00 3.86
2042 2615 3.326297 CAGGAAAAGTCAGGGAACTCTCT 59.674 47.826 0.00 0.00 40.21 3.10
2180 2754 5.717078 ATATGTATCCAAGCAATGCAAGG 57.283 39.130 8.35 8.90 0.00 3.61
2243 2818 6.185511 CCAATCATATCCATCCTAGCAATGT 58.814 40.000 0.00 0.00 0.00 2.71
2285 2860 4.034510 CCATCCGATCAAAACTACAAGCTC 59.965 45.833 0.00 0.00 0.00 4.09
2462 3043 4.722700 GGCCTGCTTCTTCCGGCA 62.723 66.667 0.00 0.00 44.23 5.69
2604 3188 0.546122 GGATGCTATGTGGGTGGACA 59.454 55.000 0.00 0.00 0.00 4.02
2616 3200 4.245660 CGACAAGAAGAAGTTGGATGCTA 58.754 43.478 0.00 0.00 0.00 3.49
2729 3361 2.672996 GCACCTGACGTTGGGCAT 60.673 61.111 12.19 0.00 0.00 4.40
2795 3433 1.081833 ACCTGGAGGAGGATGCTGT 59.918 57.895 0.00 0.00 46.33 4.40
2830 3468 3.006756 GCTGCTGTCGGAGGCACTA 62.007 63.158 0.00 0.00 36.97 2.74
3168 3843 2.046700 CTTCGGTAAAGGCGGCCA 60.047 61.111 23.09 0.00 0.00 5.36
3189 3864 1.611474 ATCCAAGCGAGCTGAGCTGA 61.611 55.000 13.71 1.18 45.31 4.26
3684 4409 8.547894 TCGAAATAGTGAAATTACCATTCGATG 58.452 33.333 0.00 0.00 0.00 3.84
3685 4410 8.657074 TCGAAATAGTGAAATTACCATTCGAT 57.343 30.769 0.00 0.00 0.00 3.59
3686 4411 7.223971 CCTCGAAATAGTGAAATTACCATTCGA 59.776 37.037 0.00 0.00 0.00 3.71
3687 4412 7.011109 ACCTCGAAATAGTGAAATTACCATTCG 59.989 37.037 0.00 0.00 0.00 3.34
3688 4413 8.209917 ACCTCGAAATAGTGAAATTACCATTC 57.790 34.615 0.00 0.00 0.00 2.67
3689 4414 9.326413 CTACCTCGAAATAGTGAAATTACCATT 57.674 33.333 0.00 0.00 0.00 3.16
3690 4415 7.441458 GCTACCTCGAAATAGTGAAATTACCAT 59.559 37.037 4.91 0.00 0.00 3.55
3691 4416 6.759827 GCTACCTCGAAATAGTGAAATTACCA 59.240 38.462 4.91 0.00 0.00 3.25
3705 4430 4.468510 TCCTCTTATTTGGCTACCTCGAAA 59.531 41.667 0.00 0.00 0.00 3.46
3712 4437 7.883311 TGGCTATTATTCCTCTTATTTGGCTAC 59.117 37.037 0.00 0.00 0.00 3.58
3726 4451 5.631119 TCTTAAGGCCTTGGCTATTATTCC 58.369 41.667 28.77 0.00 37.50 3.01
3757 4484 1.000145 GCGGCAGTACTACTCAAAGC 59.000 55.000 0.00 0.00 0.00 3.51
3786 4565 6.374053 GGAACGGAGGGAGTAGAATATAGTAC 59.626 46.154 0.00 0.00 0.00 2.73
3795 4587 3.744940 TTTAGGAACGGAGGGAGTAGA 57.255 47.619 0.00 0.00 0.00 2.59
3799 4591 5.681639 ACAAATATTTAGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
3800 4592 5.427481 AGACAAATATTTAGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
3801 4593 5.681639 AGACAAATATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
3802 4594 7.553044 AGAAAGACAAATATTTAGGAACGGAGG 59.447 37.037 0.00 0.00 0.00 4.30
3803 4595 8.494016 AGAAAGACAAATATTTAGGAACGGAG 57.506 34.615 0.00 0.00 0.00 4.63
