Multiple sequence alignment - TraesCS2B01G518400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G518400 chr2B 100.000 3719 0 0 1 3719 712961186 712957468 0.000000e+00 6868.0
1 TraesCS2B01G518400 chr2A 87.485 1646 134 34 344 1962 723653108 723651508 0.000000e+00 1832.0
2 TraesCS2B01G518400 chr2A 92.494 826 49 4 2043 2866 723650485 723649671 0.000000e+00 1170.0
3 TraesCS2B01G518400 chr2D 92.961 1236 63 8 746 1962 589318816 589317586 0.000000e+00 1779.0
4 TraesCS2B01G518400 chr2D 92.633 828 57 3 2043 2868 589316779 589315954 0.000000e+00 1188.0
5 TraesCS2B01G518400 chr2D 89.000 100 9 2 2868 2967 512922849 512922752 5.040000e-24 122.0
6 TraesCS2B01G518400 chr2D 100.000 36 0 0 3456 3491 60763908 60763873 2.400000e-07 67.6
7 TraesCS2B01G518400 chr6B 92.588 877 29 12 2869 3719 116579223 116578357 0.000000e+00 1227.0
8 TraesCS2B01G518400 chr6B 92.132 877 34 13 2869 3719 17383472 17382605 0.000000e+00 1205.0
9 TraesCS2B01G518400 chr7B 92.474 877 29 11 2869 3719 723732172 723733037 0.000000e+00 1219.0
10 TraesCS2B01G518400 chr7B 100.000 29 0 0 3227 3255 716705723 716705751 2.000000e-03 54.7
11 TraesCS2B01G518400 chr7A 92.202 872 35 12 2868 3719 411542393 411543251 0.000000e+00 1203.0
12 TraesCS2B01G518400 chr1D 85.908 1107 111 23 868 1942 250922360 250923453 0.000000e+00 1138.0
13 TraesCS2B01G518400 chr1D 86.621 1024 111 9 935 1942 29692802 29691789 0.000000e+00 1109.0
14 TraesCS2B01G518400 chr1D 86.432 995 111 10 957 1942 8388039 8389018 0.000000e+00 1068.0
15 TraesCS2B01G518400 chr1D 82.148 633 109 4 2045 2674 29690172 29689541 1.180000e-149 540.0
16 TraesCS2B01G518400 chr3B 86.004 1086 119 18 877 1942 66170774 66171846 0.000000e+00 1133.0
17 TraesCS2B01G518400 chr3D 85.885 1091 116 20 877 1942 41784538 41783461 0.000000e+00 1127.0
18 TraesCS2B01G518400 chr3D 84.604 682 103 1 2045 2724 41783083 41782402 0.000000e+00 676.0
19 TraesCS2B01G518400 chr3A 85.270 1093 126 24 878 1949 53738518 53739596 0.000000e+00 1094.0
20 TraesCS2B01G518400 chr3A 88.000 125 10 4 3195 3319 681055273 681055154 3.870000e-30 143.0
21 TraesCS2B01G518400 chr3A 97.222 36 1 0 3456 3491 681054937 681054902 1.120000e-05 62.1
22 TraesCS2B01G518400 chr7D 94.388 695 26 4 3003 3697 199607816 199607135 0.000000e+00 1055.0
23 TraesCS2B01G518400 chr1B 85.628 995 119 10 957 1942 11406859 11407838 0.000000e+00 1024.0
24 TraesCS2B01G518400 chr1B 84.992 653 98 0 2049 2701 363477968 363477316 0.000000e+00 664.0
25 TraesCS2B01G518400 chr1B 81.902 652 117 1 2054 2704 11408427 11409078 1.950000e-152 549.0
26 TraesCS2B01G518400 chr1A 85.474 654 95 0 2049 2702 321113812 321114465 0.000000e+00 682.0
27 TraesCS2B01G518400 chr1A 85.600 125 13 4 3195 3319 558267154 558267035 3.900000e-25 126.0
28 TraesCS2B01G518400 chr1A 97.222 36 1 0 3456 3491 558266819 558266784 1.120000e-05 62.1
29 TraesCS2B01G518400 chr5A 84.685 222 15 6 2869 3071 697551222 697551001 1.750000e-48 204.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G518400 chr2B 712957468 712961186 3718 True 6868.0 6868 100.0000 1 3719 1 chr2B.!!$R1 3718
1 TraesCS2B01G518400 chr2A 723649671 723653108 3437 True 1501.0 1832 89.9895 344 2866 2 chr2A.!!$R1 2522
2 TraesCS2B01G518400 chr2D 589315954 589318816 2862 True 1483.5 1779 92.7970 746 2868 2 chr2D.!!$R3 2122
3 TraesCS2B01G518400 chr6B 116578357 116579223 866 True 1227.0 1227 92.5880 2869 3719 1 chr6B.!!$R2 850
4 TraesCS2B01G518400 chr6B 17382605 17383472 867 True 1205.0 1205 92.1320 2869 3719 1 chr6B.!!$R1 850
5 TraesCS2B01G518400 chr7B 723732172 723733037 865 False 1219.0 1219 92.4740 2869 3719 1 chr7B.!!$F2 850
6 TraesCS2B01G518400 chr7A 411542393 411543251 858 False 1203.0 1203 92.2020 2868 3719 1 chr7A.!!$F1 851
7 TraesCS2B01G518400 chr1D 250922360 250923453 1093 False 1138.0 1138 85.9080 868 1942 1 chr1D.!!$F2 1074
8 TraesCS2B01G518400 chr1D 8388039 8389018 979 False 1068.0 1068 86.4320 957 1942 1 chr1D.!!$F1 985
9 TraesCS2B01G518400 chr1D 29689541 29692802 3261 True 824.5 1109 84.3845 935 2674 2 chr1D.!!$R1 1739
10 TraesCS2B01G518400 chr3B 66170774 66171846 1072 False 1133.0 1133 86.0040 877 1942 1 chr3B.!!$F1 1065
11 TraesCS2B01G518400 chr3D 41782402 41784538 2136 True 901.5 1127 85.2445 877 2724 2 chr3D.!!$R1 1847
12 TraesCS2B01G518400 chr3A 53738518 53739596 1078 False 1094.0 1094 85.2700 878 1949 1 chr3A.!!$F1 1071
13 TraesCS2B01G518400 chr7D 199607135 199607816 681 True 1055.0 1055 94.3880 3003 3697 1 chr7D.!!$R1 694
14 TraesCS2B01G518400 chr1B 11406859 11409078 2219 False 786.5 1024 83.7650 957 2704 2 chr1B.!!$F1 1747
15 TraesCS2B01G518400 chr1B 363477316 363477968 652 True 664.0 664 84.9920 2049 2701 1 chr1B.!!$R1 652
16 TraesCS2B01G518400 chr1A 321113812 321114465 653 False 682.0 682 85.4740 2049 2702 1 chr1A.!!$F1 653

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
57 58 0.033504 GTCGTCTCCTTCAGTTGCCA 59.966 55.0 0.00 0.00 0.00 4.92 F
199 200 0.034059 GATGTATGCTCCCTCACCCG 59.966 60.0 0.00 0.00 0.00 5.28 F
253 254 0.108207 GCCATCTCCCTCACCATGAG 59.892 60.0 0.00 0.00 43.91 2.90 F
254 255 0.108207 CCATCTCCCTCACCATGAGC 59.892 60.0 0.00 0.00 42.98 4.26 F
310 311 0.244721 GCCAGACCAAATCCACAAGC 59.755 55.0 0.00 0.00 0.00 4.01 F
744 757 0.249911 CGGAGGGAAGGCCTTATTCG 60.250 60.0 20.54 14.32 0.00 3.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1904 2014 0.034896 GATGTTGTCACGGGTGAGGT 59.965 55.000 0.94 0.0 40.75 3.85 R
2025 2493 1.263217 CACACTTCAGTTTACCGCACC 59.737 52.381 0.00 0.0 0.00 5.01 R
2238 4454 2.045242 TGTAGCCGGAGCGTCTCT 60.045 61.111 5.05 0.0 46.67 3.10 R
2274 4490 2.434185 TCGGCGTTCTCATGGTGC 60.434 61.111 6.85 0.0 0.00 5.01 R
2460 4676 1.604604 CGAAGGGCAGGAACTCAAAA 58.395 50.000 0.00 0.0 34.60 2.44 R
2811 5036 0.323633 TCCATGGACCCGTCGTCTAA 60.324 55.000 11.44 0.0 41.64 2.10 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.998913 TGATTGATACCAACCAGCTGA 57.001 42.857 17.39 0.00 34.72 4.26
21 22 4.299586 TGATTGATACCAACCAGCTGAA 57.700 40.909 17.39 0.00 34.72 3.02
22 23 4.661222 TGATTGATACCAACCAGCTGAAA 58.339 39.130 17.39 0.00 34.72 2.69
23 24 5.076182 TGATTGATACCAACCAGCTGAAAA 58.924 37.500 17.39 0.00 34.72 2.29
24 25 5.538053 TGATTGATACCAACCAGCTGAAAAA 59.462 36.000 17.39 0.00 34.72 1.94
25 26 4.846779 TGATACCAACCAGCTGAAAAAC 57.153 40.909 17.39 0.00 0.00 2.43
26 27 4.211125 TGATACCAACCAGCTGAAAAACA 58.789 39.130 17.39 2.18 0.00 2.83
27 28 4.646945 TGATACCAACCAGCTGAAAAACAA 59.353 37.500 17.39 0.00 0.00 2.83
28 29 5.304101 TGATACCAACCAGCTGAAAAACAAT 59.696 36.000 17.39 0.00 0.00 2.71
29 30 4.486125 ACCAACCAGCTGAAAAACAATT 57.514 36.364 17.39 0.00 0.00 2.32
30 31 4.842574 ACCAACCAGCTGAAAAACAATTT 58.157 34.783 17.39 0.00 0.00 1.82
31 32 4.635324 ACCAACCAGCTGAAAAACAATTTG 59.365 37.500 17.39 4.04 0.00 2.32
32 33 4.035441 CCAACCAGCTGAAAAACAATTTGG 59.965 41.667 17.39 9.01 32.90 3.28
33 34 3.205338 ACCAGCTGAAAAACAATTTGGC 58.795 40.909 17.39 0.00 31.09 4.52
34 35 2.221517 CCAGCTGAAAAACAATTTGGCG 59.778 45.455 17.39 0.00 0.00 5.69
35 36 1.866601 AGCTGAAAAACAATTTGGCGC 59.133 42.857 0.00 0.00 0.00 6.53
36 37 1.069973 GCTGAAAAACAATTTGGCGCC 60.070 47.619 22.73 22.73 0.00 6.53
37 38 1.192090 CTGAAAAACAATTTGGCGCCG 59.808 47.619 23.90 9.63 0.00 6.46
38 39 0.510790 GAAAAACAATTTGGCGCCGG 59.489 50.000 23.90 11.07 0.00 6.13
39 40 0.179070 AAAAACAATTTGGCGCCGGT 60.179 45.000 23.90 11.76 0.00 5.28
40 41 0.598942 AAAACAATTTGGCGCCGGTC 60.599 50.000 23.90 0.00 0.00 4.79
41 42 2.741116 AAACAATTTGGCGCCGGTCG 62.741 55.000 23.90 11.57 42.12 4.79
42 43 3.732892 CAATTTGGCGCCGGTCGT 61.733 61.111 23.90 2.30 41.07 4.34
43 44 3.428282 AATTTGGCGCCGGTCGTC 61.428 61.111 23.90 14.61 44.40 4.20
44 45 3.894547 AATTTGGCGCCGGTCGTCT 62.895 57.895 23.90 0.00 44.46 4.18
50 51 3.744719 CGCCGGTCGTCTCCTTCA 61.745 66.667 1.90 0.00 0.00 3.02
51 52 2.182030 GCCGGTCGTCTCCTTCAG 59.818 66.667 1.90 0.00 0.00 3.02
52 53 2.637383 GCCGGTCGTCTCCTTCAGT 61.637 63.158 1.90 0.00 0.00 3.41
53 54 1.965219 CCGGTCGTCTCCTTCAGTT 59.035 57.895 0.00 0.00 0.00 3.16
