AutoCloner

Multiple sequence alignment - TraesCS2B01G517200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS2B01G517200	chr2B	100.000	3527	0	0	1	3527	712052002	712048476	0.000000e+00	6514.0
1	TraesCS2B01G517200	chr2B	83.855	1790	244	31	986	2761	712008559	712006801	0.000000e+00	1663.0
2	TraesCS2B01G517200	chr2B	79.485	1477	247	37	995	2446	712077364	712075919	0.000000e+00	998.0
3	TraesCS2B01G517200	chr2B	84.250	400	51	8	1022	1415	712359934	712359541	2.570000e-101	379.0
4	TraesCS2B01G517200	chr2B	74.442	806	164	30	1029	1813	712776022	712775238	3.420000e-80	309.0
5	TraesCS2B01G517200	chr2B	97.826	46	0	1	3150	3195	712048782	712048738	1.050000e-10	78.7
6	TraesCS2B01G517200	chr2A	94.157	2071	104	7	751	2807	723160479	723158412	0.000000e+00	3138.0
7	TraesCS2B01G517200	chr2A	83.222	1800	237	42	990	2761	723134149	723132387	0.000000e+00	1591.0
8	TraesCS2B01G517200	chr2A	94.562	754	35	2	1	748	723161450	723160697	0.000000e+00	1160.0
9	TraesCS2B01G517200	chr2A	78.788	1353	232	38	1132	2461	723195021	723193701	0.000000e+00	857.0
10	TraesCS2B01G517200	chr2A	83.580	743	55	30	2804	3527	688980265	688979571	4.970000e-178	634.0
11	TraesCS2B01G517200	chr2A	73.387	992	205	38	1029	2001	723579133	723578182	7.350000e-82	315.0
12	TraesCS2B01G517200	chr2A	81.297	401	38	19	1022	1419	723511842	723511476	1.240000e-74	291.0
13	TraesCS2B01G517200	chr2A	95.238	42	1	1	3154	3195	688979859	688979819	8.170000e-07	65.8
14	TraesCS2B01G517200	chr2D	82.137	1797	253	43	995	2761	588541006	588539248	0.000000e+00	1478.0
15	TraesCS2B01G517200	chr2D	85.740	554	36	23	2984	3527	410487706	410487186	2.390000e-151	545.0
16	TraesCS2B01G517200	chr2D	84.383	397	56	4	1022	1415	588735708	588735315	5.520000e-103	385.0
17	TraesCS2B01G517200	chr2D	73.327	1031	210	44	989	2000	589189299	589188315	1.580000e-83	320.0
18	TraesCS2B01G517200	chr2D	91.111	180	10	3	2805	2983	410487906	410487732	4.550000e-59	239.0
19	TraesCS2B01G517200	chr2D	78.862	369	49	20	2805	3161	453619640	453619289	4.580000e-54	222.0
20	TraesCS2B01G517200	chr2D	72.154	571	120	22	1029	1585	589184440	589183895	1.710000e-28	137.0
21	TraesCS2B01G517200	chr2D	79.200	125	14	10	3088	3207	410487559	410487442	3.780000e-10	76.8
22	TraesCS2B01G517200	chr5B	84.176	752	57	33	2804	3527	596083393	596084110	0.000000e+00	673.0
23	TraesCS2B01G517200	chr5B	77.570	107	17	5	3091	3195	596083747	596083848	1.370000e-04	58.4
24	TraesCS2B01G517200	chr3A	83.333	792	57	31	2803	3527	746387937	746387154	0.000000e+00	662.0
25	TraesCS2B01G517200	chr3A	94.737	38	1	1	3158	3195	746387452	746387416	1.370000e-04	58.4
26	TraesCS2B01G517200	chr3B	83.531	759	59	36	2802	3527	288778181	288778906	0.000000e+00	649.0