3804 4596 9.595823 CTAGAAAGACAAATATTTAGGAACGGA 57.404 33.333 0.00 0.00 0.00 4.69
3805 4597 9.595823 TCTAGAAAGACAAATATTTAGGAACGG 57.404 33.333 0.00 0.00 0.00 4.44
3820 4612 9.996554 TCACTTGTTGAAATATCTAGAAAGACA 57.003 29.630 0.00 0.00 33.57 3.41
3829 4621 9.302345 CGTATGTAGTCACTTGTTGAAATATCT 57.698 33.333 0.00 0.00 35.39 1.98
3830 4622 8.540492 CCGTATGTAGTCACTTGTTGAAATATC 58.460 37.037 0.00 0.00 35.39 1.63
3831 4623 8.255206 TCCGTATGTAGTCACTTGTTGAAATAT 58.745 33.333 0.00 0.00 35.39 1.28
3832 4624 7.604549 TCCGTATGTAGTCACTTGTTGAAATA 58.395 34.615 0.00 0.00 35.39 1.40
3833 4625 6.460781 TCCGTATGTAGTCACTTGTTGAAAT 58.539 36.000 0.00 0.00 35.39 2.17
3834 4626 5.845103 TCCGTATGTAGTCACTTGTTGAAA 58.155 37.500 0.00 0.00 35.39 2.69
3835 4627 5.456548 TCCGTATGTAGTCACTTGTTGAA 57.543 39.130 0.00 0.00 35.39 2.69
3836 4628 4.617530 GCTCCGTATGTAGTCACTTGTTGA 60.618 45.833 0.00 0.00 0.00 3.18
3837 4629 3.612860 GCTCCGTATGTAGTCACTTGTTG 59.387 47.826 0.00 0.00 0.00 3.33
3838 4630 3.257375 TGCTCCGTATGTAGTCACTTGTT 59.743 43.478 0.00 0.00 0.00 2.83
3839 4631 2.823747 TGCTCCGTATGTAGTCACTTGT 59.176 45.455 0.00 0.00 0.00 3.16
3840 4632 3.503827 TGCTCCGTATGTAGTCACTTG 57.496 47.619 0.00 0.00 0.00 3.16
3841 4633 4.530710 TTTGCTCCGTATGTAGTCACTT 57.469 40.909 0.00 0.00 0.00 3.16
3842 4634 4.243270 GTTTTGCTCCGTATGTAGTCACT 58.757 43.478 0.00 0.00 0.00 3.41
3843 4635 3.991773 TGTTTTGCTCCGTATGTAGTCAC 59.008 43.478 0.00 0.00 0.00 3.67
3844 4636 4.260139 TGTTTTGCTCCGTATGTAGTCA 57.740 40.909 0.00 0.00 0.00 3.41
3845 4637 4.689345 ACTTGTTTTGCTCCGTATGTAGTC 59.311 41.667 0.00 0.00 0.00 2.59
3846 4638 4.451096 CACTTGTTTTGCTCCGTATGTAGT 59.549 41.667 0.00 0.00 0.00 2.73
3847 4639 4.688879 TCACTTGTTTTGCTCCGTATGTAG 59.311 41.667 0.00 0.00 0.00 2.74
3848 4640 4.633175 TCACTTGTTTTGCTCCGTATGTA 58.367 39.130 0.00 0.00 0.00 2.29
3849 4641 3.472652 TCACTTGTTTTGCTCCGTATGT 58.527 40.909 0.00 0.00 0.00 2.29
3850 4642 4.481930 TTCACTTGTTTTGCTCCGTATG 57.518 40.909 0.00 0.00 0.00 2.39
3851 4643 5.003804 AGATTCACTTGTTTTGCTCCGTAT 58.996 37.500 0.00 0.00 0.00 3.06
3852 4644 4.385825 AGATTCACTTGTTTTGCTCCGTA 58.614 39.130 0.00 0.00 0.00 4.02
3853 4645 3.214328 AGATTCACTTGTTTTGCTCCGT 58.786 40.909 0.00 0.00 0.00 4.69
3854 4646 3.904136 AGATTCACTTGTTTTGCTCCG 57.096 42.857 0.00 0.00 0.00 4.63
3855 4647 5.239525 AGTGTAGATTCACTTGTTTTGCTCC 59.760 40.000 0.00 0.00 44.92 4.70
3856 4648 6.203723 AGAGTGTAGATTCACTTGTTTTGCTC 59.796 38.462 0.98 0.00 46.81 4.26
3857 4649 6.058183 AGAGTGTAGATTCACTTGTTTTGCT 58.942 36.000 0.98 0.00 46.81 3.91