54 55 0.388649 CCGGTCGTCTCCTTCAGTTG 60.389 60.000 0.00 0.00 0.00 3.16
55 56 1.009389 CGGTCGTCTCCTTCAGTTGC 61.009 60.000 0.00 0.00 0.00 4.17
56 57 0.670854 GGTCGTCTCCTTCAGTTGCC 60.671 60.000 0.00 0.00 0.00 4.52
57 58 0.033504 GTCGTCTCCTTCAGTTGCCA 59.966 55.000 0.00 0.00 0.00 4.92
58 59 0.033504 TCGTCTCCTTCAGTTGCCAC 59.966 55.000 0.00 0.00 0.00 5.01
59 60 1.284982 CGTCTCCTTCAGTTGCCACG 61.285 60.000 0.00 0.00 0.00 4.94
60 61 1.301716 TCTCCTTCAGTTGCCACGC 60.302 57.895 0.00 0.00 0.00 5.34
61 62 2.664851 TCCTTCAGTTGCCACGCG 60.665 61.111 3.53 3.53 0.00 6.01
62 63 2.972505 CCTTCAGTTGCCACGCGT 60.973 61.111 5.58 5.58 0.00 6.01
63 64 2.551270 CTTCAGTTGCCACGCGTC 59.449 61.111 9.86 0.00 0.00 5.19
64 65 2.954753 CTTCAGTTGCCACGCGTCC 61.955 63.158 9.86 3.70 0.00 4.79
77 78 3.245315 CGTCCGCTTCGCTTACCG 61.245 66.667 0.00 0.00 38.61 4.02
78 79 3.551915 GTCCGCTTCGCTTACCGC 61.552 66.667 0.00 0.00 36.73 5.68
79 80 4.058732 TCCGCTTCGCTTACCGCA 62.059 61.111 0.00 0.00 39.08 5.69
80 81 3.115892 CCGCTTCGCTTACCGCAA 61.116 61.111 0.00 0.00 39.08 4.85
81 82 2.095843 CGCTTCGCTTACCGCAAC 59.904 61.111 0.00 0.00 39.08 4.17
82 83 2.479198 GCTTCGCTTACCGCAACC 59.521 61.111 0.00 0.00 39.08 3.77
83 84 2.033194 GCTTCGCTTACCGCAACCT 61.033 57.895 0.00 0.00 39.08 3.50
84 85 1.574702 GCTTCGCTTACCGCAACCTT 61.575 55.000 0.00 0.00 39.08 3.50
85 86 1.717194 CTTCGCTTACCGCAACCTTA 58.283 50.000 0.00 0.00 39.08 2.69
86 87 2.277084 CTTCGCTTACCGCAACCTTAT 58.723 47.619 0.00 0.00 39.08 1.73
87 88 1.930567 TCGCTTACCGCAACCTTATC 58.069 50.000 0.00 0.00 39.08 1.75
88 89 1.479323 TCGCTTACCGCAACCTTATCT 59.521 47.619 0.00 0.00 39.08 1.98
89 90 1.859080 CGCTTACCGCAACCTTATCTC 59.141 52.381 0.00 0.00 39.08 2.75
90 91 2.481449 CGCTTACCGCAACCTTATCTCT 60.481 50.000 0.00 0.00 39.08 3.10
91 92 3.532542 GCTTACCGCAACCTTATCTCTT 58.467 45.455 0.00 0.00 38.92 2.85
92 93 3.939592 GCTTACCGCAACCTTATCTCTTT 59.060 43.478 0.00 0.00 38.92 2.52
93 94 4.034163 GCTTACCGCAACCTTATCTCTTTC 59.966 45.833 0.00 0.00 38.92 2.62
94 95 3.983044 ACCGCAACCTTATCTCTTTCT 57.017 42.857 0.00 0.00 0.00 2.52
95 96 4.287766 ACCGCAACCTTATCTCTTTCTT 57.712 40.909 0.00 0.00 0.00 2.52
96 97 4.254492 ACCGCAACCTTATCTCTTTCTTC 58.746 43.478 0.00 0.00 0.00 2.87
97 98 4.020128 ACCGCAACCTTATCTCTTTCTTCT 60.020 41.667 0.00 0.00 0.00 2.85
98 99 4.938226 CCGCAACCTTATCTCTTTCTTCTT 59.062 41.667 0.00 0.00 0.00 2.52
99 100 5.163814 CCGCAACCTTATCTCTTTCTTCTTG 60.164 44.000 0.00 0.00 0.00 3.02
100 101 5.635866 GCAACCTTATCTCTTTCTTCTTGC 58.364 41.667 0.00 0.00 0.00 4.01
101 102 5.392487 GCAACCTTATCTCTTTCTTCTTGCC 60.392 44.000 0.00 0.00 0.00 4.52
102 103 5.770685 ACCTTATCTCTTTCTTCTTGCCT 57.229 39.130 0.00 0.00 0.00 4.75
103 104 5.739959 ACCTTATCTCTTTCTTCTTGCCTC 58.260 41.667 0.00 0.00 0.00 4.70
104 105 5.487131 ACCTTATCTCTTTCTTCTTGCCTCT 59.513 40.000 0.00 0.00 0.00 3.69
105 106 6.012945 ACCTTATCTCTTTCTTCTTGCCTCTT 60.013 38.462 0.00 0.00 0.00 2.85
106 107 6.538381 CCTTATCTCTTTCTTCTTGCCTCTTC 59.462 42.308 0.00 0.00 0.00 2.87
107 108 5.760484 ATCTCTTTCTTCTTGCCTCTTCT 57.240 39.130 0.00 0.00 0.00 2.85
108 109 5.559148 TCTCTTTCTTCTTGCCTCTTCTT 57.441 39.130 0.00 0.00 0.00 2.52
109 110 5.546526 TCTCTTTCTTCTTGCCTCTTCTTC 58.453 41.667 0.00 0.00 0.00 2.87
110 111 4.646572 TCTTTCTTCTTGCCTCTTCTTCC 58.353 43.478 0.00 0.00 0.00 3.46
111 112 3.425162 TTCTTCTTGCCTCTTCTTCCC 57.575 47.619 0.00 0.00 0.00 3.97
112 113 1.630878 TCTTCTTGCCTCTTCTTCCCC 59.369 52.381 0.00 0.00 0.00 4.81
113 114 0.324943 TTCTTGCCTCTTCTTCCCCG 59.675 55.000 0.00 0.00 0.00 5.73
114 115 1.746991 CTTGCCTCTTCTTCCCCGC 60.747 63.158 0.00 0.00 0.00 6.13
115 116 2.190488 CTTGCCTCTTCTTCCCCGCT 62.190 60.000 0.00 0.00 0.00 5.52
116 117 2.124942 GCCTCTTCTTCCCCGCTG 60.125 66.667 0.00 0.00 0.00 5.18
117 118 2.586792 CCTCTTCTTCCCCGCTGG 59.413 66.667 0.00 0.00 0.00 4.85
118 119 2.124942 CTCTTCTTCCCCGCTGGC 60.125 66.667 0.00 0.00 0.00 4.85
119 120 2.927856 TCTTCTTCCCCGCTGGCA 60.928 61.111 0.00 0.00 0.00 4.92
120 121 2.262774 CTCTTCTTCCCCGCTGGCAT 62.263 60.000 0.00 0.00 0.00 4.40
121 122 2.045045 TTCTTCCCCGCTGGCATG 60.045 61.111 0.00 0.00 0.00 4.06
122 123 4.802051 TCTTCCCCGCTGGCATGC 62.802 66.667 9.90 9.90 0.00 4.06
127 128 4.424566 CCCGCTGGCATGCACAAC 62.425 66.667 21.36 9.52 0.00 3.32
128 129 4.424566 CCGCTGGCATGCACAACC 62.425 66.667 21.36 1.47 0.00 3.77
129 130 3.367743 CGCTGGCATGCACAACCT 61.368 61.111 21.36 0.00 0.00 3.50
130 131 2.570181 GCTGGCATGCACAACCTC 59.430 61.111 21.36 0.00 0.00 3.85
131 132 2.998279 GCTGGCATGCACAACCTCC 61.998 63.158 21.36 0.00 0.00 4.30
132 133 1.303888 CTGGCATGCACAACCTCCT 60.304 57.895 21.36 0.00 0.00 3.69
133 134 1.303561 TGGCATGCACAACCTCCTC 60.304 57.895 21.36 0.00 0.00 3.71
134 135 1.001641 GGCATGCACAACCTCCTCT 60.002 57.895 21.36 0.00 0.00 3.69
135 136 0.610232 GGCATGCACAACCTCCTCTT 60.610 55.000 21.36 0.00 0.00 2.85
136 137 0.524862 GCATGCACAACCTCCTCTTG 59.475 55.000 14.21 0.00 0.00 3.02
137 138 0.524862 CATGCACAACCTCCTCTTGC 59.475 55.000 0.00 0.00 0.00 4.01
138 139 0.403271 ATGCACAACCTCCTCTTGCT 59.597 50.000 0.00 0.00 34.18 3.91
139 140 0.250467 TGCACAACCTCCTCTTGCTC 60.250 55.000 0.00 0.00 34.18 4.26
140 141 0.957888 GCACAACCTCCTCTTGCTCC 60.958 60.000 0.00 0.00 0.00 4.70
141 142 0.397941 CACAACCTCCTCTTGCTCCA 59.602 55.000 0.00 0.00 0.00 3.86
142 143 1.140312 ACAACCTCCTCTTGCTCCAA 58.860 50.000 0.00 0.00 0.00 3.53
143 144 1.202818 ACAACCTCCTCTTGCTCCAAC 60.203 52.381 0.00 0.00 0.00 3.77
144 145 0.402121 AACCTCCTCTTGCTCCAACC 59.598 55.000 0.00 0.00 0.00 3.77
145 146 1.078848 CCTCCTCTTGCTCCAACCG 60.079 63.158 0.00 0.00 0.00 4.44
146 147 1.743252 CTCCTCTTGCTCCAACCGC 60.743 63.158 0.00 0.00 0.00 5.68
147 148 3.121030 CCTCTTGCTCCAACCGCG 61.121 66.667 0.00 0.00 0.00 6.46
148 149 2.048222 CTCTTGCTCCAACCGCGA 60.048 61.111 8.23 0.00 0.00 5.87
149 150 1.448540 CTCTTGCTCCAACCGCGAT 60.449 57.895 8.23 0.00 0.00 4.58
150 151 1.003839 TCTTGCTCCAACCGCGATT 60.004 52.632 8.23 0.00 0.00 3.34
151 152 0.605319 TCTTGCTCCAACCGCGATTT 60.605 50.000 8.23 0.00 0.00 2.17
152 153 0.454957 CTTGCTCCAACCGCGATTTG 60.455 55.000 8.23 10.75 0.00 2.32
153 154 1.169661 TTGCTCCAACCGCGATTTGT 61.170 50.000 8.23 0.00 0.00 2.83
154 155 1.154225 GCTCCAACCGCGATTTGTG 60.154 57.895 8.23 6.95 0.00 3.33
160 161 3.508840 CCGCGATTTGTGGCTCCC 61.509 66.667 8.23 0.00 42.37 4.30
161 162 2.745884 CGCGATTTGTGGCTCCCA 60.746 61.111 0.00 0.00 0.00 4.37
162 163 2.114670 CGCGATTTGTGGCTCCCAT 61.115 57.895 0.00 0.00 35.28 4.00
163 164 1.729881 GCGATTTGTGGCTCCCATC 59.270 57.895 0.00 0.00 35.28 3.51
164 165 1.031571 GCGATTTGTGGCTCCCATCA 61.032 55.000 0.00 0.00 35.28 3.07
165 166 0.734889 CGATTTGTGGCTCCCATCAC 59.265 55.000 0.00 0.00 35.28 3.06
166 167 1.106285 GATTTGTGGCTCCCATCACC 58.894 55.000 0.00 0.00 35.28 4.02
167 168 0.680921 ATTTGTGGCTCCCATCACCG 60.681 55.000 0.00 0.00 35.28 4.94
168 169 2.762969 TTTGTGGCTCCCATCACCGG 62.763 60.000 0.00 0.00 35.28 5.28
169 170 3.717294 GTGGCTCCCATCACCGGT 61.717 66.667 0.00 0.00 35.28 5.28
170 171 3.399181 TGGCTCCCATCACCGGTC 61.399 66.667 2.59 0.00 0.00 4.79
171 172 3.399181 GGCTCCCATCACCGGTCA 61.399 66.667 2.59 0.00 0.00 4.02
172 173 2.746375 GGCTCCCATCACCGGTCAT 61.746 63.158 2.59 0.00 0.00 3.06
173 174 1.227674 GCTCCCATCACCGGTCATC 60.228 63.158 2.59 0.00 0.00 2.92
174 175 1.690219 GCTCCCATCACCGGTCATCT 61.690 60.000 2.59 0.00 0.00 2.90
175 176 0.833287 CTCCCATCACCGGTCATCTT 59.167 55.000 2.59 0.00 0.00 2.40
176 177 0.830648 TCCCATCACCGGTCATCTTC 59.169 55.000 2.59 0.00 0.00 2.87
177 178 0.179045 CCCATCACCGGTCATCTTCC 60.179 60.000 2.59 0.00 0.00 3.46
178 179 0.179045 CCATCACCGGTCATCTTCCC 60.179 60.000 2.59 0.00 0.00 3.97
179 180 0.833287 CATCACCGGTCATCTTCCCT 59.167 55.000 2.59 0.00 0.00 4.20
180 181 0.833287 ATCACCGGTCATCTTCCCTG 59.167 55.000 2.59 0.00 0.00 4.45
181 182 0.252057 TCACCGGTCATCTTCCCTGA 60.252 55.000 2.59 0.00 0.00 3.86
182 183 0.833287 CACCGGTCATCTTCCCTGAT 59.167 55.000 2.59 0.00 0.00 2.90
183 184 0.833287 ACCGGTCATCTTCCCTGATG 59.167 55.000 0.00 0.00 43.66 3.07
