Multiple sequence alignment - TraesCS2B01G516700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G516700 chr2B 100.000 6484 0 0 1 6484 711722708 711729191 0.000000e+00 11974.0
1 TraesCS2B01G516700 chr2B 83.105 1533 215 34 3412 4921 711867340 711868851 0.000000e+00 1356.0
2 TraesCS2B01G516700 chr2B 76.796 849 163 23 3412 4237 711321092 711320255 4.610000e-121 446.0
3 TraesCS2B01G516700 chr2B 76.586 867 151 37 3412 4237 711982149 711983004 4.650000e-116 429.0
4 TraesCS2B01G516700 chr2B 88.406 207 23 1 4925 5130 711868886 711869092 1.400000e-61 248.0
5 TraesCS2B01G516700 chr2B 82.569 109 15 4 5655 5762 514713045 514712940 6.920000e-15 93.5
6 TraesCS2B01G516700 chr2B 89.855 69 7 0 1218 1286 779259610 779259678 8.950000e-14 89.8
7 TraesCS2B01G516700 chr2B 97.778 45 1 0 1220 1264 711866971 711867015 1.940000e-10 78.7
8 TraesCS2B01G516700 chr2D 95.304 2321 96 7 3338 5649 588248390 588250706 0.000000e+00 3670.0
9 TraesCS2B01G516700 chr2D 82.473 1763 233 51 3412 5130 588435397 588437127 0.000000e+00 1474.0
10 TraesCS2B01G516700 chr2D 84.868 1553 117 53 479 2009 588245123 588246579 0.000000e+00 1458.0
11 TraesCS2B01G516700 chr2D 87.928 1168 75 34 2073 3200 588247243 588248384 0.000000e+00 1315.0
12 TraesCS2B01G516700 chr2D 93.878 490 27 3 5680 6169 631661295 631661781 0.000000e+00 736.0
13 TraesCS2B01G516700 chr2D 77.005 848 163 20 3412 4237 588175583 588174746 2.130000e-124 457.0
14 TraesCS2B01G516700 chr2D 98.054 257 5 0 6228 6484 631661909 631662165 1.280000e-121 448.0
15 TraesCS2B01G516700 chr2D 75.810 864 163 27 3412 4237 588453157 588454012 4.710000e-106 396.0
16 TraesCS2B01G516700 chr2D 84.385 301 30 10 1 288 588244471 588244767 4.950000e-71 279.0
17 TraesCS2B01G516700 chr2D 90.000 60 6 0 1205 1264 588435106 588435165 1.940000e-10 78.7
18 TraesCS2B01G516700 chr2D 93.617 47 3 0 1218 1264 588236068 588236114 3.240000e-08 71.3
19 TraesCS2B01G516700 chr2D 100.000 38 0 0 1910 1947 588247002 588247039 3.240000e-08 71.3
20 TraesCS2B01G516700 chr2A 93.676 2356 121 16 3341 5682 722839791 722842132 0.000000e+00 3500.0
21 TraesCS2B01G516700 chr2A 85.522 1485 108 46 541 1994 722837062 722838470 0.000000e+00 1452.0
22 TraesCS2B01G516700 chr2A 81.465 1748 263 50 3412 5130 723061457 723063172 0.000000e+00 1376.0
23 TraesCS2B01G516700 chr2A 87.515 825 58 21 2181 2984 722838865 722839665 0.000000e+00 911.0
24 TraesCS2B01G516700 chr2A 74.877 1421 267 58 3413 4777 777809590 777808204 1.220000e-156 564.0
25 TraesCS2B01G516700 chr2A 77.819 816 149 20 3412 4205 722756484 722755679 5.880000e-130 475.0
26 TraesCS2B01G516700 chr2A 75.376 865 167 26 3411 4237 723066383 723067239 6.140000e-100 375.0