27	TraesCS2B01G517200	chr3B	93.478	322	21	0	3206	3527	760318075	760317754	2.460000e-131	479.0
28	TraesCS2B01G517200	chr3B	91.753	97	8	0	3050	3146	760318179	760318083	6.140000e-28	135.0
29	TraesCS2B01G517200	chr3B	78.182	110	16	7	3088	3195	288778541	288778644	2.940000e-06	63.9
30	TraesCS2B01G517200	chr7D	89.569	441	36	8	3091	3527	551654577	551654143	5.150000e-153	551.0
31	TraesCS2B01G517200	chr7D	88.957	163	10	5	2984	3146	551654719	551654565	9.990000e-46	195.0
32	TraesCS2B01G517200	chr7D	95.652	46	1	1	3150	3195	551654448	551654404	4.880000e-09	73.1
33	TraesCS2B01G517200	chr6D	95.362	345	16	0	3183	3527	379036311	379036655	1.850000e-152	549.0
34	TraesCS2B01G517200	chr6D	87.500	368	18	7	2800	3146	379035959	379036319	1.970000e-107	399.0
35	TraesCS2B01G517200	chr4D	83.272	544	45	22	2984	3527	139500466	139500963	3.210000e-125	459.0
36	TraesCS2B01G517200	chr4D	91.713	181	15	0	2804	2984	139500256	139500436	5.840000e-63	252.0
37	TraesCS2B01G517200	chr6A	90.544	349	28	3	3184	3527	606424063	606424411	1.150000e-124	457.0
38	TraesCS2B01G517200	chr6A	86.301	73	5	5	3126	3195	606424074	606424144	1.360000e-09	75.0
39	TraesCS2B01G517200	chr7A	91.489	329	28	0	3199	3527	643597772	643598100	1.490000e-123	453.0
40	TraesCS2B01G517200	chr7A	81.944	432	32	15	2802	3195	643597415	643597838	1.220000e-84	324.0
41	TraesCS2B01G517200	chr5D	92.818	181	12	1	2803	2983	408495842	408495663	9.710000e-66	261.0
42	TraesCS2B01G517200	chr5D	88.679	159	11	1	2988	3146	408495282	408495131	1.670000e-43	187.0
43	TraesCS2B01G517200	chr6B	91.061	179	16	0	2805	2983	678111438	678111616	3.520000e-60	243.0
44	TraesCS2B01G517200	chr6B	89.503	181	15	3	2804	2984	126959222	126959398	3.540000e-55	226.0
45	TraesCS2B01G517200	chr6B	87.395	119	8	1	2985	3103	126959424	126959535	2.860000e-26	130.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS2B01G517200	chr2B	712048476	712052002	3526	True	3296.350000	6514	98.913000	1	3527	2	chr2B.!!$R5	3526
1	TraesCS2B01G517200	chr2B	712006801	712008559	1758	True	1663.000000	1663	83.855000	986	2761	1	chr2B.!!$R1	1775
2	TraesCS2B01G517200	chr2B	712075919	712077364	1445	True	998.000000	998	79.485000	995	2446	1	chr2B.!!$R2	1451
3	TraesCS2B01G517200	chr2B	712775238	712776022	784	True	309.000000	309	74.442000	1029	1813	1	chr2B.!!$R4	784
4	TraesCS2B01G517200	chr2A	723158412	723161450	3038	True	2149.000000	3138	94.359500	1	2807	2	chr2A.!!$R6	2806
5	TraesCS2B01G517200	chr2A	723132387	723134149	1762	True	1591.000000	1591	83.222000	990	2761	1	chr2A.!!$R1	1771
6	TraesCS2B01G517200	chr2A	723193701	723195021	1320	True	857.000000	857	78.788000	1132	2461	1	chr2A.!!$R2	1329