184 185 0.833287 CCGGTCATCTTCCCTGATGT 59.167 55.000 0.00 0.00 43.03 3.06
185 186 2.039418 CCGGTCATCTTCCCTGATGTA 58.961 52.381 0.00 0.00 43.03 2.29
186 187 2.634940 CCGGTCATCTTCCCTGATGTAT 59.365 50.000 0.00 0.00 43.03 2.29
187 188 3.555795 CCGGTCATCTTCCCTGATGTATG 60.556 52.174 0.00 0.00 43.03 2.39
188 189 3.406764 GGTCATCTTCCCTGATGTATGC 58.593 50.000 0.00 0.00 43.03 3.14
189 190 3.072184 GGTCATCTTCCCTGATGTATGCT 59.928 47.826 0.00 0.00 43.03 3.79
190 191 4.314121 GTCATCTTCCCTGATGTATGCTC 58.686 47.826 0.00 0.00 43.03 4.26
191 192 3.326006 TCATCTTCCCTGATGTATGCTCC 59.674 47.826 0.00 0.00 43.03 4.70
192 193 2.050144 TCTTCCCTGATGTATGCTCCC 58.950 52.381 0.00 0.00 0.00 4.30
193 194 2.053244 CTTCCCTGATGTATGCTCCCT 58.947 52.381 0.00 0.00 0.00 4.20
194 195 1.722034 TCCCTGATGTATGCTCCCTC 58.278 55.000 0.00 0.00 0.00 4.30
195 196 1.062198 TCCCTGATGTATGCTCCCTCA 60.062 52.381 0.00 0.00 0.00 3.86
196 197 1.071385 CCCTGATGTATGCTCCCTCAC 59.929 57.143 0.00 0.00 0.00 3.51
197 198 1.071385 CCTGATGTATGCTCCCTCACC 59.929 57.143 0.00 0.00 0.00 4.02
198 199 1.071385 CTGATGTATGCTCCCTCACCC 59.929 57.143 0.00 0.00 0.00 4.61
199 200 0.034059 GATGTATGCTCCCTCACCCG 59.966 60.000 0.00 0.00 0.00 5.28
200 201 1.410850 ATGTATGCTCCCTCACCCGG 61.411 60.000 0.00 0.00 0.00 5.73
201 202 1.760875 GTATGCTCCCTCACCCGGA 60.761 63.158 0.73 0.00 0.00 5.14
202 203 1.122019 GTATGCTCCCTCACCCGGAT 61.122 60.000 0.73 0.00 0.00 4.18
203 204 0.399949 TATGCTCCCTCACCCGGATT 60.400 55.000 0.73 0.00 0.00 3.01
204 205 1.700042 ATGCTCCCTCACCCGGATTC 61.700 60.000 0.73 0.00 0.00 2.52
205 206 2.815308 CTCCCTCACCCGGATTCG 59.185 66.667 0.73 0.00 0.00 3.34
206 207 2.038329 TCCCTCACCCGGATTCGT 59.962 61.111 0.73 0.00 33.95 3.85
207 208 2.186903 CCCTCACCCGGATTCGTG 59.813 66.667 0.73 1.81 33.95 4.35
208 209 2.355986 CCCTCACCCGGATTCGTGA 61.356 63.158 0.73 7.11 37.44 4.35
210 211 4.107029 TCACCCGGATTCGTGAGT 57.893 55.556 0.73 0.00 34.14 3.41
211 212 1.888018 TCACCCGGATTCGTGAGTC 59.112 57.895 0.73 0.00 34.14 3.36
212 213 0.896479 TCACCCGGATTCGTGAGTCA 60.896 55.000 0.73 0.00 34.14 3.41
213 214 0.458543 CACCCGGATTCGTGAGTCAG 60.459 60.000 0.73 0.00 31.36 3.51
214 215 0.611062 ACCCGGATTCGTGAGTCAGA 60.611 55.000 0.73 0.00 33.95 3.27
215 216 0.747255 CCCGGATTCGTGAGTCAGAT 59.253 55.000 0.73 0.00 33.95 2.90
216 217 1.137086 CCCGGATTCGTGAGTCAGATT 59.863 52.381 0.73 0.00 33.95 2.40
217 218 2.464865 CCGGATTCGTGAGTCAGATTC 58.535 52.381 0.00 0.22 33.95 2.52
218 219 2.159240 CCGGATTCGTGAGTCAGATTCA 60.159 50.000 0.00 0.00 33.95 2.57
219 220 2.854777 CGGATTCGTGAGTCAGATTCAC 59.145 50.000 14.66 14.66 41.14 3.18
223 224 2.755929 GTGAGTCAGATTCACGGCC 58.244 57.895 10.08 0.00 36.01 6.13
224 225 0.247736 GTGAGTCAGATTCACGGCCT 59.752 55.000 10.08 0.00 36.01 5.19
225 226 0.532573 TGAGTCAGATTCACGGCCTC 59.467 55.000 0.00 0.00 0.00 4.70
226 227 0.820871 GAGTCAGATTCACGGCCTCT 59.179 55.000 0.00 0.00 0.00 3.69
227 228 2.025155 GAGTCAGATTCACGGCCTCTA 58.975 52.381 0.00 0.00 0.00 2.43
228 229 2.625790 GAGTCAGATTCACGGCCTCTAT 59.374 50.000 0.00 0.00 0.00 1.98
229 230 3.034635 AGTCAGATTCACGGCCTCTATT 58.965 45.455 0.00 0.00 0.00 1.73
230 231 3.126831 GTCAGATTCACGGCCTCTATTG 58.873 50.000 0.00 0.00 0.00 1.90
231 232 1.869767 CAGATTCACGGCCTCTATTGC 59.130 52.381 0.00 0.00 0.00 3.56
232 233 1.202698 AGATTCACGGCCTCTATTGCC 60.203 52.381 0.00 0.00 45.70 4.52
238 239 2.113986 GCCTCTATTGCCGGCCAT 59.886 61.111 26.77 22.11 37.86 4.40
239 240 1.968540 GCCTCTATTGCCGGCCATC 60.969 63.158 26.77 1.68 37.86 3.51
240 241 1.757306 CCTCTATTGCCGGCCATCT 59.243 57.895 26.77 8.25 0.00 2.90
241 242 0.321122 CCTCTATTGCCGGCCATCTC 60.321 60.000 26.77 0.00 0.00 2.75
242 243 0.321122 CTCTATTGCCGGCCATCTCC 60.321 60.000 26.77 0.00 0.00 3.71
243 244 1.302832 CTATTGCCGGCCATCTCCC 60.303 63.158 26.77 0.00 0.00 4.30
244 245 1.770110 TATTGCCGGCCATCTCCCT 60.770 57.895 26.77 0.00 0.00 4.20
245 246 1.768684 TATTGCCGGCCATCTCCCTC 61.769 60.000 26.77 0.00 0.00 4.30
247 248 4.554036 GCCGGCCATCTCCCTCAC 62.554 72.222 18.11 0.00 0.00 3.51
248 249 3.866582 CCGGCCATCTCCCTCACC 61.867 72.222 2.24 0.00 0.00 4.02
249 250 3.083349 CGGCCATCTCCCTCACCA 61.083 66.667 2.24 0.00 0.00 4.17
250 251 2.446848 CGGCCATCTCCCTCACCAT 61.447 63.158 2.24 0.00 0.00 3.55
251 252 1.150081 GGCCATCTCCCTCACCATG 59.850 63.158 0.00 0.00 0.00 3.66
252 253 1.348008 GGCCATCTCCCTCACCATGA 61.348 60.000 0.00 0.00 0.00 3.07
253 254 0.108207 GCCATCTCCCTCACCATGAG 59.892 60.000 0.00 0.00 43.91 2.90
254 255 0.108207 CCATCTCCCTCACCATGAGC 59.892 60.000 0.00 0.00 42.98 4.26
255 256 0.835276 CATCTCCCTCACCATGAGCA 59.165 55.000 0.00 0.00 42.98 4.26
256 257 0.835941 ATCTCCCTCACCATGAGCAC 59.164 55.000 0.00 0.00 42.98 4.40
257 258 1.222936 CTCCCTCACCATGAGCACC 59.777 63.158 0.00 0.00 42.98 5.01
258 259 2.262774 CTCCCTCACCATGAGCACCC 62.263 65.000 0.00 0.00 42.98 4.61
259 260 2.124983 CCTCACCATGAGCACCCG 60.125 66.667 0.00 0.00 42.98 5.28
260 261 2.821366 CTCACCATGAGCACCCGC 60.821 66.667 0.00 0.00 37.72 6.13
261 262 4.408821 TCACCATGAGCACCCGCC 62.409 66.667 0.00 0.00 39.83 6.13
276 277 4.440127 GCCCCGCCAATGTTGCAG 62.440 66.667 0.00 0.00 0.00 4.41
277 278 3.762247 CCCCGCCAATGTTGCAGG 61.762 66.667 0.00 0.00 0.00 4.85
278 279 2.990967 CCCGCCAATGTTGCAGGT 60.991 61.111 0.00 0.00 0.00 4.00
279 280 2.259204 CCGCCAATGTTGCAGGTG 59.741 61.111 0.00 0.00 0.00 4.00
280 281 2.563798 CCGCCAATGTTGCAGGTGT 61.564 57.895 2.26 0.00 0.00 4.16
281 282 1.372004 CGCCAATGTTGCAGGTGTG 60.372 57.895 0.00 0.00 0.00 3.82
282 283 1.741525 GCCAATGTTGCAGGTGTGT 59.258 52.632 0.00 0.00 0.00 3.72
283 284 0.318955 GCCAATGTTGCAGGTGTGTC 60.319 55.000 0.00 0.00 0.00 3.67
284 285 1.031235 CCAATGTTGCAGGTGTGTCA 58.969 50.000 0.00 0.00 0.00 3.58
285 286 1.269206 CCAATGTTGCAGGTGTGTCAC 60.269 52.381 0.00 0.00 0.00 3.67
286 287 1.677576 CAATGTTGCAGGTGTGTCACT 59.322 47.619 4.27 0.00 34.40 3.41
287 288 2.057137 ATGTTGCAGGTGTGTCACTT 57.943 45.000 4.27 0.00 34.40 3.16
288 289 1.093972 TGTTGCAGGTGTGTCACTTG 58.906 50.000 4.27 7.47 42.97 3.16
291 292 3.333414 CAGGTGTGTCACTTGCCG 58.667 61.111 4.27 0.00 34.91 5.69
292 293 2.591715 AGGTGTGTCACTTGCCGC 60.592 61.111 4.27 0.00 34.40 6.53
293 294 3.660111 GGTGTGTCACTTGCCGCC 61.660 66.667 4.27 0.00 34.40 6.13
294 295 2.899838 GTGTGTCACTTGCCGCCA 60.900 61.111 4.27 0.00 0.00 5.69
295 296 2.591429 TGTGTCACTTGCCGCCAG 60.591 61.111 4.27 0.00 0.00 4.85
296 297 2.280797 GTGTCACTTGCCGCCAGA 60.281 61.111 0.00 0.00 0.00 3.86
297 298 2.280797 TGTCACTTGCCGCCAGAC 60.281 61.111 0.00 0.00 0.00 3.51
298 299 3.050275 GTCACTTGCCGCCAGACC 61.050 66.667 0.00 0.00 0.00 3.85
299 300 3.555324 TCACTTGCCGCCAGACCA 61.555 61.111 0.00 0.00 0.00 4.02
300 301 2.594303 CACTTGCCGCCAGACCAA 60.594 61.111 0.00 0.00 0.00 3.67
301 302 2.192861 CACTTGCCGCCAGACCAAA 61.193 57.895 0.00 0.00 0.00 3.28
302 303 1.228552 ACTTGCCGCCAGACCAAAT 60.229 52.632 0.00 0.00 0.00 2.32
303 304 1.244019 ACTTGCCGCCAGACCAAATC 61.244 55.000 0.00 0.00 0.00 2.17
304 305 1.937546 CTTGCCGCCAGACCAAATCC 61.938 60.000 0.00 0.00 0.00 3.01
305 306 2.361104 GCCGCCAGACCAAATCCA 60.361 61.111 0.00 0.00 0.00 3.41
306 307 2.700773 GCCGCCAGACCAAATCCAC 61.701 63.158 0.00 0.00 0.00 4.02
307 308 1.303236 CCGCCAGACCAAATCCACA 60.303 57.895 0.00 0.00 0.00 4.17
308 309 0.893270 CCGCCAGACCAAATCCACAA 60.893 55.000 0.00 0.00 0.00 3.33
309 310 0.523072 CGCCAGACCAAATCCACAAG 59.477 55.000 0.00 0.00 0.00 3.16
310 311 0.244721 GCCAGACCAAATCCACAAGC 59.755 55.000 0.00 0.00 0.00 4.01
311 312 1.915141 CCAGACCAAATCCACAAGCT 58.085 50.000 0.00 0.00 0.00 3.74
312 313 2.879756 GCCAGACCAAATCCACAAGCTA 60.880 50.000 0.00 0.00 0.00 3.32
313 314 2.749621 CCAGACCAAATCCACAAGCTAC 59.250 50.000 0.00 0.00 0.00 3.58
314 315 3.411446 CAGACCAAATCCACAAGCTACA 58.589 45.455 0.00 0.00 0.00 2.74
315 316 4.012374 CAGACCAAATCCACAAGCTACAT 58.988 43.478 0.00 0.00 0.00 2.29
316 317 4.095483 CAGACCAAATCCACAAGCTACATC 59.905 45.833 0.00 0.00 0.00 3.06
317 318 3.356290 ACCAAATCCACAAGCTACATCC 58.644 45.455 0.00 0.00 0.00 3.51