3858 4650 6.305693 AGAGTGTAGATTCACTTGTTTTGC 57.694 37.500 0.98 0.00 46.81 3.68
3861 4653 9.778741 TCATTTAGAGTGTAGATTCACTTGTTT 57.221 29.630 0.98 0.00 46.81 2.83
3862 4654 9.950496 ATCATTTAGAGTGTAGATTCACTTGTT 57.050 29.630 0.98 0.00 46.81 2.83
3863 4655 9.376075 CATCATTTAGAGTGTAGATTCACTTGT 57.624 33.333 0.98 0.00 46.81 3.16
3864 4656 9.376075 ACATCATTTAGAGTGTAGATTCACTTG 57.624 33.333 0.98 0.00 46.81 3.16
3865 4657 9.593134 GACATCATTTAGAGTGTAGATTCACTT 57.407 33.333 0.98 0.00 46.81 3.16
3888 4680 9.511272 ACTAACACATACGGATGTATATAGACA 57.489 33.333 23.23 2.07 44.82 3.41
3889 4681 9.985318 GACTAACACATACGGATGTATATAGAC 57.015 37.037 23.23 17.02 44.82 2.59
3890 4682 9.729281 TGACTAACACATACGGATGTATATAGA 57.271 33.333 23.23 8.05 44.82 1.98
3895 4687 8.826710 CAAATTGACTAACACATACGGATGTAT 58.173 33.333 14.23 8.21 44.82 2.29
3896 4688 8.035984 TCAAATTGACTAACACATACGGATGTA 58.964 33.333 14.23 0.00 44.82 2.29
3898 4690 7.302350 TCAAATTGACTAACACATACGGATG 57.698 36.000 5.94 5.94 39.16 3.51
3899 4691 9.607988 TTATCAAATTGACTAACACATACGGAT 57.392 29.630 0.00 0.00 0.00 4.18
3900 4692 8.875803 GTTATCAAATTGACTAACACATACGGA 58.124 33.333 16.20 0.00 0.00 4.69
3901 4693 8.879759 AGTTATCAAATTGACTAACACATACGG 58.120 33.333 19.92 0.00 30.23 4.02
3902 4694 9.901724 GAGTTATCAAATTGACTAACACATACG 57.098 33.333 19.92 0.00 30.23 3.06
3930 4722 8.422566 CCTCCGTTCCTAAATATAAGTCTTTCT 58.577 37.037 0.00 0.00 0.00 2.52
3931 4723 7.656542 CCCTCCGTTCCTAAATATAAGTCTTTC 59.343 40.741 0.00 0.00 0.00 2.62
3932 4724 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
3933 4725 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
3934 4726 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
3935 4727 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
3936 4728 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
3937 4729 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
3938 4730 6.723052 CCTACTCCCTCCGTTCCTAAATATAA 59.277 42.308 0.00 0.00 0.00 0.98
3939 4731 6.045931 TCCTACTCCCTCCGTTCCTAAATATA 59.954 42.308 0.00 0.00 0.00 0.86
3940 4732 5.085219 CCTACTCCCTCCGTTCCTAAATAT 58.915 45.833 0.00 0.00 0.00 1.28
3941 4733 4.168675 TCCTACTCCCTCCGTTCCTAAATA 59.831 45.833 0.00 0.00 0.00 1.40
3942 4734 3.052338 TCCTACTCCCTCCGTTCCTAAAT 60.052 47.826 0.00 0.00 0.00 1.40
3943 4735 2.312741 TCCTACTCCCTCCGTTCCTAAA 59.687 50.000 0.00 0.00 0.00 1.85
3944 4736 1.925255 TCCTACTCCCTCCGTTCCTAA 59.075 52.381 0.00 0.00 0.00 2.69