27 TraesCS2B01G516700 chr2A 81.481 405 69 5 4375 4774 722755612 722755209 1.740000e-85 327.0
28 TraesCS2B01G516700 chr2A 79.177 413 75 7 4369 4774 778803079 778803487 6.400000e-70 276.0
29 TraesCS2B01G516700 chr2A 76.995 213 34 9 1074 1286 777615944 777615747 2.470000e-19 108.0
30 TraesCS2B01G516700 chr2A 81.967 122 22 0 4147 4268 508032286 508032407 3.200000e-18 104.0
31 TraesCS2B01G516700 chr2A 92.727 55 4 0 5680 5734 74060944 74060890 5.390000e-11 80.5
32 TraesCS2B01G516700 chr2A 97.778 45 1 0 1220 1264 723061132 723061176 1.940000e-10 78.7
33 TraesCS2B01G516700 chr2A 93.617 47 3 0 1218 1264 722831122 722831168 3.240000e-08 71.3
34 TraesCS2B01G516700 chrUn 90.661 257 20 2 6228 6484 154614547 154614799 8.050000e-89 339.0
35 TraesCS2B01G516700 chr7D 89.494 257 23 1 6228 6484 352369249 352369501 8.110000e-84 322.0
36 TraesCS2B01G516700 chr7D 93.182 132 9 0 3205 3336 136641672 136641541 1.840000e-45 195.0
37 TraesCS2B01G516700 chr7D 91.176 136 12 0 3205 3340 208729411 208729546 1.110000e-42 185.0
38 TraesCS2B01G516700 chr7D 100.000 28 0 0 351 378 16635034 16635061 1.200000e-02 52.8
39 TraesCS2B01G516700 chr7A 87.833 263 26 4 6225 6484 586278574 586278833 2.940000e-78 303.0
40 TraesCS2B01G516700 chr7A 93.220 59 4 0 5679 5737 586272043 586272101 3.220000e-13 87.9
41 TraesCS2B01G516700 chr7A 92.727 55 4 0 5680 5734 39014730 39014784 5.390000e-11 80.5
42 TraesCS2B01G516700 chr7B 89.744 195 17 3 6290 6484 642705062 642704871 5.020000e-61 246.0
43 TraesCS2B01G516700 chr7B 91.124 169 15 0 6233 6401 642702240 642702408 5.060000e-56 230.0
44 TraesCS2B01G516700 chr7B 88.506 87 6 3 5681 5767 551503731 551503649 1.150000e-17 102.0
45 TraesCS2B01G516700 chr3B 96.241 133 5 0 3204 3336 527660280 527660412 1.090000e-52 219.0
46 TraesCS2B01G516700 chr3B 93.284 134 9 0 3203 3336 21236142 21236009 1.430000e-46 198.0
47 TraesCS2B01G516700 chr3B 85.915 71 10 0 4949 5019 811448126 811448196 6.970000e-10 76.8
48 TraesCS2B01G516700 chr4B 94.853 136 7 0 3201 3336 228589493 228589628 5.090000e-51 213.0
49 TraesCS2B01G516700 chr5B 94.737 133 7 0 3204 3336 388353618 388353486 2.370000e-49 207.0
50 TraesCS2B01G516700 chr5B 94.697 132 7 0 3205 3336 107691609 107691478 8.520000e-49 206.0
51 TraesCS2B01G516700 chr5B 94.697 132 7 0 3205 3336 107718768 107718637 8.520000e-49 206.0
52 TraesCS2B01G516700 chr5B 92.481 133 6 2 3204 3336 651231258 651231130 3.090000e-43 187.0
53 TraesCS2B01G516700 chr6D 94.068 118 6 1 6235 6351 196598834 196598951 1.860000e-40 178.0
54 TraesCS2B01G516700 chr3A 92.373 118 8 1 6235 6351 378578119 378578002 4.020000e-37 167.0