318 319 3.010584 ACCAAATCCACAAGCTACATCCT 59.989 43.478 0.00 0.00 0.00 3.24
319 320 3.629398 CCAAATCCACAAGCTACATCCTC 59.371 47.826 0.00 0.00 0.00 3.71
320 321 4.521146 CAAATCCACAAGCTACATCCTCT 58.479 43.478 0.00 0.00 0.00 3.69
321 322 4.414337 AATCCACAAGCTACATCCTCTC 57.586 45.455 0.00 0.00 0.00 3.20
322 323 3.107402 TCCACAAGCTACATCCTCTCT 57.893 47.619 0.00 0.00 0.00 3.10
323 324 3.027412 TCCACAAGCTACATCCTCTCTC 58.973 50.000 0.00 0.00 0.00 3.20
324 325 3.030291 CCACAAGCTACATCCTCTCTCT 58.970 50.000 0.00 0.00 0.00 3.10
325 326 3.068024 CCACAAGCTACATCCTCTCTCTC 59.932 52.174 0.00 0.00 0.00 3.20
326 327 3.953612 CACAAGCTACATCCTCTCTCTCT 59.046 47.826 0.00 0.00 0.00 3.10
327 328 4.036734 CACAAGCTACATCCTCTCTCTCTC 59.963 50.000 0.00 0.00 0.00 3.20
328 329 4.079787 ACAAGCTACATCCTCTCTCTCTCT 60.080 45.833 0.00 0.00 0.00 3.10
329 330 4.357918 AGCTACATCCTCTCTCTCTCTC 57.642 50.000 0.00 0.00 0.00 3.20
330 331 3.976654 AGCTACATCCTCTCTCTCTCTCT 59.023 47.826 0.00 0.00 0.00 3.10
331 332 4.040952 AGCTACATCCTCTCTCTCTCTCTC 59.959 50.000 0.00 0.00 0.00 3.20
332 333 4.040952 GCTACATCCTCTCTCTCTCTCTCT 59.959 50.000 0.00 0.00 0.00 3.10
333 334 4.696479 ACATCCTCTCTCTCTCTCTCTC 57.304 50.000 0.00 0.00 0.00 3.20
334 335 4.302067 ACATCCTCTCTCTCTCTCTCTCT 58.698 47.826 0.00 0.00 0.00 3.10
335 336 4.346418 ACATCCTCTCTCTCTCTCTCTCTC 59.654 50.000 0.00 0.00 0.00 3.20
336 337 4.271807 TCCTCTCTCTCTCTCTCTCTCT 57.728 50.000 0.00 0.00 0.00 3.10
337 338 4.219115 TCCTCTCTCTCTCTCTCTCTCTC 58.781 52.174 0.00 0.00 0.00 3.20
338 339 4.078922 TCCTCTCTCTCTCTCTCTCTCTCT 60.079 50.000 0.00 0.00 0.00 3.10
339 340 4.280677 CCTCTCTCTCTCTCTCTCTCTCTC 59.719 54.167 0.00 0.00 0.00 3.20
340 341 5.136068 TCTCTCTCTCTCTCTCTCTCTCT 57.864 47.826 0.00 0.00 0.00 3.10
341 342 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
342 343 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
353 354 3.449918 TCTCTCTCTCTCTCTCTCCACA 58.550 50.000 0.00 0.00 0.00 4.17
367 368 5.745227 TCTCTCCACATGATTTTTCCTACC 58.255 41.667 0.00 0.00 0.00 3.18
370 371 4.258543 TCCACATGATTTTTCCTACCGAC 58.741 43.478 0.00 0.00 0.00 4.79
371 372 3.063452 CCACATGATTTTTCCTACCGACG 59.937 47.826 0.00 0.00 0.00 5.12
373 374 3.055675 ACATGATTTTTCCTACCGACGGA 60.056 43.478 23.38 3.17 0.00 4.69
374 375 3.899052 TGATTTTTCCTACCGACGGAT 57.101 42.857 23.38 7.58 0.00 4.18
377 378 4.632688 TGATTTTTCCTACCGACGGATTTC 59.367 41.667 23.38 4.66 0.00 2.17
391 392 6.367969 CCGACGGATTTCTTCTTCTTCTAAAA 59.632 38.462 8.64 0.00 0.00 1.52
433 435 4.717233 AACAAGTGTCTTGTTGCAATGA 57.283 36.364 21.70 0.00 40.70 2.57
442 444 6.642131 GTGTCTTGTTGCAATGACAATTATGT 59.358 34.615 24.19 0.00 44.25 2.29
455 457 1.788258 ATTATGTCATCGAGCAGGCG 58.212 50.000 0.00 0.00 0.00 5.52
456 458 0.875908 TTATGTCATCGAGCAGGCGC 60.876 55.000 0.00 0.00 38.99 6.53
463 465 4.559229 CGAGCAGGCGCGATGAGA 62.559 66.667 12.10 0.00 45.49 3.27
470 472 2.473816 CAGGCGCGATGAGATTTTCTA 58.526 47.619 12.10 0.00 0.00 2.10
473 475 2.607635 GGCGCGATGAGATTTTCTACAA 59.392 45.455 12.10 0.00 0.00 2.41
493 495 9.653287 TCTACAACAAGATATCTGTTACAAAGG 57.347 33.333 5.86 3.46 0.00 3.11
497 499 9.612620 CAACAAGATATCTGTTACAAAGGTTTC 57.387 33.333 5.86 0.00 0.00 2.78
506 508 7.925993 TCTGTTACAAAGGTTTCTACAACATG 58.074 34.615 0.00 0.00 0.00 3.21
508 510 8.282455 TGTTACAAAGGTTTCTACAACATGAA 57.718 30.769 0.00 0.00 0.00 2.57
512 514 8.237811 ACAAAGGTTTCTACAACATGAATTCT 57.762 30.769 7.05 0.00 0.00 2.40
529 531 6.913170 TGAATTCTGTTGTAAAGGATTCTGC 58.087 36.000 7.05 0.00 0.00 4.26
531 533 6.899393 ATTCTGTTGTAAAGGATTCTGCAA 57.101 33.333 0.00 0.00 0.00 4.08
540 542 7.592938 TGTAAAGGATTCTGCAACATTAACTG 58.407 34.615 0.00 0.00 0.00 3.16
556 558 0.732571 ACTGTGTTGCAACCGTGAAG 59.267 50.000 26.14 17.09 0.00 3.02
559 561 2.335011 GTTGCAACCGTGAAGGGC 59.665 61.111 19.15 0.00 46.96 5.19
577 587 3.869272 GCCGCTTGACCGCATCAG 61.869 66.667 0.00 0.00 38.99 2.90
585 595 1.185315 TGACCGCATCAGATCTGACA 58.815 50.000 27.37 16.35 43.11 3.58
596 606 1.999071 GATCTGACAGCTCGCGACCT 61.999 60.000 3.71 0.00 0.00 3.85
600 610 3.973267 GACAGCTCGCGACCTGACC 62.973 68.421 32.26 20.64 33.40 4.02
624 634 6.302615 CGATCTTTTCGGAATATCAATCTGC 58.697 40.000 0.00 0.00 44.28 4.26
625 635 6.566197 ATCTTTTCGGAATATCAATCTGCC 57.434 37.500 0.00 0.00 0.00 4.85
626 636 4.511454 TCTTTTCGGAATATCAATCTGCCG 59.489 41.667 0.00 0.00 40.06 5.69
627 637 3.744238 TTCGGAATATCAATCTGCCGA 57.256 42.857 0.00 0.00 45.05 5.54
628 638 3.026630 TCGGAATATCAATCTGCCGAC 57.973 47.619 0.00 0.00 42.29 4.79
629 639 1.721389 CGGAATATCAATCTGCCGACG 59.279 52.381 0.00 0.00 41.11 5.12
630 640 1.461127 GGAATATCAATCTGCCGACGC 59.539 52.381 0.00 0.00 0.00 5.19
633 643 1.501169 TATCAATCTGCCGACGCATG 58.499 50.000 0.00 0.00 46.11 4.06
655 665 1.049289 ACGCCCCTTCATACCTCTCC 61.049 60.000 0.00 0.00 0.00 3.71
658 668 0.761802 CCCCTTCATACCTCTCCTGC 59.238 60.000 0.00 0.00 0.00 4.85
664 674 3.953542 TCATACCTCTCCTGCACTAGA 57.046 47.619 0.00 0.00 0.00 2.43
665 675 4.251103 TCATACCTCTCCTGCACTAGAA 57.749 45.455 0.00 0.00 0.00 2.10
701 714 3.667497 AGTACACGCATATCATCCCAG 57.333 47.619 0.00 0.00 0.00 4.45
703 716 2.533266 ACACGCATATCATCCCAGTC 57.467 50.000 0.00 0.00 0.00 3.51
704 717 1.070758 ACACGCATATCATCCCAGTCC 59.929 52.381 0.00 0.00 0.00 3.85
710 723 1.407656 TATCATCCCAGTCCGGTGCC 61.408 60.000 0.00 0.00 0.00 5.01
724 737 2.530151 TGCCAGGCCAACCTCTCT 60.530 61.111 9.64 0.00 46.34 3.10
726 739 2.581354 CCAGGCCAACCTCTCTCG 59.419 66.667 5.01 0.00 46.34 4.04
727 740 2.581354 CAGGCCAACCTCTCTCGG 59.419 66.667 5.01 0.00 46.34 4.63
728 741 1.984570 CAGGCCAACCTCTCTCGGA 60.985 63.158 5.01 0.00 46.34 4.55
729 742 1.684049 AGGCCAACCTCTCTCGGAG 60.684 63.158 5.01 0.00 46.34 4.63
736 749 3.532501 CTCTCTCGGAGGGAAGGC 58.467 66.667 9.23 0.00 38.35 4.35
737 750 2.042843 TCTCTCGGAGGGAAGGCC 60.043 66.667 4.78 0.00 0.00 5.19
738 751 2.042435 CTCTCGGAGGGAAGGCCT 60.042 66.667 0.00 0.00 0.00 5.19
739 752 1.687493 CTCTCGGAGGGAAGGCCTT 60.687 63.158 20.65 20.65 0.00 4.35
740 753 0.397254 CTCTCGGAGGGAAGGCCTTA 60.397 60.000 20.54 0.00 0.00 2.69
741 754 0.264955 TCTCGGAGGGAAGGCCTTAT 59.735 55.000 20.54 7.60 0.00 1.73
742 755 1.132500 CTCGGAGGGAAGGCCTTATT 58.868 55.000 20.54 6.79 0.00 1.40
743 756 1.070914 CTCGGAGGGAAGGCCTTATTC 59.929 57.143 20.54 15.61 0.00 1.75
744 757 0.249911 CGGAGGGAAGGCCTTATTCG 60.250 60.000 20.54 14.32 0.00 3.34
745 758 0.837940 GGAGGGAAGGCCTTATTCGT 59.162 55.000 20.54 12.58 0.00 3.85
746 759 1.202663 GGAGGGAAGGCCTTATTCGTC 60.203 57.143 20.54 19.63 0.00 4.20
747 760 1.763545 GAGGGAAGGCCTTATTCGTCT 59.236 52.381 20.54 9.51 0.00 4.18
748 761 1.763545 AGGGAAGGCCTTATTCGTCTC 59.236 52.381 20.54 4.50 0.00 3.36
749 762 1.538419 GGGAAGGCCTTATTCGTCTCG 60.538 57.143 20.54 0.00 0.00 4.04
750 763 1.538419 GGAAGGCCTTATTCGTCTCGG 60.538 57.143 20.54 0.00 0.00 4.63
751 764 1.407979 GAAGGCCTTATTCGTCTCGGA 59.592 52.381 20.54 0.00 0.00 4.55
752 765 1.033574 AGGCCTTATTCGTCTCGGAG 58.966 55.000 0.00 0.00 0.00 4.63
789 802 1.906333 GGGCAACGGTTGTTCCCAT 60.906 57.895 23.67 0.00 37.68 4.00
822 835 1.466856 TTCTTGTGCCATGCATCCTC 58.533 50.000 0.00 0.00 41.91 3.71
831 844 0.678395 CATGCATCCTCGAGCCTACT 59.322 55.000 6.99 0.00 0.00 2.57
845 858 3.376636 AGCCTACTCCTTTCCCTACTTC 58.623 50.000 0.00 0.00 0.00 3.01
847 860 3.712218 GCCTACTCCTTTCCCTACTTCAT 59.288 47.826 0.00 0.00 0.00 2.57
884 907 5.580998 TCTCACTATATAAATCCGGCTCCT 58.419 41.667 0.00 0.00 0.00 3.69
925 957 1.271379 ACTCCACGAGCGTTATCAACA 59.729 47.619 0.00 0.00 32.04 3.33
928 960 4.202121 ACTCCACGAGCGTTATCAACATAT 60.202 41.667 0.00 0.00 32.04 1.78
930 962 5.458015 TCCACGAGCGTTATCAACATATAG 58.542 41.667 0.00 0.00 0.00 1.31
931 963 4.621460 CCACGAGCGTTATCAACATATAGG 59.379 45.833 0.00 0.00 0.00 2.57
932 964 5.220381 CACGAGCGTTATCAACATATAGGT 58.780 41.667 0.00 0.00 0.00 3.08
933 965 5.690409 CACGAGCGTTATCAACATATAGGTT 59.310 40.000 0.00 0.00 0.00 3.50
944 976 5.043732 TCAACATATAGGTTCCCCCACAATT 60.044 40.000 0.00 0.00 34.66 2.32