7	TraesCS2B01G517200	chr2A	688979571	688980265	694	True	349.900000	634	89.409000	2804	3527	2	chr2A.!!$R5	723
8	TraesCS2B01G517200	chr2A	723578182	723579133	951	True	315.000000	315	73.387000	1029	2001	1	chr2A.!!$R4	972
9	TraesCS2B01G517200	chr2D	588539248	588541006	1758	True	1478.000000	1478	82.137000	995	2761	1	chr2D.!!$R2	1766
10	TraesCS2B01G517200	chr2D	410487186	410487906	720	True	286.933333	545	85.350333	2805	3527	3	chr2D.!!$R4	722
11	TraesCS2B01G517200	chr2D	589183895	589189299	5404	True	228.500000	320	72.740500	989	2000	2	chr2D.!!$R5	1011
12	TraesCS2B01G517200	chr5B	596083393	596084110	717	False	365.700000	673	80.873000	2804	3527	2	chr5B.!!$F1	723
13	TraesCS2B01G517200	chr3A	746387154	746387937	783	True	360.200000	662	89.035000	2803	3527	2	chr3A.!!$R1	724
14	TraesCS2B01G517200	chr3B	288778181	288778906	725	False	356.450000	649	80.856500	2802	3527	2	chr3B.!!$F1	725
15	TraesCS2B01G517200	chr7D	551654143	551654719	576	True	273.033333	551	91.392667	2984	3527	3	chr7D.!!$R1	543
16	TraesCS2B01G517200	chr6D	379035959	379036655	696	False	474.000000	549	91.431000	2800	3527	2	chr6D.!!$F1	727
17	TraesCS2B01G517200	chr4D	139500256	139500963	707	False	355.500000	459	87.492500	2804	3527	2	chr4D.!!$F1	723
18	TraesCS2B01G517200	chr7A	643597415	643598100	685	False	388.500000	453	86.716500	2802	3527	2	chr7A.!!$F1	725
19	TraesCS2B01G517200	chr5D	408495131	408495842	711	True	224.000000	261	90.748500	2803	3146	2	chr5D.!!$R1	343

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
55	56	0.673956	TCTGTCGAGGACGGAGACTG	60.674	60.0	3.25	0.0	42.21	3.51	F
1899	2174	0.040692	GCGAAAAACTCACCGGGAAC	60.041	55.0	6.32	0.0	0.00	3.62	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1964	2242	1.209747	AGGAAAGGTGAAGATACGCCC	59.790	52.381	0.00	0.00	40.86	6.13	R
2941	4686	0.174845	TGGCCCATAAGAACGAGTCG	59.825	55.000	11.85	11.85	0.00	4.18	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
46	47	2.750637	GGAGGCGTCTGTCGAGGA	60.751	66.667	0.00	0.00	42.86	3.71
55	56	0.673956	TCTGTCGAGGACGGAGACTG	60.674	60.000	3.25	0.00	42.21	3.51
180	184	4.117661	AGCGTCTCGAGGAACGGC	62.118	66.667	23.11	16.52	42.82	5.68
212	216	2.032528	CTCCGGCAGGTTCAGCAA	59.967	61.111	1.81	0.00	39.05	3.91
216	220	2.554636	CGGCAGGTTCAGCAAGCAA	61.555	57.895	0.00	0.00	31.93	3.91
259	263	2.946329	AGAACGACGCATGAGTAGAGAT	59.054	45.455	15.99	2.53	0.00	2.75
262	266	2.286477	ACGACGCATGAGTAGAGATTCG	60.286	50.000	15.99	9.46	0.00	3.34
373	377	4.154347	CGAGGTGGAGCTCCTGGC	62.154	72.222	32.28	21.19	42.19	4.85
416	423	4.293648	CCACTGGTCGACGTGGCA	62.294	66.667	23.86	10.22	43.59	4.92