55 TraesCS2B01G516700 chr3A 86.905 84 10 1 5679 5762 743988921 743989003 6.920000e-15 93.5
56 TraesCS2B01G516700 chr5A 94.340 53 3 0 5680 5732 502170811 502170759 1.500000e-11 82.4
57 TraesCS2B01G516700 chr3D 82.143 84 15 0 5679 5762 589736286 589736369 9.020000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G516700 chr2B 711722708 711729191 6483 False 11974.000000 11974 100.000000 1 6484 1 chr2B.!!$F1 6483
1 TraesCS2B01G516700 chr2B 711866971 711869092 2121 False 560.900000 1356 89.763000 1220 5130 3 chr2B.!!$F4 3910
2 TraesCS2B01G516700 chr2B 711320255 711321092 837 True 446.000000 446 76.796000 3412 4237 1 chr2B.!!$R2 825
3 TraesCS2B01G516700 chr2B 711982149 711983004 855 False 429.000000 429 76.586000 3412 4237 1 chr2B.!!$F2 825
4 TraesCS2B01G516700 chr2D 588244471 588250706 6235 False 1358.660000 3670 90.497000 1 5649 5 chr2D.!!$F3 5648
5 TraesCS2B01G516700 chr2D 588435106 588437127 2021 False 776.350000 1474 86.236500 1205 5130 2 chr2D.!!$F4 3925
6 TraesCS2B01G516700 chr2D 631661295 631662165 870 False 592.000000 736 95.966000 5680 6484 2 chr2D.!!$F5 804
7 TraesCS2B01G516700 chr2D 588174746 588175583 837 True 457.000000 457 77.005000 3412 4237 1 chr2D.!!$R1 825
8 TraesCS2B01G516700 chr2D 588453157 588454012 855 False 396.000000 396 75.810000 3412 4237 1 chr2D.!!$F2 825
9 TraesCS2B01G516700 chr2A 722837062 722842132 5070 False 1954.333333 3500 88.904333 541 5682 3 chr2A.!!$F4 5141
10 TraesCS2B01G516700 chr2A 723061132 723067239 6107 False 609.900000 1376 84.873000 1220 5130 3 chr2A.!!$F5 3910
11 TraesCS2B01G516700 chr2A 777808204 777809590 1386 True 564.000000 564 74.877000 3413 4777 1 chr2A.!!$R3 1364
12 TraesCS2B01G516700 chr2A 722755209 722756484 1275 True 401.000000 475 79.650000 3412 4774 2 chr2A.!!$R4 1362

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
665 1021 0.178995 CTCTAGTCCGGGACCCTACC 60.179 65.0 23.21 0.00 32.18 3.18 F
1024 1391 0.037326 ATTCGTTCTTGCGAGCTGGA 60.037 50.0 0.00 0.00 42.10 3.86 F
1059 1426 0.261991 TAGCTAGCTACCACCAGGCT 59.738 55.0 20.67 6.63 39.06 4.58 F
2305 3519 0.106369 TCCATAGACCGACCGACCAT 60.106 55.0 0.00 0.00 0.00 3.55 F
3214 4487 0.386113 GCTGCTTAGTACTCCCTCCG 59.614 60.0 0.00 0.00 0.00 4.63 F
3542 4816 0.817634 TTGTGAACTGGTTCGCCCTG 60.818 55.0 19.82 0.00 46.39 4.45 F
4079 5410 1.028868 ACTACTACGTGGTCGGGAGC 61.029 60.0 8.22 0.00 41.85 4.70 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2221 3435 0.033504 TTCCACGCAGAGACTTGGAC 59.966 55.000 0.00 0.00 37.67 4.02 R
2256 3470 0.371301 CATCACTGACGGCGATGTTG 59.629 55.000 16.62 5.39 33.41 3.33 R
2426 3644 0.606604 ACTTGCCGACGGTAATGACT 59.393 50.000 18.02 0.00 0.00 3.41 R