1029 1088 2.189499 GGCCAAGATCGCCATGGAC 61.189 63.158 18.40 5.97 46.27 4.02
1062 1121 0.528017 CACTGAGCTGGCTCTTCGTA 59.472 55.000 20.97 2.38 43.12 3.43
1170 1229 0.442310 CGATCGTCGGCAACATGTTT 59.558 50.000 8.77 0.00 36.00 2.83
1179 1238 4.036734 GTCGGCAACATGTTTATGATGGAT 59.963 41.667 8.77 0.00 37.51 3.41
1214 1273 4.232878 CCTGGCGGCTCTGGCTAG 62.233 72.222 11.43 0.00 38.56 3.42
1659 1730 1.130054 TGCAGGAGTTCTCCCAGCTT 61.130 55.000 23.99 4.29 33.93 3.74
1904 2014 2.159819 GACCTGCAGAACTCGCTCCA 62.160 60.000 17.39 0.00 0.00 3.86
1966 2430 4.102054 GGATACCGGAACTCCCATTTCTAA 59.898 45.833 9.46 0.00 34.14 2.10
1967 2431 5.221864 GGATACCGGAACTCCCATTTCTAAT 60.222 44.000 9.46 0.00 34.14 1.73
1969 2433 4.524053 ACCGGAACTCCCATTTCTAATTC 58.476 43.478 9.46 0.00 34.14 2.17
1970 2434 4.018779 ACCGGAACTCCCATTTCTAATTCA 60.019 41.667 9.46 0.00 34.14 2.57
1971 2435 4.335594 CCGGAACTCCCATTTCTAATTCAC 59.664 45.833 0.00 0.00 34.14 3.18
1974 2438 3.886123 ACTCCCATTTCTAATTCACCCG 58.114 45.455 0.00 0.00 0.00 5.28
2028 2496 9.650539 TTAATTTGTTTGATTCATGGTATGGTG 57.349 29.630 0.00 0.00 0.00 4.17
2029 2497 4.717233 TGTTTGATTCATGGTATGGTGC 57.283 40.909 0.00 0.00 0.00 5.01
2038 4233 2.102070 TGGTATGGTGCGGTAAACTG 57.898 50.000 0.00 0.00 0.00 3.16
2041 4236 2.676342 GGTATGGTGCGGTAAACTGAAG 59.324 50.000 0.00 0.00 0.00 3.02
2046 4241 1.937899 GTGCGGTAAACTGAAGTGTGT 59.062 47.619 0.00 0.00 0.00 3.72
2047 4242 3.125316 GTGCGGTAAACTGAAGTGTGTA 58.875 45.455 0.00 0.00 0.00 2.90
2073 4289 0.889186 AGGACGTGATGTTTGGTGGC 60.889 55.000 0.00 0.00 0.00 5.01
2238 4454 3.751175 CCTTCCTCAAGTGCGTAATCAAA 59.249 43.478 0.00 0.00 0.00 2.69
2274 4490 1.829533 CCCGCCCATCCCAATTCTG 60.830 63.158 0.00 0.00 0.00 3.02
2460 4676 1.302033 CGACTTCAAGGGCAGCTGT 60.302 57.895 16.64 0.00 0.00 4.40
2475 4691 0.315251 GCTGTTTTGAGTTCCTGCCC 59.685 55.000 0.00 0.00 0.00 5.36
2686 4902 1.279846 CCCGGCTTACTTACCCTTTGA 59.720 52.381 0.00 0.00 0.00 2.69
2736 4952 2.051579 GACGTCAAGTCGTATGCGCG 62.052 60.000 11.55 0.00 44.21 6.86
2748 4973 2.034423 CGTATGCGCGCACAAAAGTATA 60.034 45.455 39.05 19.59 0.00 1.47
2749 4974 3.362596 CGTATGCGCGCACAAAAGTATAT 60.363 43.478 39.05 19.14 0.00 0.86
2750 4975 3.691049 ATGCGCGCACAAAAGTATATT 57.309 38.095 39.05 13.50 0.00 1.28
2751 4976 3.046285 TGCGCGCACAAAAGTATATTC 57.954 42.857 33.09 0.00 0.00 1.75
2752 4977 2.416893 TGCGCGCACAAAAGTATATTCA 59.583 40.909 33.09 0.00 0.00 2.57
2753 4978 3.064682 TGCGCGCACAAAAGTATATTCAT 59.935 39.130 33.09 0.00 0.00 2.57
2754 4979 4.035017 GCGCGCACAAAAGTATATTCATT 58.965 39.130 29.10 0.00 0.00 2.57
2755 4980 5.201910 GCGCGCACAAAAGTATATTCATTA 58.798 37.500 29.10 0.00 0.00 1.90
2756 4981 5.851177 GCGCGCACAAAAGTATATTCATTAT 59.149 36.000 29.10 0.00 0.00 1.28
2802 5027 6.863645 CACTCGATTCAGGGTAACACTATATG 59.136 42.308 0.00 0.00 39.74 1.78
2810 5035 9.596308 TTCAGGGTAACACTATATGAGCTTATA 57.404 33.333 0.02 0.02 39.74 0.98
2811 5036 9.769677 TCAGGGTAACACTATATGAGCTTATAT 57.230 33.333 14.72 14.72 39.74 0.86
2832 5057 1.520666 GACGACGGGTCCATGGATT 59.479 57.895 19.62 2.52 39.90 3.01
2927 5152 4.135153 CAGCTCCGTCCACTCCCG 62.135 72.222 0.00 0.00 0.00 5.14
3255 5511 2.967745 TGTGTTCATCCATGTCCCAA 57.032 45.000 0.00 0.00 0.00 4.12
3284 5548 0.321671 CCACCACCTTCATCTCACGT 59.678 55.000 0.00 0.00 0.00 4.49
3395 5659 7.233962 TGGGAGAAACAACTACATACAGTTCTA 59.766 37.037 0.00 0.00 36.61 2.10
3404 5668 1.927174 CATACAGTTCTACAGCGCCAC 59.073 52.381 2.29 0.00 0.00 5.01
3454 5718 1.985159 TCTACTGCCATGTCCCACTTT 59.015 47.619 0.00 0.00 0.00 2.66
3532 5796 0.868406 GCTCTTCCTCCACAAACACG 59.132 55.000 0.00 0.00 0.00 4.49
3623 5887 1.832608 CCAGCCATGCATCAGCCAT 60.833 57.895 13.38 0.00 41.13 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.998913 TCAGCTGGTTGGTATCAATCA 57.001 42.857 15.13 0.86 41.28 2.57
1 2 5.643379 TTTTCAGCTGGTTGGTATCAATC 57.357 39.130 15.13 0.00 35.10 2.67
2 3 5.304101 TGTTTTTCAGCTGGTTGGTATCAAT 59.696 36.000 15.13 0.00 35.10 2.57
3 4 4.646945 TGTTTTTCAGCTGGTTGGTATCAA 59.353 37.500 15.13 0.00 0.00 2.57
4 5 4.211125 TGTTTTTCAGCTGGTTGGTATCA 58.789 39.130 15.13 1.15 0.00 2.15
5 6 4.846779 TGTTTTTCAGCTGGTTGGTATC 57.153 40.909 15.13 0.00 0.00 2.24
6 7 5.806654 ATTGTTTTTCAGCTGGTTGGTAT 57.193 34.783 15.13 0.00 0.00 2.73
7 8 5.606348 AATTGTTTTTCAGCTGGTTGGTA 57.394 34.783 15.13 0.00 0.00 3.25
8 9 4.486125 AATTGTTTTTCAGCTGGTTGGT 57.514 36.364 15.13 0.00 0.00 3.67
9 10 4.035441 CCAAATTGTTTTTCAGCTGGTTGG 59.965 41.667 15.13 9.58 0.00 3.77
10 11 4.496175 GCCAAATTGTTTTTCAGCTGGTTG 60.496 41.667 15.13 4.81 0.00 3.77
11 12 3.627123 GCCAAATTGTTTTTCAGCTGGTT 59.373 39.130 15.13 0.00 0.00 3.67
12 13 3.205338 GCCAAATTGTTTTTCAGCTGGT 58.795 40.909 15.13 0.00 0.00 4.00
13 14 2.221517 CGCCAAATTGTTTTTCAGCTGG 59.778 45.455 15.13 0.00 0.00 4.85
14 15 2.348779 GCGCCAAATTGTTTTTCAGCTG 60.349 45.455 7.63 7.63 0.00 4.24
15 16 1.866601 GCGCCAAATTGTTTTTCAGCT 59.133 42.857 0.00 0.00 0.00 4.24
16 17 1.069973 GGCGCCAAATTGTTTTTCAGC 60.070 47.619 24.80 0.00 0.00 4.26
17 18 1.192090 CGGCGCCAAATTGTTTTTCAG 59.808 47.619 28.98 0.00 0.00 3.02
18 19 1.212616 CGGCGCCAAATTGTTTTTCA 58.787 45.000 28.98 0.00 0.00 2.69
19 20 0.510790 CCGGCGCCAAATTGTTTTTC 59.489 50.000 28.98 0.00 0.00 2.29
20 21 0.179070 ACCGGCGCCAAATTGTTTTT 60.179 45.000 28.98 0.00 0.00 1.94
21 22 0.598942 GACCGGCGCCAAATTGTTTT 60.599 50.000 28.98 0.00 0.00 2.43
22 23 1.006688 GACCGGCGCCAAATTGTTT 60.007 52.632 28.98 0.00 0.00 2.83
23 24 2.648454 GACCGGCGCCAAATTGTT 59.352 55.556 28.98 0.00 0.00 2.83
24 25 3.732892 CGACCGGCGCCAAATTGT 61.733 61.111 28.98 14.62 0.00 2.71
25 26 3.661025 GACGACCGGCGCCAAATTG 62.661 63.158 28.98 16.73 46.04 2.32
26 27 3.428282 GACGACCGGCGCCAAATT 61.428 61.111 28.98 6.51 46.04 1.82
27 28 4.388499 AGACGACCGGCGCCAAAT 62.388 61.111 28.98 11.04 46.04 2.32
34 35 2.156051 AACTGAAGGAGACGACCGGC 62.156 60.000 0.00 0.00 34.73 6.13
35 36 0.388649 CAACTGAAGGAGACGACCGG 60.389 60.000 0.00 0.00 34.73 5.28
36 37 1.009389 GCAACTGAAGGAGACGACCG 61.009 60.000 0.00 0.00 34.73 4.79
37 38 0.670854 GGCAACTGAAGGAGACGACC 60.671 60.000 0.00 0.00 0.00 4.79
38 39 0.033504 TGGCAACTGAAGGAGACGAC 59.966 55.000 0.00 0.00 37.61 4.34
39 40 0.033504 GTGGCAACTGAAGGAGACGA 59.966 55.000 0.00 0.00 37.61 4.20
40 41 1.284982 CGTGGCAACTGAAGGAGACG 61.285 60.000 0.00 0.00 37.61 4.18
41 42 1.569479 GCGTGGCAACTGAAGGAGAC 61.569 60.000 0.00 0.00 37.61 3.36
42 43 1.301716 GCGTGGCAACTGAAGGAGA 60.302 57.895 0.00 0.00 37.61 3.71
43 44 2.671177 CGCGTGGCAACTGAAGGAG 61.671 63.158 0.00 0.00 37.61 3.69
44 45 2.664851 CGCGTGGCAACTGAAGGA 60.665 61.111 0.00 0.00 37.61 3.36
45 46 2.954753 GACGCGTGGCAACTGAAGG 61.955 63.158 20.70 0.00 37.61 3.46
46 47 2.551270 GACGCGTGGCAACTGAAG 59.449 61.111 20.70 0.00 37.61 3.02
47 48 2.970324 GGACGCGTGGCAACTGAA 60.970 61.111 20.70 0.00 37.61 3.02
71 72 5.420409 AGAAAGAGATAAGGTTGCGGTAAG 58.580 41.667 0.00 0.00 0.00 2.34
72 73 5.416271 AGAAAGAGATAAGGTTGCGGTAA 57.584 39.130 0.00 0.00 0.00 2.85
73 74 5.187186 AGAAGAAAGAGATAAGGTTGCGGTA 59.813 40.000 0.00 0.00 0.00 4.02
74 75 3.983044 AGAAAGAGATAAGGTTGCGGT 57.017 42.857 0.00 0.00 0.00 5.68
75 76 4.508662 AGAAGAAAGAGATAAGGTTGCGG 58.491 43.478 0.00 0.00 0.00 5.69
76 77 5.672321 GCAAGAAGAAAGAGATAAGGTTGCG 60.672 44.000 0.00 0.00 0.00 4.85
77 78 5.392487 GGCAAGAAGAAAGAGATAAGGTTGC 60.392 44.000 0.00 0.00 36.65 4.17
78 79 5.942826 AGGCAAGAAGAAAGAGATAAGGTTG 59.057 40.000 0.00 0.00 0.00 3.77
79 80 6.012945 AGAGGCAAGAAGAAAGAGATAAGGTT 60.013 38.462 0.00 0.00 0.00 3.50
80 81 5.487131 AGAGGCAAGAAGAAAGAGATAAGGT 59.513 40.000 0.00 0.00 0.00 3.50
81 82 5.988287 AGAGGCAAGAAGAAAGAGATAAGG 58.012 41.667 0.00 0.00 0.00 2.69
82 83 7.330262 AGAAGAGGCAAGAAGAAAGAGATAAG 58.670 38.462 0.00 0.00 0.00 1.73
83 84 7.251321 AGAAGAGGCAAGAAGAAAGAGATAA 57.749 36.000 0.00 0.00 0.00 1.75
84 85 6.865834 AGAAGAGGCAAGAAGAAAGAGATA 57.134 37.500 0.00 0.00 0.00 1.98
85 86 5.760484 AGAAGAGGCAAGAAGAAAGAGAT 57.240 39.130 0.00 0.00 0.00 2.75