552	559	0.744057	GGCTGCAGCTCTTCTTCTCC	60.744	60.000	35.82	13.26	41.70	3.71
554	561	1.338960	GCTGCAGCTCTTCTTCTCCTT	60.339	52.381	31.33	0.00	38.21	3.36
555	562	2.620242	CTGCAGCTCTTCTTCTCCTTC	58.380	52.381	0.00	0.00	0.00	3.46
558	565	1.067283	CAGCTCTTCTTCTCCTTCGCA	60.067	52.381	0.00	0.00	0.00	5.10
702	709	1.758906	GGTCGGGAGGAAGGAGAGG	60.759	68.421	0.00	0.00	0.00	3.69
706	713	2.428085	GGGAGGAAGGAGAGGACGC	61.428	68.421	0.00	0.00	0.00	5.19
748	755	1.723608	CTCGCTCAGCCGATCTCTGT	61.724	60.000	10.41	0.00	36.54	3.41
749	756	1.140589	CGCTCAGCCGATCTCTGTT	59.859	57.895	10.41	0.00	33.48	3.16
783	1005	1.170290	CCACGCCGACCCTTTTCTTT	61.170	55.000	0.00	0.00	0.00	2.52
793	1015	1.128513	CCTTTTCTTTTGCGGCGAAC	58.871	50.000	12.98	0.00	0.00	3.95
898	1120	4.081807	GTGGAGTTACCGACTAATGAACCT	60.082	45.833	0.00	0.00	39.19	3.50
909	1131	9.511272	ACCGACTAATGAACCTACTAAAATTTT	57.489	29.630	8.75	8.75	0.00	1.82
969	1201	2.245159	TTCGCAGATCATCCATCCAC	57.755	50.000	0.00	0.00	35.04	4.02
1027	1259	2.342279	CGCACAGGAACGGAGGAA	59.658	61.111	0.00	0.00	0.00	3.36
1095	1327	2.278206	CTGATGTCCGACGAGGCG	60.278	66.667	0.00	0.00	40.77	5.52
1182	1414	4.268687	GACACCAAGTCAGGCGAG	57.731	61.111	0.00	0.00	46.77	5.03
1416	1679	3.710722	ACGCTCTGCCCCTTCCTG	61.711	66.667	0.00	0.00	0.00	3.86
1618	1893	1.084652	AGGATCATGGACCCCCACA	59.915	57.895	0.00	0.00	46.98	4.17
1648	1923	3.709633	AGCTCATCACCGCCTGCA	61.710	61.111	0.00	0.00	0.00	4.41
1899	2174	0.040692	GCGAAAAACTCACCGGGAAC	60.041	55.000	6.32	0.00	0.00	3.62
1941	2216	2.353030	GTTGCGCCGGTCACAAAC	60.353	61.111	4.18	0.00	0.00	2.93
2090	2380	2.573869	CACAGATGACGCCGTCCT	59.426	61.111	15.60	4.42	0.00	3.85
2101	2391	2.675423	CCGTCCTGTCGGTCTCCA	60.675	66.667	0.00	0.00	44.77	3.86
2111	2401	2.328099	CGGTCTCCACCTTGCTTGC	61.328	63.158	0.00	0.00	41.17	4.01
2143	2433	0.179124	CCTGGAAGTACTCTCGCTGC	60.179	60.000	0.00	0.00	0.00	5.25
2144	2434	0.528017	CTGGAAGTACTCTCGCTGCA	59.472	55.000	0.00	0.00	0.00	4.41
2210	2509	0.826715	AGGGACCATGACGATGACAG	59.173	55.000	0.00	0.00	0.00	3.51
2511	2816	4.363990	CGCCGTGCCAGAGTCACT	62.364	66.667	0.00	0.00	32.54	3.41
2517	2822	1.792949	CGTGCCAGAGTCACTTGTAAC	59.207	52.381	0.00	0.00	32.54	2.50
2527	2832	7.543868	CCAGAGTCACTTGTAACTTAGATTGAG	59.456	40.741	0.00	0.00	0.00	3.02
2534	2839	6.942576	ACTTGTAACTTAGATTGAGGCAACAT	59.057	34.615	0.00	0.00	41.41	2.71
2741	4351	3.610040	TGTCGGACAAGCATGTTCTAT	57.390	42.857	8.68	0.00	40.74	1.98
2779	4389	2.429250	ACAACTTTGTACCAAACCAGCC	59.571	45.455	0.00	0.00	40.16	4.85
2793	4403	5.192927	CAAACCAGCCTCAGTTAATATGGA	58.807	41.667	0.00	0.00	0.00	3.41
2796	4406	4.248859	CCAGCCTCAGTTAATATGGATCG	58.751	47.826	0.00	0.00	0.00	3.69