3945 4737 1.493871 CTCCTACTCCCTCCGTTCCTA 59.506 57.143 0.00 0.00 0.00 2.94
3946 4738 0.259356 CTCCTACTCCCTCCGTTCCT 59.741 60.000 0.00 0.00 0.00 3.36
3947 4739 0.033306 ACTCCTACTCCCTCCGTTCC 60.033 60.000 0.00 0.00 0.00 3.62
3948 4740 1.064537 AGACTCCTACTCCCTCCGTTC 60.065 57.143 0.00 0.00 0.00 3.95
3949 4741 1.001282 AGACTCCTACTCCCTCCGTT 58.999 55.000 0.00 0.00 0.00 4.44
3950 4742 1.770061 CTAGACTCCTACTCCCTCCGT 59.230 57.143 0.00 0.00 0.00 4.69
3951 4743 1.072648 CCTAGACTCCTACTCCCTCCG 59.927 61.905 0.00 0.00 0.00 4.63
3952 4744 2.107031 GTCCTAGACTCCTACTCCCTCC 59.893 59.091 0.00 0.00 0.00 4.30
3953 4745 2.778850 TGTCCTAGACTCCTACTCCCTC 59.221 54.545 0.00 0.00 33.15 4.30
3954 4746 2.861261 TGTCCTAGACTCCTACTCCCT 58.139 52.381 0.00 0.00 33.15 4.20
3955 4747 3.666345 TTGTCCTAGACTCCTACTCCC 57.334 52.381 0.00 0.00 33.15 4.30
3956 4748 4.794334 TCATTGTCCTAGACTCCTACTCC 58.206 47.826 0.00 0.00 33.15 3.85
3957 4749 6.065374 TGATCATTGTCCTAGACTCCTACTC 58.935 44.000 0.00 0.00 33.15 2.59
3958 4750 6.019656 TGATCATTGTCCTAGACTCCTACT 57.980 41.667 0.00 0.00 33.15 2.57
3959 4751 6.096987 TGTTGATCATTGTCCTAGACTCCTAC 59.903 42.308 0.00 0.00 33.15 3.18
3960 4752 6.194967 TGTTGATCATTGTCCTAGACTCCTA 58.805 40.000 0.00 0.00 33.15 2.94
3961 4753 5.026121 TGTTGATCATTGTCCTAGACTCCT 58.974 41.667 0.00 0.00 33.15 3.69
3980 4772 6.252967 TGTGCTGGTAATATCAAACTGTTG 57.747 37.500 0.00 0.00 35.95 3.33
4066 4858 3.716431 ACATTTAGGAACGGAGGGAGTA 58.284 45.455 0.00 0.00 0.00 2.59
4067 4859 2.547990 ACATTTAGGAACGGAGGGAGT 58.452 47.619 0.00 0.00 0.00 3.85
4068 4860 4.161754 ACTTACATTTAGGAACGGAGGGAG 59.838 45.833 0.00 0.00 0.00 4.30
4069 4861 4.098894 ACTTACATTTAGGAACGGAGGGA 58.901 43.478 0.00 0.00 0.00 4.20
4070 4862 4.161754 AGACTTACATTTAGGAACGGAGGG 59.838 45.833 0.00 0.00 0.00 4.30
4071 4863 5.340439 AGACTTACATTTAGGAACGGAGG 57.660 43.478 0.00 0.00 0.00 4.30
4072 4864 6.649557 ACAAAGACTTACATTTAGGAACGGAG 59.350 38.462 0.00 0.00 0.00 4.63
4073 4865 6.527423 ACAAAGACTTACATTTAGGAACGGA 58.473 36.000 0.00 0.00 0.00 4.69
4074 4866 6.796705 ACAAAGACTTACATTTAGGAACGG 57.203 37.500 0.00 0.00 0.00 4.44
4075 4867 8.752766 TCTACAAAGACTTACATTTAGGAACG 57.247 34.615 0.00 0.00 0.00 3.95
4076 4868 9.924650 TCTCTACAAAGACTTACATTTAGGAAC 57.075 33.333 0.00 0.00 0.00 3.62
4082 4874 9.965902 ATGGAATCTCTACAAAGACTTACATTT 57.034 29.630 0.00 0.00 0.00 2.32
4083 4875 9.965902 AATGGAATCTCTACAAAGACTTACATT 57.034 29.630 0.00 0.00 30.67 2.71
4091 4883 9.542462 CGGTTTATAATGGAATCTCTACAAAGA 57.458 33.333 0.00 0.00 0.00 2.52