86 87 5.512232 GGAAGAAGAGGCAAGAAGAAAGAGA 60.512 44.000 0.00 0.00 0.00 3.10
87 88 4.694982 GGAAGAAGAGGCAAGAAGAAAGAG 59.305 45.833 0.00 0.00 0.00 2.85
88 89 4.505742 GGGAAGAAGAGGCAAGAAGAAAGA 60.506 45.833 0.00 0.00 0.00 2.52
89 90 3.755905 GGGAAGAAGAGGCAAGAAGAAAG 59.244 47.826 0.00 0.00 0.00 2.62
90 91 3.498661 GGGGAAGAAGAGGCAAGAAGAAA 60.499 47.826 0.00 0.00 0.00 2.52
91 92 2.040412 GGGGAAGAAGAGGCAAGAAGAA 59.960 50.000 0.00 0.00 0.00 2.52
92 93 1.630878 GGGGAAGAAGAGGCAAGAAGA 59.369 52.381 0.00 0.00 0.00 2.87
93 94 1.677217 CGGGGAAGAAGAGGCAAGAAG 60.677 57.143 0.00 0.00 0.00 2.85
94 95 0.324943 CGGGGAAGAAGAGGCAAGAA 59.675 55.000 0.00 0.00 0.00 2.52
95 96 1.983224 CGGGGAAGAAGAGGCAAGA 59.017 57.895 0.00 0.00 0.00 3.02
96 97 1.746991 GCGGGGAAGAAGAGGCAAG 60.747 63.158 0.00 0.00 0.00 4.01
97 98 2.224159 AGCGGGGAAGAAGAGGCAA 61.224 57.895 0.00 0.00 0.00 4.52
98 99 2.607750 AGCGGGGAAGAAGAGGCA 60.608 61.111 0.00 0.00 0.00 4.75
99 100 2.124942 CAGCGGGGAAGAAGAGGC 60.125 66.667 0.00 0.00 0.00 4.70
100 101 2.586792 CCAGCGGGGAAGAAGAGG 59.413 66.667 0.00 0.00 40.01 3.69
101 102 2.124942 GCCAGCGGGGAAGAAGAG 60.125 66.667 4.64 0.00 40.01 2.85
102 103 2.300967 ATGCCAGCGGGGAAGAAGA 61.301 57.895 0.00 0.00 38.38 2.87
103 104 2.117156 CATGCCAGCGGGGAAGAAG 61.117 63.158 0.00 0.00 38.38 2.85
104 105 2.045045 CATGCCAGCGGGGAAGAA 60.045 61.111 0.00 0.00 38.38 2.52
105 106 4.802051 GCATGCCAGCGGGGAAGA 62.802 66.667 6.36 0.00 38.38 2.87
110 111 4.424566 GTTGTGCATGCCAGCGGG 62.425 66.667 16.68 0.00 37.31 6.13
111 112 4.424566 GGTTGTGCATGCCAGCGG 62.425 66.667 16.68 0.00 37.31 5.52
112 113 3.332493 GAGGTTGTGCATGCCAGCG 62.332 63.158 16.68 0.00 37.31 5.18
113 114 2.570181 GAGGTTGTGCATGCCAGC 59.430 61.111 16.68 14.07 0.00 4.85
114 115 1.303888 AGGAGGTTGTGCATGCCAG 60.304 57.895 16.68 0.00 0.00 4.85
115 116 1.303561 GAGGAGGTTGTGCATGCCA 60.304 57.895 16.68 10.08 0.00 4.92
116 117 0.610232 AAGAGGAGGTTGTGCATGCC 60.610 55.000 16.68 7.25 0.00 4.40
117 118 0.524862 CAAGAGGAGGTTGTGCATGC 59.475 55.000 11.82 11.82 0.00 4.06
118 119 0.524862 GCAAGAGGAGGTTGTGCATG 59.475 55.000 0.00 0.00 35.28 4.06
119 120 0.403271 AGCAAGAGGAGGTTGTGCAT 59.597 50.000 0.00 0.00 37.68 3.96
120 121 0.250467 GAGCAAGAGGAGGTTGTGCA 60.250 55.000 0.00 0.00 37.68 4.57
121 122 0.957888 GGAGCAAGAGGAGGTTGTGC 60.958 60.000 0.00 0.00 35.41 4.57
122 123 0.397941 TGGAGCAAGAGGAGGTTGTG 59.602 55.000 0.00 0.00 0.00 3.33
123 124 1.140312 TTGGAGCAAGAGGAGGTTGT 58.860 50.000 0.00 0.00 0.00 3.32
124 125 1.528129 GTTGGAGCAAGAGGAGGTTG 58.472 55.000 0.00 0.00 0.00 3.77
125 126 0.402121 GGTTGGAGCAAGAGGAGGTT 59.598 55.000 0.00 0.00 0.00 3.50
126 127 1.831652 CGGTTGGAGCAAGAGGAGGT 61.832 60.000 0.00 0.00 0.00 3.85
127 128 1.078848 CGGTTGGAGCAAGAGGAGG 60.079 63.158 0.00 0.00 0.00 4.30
128 129 1.743252 GCGGTTGGAGCAAGAGGAG 60.743 63.158 0.00 0.00 34.19 3.69
129 130 2.347490 GCGGTTGGAGCAAGAGGA 59.653 61.111 0.00 0.00 34.19 3.71
130 131 2.859273 ATCGCGGTTGGAGCAAGAGG 62.859 60.000 6.13 0.00 34.19 3.69
131 132 1.021390 AATCGCGGTTGGAGCAAGAG 61.021 55.000 2.46 0.00 34.19 2.85
132 133 0.605319 AAATCGCGGTTGGAGCAAGA 60.605 50.000 4.83 0.00 34.19 3.02
133 134 0.454957 CAAATCGCGGTTGGAGCAAG 60.455 55.000 4.83 0.00 34.19 4.01
134 135 1.169661 ACAAATCGCGGTTGGAGCAA 61.170 50.000 14.79 0.00 34.19 3.91
135 136 1.599518 ACAAATCGCGGTTGGAGCA 60.600 52.632 14.79 0.00 34.19 4.26
136 137 1.154225 CACAAATCGCGGTTGGAGC 60.154 57.895 14.79 0.00 0.00 4.70
137 138 1.501741 CCACAAATCGCGGTTGGAG 59.498 57.895 14.79 5.01 0.00 3.86
138 139 2.622011 GCCACAAATCGCGGTTGGA 61.622 57.895 14.79 0.00 0.00 3.53
139 140 2.126502 GCCACAAATCGCGGTTGG 60.127 61.111 21.91 15.62 0.00 3.77
140 141 1.154225 GAGCCACAAATCGCGGTTG 60.154 57.895 4.83 13.56 0.00 3.77
141 142 2.332654 GGAGCCACAAATCGCGGTT 61.333 57.895 6.13 0.56 0.00 4.44
142 143 2.746277 GGAGCCACAAATCGCGGT 60.746 61.111 6.13 0.00 0.00 5.68
143 144 3.508840 GGGAGCCACAAATCGCGG 61.509 66.667 6.13 0.00 0.00 6.46
144 145 2.051804 GATGGGAGCCACAAATCGCG 62.052 60.000 0.00 0.00 35.80 5.87
145 146 1.031571 TGATGGGAGCCACAAATCGC 61.032 55.000 0.00 0.00 35.80 4.58
146 147 0.734889 GTGATGGGAGCCACAAATCG 59.265 55.000 0.00 0.00 35.80 3.34
147 148 1.106285 GGTGATGGGAGCCACAAATC 58.894 55.000 0.00 0.00 35.80 2.17
148 149 0.680921 CGGTGATGGGAGCCACAAAT 60.681 55.000 0.00 0.00 35.80 2.32
149 150 1.303236 CGGTGATGGGAGCCACAAA 60.303 57.895 0.00 0.00 35.80 2.83
150 151 2.350895 CGGTGATGGGAGCCACAA 59.649 61.111 0.00 0.00 35.80 3.33
151 152 3.716195 CCGGTGATGGGAGCCACA 61.716 66.667 0.00 0.00 35.80 4.17
152 153 3.682292 GACCGGTGATGGGAGCCAC 62.682 68.421 14.63 0.00 35.80 5.01
153 154 3.399181 GACCGGTGATGGGAGCCA 61.399 66.667 14.63 0.00 38.19 4.75
154 155 2.666596 GATGACCGGTGATGGGAGCC 62.667 65.000 14.63 0.00 0.00 4.70
155 156 1.227674 GATGACCGGTGATGGGAGC 60.228 63.158 14.63 0.00 0.00 4.70
156 157 0.833287 AAGATGACCGGTGATGGGAG 59.167 55.000 14.63 0.00 0.00 4.30
157 158 0.830648 GAAGATGACCGGTGATGGGA 59.169 55.000 14.63 0.00 0.00 4.37
158 159 0.179045 GGAAGATGACCGGTGATGGG 60.179 60.000 14.63 0.00 0.00 4.00
159 160 0.179045 GGGAAGATGACCGGTGATGG 60.179 60.000 14.63 0.00 0.00 3.51
160 161 0.833287 AGGGAAGATGACCGGTGATG 59.167 55.000 14.63 0.00 0.00 3.07
161 162 0.833287 CAGGGAAGATGACCGGTGAT 59.167 55.000 14.63 10.10 0.00 3.06
162 163 0.252057 TCAGGGAAGATGACCGGTGA 60.252 55.000 14.63 2.52 0.00 4.02
163 164 0.833287 ATCAGGGAAGATGACCGGTG 59.167 55.000 14.63 0.00 0.00 4.94
164 165 0.833287 CATCAGGGAAGATGACCGGT 59.167 55.000 6.92 6.92 46.51 5.28
165 166 0.833287 ACATCAGGGAAGATGACCGG 59.167 55.000 10.59 0.00 46.51 5.28
166 167 3.657634 CATACATCAGGGAAGATGACCG 58.342 50.000 10.59 0.00 46.51 4.79
167 168 3.072184 AGCATACATCAGGGAAGATGACC 59.928 47.826 10.59 0.00 46.51 4.02
168 169 4.314121 GAGCATACATCAGGGAAGATGAC 58.686 47.826 10.59 0.00 46.51 3.06
169 170 3.326006 GGAGCATACATCAGGGAAGATGA 59.674 47.826 10.59 0.00 46.51 2.92
171 172 2.641815 GGGAGCATACATCAGGGAAGAT 59.358 50.000 0.00 0.00 0.00 2.40
172 173 2.050144 GGGAGCATACATCAGGGAAGA 58.950 52.381 0.00 0.00 0.00 2.87
173 174 2.038295 GAGGGAGCATACATCAGGGAAG 59.962 54.545 0.00 0.00 0.00 3.46
174 175 2.050144 GAGGGAGCATACATCAGGGAA 58.950 52.381 0.00 0.00 0.00 3.97
175 176 1.062198 TGAGGGAGCATACATCAGGGA 60.062 52.381 0.00 0.00 0.00 4.20
176 177 1.071385 GTGAGGGAGCATACATCAGGG 59.929 57.143 0.00 0.00 0.00 4.45
177 178 1.071385 GGTGAGGGAGCATACATCAGG 59.929 57.143 0.00 0.00 0.00 3.86
178 179 1.071385 GGGTGAGGGAGCATACATCAG 59.929 57.143 0.00 0.00 0.00 2.90
179 180 1.131638 GGGTGAGGGAGCATACATCA 58.868 55.000 0.00 0.00 0.00 3.07
180 181 0.034059 CGGGTGAGGGAGCATACATC 59.966 60.000 0.00 0.00 0.00 3.06
181 182 1.410850 CCGGGTGAGGGAGCATACAT 61.411 60.000 0.00 0.00 0.00 2.29
182 183 2.063979 CCGGGTGAGGGAGCATACA 61.064 63.158 0.00 0.00 0.00 2.29
183 184 1.122019 ATCCGGGTGAGGGAGCATAC 61.122 60.000 0.00 0.00 36.91 2.39
184 185 0.399949 AATCCGGGTGAGGGAGCATA 60.400 55.000 0.00 0.00 36.91 3.14
185 186 1.694169 AATCCGGGTGAGGGAGCAT 60.694 57.895 0.00 0.00 36.91 3.79
186 187 2.285368 AATCCGGGTGAGGGAGCA 60.285 61.111 0.00 0.00 36.91 4.26
187 188 2.506472 GAATCCGGGTGAGGGAGC 59.494 66.667 0.00 0.00 36.91 4.70
188 189 2.058595 ACGAATCCGGGTGAGGGAG 61.059 63.158 0.00 0.00 40.78 4.30
189 190 2.038329 ACGAATCCGGGTGAGGGA 59.962 61.111 0.00 0.00 40.78 4.20
190 191 2.186903 CACGAATCCGGGTGAGGG 59.813 66.667 0.00 0.00 40.78 4.30
191 192 3.294750 TCACGAATCCGGGTGAGG 58.705 61.111 0.00 0.00 40.74 3.86
193 194 0.896479 TGACTCACGAATCCGGGTGA 60.896 55.000 0.00 6.34 40.74 4.02
194 195 0.458543 CTGACTCACGAATCCGGGTG 60.459 60.000 0.00 1.11 40.74 4.61
195 196 0.611062 TCTGACTCACGAATCCGGGT 60.611 55.000 0.00 0.00 40.74 5.28
196 197 0.747255 ATCTGACTCACGAATCCGGG 59.253 55.000 0.00 0.00 41.41 5.73
197 198 2.159240 TGAATCTGACTCACGAATCCGG 60.159 50.000 0.00 0.00 40.78 5.14
198 199 2.854777 GTGAATCTGACTCACGAATCCG 59.145 50.000 3.29 0.00 42.50 4.18
205 206 0.247736 AGGCCGTGAATCTGACTCAC 59.752 55.000 9.09 9.09 39.89 3.51