2798	4408	3.261897	AGCCTCAGTTAATATGGATCGGG	59.738	47.826	0.00	0.00	0.00	5.14
2906	4649	1.135083	CGATACAGAGGTTCCGCTGTT	60.135	52.381	27.19	17.28	42.72	3.16
2941	4686	1.883725	GAAAAGGCCGTGTCGTCGTC	61.884	60.000	0.00	0.00	0.00	4.20
3085	5259	0.731514	ACGATGCTACGTGACAACCG	60.732	55.000	0.00	7.21	44.84	4.44
3094	5268	1.372499	GTGACAACCGTAGCGAGCA	60.372	57.895	0.00	0.00	0.00	4.26
3138	6488	1.003051	GGAGCCCAGGAGGTAGGAA	59.997	63.158	0.00	0.00	38.26	3.36
3145	6543	2.187163	GGAGGTAGGAACAGCGGC	59.813	66.667	0.00	0.00	0.00	6.53
3146	6544	2.656069	GGAGGTAGGAACAGCGGCA	61.656	63.158	1.45	0.00	0.00	5.69
3147	6545	1.448013	GAGGTAGGAACAGCGGCAC	60.448	63.158	1.45	0.00	0.00	5.01
3327	7243	2.023673	CTCCGGCCATATTGCAAGAAA	58.976	47.619	4.94	0.00	0.00	2.52
3337	7253	6.372381	GCCATATTGCAAGAAAATGGAAAAGT	59.628	34.615	25.41	1.87	39.60	2.66
3346	7262	7.926018	GCAAGAAAATGGAAAAGTAAGGAAAGA	59.074	33.333	0.00	0.00	0.00	2.52
3490	7406	6.487689	ACAGTAGCTTAAAGCAGATTTGTC	57.512	37.500	0.00	0.00	45.56	3.18
3515	7431	5.234972	GCAAAATTTAACAGCAGCTTGAAGT	59.765	36.000	0.00	0.00	0.00	3.01

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
75	76	3.998672	GTGGACCTGACGCCGGAA	61.999	66.667	5.05	0.00	0.00	4.30
79	80	4.436998	CCTCGTGGACCTGACGCC	62.437	72.222	0.00	0.00	36.75	5.68
180	184	1.450312	GGAGACCGCCATCAACCTG	60.450	63.158	0.00	0.00	0.00	4.00
194	198	2.454832	CTTGCTGAACCTGCCGGAGA	62.455	60.000	5.05	0.00	0.00	3.71
216	220	1.953017	CTCGCTACGCCTCAGCTAT	59.047	57.895	0.00	0.00	36.86	2.97
228	232	2.202440	GTCGTTCTGCGCTCGCTA	60.202	61.111	9.73	0.99	42.51	4.26
240	244	3.696898	GAATCTCTACTCATGCGTCGTT	58.303	45.455	0.00	0.00	0.00	3.85
249	253	1.746470	TGCCGACGAATCTCTACTCA	58.254	50.000	0.00	0.00	0.00	3.41
259	263	1.067060	CTGGTATGAGATGCCGACGAA	59.933	52.381	0.00	0.00	37.93	3.85
262	266	0.601311	GGCTGGTATGAGATGCCGAC	60.601	60.000	0.00	0.00	37.93	4.79
345	349	2.357517	CACCTCGACCTGCGCTTT	60.358	61.111	9.73	0.00	40.61	3.51
552	559	3.364062	CACCTTCTACTACGATGCGAAG	58.636	50.000	0.00	0.00	0.00	3.79
554	561	1.674441	CCACCTTCTACTACGATGCGA	59.326	52.381	0.00	0.00	0.00	5.10
555	562	1.404391	ACCACCTTCTACTACGATGCG	59.596	52.381	0.00	0.00	0.00	4.73
558	565	3.288964	CTGGACCACCTTCTACTACGAT	58.711	50.000	0.00	0.00	37.04	3.73
606	613	2.432628	CACACCGTCTCCTTCGCC	60.433	66.667	0.00	0.00	0.00	5.54
738	745	1.437986	GTCGGGGAACAGAGATCGG	59.562	63.158	0.00	0.00	34.35	4.18
741	748	2.722201	GCCGTCGGGGAACAGAGAT	61.722	63.158	14.38	0.00	38.47	2.75
766	988	0.666374	CAAAAGAAAAGGGTCGGCGT	59.334	50.000	6.85	0.00	0.00	5.68
769	991	0.039527	CCGCAAAAGAAAAGGGTCGG	60.040	55.000	0.00	0.00	0.00	4.79