4092 4884 8.283291 GCGGTTTATAATGGAATCTCTACAAAG 58.717 37.037 0.00 0.00 0.00 2.77
4093 4885 7.771361 TGCGGTTTATAATGGAATCTCTACAAA 59.229 33.333 0.00 0.00 0.00 2.83
4094 4886 7.225931 GTGCGGTTTATAATGGAATCTCTACAA 59.774 37.037 0.00 0.00 0.00 2.41
4095 4887 6.704493 GTGCGGTTTATAATGGAATCTCTACA 59.296 38.462 0.00 0.00 0.00 2.74
4096 4888 6.704493 TGTGCGGTTTATAATGGAATCTCTAC 59.296 38.462 0.00 0.00 0.00 2.59
4097 4889 6.704493 GTGTGCGGTTTATAATGGAATCTCTA 59.296 38.462 0.00 0.00 0.00 2.43
4098 4890 5.527582 GTGTGCGGTTTATAATGGAATCTCT 59.472 40.000 0.00 0.00 0.00 3.10
4099 4891 5.558273 CGTGTGCGGTTTATAATGGAATCTC 60.558 44.000 0.00 0.00 0.00 2.75
4100 4892 4.272504 CGTGTGCGGTTTATAATGGAATCT 59.727 41.667 0.00 0.00 0.00 2.40
4101 4893 4.523813 CGTGTGCGGTTTATAATGGAATC 58.476 43.478 0.00 0.00 0.00 2.52
4102 4894 4.545823 CGTGTGCGGTTTATAATGGAAT 57.454 40.909 0.00 0.00 0.00 3.01
4116 4908 3.547868 GCATCTATATACATCCGTGTGCG 59.452 47.826 0.00 0.00 39.39 5.34
4117 4909 4.494484 TGCATCTATATACATCCGTGTGC 58.506 43.478 0.00 0.00 39.39 4.57
4118 4910 7.601073 AAATGCATCTATATACATCCGTGTG 57.399 36.000 0.00 0.00 39.39 3.82
4119 4911 9.719355 TTAAAATGCATCTATATACATCCGTGT 57.281 29.630 0.00 0.00 42.39 4.49
4121 4913 9.944376 ACTTAAAATGCATCTATATACATCCGT 57.056 29.630 0.00 0.00 0.00 4.69
4144 4936 7.756722 CGGAGCAAAATGAATGAATCTAAACTT 59.243 33.333 0.00 0.00 0.00 2.66
4145 4937 7.094205 ACGGAGCAAAATGAATGAATCTAAACT 60.094 33.333 0.00 0.00 0.00 2.66
4146 4938 7.029563 ACGGAGCAAAATGAATGAATCTAAAC 58.970 34.615 0.00 0.00 0.00 2.01
4147 4939 7.156876 ACGGAGCAAAATGAATGAATCTAAA 57.843 32.000 0.00 0.00 0.00 1.85
4148 4940 6.757897 ACGGAGCAAAATGAATGAATCTAA 57.242 33.333 0.00 0.00 0.00 2.10
4149 4941 7.498900 ACATACGGAGCAAAATGAATGAATCTA 59.501 33.333 0.00 0.00 0.00 1.98
4150 4942 6.319658 ACATACGGAGCAAAATGAATGAATCT 59.680 34.615 0.00 0.00 0.00 2.40
4151 4943 6.498304 ACATACGGAGCAAAATGAATGAATC 58.502 36.000 0.00 0.00 0.00 2.52
4152 4944 6.455360 ACATACGGAGCAAAATGAATGAAT 57.545 33.333 0.00 0.00 0.00 2.57
4153 4945 5.895636 ACATACGGAGCAAAATGAATGAA 57.104 34.783 0.00 0.00 0.00 2.57
4154 4946 6.112734 ACTACATACGGAGCAAAATGAATGA 58.887 36.000 0.00 0.00 0.00 2.57
4155 4947 6.363577 ACTACATACGGAGCAAAATGAATG 57.636 37.500 0.00 0.00 0.00 2.67
4156 4948 5.527582 GGACTACATACGGAGCAAAATGAAT 59.472 40.000 0.00 0.00 0.00 2.57
4157 4949 4.873827 GGACTACATACGGAGCAAAATGAA 59.126 41.667 0.00 0.00 0.00 2.57
4158 4950 4.081365 TGGACTACATACGGAGCAAAATGA 60.081 41.667 0.00 0.00 0.00 2.57