3397 4670 0.754472 ACCTGCAAAGCACAGCAAAT 59.246 45.000 0.00 0.00 40.73 2.32 R
5052 6439 1.803943 GGTGCCGTTGTTGAACACA 59.196 52.632 0.00 0.00 32.89 3.72 R
5215 6602 2.431454 CCATCCATCCGTCCGTCCA 61.431 63.158 0.00 0.00 0.00 4.02 R
5787 8586 0.179103 ACGGTCGAACGAAAACTGGT 60.179 50.000 32.41 0.00 37.61 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 3.712907 TAGCCCCACGTTGCTCCC 61.713 66.667 7.22 0.00 39.00 4.30
52 53 1.694696 GATAAGAAGGCATCCCCGAGT 59.305 52.381 0.00 0.00 39.21 4.18
88 89 2.224784 CGACCCCTTTCGGTTAACAAAG 59.775 50.000 8.10 9.34 35.79 2.77
93 94 4.659111 CCTTTCGGTTAACAAAGGGTTT 57.341 40.909 21.65 0.00 43.50 3.27
94 95 5.013568 CCTTTCGGTTAACAAAGGGTTTT 57.986 39.130 21.65 0.00 43.50 2.43
96 97 3.439895 TCGGTTAACAAAGGGTTTTGC 57.560 42.857 8.10 0.00 46.05 3.68
97 98 3.025262 TCGGTTAACAAAGGGTTTTGCT 58.975 40.909 8.10 0.00 46.05 3.91
98 99 3.447944 TCGGTTAACAAAGGGTTTTGCTT 59.552 39.130 8.10 0.00 46.05 3.91
100 101 4.678309 CGGTTAACAAAGGGTTTTGCTTCA 60.678 41.667 8.10 0.00 46.05 3.02
101 102 4.808895 GGTTAACAAAGGGTTTTGCTTCAG 59.191 41.667 8.10 0.00 46.05 3.02
102 103 2.602257 ACAAAGGGTTTTGCTTCAGC 57.398 45.000 0.25 0.00 46.05 4.26
103 104 1.138859 ACAAAGGGTTTTGCTTCAGCC 59.861 47.619 0.00 0.00 46.05 4.85
107 108 2.957474 AGGGTTTTGCTTCAGCCTTAA 58.043 42.857 0.00 0.00 37.66 1.85
110 111 5.083821 AGGGTTTTGCTTCAGCCTTAATAA 58.916 37.500 0.00 0.00 37.66 1.40
153 160 2.515991 GCGGCAAATGGATCCCGA 60.516 61.111 9.90 0.00 43.20 5.14
181 188 1.811941 GCCGGACCTGGATCTTGATTC 60.812 57.143 5.05 0.00 0.00 2.52
192 199 1.445410 CTTGATTCGTCGTCCGGCA 60.445 57.895 0.00 0.00 37.11 5.69
196 203 3.642778 ATTCGTCGTCCGGCAGGTG 62.643 63.158 1.81 0.00 39.05 4.00
204 211 3.636231 CCGGCAGGTGACCTTCCA 61.636 66.667 20.15 0.00 36.74 3.53
205 212 2.358737 CGGCAGGTGACCTTCCAC 60.359 66.667 20.15 1.83 36.74 4.02
213 220 2.143925 GGTGACCTTCCACGAAAAGAG 58.856 52.381 0.00 0.00 37.91 2.85
214 221 1.531578 GTGACCTTCCACGAAAAGAGC 59.468 52.381 0.00 0.00 0.00 4.09
224 231 1.615107 CGAAAAGAGCGACCGACCAC 61.615 60.000 0.00 0.00 0.00 4.16
235 242 1.896660 CCGACCACAACCACCCAAG 60.897 63.158 0.00 0.00 0.00 3.61
237 244 0.464735 CGACCACAACCACCCAAGAA 60.465 55.000 0.00 0.00 0.00 2.52
253 260 6.097696 CACCCAAGAAGAAAAAGAAAACCCTA 59.902 38.462 0.00 0.00 0.00 3.53
254 261 6.323996 ACCCAAGAAGAAAAAGAAAACCCTAG 59.676 38.462 0.00 0.00 0.00 3.02
255 262 6.549736 CCCAAGAAGAAAAAGAAAACCCTAGA 59.450 38.462 0.00 0.00 0.00 2.43
256 263 7.233553 CCCAAGAAGAAAAAGAAAACCCTAGAT 59.766 37.037 0.00 0.00 0.00 1.98
257 264 8.084684 CCAAGAAGAAAAAGAAAACCCTAGATG 58.915 37.037 0.00 0.00 0.00 2.90