773	995	0.031449	TTCGCCGCAAAAGAAAAGGG	59.969	50.000	0.00	0.00	0.00	3.95
783	1005	3.053291	GTCATGGGTTCGCCGCAA	61.053	61.111	0.00	0.00	39.72	4.85
793	1015	0.037882	CCAGATCGGATCGTCATGGG	60.038	60.000	12.08	5.23	36.56	4.00
909	1131	2.270352	AATCTGAGTCGGTTGCCAAA	57.730	45.000	0.00	0.00	0.00	3.28
921	1153	9.126151	TCCTCTTATATCGCCTATAAATCTGAG	57.874	37.037	0.00	0.00	33.02	3.35
969	1201	0.033228	GGCGATCAGGTCAGATCAGG	59.967	60.000	0.00	0.00	43.61	3.86
1442	1711	2.670592	TGTCGAAGTCCGCCGAGA	60.671	61.111	0.00	0.00	38.37	4.04
1659	1934	1.216710	CTCCTCCAGCGTCAGGTTC	59.783	63.158	0.00	0.00	0.00	3.62
1899	2174	3.281240	GGTTGCTCACAGCCATGG	58.719	61.111	7.63	7.63	45.96	3.66
1961	2239	2.588034	GGTGAAGATACGCCCGCC	60.588	66.667	0.00	0.00	34.73	6.13
1964	2242	1.209747	AGGAAAGGTGAAGATACGCCC	59.790	52.381	0.00	0.00	40.86	6.13
2044	2334	4.106925	CTGGAGGCTCAGGTGGGC	62.107	72.222	17.69	0.00	0.00	5.36
2076	2366	2.885861	GACAGGACGGCGTCATCT	59.114	61.111	37.13	24.77	33.68	2.90
2111	2401	4.101448	CCAGGTTCCTGGCCTCGG	62.101	72.222	22.70	4.56	45.72	4.63
2136	2426	0.313672	GACCTAGAGGATGCAGCGAG	59.686	60.000	1.60	0.00	38.94	5.03
2143	2433	1.133199	AGGCTCTGGACCTAGAGGATG	60.133	57.143	17.45	0.67	43.49	3.51
2144	2434	1.146982	GAGGCTCTGGACCTAGAGGAT	59.853	57.143	7.40	0.00	43.49	3.24
2210	2509	2.559440	GGCCACTGTCTGAATCTGATC	58.441	52.381	0.00	0.00	0.00	2.92
2511	2816	7.759489	AATGTTGCCTCAATCTAAGTTACAA	57.241	32.000	0.00	0.00	0.00	2.41
2534	2839	8.911918	TTACTCTTATTACAGGTTCAAGCAAA	57.088	30.769	0.00	0.00	0.00	3.68
2649	3995	9.624373	AGTATTATCGGTGAGAAAGAAGTACTA	57.376	33.333	0.00	0.00	0.00	1.82
2650	3996	8.522542	AGTATTATCGGTGAGAAAGAAGTACT	57.477	34.615	0.00	0.00	0.00	2.73
2709	4055	5.207768	GCTTGTCCGACAATAATTGCATAG	58.792	41.667	14.29	0.28	37.48	2.23
2779	4389	4.207891	CCCCCGATCCATATTAACTGAG	57.792	50.000	0.00	0.00	0.00	3.35
2906	4649	4.923871	GCCTTTTCTATTAGCGATCGATGA	59.076	41.667	21.57	10.48	0.00	2.92
2941	4686	0.174845	TGGCCCATAAGAACGAGTCG	59.825	55.000	11.85	11.85	0.00	4.18
3039	5161	0.726256	GGTCGAGTAGTGGTCGAGAC	59.274	60.000	0.00	0.00	46.62	3.36
3041	5163	1.008329	GAGGTCGAGTAGTGGTCGAG	58.992	60.000	0.00	0.00	46.62	4.04
3042	5164	0.612229	AGAGGTCGAGTAGTGGTCGA	59.388	55.000	0.00	0.00	43.97	4.20
3337	7253	7.241039	TCCCCTTTCCTTTATTCTCTTTCCTTA	59.759	37.037	0.00	0.00	0.00	2.69
3346	7262	3.788708	CCTCCTCCCCTTTCCTTTATTCT	59.211	47.826	0.00	0.00	0.00	2.40
3415	7331	4.759782	TCTACAATCTGCTTCAAGCTACC	58.240	43.478	11.57	0.00	42.97	3.18
3490	7406	3.735240	TCAAGCTGCTGTTAAATTTTGCG	59.265	39.130	1.35	0.00	0.00	4.85

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.