4159 4951 4.034048 GTGGACTACATACGGAGCAAAATG 59.966 45.833 0.00 0.00 0.00 2.32
4160 4952 4.189231 GTGGACTACATACGGAGCAAAAT 58.811 43.478 0.00 0.00 0.00 1.82
4161 4953 3.592059 GTGGACTACATACGGAGCAAAA 58.408 45.455 0.00 0.00 0.00 2.44
4162 4954 2.093869 GGTGGACTACATACGGAGCAAA 60.094 50.000 0.00 0.00 0.00 3.68
4163 4955 1.479323 GGTGGACTACATACGGAGCAA 59.521 52.381 0.00 0.00 0.00 3.91
4164 4956 1.108776 GGTGGACTACATACGGAGCA 58.891 55.000 0.00 0.00 0.00 4.26
4165 4957 1.400737 AGGTGGACTACATACGGAGC 58.599 55.000 0.00 0.00 0.00 4.70
4166 4958 3.564644 CACTAGGTGGACTACATACGGAG 59.435 52.174 0.00 0.00 0.00 4.63
4167 4959 3.548770 CACTAGGTGGACTACATACGGA 58.451 50.000 0.00 0.00 0.00 4.69
4168 4960 3.984508 CACTAGGTGGACTACATACGG 57.015 52.381 0.00 0.00 0.00 4.02
4180 4972 6.153680 AGTCTTTGTAGAGATTCCACTAGGTG 59.846 42.308 0.00 0.00 35.89 4.00
4181 4973 6.257586 AGTCTTTGTAGAGATTCCACTAGGT 58.742 40.000 0.00 0.00 35.89 3.08
4182 4974 6.783708 AGTCTTTGTAGAGATTCCACTAGG 57.216 41.667 0.00 0.00 0.00 3.02
4197 4989 7.985752 CCTCCGTTCCTAAATATAAGTCTTTGT 59.014 37.037 0.00 0.00 0.00 2.83
4198 4990 7.441458 CCCTCCGTTCCTAAATATAAGTCTTTG 59.559 40.741 0.00 0.00 0.00 2.77
4199 4991 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
4200 4992 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
4201 4993 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
4202 4994 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
4203 4995 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
4204 4996 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
4205 4997 8.551682 TTTACTCCCTCCGTTCCTAAATATAA 57.448 34.615 0.00 0.00 0.00 0.98
4206 4998 8.424133 GTTTTACTCCCTCCGTTCCTAAATATA 58.576 37.037 0.00 0.00 0.00 0.86
4207 4999 7.092757 TGTTTTACTCCCTCCGTTCCTAAATAT 60.093 37.037 0.00 0.00 0.00 1.28
4208 5000 6.213195 TGTTTTACTCCCTCCGTTCCTAAATA 59.787 38.462 0.00 0.00 0.00 1.40
4209 5001 5.013391 TGTTTTACTCCCTCCGTTCCTAAAT 59.987 40.000 0.00 0.00 0.00 1.40
4210 5002 4.347583 TGTTTTACTCCCTCCGTTCCTAAA 59.652 41.667 0.00 0.00 0.00 1.85
4211 5003 3.903090 TGTTTTACTCCCTCCGTTCCTAA 59.097 43.478 0.00 0.00 0.00 2.69
4212 5004 3.509442 TGTTTTACTCCCTCCGTTCCTA 58.491 45.455 0.00 0.00 0.00 2.94
4213 5005 2.332117 TGTTTTACTCCCTCCGTTCCT 58.668 47.619 0.00 0.00 0.00 3.36
4214 5006 2.845363 TGTTTTACTCCCTCCGTTCC 57.155 50.000 0.00 0.00 0.00 3.62
4215 5007 4.874396 CCTTATGTTTTACTCCCTCCGTTC 59.126 45.833 0.00 0.00 0.00 3.95
4216 5008 4.533311 TCCTTATGTTTTACTCCCTCCGTT 59.467 41.667 0.00 0.00 0.00 4.44