206 207 0.532573 GAGGCCGTGAATCTGACTCA 59.467 55.000 0.00 0.00 35.81 3.41
207 208 0.820871 AGAGGCCGTGAATCTGACTC 59.179 55.000 0.00 0.00 35.95 3.36
208 209 2.145397 TAGAGGCCGTGAATCTGACT 57.855 50.000 0.00 0.00 0.00 3.41
209 210 3.126831 CAATAGAGGCCGTGAATCTGAC 58.873 50.000 0.00 0.00 0.00 3.51
210 211 2.483714 GCAATAGAGGCCGTGAATCTGA 60.484 50.000 0.00 0.00 0.00 3.27
211 212 1.869767 GCAATAGAGGCCGTGAATCTG 59.130 52.381 0.00 0.00 0.00 2.90
212 213 1.202698 GGCAATAGAGGCCGTGAATCT 60.203 52.381 0.00 0.00 42.39 2.40
213 214 1.230324 GGCAATAGAGGCCGTGAATC 58.770 55.000 0.00 0.00 42.39 2.52
214 215 3.403936 GGCAATAGAGGCCGTGAAT 57.596 52.632 0.00 0.00 42.39 2.57
215 216 4.954933 GGCAATAGAGGCCGTGAA 57.045 55.556 0.00 0.00 42.39 3.18
222 223 0.321122 GAGATGGCCGGCAATAGAGG 60.321 60.000 30.85 0.00 0.00 3.69
223 224 0.321122 GGAGATGGCCGGCAATAGAG 60.321 60.000 30.85 0.00 0.00 2.43
224 225 1.754745 GGAGATGGCCGGCAATAGA 59.245 57.895 30.85 6.26 0.00 1.98
225 226 1.302832 GGGAGATGGCCGGCAATAG 60.303 63.158 30.85 0.00 0.00 1.73
226 227 1.768684 GAGGGAGATGGCCGGCAATA 61.769 60.000 30.85 14.69 0.00 1.90
227 228 3.099170 AGGGAGATGGCCGGCAAT 61.099 61.111 30.85 25.27 0.00 3.56
228 229 3.797353 GAGGGAGATGGCCGGCAA 61.797 66.667 30.85 20.37 0.00 4.52
230 231 4.554036 GTGAGGGAGATGGCCGGC 62.554 72.222 21.18 21.18 0.00 6.13
231 232 3.866582 GGTGAGGGAGATGGCCGG 61.867 72.222 0.00 0.00 0.00 6.13
232 233 2.446848 ATGGTGAGGGAGATGGCCG 61.447 63.158 0.00 0.00 0.00 6.13
233 234 1.150081 CATGGTGAGGGAGATGGCC 59.850 63.158 0.00 0.00 0.00 5.36
234 235 0.108207 CTCATGGTGAGGGAGATGGC 59.892 60.000 0.00 0.00 40.71 4.40
235 236 0.108207 GCTCATGGTGAGGGAGATGG 59.892 60.000 8.85 0.00 44.43 3.51
236 237 0.835276 TGCTCATGGTGAGGGAGATG 59.165 55.000 8.85 0.00 44.43 2.90
237 238 0.835941 GTGCTCATGGTGAGGGAGAT 59.164 55.000 8.85 0.00 44.43 2.75
238 239 1.267574 GGTGCTCATGGTGAGGGAGA 61.268 60.000 8.85 0.00 44.43 3.71
239 240 1.222936 GGTGCTCATGGTGAGGGAG 59.777 63.158 8.85 0.00 44.43 4.30
240 241 2.300967 GGGTGCTCATGGTGAGGGA 61.301 63.158 8.85 0.00 44.43 4.20
241 242 2.273449 GGGTGCTCATGGTGAGGG 59.727 66.667 8.85 0.00 44.43 4.30
242 243 2.124983 CGGGTGCTCATGGTGAGG 60.125 66.667 8.85 0.00 44.43 3.86
243 244 2.821366 GCGGGTGCTCATGGTGAG 60.821 66.667 2.65 2.65 46.90 3.51
244 245 4.408821 GGCGGGTGCTCATGGTGA 62.409 66.667 0.00 0.00 42.25 4.02
259 260 4.440127 CTGCAACATTGGCGGGGC 62.440 66.667 0.00 0.00 33.98 5.80
262 263 2.259204 CACCTGCAACATTGGCGG 59.741 61.111 0.00 0.00 37.39 6.13
263 264 1.372004 CACACCTGCAACATTGGCG 60.372 57.895 0.00 0.00 0.00 5.69
264 265 0.318955 GACACACCTGCAACATTGGC 60.319 55.000 0.00 0.00 0.00 4.52
265 266 1.031235 TGACACACCTGCAACATTGG 58.969 50.000 0.00 0.00 0.00 3.16
266 267 1.677576 AGTGACACACCTGCAACATTG 59.322 47.619 8.59 0.00 34.49 2.82
267 268 2.057137 AGTGACACACCTGCAACATT 57.943 45.000 8.59 0.00 34.49 2.71
268 269 1.677576 CAAGTGACACACCTGCAACAT 59.322 47.619 8.59 0.00 34.49 2.71
269 270 1.093972 CAAGTGACACACCTGCAACA 58.906 50.000 8.59 0.00 34.49 3.33
270 271 3.924238 CAAGTGACACACCTGCAAC 57.076 52.632 8.59 0.00 34.49 4.17
274 275 2.896801 GCGGCAAGTGACACACCTG 61.897 63.158 8.59 3.33 34.49 4.00
275 276 2.591715 GCGGCAAGTGACACACCT 60.592 61.111 8.59 0.00 34.49 4.00
276 277 3.660111 GGCGGCAAGTGACACACC 61.660 66.667 8.59 5.35 34.49 4.16
277 278 2.896801 CTGGCGGCAAGTGACACAC 61.897 63.158 14.48 0.00 34.10 3.82
278 279 2.591429 CTGGCGGCAAGTGACACA 60.591 61.111 14.48 0.00 0.00 3.72
279 280 2.280797 TCTGGCGGCAAGTGACAC 60.281 61.111 14.48 0.00 0.00 3.67
280 281 2.280797 GTCTGGCGGCAAGTGACA 60.281 61.111 20.44 0.00 0.00 3.58
281 282 3.050275 GGTCTGGCGGCAAGTGAC 61.050 66.667 14.48 16.67 0.00 3.67
282 283 2.616797 TTTGGTCTGGCGGCAAGTGA 62.617 55.000 14.48 3.89 0.00 3.41
283 284 1.526575 ATTTGGTCTGGCGGCAAGTG 61.527 55.000 14.48 0.95 0.00 3.16
284 285 1.228552 ATTTGGTCTGGCGGCAAGT 60.229 52.632 14.48 0.00 0.00 3.16
285 286 1.508088 GATTTGGTCTGGCGGCAAG 59.492 57.895 14.48 7.62 0.00 4.01
286 287 1.976474 GGATTTGGTCTGGCGGCAA 60.976 57.895 14.48 0.99 0.00 4.52
287 288 2.361104 GGATTTGGTCTGGCGGCA 60.361 61.111 12.58 12.58 0.00 5.69
288 289 2.361104 TGGATTTGGTCTGGCGGC 60.361 61.111 0.00 0.00 0.00 6.53
289 290 0.893270 TTGTGGATTTGGTCTGGCGG 60.893 55.000 0.00 0.00 0.00 6.13
290 291 0.523072 CTTGTGGATTTGGTCTGGCG 59.477 55.000 0.00 0.00 0.00 5.69
291 292 0.244721 GCTTGTGGATTTGGTCTGGC 59.755 55.000 0.00 0.00 0.00 4.85
292 293 1.915141 AGCTTGTGGATTTGGTCTGG 58.085 50.000 0.00 0.00 0.00 3.86
293 294 3.411446 TGTAGCTTGTGGATTTGGTCTG 58.589 45.455 0.00 0.00 0.00 3.51
294 295 3.788227 TGTAGCTTGTGGATTTGGTCT 57.212 42.857 0.00 0.00 0.00 3.85
295 296 3.378427 GGATGTAGCTTGTGGATTTGGTC 59.622 47.826 0.00 0.00 0.00 4.02
296 297 3.010584 AGGATGTAGCTTGTGGATTTGGT 59.989 43.478 0.00 0.00 0.00 3.67
297 298 3.624777 AGGATGTAGCTTGTGGATTTGG 58.375 45.455 0.00 0.00 0.00 3.28
298 299 4.521146 AGAGGATGTAGCTTGTGGATTTG 58.479 43.478 0.00 0.00 0.00 2.32
299 300 4.472833 AGAGAGGATGTAGCTTGTGGATTT 59.527 41.667 0.00 0.00 0.00 2.17
300 301 4.036518 AGAGAGGATGTAGCTTGTGGATT 58.963 43.478 0.00 0.00 0.00 3.01
301 302 3.640967 GAGAGAGGATGTAGCTTGTGGAT 59.359 47.826 0.00 0.00 0.00 3.41
302 303 3.027412 GAGAGAGGATGTAGCTTGTGGA 58.973 50.000 0.00 0.00 0.00 4.02
303 304 3.030291 AGAGAGAGGATGTAGCTTGTGG 58.970 50.000 0.00 0.00 0.00 4.17
304 305 3.953612 AGAGAGAGAGGATGTAGCTTGTG 59.046 47.826 0.00 0.00 0.00 3.33
305 306 4.079787 AGAGAGAGAGAGGATGTAGCTTGT 60.080 45.833 0.00 0.00 0.00 3.16
306 307 4.464008 AGAGAGAGAGAGGATGTAGCTTG 58.536 47.826 0.00 0.00 0.00 4.01
307 308 4.413520 AGAGAGAGAGAGAGGATGTAGCTT 59.586 45.833 0.00 0.00 0.00 3.74
308 309 3.976654 AGAGAGAGAGAGAGGATGTAGCT 59.023 47.826 0.00 0.00 0.00 3.32
309 310 4.040952 AGAGAGAGAGAGAGAGGATGTAGC 59.959 50.000 0.00 0.00 0.00 3.58
310 311 5.541868 AGAGAGAGAGAGAGAGAGGATGTAG 59.458 48.000 0.00 0.00 0.00 2.74
311 312 5.467738 AGAGAGAGAGAGAGAGAGGATGTA 58.532 45.833 0.00 0.00 0.00 2.29
312 313 4.302067 AGAGAGAGAGAGAGAGAGGATGT 58.698 47.826 0.00 0.00 0.00 3.06
313 314 4.592351 AGAGAGAGAGAGAGAGAGAGGATG 59.408 50.000 0.00 0.00 0.00 3.51
314 315 4.825445 AGAGAGAGAGAGAGAGAGAGGAT 58.175 47.826 0.00 0.00 0.00 3.24
315 316 4.078922 AGAGAGAGAGAGAGAGAGAGAGGA 60.079 50.000 0.00 0.00 0.00 3.71
316 317 4.222336 AGAGAGAGAGAGAGAGAGAGAGG 58.778 52.174 0.00 0.00 0.00 3.69
317 318 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
318 319 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
319 320 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
320 321 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
321 322 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
322 323 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
323 324 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
324 325 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
325 326 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
326 327 5.136068 AGAGAGAGAGAGAGAGAGAGAGA 57.864 47.826 0.00 0.00 0.00 3.10
327 328 4.280677 GGAGAGAGAGAGAGAGAGAGAGAG 59.719 54.167 0.00 0.00 0.00 3.20
328 329 4.219115 GGAGAGAGAGAGAGAGAGAGAGA 58.781 52.174 0.00 0.00 0.00 3.10
329 330 3.963374 TGGAGAGAGAGAGAGAGAGAGAG 59.037 52.174 0.00 0.00 0.00 3.20
330 331 3.706594 GTGGAGAGAGAGAGAGAGAGAGA 59.293 52.174 0.00 0.00 0.00 3.10
331 332 3.452264 TGTGGAGAGAGAGAGAGAGAGAG 59.548 52.174 0.00 0.00 0.00 3.20
332 333 3.449918 TGTGGAGAGAGAGAGAGAGAGA 58.550 50.000 0.00 0.00 0.00 3.10
333 334 3.912496 TGTGGAGAGAGAGAGAGAGAG 57.088 52.381 0.00 0.00 0.00 3.20
334 335 3.779738 TCATGTGGAGAGAGAGAGAGAGA 59.220 47.826 0.00 0.00 0.00 3.10
335 336 4.155063 TCATGTGGAGAGAGAGAGAGAG 57.845 50.000 0.00 0.00 0.00 3.20
336 337 4.794311 ATCATGTGGAGAGAGAGAGAGA 57.206 45.455 0.00 0.00 0.00 3.10
337 338 5.857471 AAATCATGTGGAGAGAGAGAGAG 57.143 43.478 0.00 0.00 0.00 3.20
338 339 6.351711 GGAAAAATCATGTGGAGAGAGAGAGA 60.352 42.308 0.00 0.00 0.00 3.10
339 340 5.816777 GGAAAAATCATGTGGAGAGAGAGAG 59.183 44.000 0.00 0.00 0.00 3.20