4217 5009 4.098894 TCCTTATGTTTTACTCCCTCCGT 58.901 43.478 0.00 0.00 0.00 4.69
4218 5010 4.748277 TCCTTATGTTTTACTCCCTCCG 57.252 45.455 0.00 0.00 0.00 4.63
4219 5011 5.132144 TCCATCCTTATGTTTTACTCCCTCC 59.868 44.000 0.00 0.00 0.00 4.30
4220 5012 6.248569 TCCATCCTTATGTTTTACTCCCTC 57.751 41.667 0.00 0.00 0.00 4.30
4221 5013 6.652205 TTCCATCCTTATGTTTTACTCCCT 57.348 37.500 0.00 0.00 0.00 4.20
4222 5014 7.559897 TGATTTCCATCCTTATGTTTTACTCCC 59.440 37.037 0.00 0.00 0.00 4.30
4223 5015 8.519799 TGATTTCCATCCTTATGTTTTACTCC 57.480 34.615 0.00 0.00 0.00 3.85
4295 5090 4.319177 GTGGACAGCTACTCATCTTTTGT 58.681 43.478 0.00 0.00 0.00 2.83
4309 5104 0.944386 AACATTCACACGTGGACAGC 59.056 50.000 21.57 0.00 0.00 4.40
4320 5121 9.797556 GAACCCCTATACAAATAAAACATTCAC 57.202 33.333 0.00 0.00 0.00 3.18
4374 5176 8.718102 TTTAGCGAATAGAAGAACAGCTTATT 57.282 30.769 0.00 0.00 36.83 1.40
4448 5252 7.234355 AGGAGAGGCAAAATAATATGGTTAGG 58.766 38.462 0.00 0.00 0.00 2.69
4467 5273 3.559384 GGGTTACCACCTGAAAAGGAGAG 60.559 52.174 2.98 0.00 43.65 3.20
4468 5274 2.374170 GGGTTACCACCTGAAAAGGAGA 59.626 50.000 2.98 0.00 43.65 3.71
4593 5408 5.422012 TCACATACTCTGGCAGAATGTCTAA 59.578 40.000 24.88 14.46 44.57 2.10
4622 5437 7.598278 TCTCAAGTACAACAAACAAACAACAT 58.402 30.769 0.00 0.00 0.00 2.71
4651 5550 7.179160 TCTGAGTTCTGAATTAAGATCTCACCA 59.821 37.037 22.28 13.19 43.33 4.17
4656 5555 8.257306 GGTCTTCTGAGTTCTGAATTAAGATCT 58.743 37.037 3.37 3.37 34.17 2.75
4672 5571 6.867662 AACACATAAAACAGGTCTTCTGAG 57.132 37.500 0.00 0.00 46.18 3.35
4673 5572 8.918202 AATAACACATAAAACAGGTCTTCTGA 57.082 30.769 0.00 0.00 46.18 3.27
4675 5574 9.574516 AAGAATAACACATAAAACAGGTCTTCT 57.425 29.630 0.00 0.00 0.00 2.85
4678 5577 9.965824 CAAAAGAATAACACATAAAACAGGTCT 57.034 29.630 0.00 0.00 0.00 3.85
4709 5608 9.581289 TGGAAACATGAGACCTAAATCTAAAAA 57.419 29.630 0.00 0.00 33.40 1.94
4710 5609 9.010029 GTGGAAACATGAGACCTAAATCTAAAA 57.990 33.333 0.00 0.00 46.14 1.52
4720 5619 4.202503 ACTGATTGTGGAAACATGAGACCT 60.203 41.667 0.00 0.00 46.14 3.85
4751 5650 6.649141 AGCAAGTCACGAATCAAACACTAATA 59.351 34.615 0.00 0.00 0.00 0.98
4767 5666 5.640732 TGAAAAGAAGAACAAGCAAGTCAC 58.359 37.500 0.00 0.00 0.00 3.67
4769 5668 7.761651 ATTTGAAAAGAAGAACAAGCAAGTC 57.238 32.000 0.00 0.00 0.00 3.01
4795 5695 9.013229 AGTACTGTTCTAAATTTCATGCATTGA 57.987 29.630 0.00 0.00 0.00 2.57
4882 5782 6.336566 ACTGAGCATGAACAGTATCTAGTTG 58.663 40.000 18.81 0.00 44.06 3.16
4934 5835 1.065199 CAGCCTGCCAGAAAGATGGTA 60.065 52.381 0.00 0.00 42.75 3.25
5101 6002 6.320926 TCTGATCTGTCAAATGTTCAAACCAA 59.679 34.615 0.00 0.00 33.05 3.67
5177 6078 6.460953 GGTCCACAGACAAGCTTCAATTTTTA 60.461 38.462 0.00 0.00 45.48 1.52
5275 6182 6.944234 AGATAACCCGGAGATTTTCATTTC 57.056 37.500 0.73 0.00 0.00 2.17
5288 6195 2.561569 CACTTGGCTTAGATAACCCGG 58.438 52.381 0.00 0.00 0.00 5.73
5349 6256 2.083774 TGCGGGCAGAAAGAGTTATTG 58.916 47.619 0.00 0.00 0.00 1.90
5512 6419 9.143631 CGAAGAAGCCAATTTTAAATTTCAGAT 57.856 29.630 0.00 0.00 0.00 2.90
5541 6448 8.696043 TTCTCTCATCCAAATCTGAAGAAAAA 57.304 30.769 0.00 0.00 0.00 1.94
5642 6550 6.728200 ACACAGACACACATAAAAGATTGTG 58.272 36.000 1.74 1.74 46.76 3.33
5750 6676 6.873605 TCATACCATGTCACTACAAACTCTTG 59.126 38.462 0.00 0.00 39.58 3.02
5751 6677 7.004555 TCATACCATGTCACTACAAACTCTT 57.995 36.000 0.00 0.00 39.58 2.85
5762 6688 6.150976 TCTGAAACCAATTCATACCATGTCAC 59.849 38.462 0.00 0.00 46.62 3.67
5873 6799 7.080724 CCTGAAGTAGCAATTTTCACTTCTTC 58.919 38.462 17.33 12.12 44.59 2.87
5891 6817 0.321653 GGAATGACGCCACCTGAAGT 60.322 55.000 0.00 0.00 0.00 3.01
5971 6897 0.036671 TGCATCAGAGCTGTGTCTGG 60.037 55.000 11.09 0.61 43.69 3.86
6011 6945 2.162681 GCAAACAAGGCTCCAGTACAT 58.837 47.619 0.00 0.00 0.00 2.29
6102 7041 5.713389 TGAAATGCTTCTCAAATGATCACCT 59.287 36.000 0.00 0.00 32.33 4.00
6148 7087 6.616017 TGATACATCAGCATCTAGACGAATC 58.384 40.000 0.00 0.00 32.11 2.52
6209 7166 0.179197 CTCGCAAGCTGATGCAACAG 60.179 55.000 18.92 18.92 46.76 3.16
6215 7173 1.198408 TGCTTTTCTCGCAAGCTGATG 59.802 47.619 7.18 0.00 45.90 3.07
6334 7304 5.807011 GCCAGTTTTGTCATAAATCCATCAC 59.193 40.000 0.00 0.00 0.00 3.06
6394 7405 7.897864 TCCTTTTACAGTTTTCAGGTTTTCAA 58.102 30.769 0.00 0.00 0.00 2.69
6441 7567 5.423610 AGGTATCCCATCTCTTATCCGATTG 59.576 44.000 0.00 0.00 0.00 2.67
6499 7626 2.481449 GCACCGGTCAAACGAGAGATAT 60.481 50.000 2.59 0.00 35.47 1.63
6508 7635 1.574702 GCCTACAGCACCGGTCAAAC 61.575 60.000 2.59 0.00 42.97 2.93
6509 7636 1.302192 GCCTACAGCACCGGTCAAA 60.302 57.895 2.59 0.00 42.97 2.69
6522 7649 6.987404 CCTCATAGAAAACTTCCTAAGCCTAC 59.013 42.308 0.00 0.00 0.00 3.18
6525 7652 5.104485 TCCCTCATAGAAAACTTCCTAAGCC 60.104 44.000 0.00 0.00 0.00 4.35
6635 7791 9.832445 ACCATATAAGGTTCTAGTGTACAAATG 57.168 33.333 0.00 0.00 39.34 2.32
6660 7816 5.780958 AATGAGGCCTATATAGGGGAAAC 57.219 43.478 26.76 11.85 43.82 2.78
6758 8058 4.222810 AGCCGGAAAGCAAAGGATATTTTT 59.777 37.500 5.05 0.00 34.23 1.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.