340 341 5.486775 AGGAAAAATCATGTGGAGAGAGAGA 59.513 40.000 0.00 0.00 0.00 3.10
341 342 5.743117 AGGAAAAATCATGTGGAGAGAGAG 58.257 41.667 0.00 0.00 0.00 3.20
342 343 5.768980 AGGAAAAATCATGTGGAGAGAGA 57.231 39.130 0.00 0.00 0.00 3.10
353 354 3.899052 TCCGTCGGTAGGAAAAATCAT 57.101 42.857 11.88 0.00 34.33 2.45
367 368 6.946229 TTTAGAAGAAGAAGAAATCCGTCG 57.054 37.500 0.00 0.00 0.00 5.12
400 401 6.127479 ACAAGACACTTGTTGGAAAAAGCATA 60.127 34.615 10.73 0.00 0.00 3.14
433 435 2.874701 GCCTGCTCGATGACATAATTGT 59.125 45.455 0.00 0.00 39.32 2.71
442 444 3.904479 ATCGCGCCTGCTCGATGA 61.904 61.111 15.33 0.00 41.46 2.92
455 457 6.408858 TCTTGTTGTAGAAAATCTCATCGC 57.591 37.500 0.00 0.00 0.00 4.58
470 472 8.691661 AACCTTTGTAACAGATATCTTGTTGT 57.308 30.769 21.15 9.26 0.00 3.32
487 489 8.137437 CAGAATTCATGTTGTAGAAACCTTTGT 58.863 33.333 8.44 0.00 0.00 2.83
506 508 6.913170 TGCAGAATCCTTTACAACAGAATTC 58.087 36.000 0.00 0.00 0.00 2.17
508 510 6.265196 TGTTGCAGAATCCTTTACAACAGAAT 59.735 34.615 0.00 0.00 41.58 2.40
517 519 7.230510 ACACAGTTAATGTTGCAGAATCCTTTA 59.769 33.333 0.00 0.00 41.41 1.85
531 533 2.685897 ACGGTTGCAACACAGTTAATGT 59.314 40.909 29.55 10.87 45.43 2.71
540 542 1.358759 CCCTTCACGGTTGCAACAC 59.641 57.895 29.55 17.93 0.00 3.32
568 570 0.179089 GCTGTCAGATCTGATGCGGT 60.179 55.000 27.51 0.00 42.18 5.68
569 571 0.104487 AGCTGTCAGATCTGATGCGG 59.896 55.000 30.34 23.59 42.43 5.69
577 587 1.587613 GGTCGCGAGCTGTCAGATC 60.588 63.158 29.66 8.09 0.00 2.75
610 620 1.461127 GCGTCGGCAGATTGATATTCC 59.539 52.381 0.00 0.00 39.62 3.01
611 621 2.135139 TGCGTCGGCAGATTGATATTC 58.865 47.619 0.00 0.00 46.21 1.75
612 622 2.238942 TGCGTCGGCAGATTGATATT 57.761 45.000 0.00 0.00 46.21 1.28
613 623 3.986970 TGCGTCGGCAGATTGATAT 57.013 47.368 0.00 0.00 46.21 1.63
630 640 1.152984 TATGAAGGGGCGTGCCATG 60.153 57.895 13.76 0.00 37.98 3.66
633 643 2.516225 GGTATGAAGGGGCGTGCC 60.516 66.667 1.16 1.16 0.00 5.01
641 651 2.114616 AGTGCAGGAGAGGTATGAAGG 58.885 52.381 0.00 0.00 0.00 3.46
655 665 4.003648 CTGTTTTACCCCTTCTAGTGCAG 58.996 47.826 0.00 0.00 0.00 4.41
658 668 7.621796 ACTATTCTGTTTTACCCCTTCTAGTG 58.378 38.462 0.00 0.00 0.00 2.74
664 674 6.168389 CGTGTACTATTCTGTTTTACCCCTT 58.832 40.000 0.00 0.00 0.00 3.95
665 675 5.727434 CGTGTACTATTCTGTTTTACCCCT 58.273 41.667 0.00 0.00 0.00 4.79
724 737 1.129058 GAATAAGGCCTTCCCTCCGA 58.871 55.000 24.49 1.99 45.62 4.55
726 739 0.837940 ACGAATAAGGCCTTCCCTCC 59.162 55.000 24.49 7.22 45.62 4.30
727 740 1.763545 AGACGAATAAGGCCTTCCCTC 59.236 52.381 24.49 15.58 45.62 4.30
729 742 1.538419 CGAGACGAATAAGGCCTTCCC 60.538 57.143 24.49 11.33 0.00 3.97
730 743 1.538419 CCGAGACGAATAAGGCCTTCC 60.538 57.143 24.49 11.71 0.00 3.46
731 744 1.407979 TCCGAGACGAATAAGGCCTTC 59.592 52.381 24.49 7.14 0.00 3.46
732 745 1.409427 CTCCGAGACGAATAAGGCCTT 59.591 52.381 24.18 24.18 0.00 4.35
733 746 1.033574 CTCCGAGACGAATAAGGCCT 58.966 55.000 0.00 0.00 0.00 5.19
734 747 0.032267 CCTCCGAGACGAATAAGGCC 59.968 60.000 0.00 0.00 0.00 5.19
735 748 0.032267 CCCTCCGAGACGAATAAGGC 59.968 60.000 0.00 0.00 0.00 4.35
736 749 0.674534 CCCCTCCGAGACGAATAAGG 59.325 60.000 0.00 0.00 0.00 2.69
737 750 0.674534 CCCCCTCCGAGACGAATAAG 59.325 60.000 0.00 0.00 0.00 1.73
738 751 2.816746 CCCCCTCCGAGACGAATAA 58.183 57.895 0.00 0.00 0.00 1.40
739 752 4.593033 CCCCCTCCGAGACGAATA 57.407 61.111 0.00 0.00 0.00 1.75
789 802 6.586344 TGGCACAAGAAAATTCAAATGGTAA 58.414 32.000 0.00 0.00 31.92 2.85
822 835 1.682323 GTAGGGAAAGGAGTAGGCTCG 59.318 57.143 0.00 0.00 42.53 5.03
831 844 4.175962 ACTGGAATGAAGTAGGGAAAGGA 58.824 43.478 0.00 0.00 0.00 3.36
845 858 7.798596 ATAGTGAGATTTGCTAACTGGAATG 57.201 36.000 0.00 0.00 38.82 2.67
875 898 1.677552 GAAAGTGGAAGGAGCCGGA 59.322 57.895 5.05 0.00 0.00 5.14
884 907 1.625818 GAGCTGAGGAGGAAAGTGGAA 59.374 52.381 0.00 0.00 0.00 3.53
931 963 3.196901 GGGTTATTCAATTGTGGGGGAAC 59.803 47.826 5.13 3.25 0.00 3.62
932 964 3.181406 TGGGTTATTCAATTGTGGGGGAA 60.181 43.478 5.13 0.00 0.00 3.97
933 965 2.383683 TGGGTTATTCAATTGTGGGGGA 59.616 45.455 5.13 0.00 0.00 4.81
1056 1115 0.447011 AGACGAACGAGGCTACGAAG 59.553 55.000 12.16 6.28 37.03 3.79
1062 1121 1.081376 CACGAAGACGAACGAGGCT 60.081 57.895 0.14 0.00 42.66 4.58
1212 1271 2.638330 GAATGCCGCCGTACTGCCTA 62.638 60.000 3.50 0.00 0.00 3.93
1214 1273 3.573491 GAATGCCGCCGTACTGCC 61.573 66.667 3.50 0.00 0.00 4.85
1539 1598 2.235898 GGTGAGGTTGAAGATGAGCTCT 59.764 50.000 16.19 0.00 40.20 4.09
1659 1730 3.969250 GATGCTGGACCCGCCGAAA 62.969 63.158 5.34 0.00 40.66 3.46
1706 1777 3.636231 CGTTGAGGCCCTGGTCCA 61.636 66.667 0.00 0.00 0.00 4.02
1904 2014 0.034896 GATGTTGTCACGGGTGAGGT 59.965 55.000 0.94 0.00 40.75 3.85
1942 2052 1.887797 AATGGGAGTTCCGGTATCCA 58.112 50.000 19.31 13.44 38.76 3.41
1946 2056 5.190132 TGAATTAGAAATGGGAGTTCCGGTA 59.810 40.000 0.00 0.00 38.76 4.02
1951 2061 4.335594 CGGGTGAATTAGAAATGGGAGTTC 59.664 45.833 0.00 0.00 0.00 3.01
1955 2065 2.025793 TGCGGGTGAATTAGAAATGGGA 60.026 45.455 0.00 0.00 0.00 4.37
1956 2066 2.374184 TGCGGGTGAATTAGAAATGGG 58.626 47.619 0.00 0.00 0.00 4.00
2005 2469 6.108015 GCACCATACCATGAATCAAACAAAT 58.892 36.000 0.00 0.00 0.00 2.32
2009 2473 3.489059 CCGCACCATACCATGAATCAAAC 60.489 47.826 0.00 0.00 0.00 2.93
2011 2475 2.296792 CCGCACCATACCATGAATCAA 58.703 47.619 0.00 0.00 0.00 2.57
2025 2493 1.263217 CACACTTCAGTTTACCGCACC 59.737 52.381 0.00 0.00 0.00 5.01
2028 2496 3.744426 ACATACACACTTCAGTTTACCGC 59.256 43.478 0.00 0.00 0.00 5.68
2029 2497 4.986034 TCACATACACACTTCAGTTTACCG 59.014 41.667 0.00 0.00 0.00 4.02
2038 4233 2.987149 CGTCCTGTCACATACACACTTC 59.013 50.000 0.00 0.00 33.45 3.01
2041 4236 2.058798 CACGTCCTGTCACATACACAC 58.941 52.381 0.00 0.00 33.45 3.82
2046 4241 3.953712 AACATCACGTCCTGTCACATA 57.046 42.857 0.32 0.00 0.00 2.29
2047 4242 2.807967 CAAACATCACGTCCTGTCACAT 59.192 45.455 0.32 0.00 0.00 3.21
2073 4289 2.509336 GATGCCACCGTCTCCGTG 60.509 66.667 0.00 0.00 0.00 4.94
2238 4454 2.045242 TGTAGCCGGAGCGTCTCT 60.045 61.111 5.05 0.00 46.67 3.10
2274 4490 2.434185 TCGGCGTTCTCATGGTGC 60.434 61.111 6.85 0.00 0.00 5.01
2460 4676 1.604604 CGAAGGGCAGGAACTCAAAA 58.395 50.000 0.00 0.00 34.60 2.44
2686 4902 2.558378 CGTGGCATCAACATCAGAGAT 58.442 47.619 0.00 0.00 0.00 2.75
2724 4940 1.561717 TTTTGTGCGCGCATACGACT 61.562 50.000 38.62 0.00 43.93 4.18
2754 4979 9.448438 AGTGAAACATCTTTATTGTGCTACATA 57.552 29.630 0.00 0.00 41.43 2.29
2755 4980 8.340618 AGTGAAACATCTTTATTGTGCTACAT 57.659 30.769 0.00 0.00 41.43 2.29
2756 4981 7.360017 CGAGTGAAACATCTTTATTGTGCTACA 60.360 37.037 0.00 0.00 41.43 2.74
2802 5027 4.379290 GGACCCGTCGTCTAATATAAGCTC 60.379 50.000 0.00 0.00 41.64 4.09
2810 5035 0.750850 CCATGGACCCGTCGTCTAAT 59.249 55.000 5.56 0.00 41.64 1.73
2811 5036 0.323633 TCCATGGACCCGTCGTCTAA 60.324 55.000 11.44 0.00 41.64 2.10
2817 5042 2.122783 TTTGAATCCATGGACCCGTC 57.877 50.000 18.99 12.63 0.00 4.79
2832 5057 8.237949 TGTTTACAAAGTTTGACTCGATTTTGA 58.762 29.630 22.23 0.00 31.79 2.69
2927 5152 2.806288 AATAAGTGCACGAATCACGC 57.194 45.000 12.01 0.00 46.94 5.34
3086 5329 0.743688 ACGAGAGGAGTATGCTGCAG 59.256 55.000 10.11 10.11 36.27 4.41
3087 5330 1.134995 CAACGAGAGGAGTATGCTGCA 60.135 52.381 4.13 4.13 36.27 4.41
3088 5331 1.565305 CAACGAGAGGAGTATGCTGC 58.435 55.000 0.00 0.00 36.27 5.25
3089 5332 1.565305 GCAACGAGAGGAGTATGCTG 58.435 55.000 0.00 0.00 36.27 4.41
3090 5333 0.461961 GGCAACGAGAGGAGTATGCT 59.538 55.000 0.00 0.00 42.52 3.79
3091 5334 0.461961 AGGCAACGAGAGGAGTATGC 59.538 55.000 0.00 0.00 46.39 3.14
3092 5335 1.804372 GCAGGCAACGAGAGGAGTATG 60.804 57.143 0.00 0.00 46.39 2.39
3255 5511 2.292521 TGAAGGTGGTGGAGAGATAGCT 60.293 50.000 0.00 0.00 0.00 3.32
3284 5548 6.155565 AGAGATGCAATTTGATTGGGAAATGA 59.844 34.615 0.00 0.00 40.57 2.57
3395 5659 2.046892 GACCTCATGTGGCGCTGT 60.047 61.111 13.75 0.00 0.00 4.40
3454 5718 5.643348 TCAGCAAAGCTTGATTATCTTCGAA 59.357 36.000 0.00 0.00 36.40 3.71
3532 5796 1.813178 GCAGCCTGGGACTAAGTTTTC 59.187 52.381 0.00 0.00 0.00 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.