258 265 7.767250 AGAAGAAAAAGAAAACCCTAGATGG 57.233 36.000 0.00 0.00 0.00 3.51
259 266 7.526918 AGAAGAAAAAGAAAACCCTAGATGGA 58.473 34.615 0.00 0.00 38.35 3.41
260 267 8.004801 AGAAGAAAAAGAAAACCCTAGATGGAA 58.995 33.333 0.00 0.00 38.35 3.53
261 268 7.767250 AGAAAAAGAAAACCCTAGATGGAAG 57.233 36.000 0.00 0.00 38.35 3.46
262 269 5.984695 AAAAGAAAACCCTAGATGGAAGC 57.015 39.130 0.00 0.00 38.35 3.86
263 270 3.653835 AGAAAACCCTAGATGGAAGCC 57.346 47.619 0.00 0.00 38.35 4.35
264 271 2.919602 AGAAAACCCTAGATGGAAGCCA 59.080 45.455 0.00 0.00 38.35 4.75
265 272 3.333680 AGAAAACCCTAGATGGAAGCCAA 59.666 43.478 0.00 0.00 36.95 4.52
266 273 3.372440 AAACCCTAGATGGAAGCCAAG 57.628 47.619 0.00 0.00 36.95 3.61
267 274 1.972588 ACCCTAGATGGAAGCCAAGT 58.027 50.000 0.00 0.00 36.95 3.16
268 275 1.840635 ACCCTAGATGGAAGCCAAGTC 59.159 52.381 0.00 0.00 36.95 3.01
269 276 2.122768 CCCTAGATGGAAGCCAAGTCT 58.877 52.381 0.00 0.00 36.95 3.24
270 277 2.103941 CCCTAGATGGAAGCCAAGTCTC 59.896 54.545 0.00 0.00 36.95 3.36
271 278 3.037549 CCTAGATGGAAGCCAAGTCTCT 58.962 50.000 0.00 0.00 36.95 3.10
272 279 3.181467 CCTAGATGGAAGCCAAGTCTCTG 60.181 52.174 0.00 0.00 36.95 3.35
273 280 2.544721 AGATGGAAGCCAAGTCTCTGA 58.455 47.619 0.00 0.00 36.95 3.27
274 281 2.909006 AGATGGAAGCCAAGTCTCTGAA 59.091 45.455 0.00 0.00 36.95 3.02
275 282 3.328931 AGATGGAAGCCAAGTCTCTGAAA 59.671 43.478 0.00 0.00 36.95 2.69
276 283 3.576078 TGGAAGCCAAGTCTCTGAAAA 57.424 42.857 0.00 0.00 0.00 2.29
277 284 3.214328 TGGAAGCCAAGTCTCTGAAAAC 58.786 45.455 0.00 0.00 0.00 2.43
278 285 3.214328 GGAAGCCAAGTCTCTGAAAACA 58.786 45.455 0.00 0.00 0.00 2.83
279 286 3.823304 GGAAGCCAAGTCTCTGAAAACAT 59.177 43.478 0.00 0.00 0.00 2.71
280 287 4.320788 GGAAGCCAAGTCTCTGAAAACATG 60.321 45.833 0.00 0.00 0.00 3.21
281 288 3.825328 AGCCAAGTCTCTGAAAACATGT 58.175 40.909 0.00 0.00 0.00 3.21
282 289 3.567164 AGCCAAGTCTCTGAAAACATGTG 59.433 43.478 0.00 0.00 0.00 3.21
283 290 3.316308 GCCAAGTCTCTGAAAACATGTGT 59.684 43.478 0.00 0.00 0.00 3.72
284 291 4.515191 GCCAAGTCTCTGAAAACATGTGTA 59.485 41.667 0.00 0.00 0.00 2.90
285 292 5.560953 GCCAAGTCTCTGAAAACATGTGTAC 60.561 44.000 0.00 0.00 0.00 2.90
286 293 5.760253 CCAAGTCTCTGAAAACATGTGTACT 59.240 40.000 0.00 0.00 0.00 2.73
287 294 6.929049 CCAAGTCTCTGAAAACATGTGTACTA 59.071 38.462 0.00 0.00 0.00 1.82
288 295 7.441157 CCAAGTCTCTGAAAACATGTGTACTAA 59.559 37.037 0.00 0.00 0.00 2.24
289 296 8.993121 CAAGTCTCTGAAAACATGTGTACTAAT 58.007 33.333 0.00 0.00 0.00 1.73
290 297 9.561069 AAGTCTCTGAAAACATGTGTACTAATT 57.439 29.630 0.00 0.00 0.00 1.40
291 298 9.561069 AGTCTCTGAAAACATGTGTACTAATTT 57.439 29.630 0.00 0.00 0.00 1.82
301 308 8.574196 ACATGTGTACTAATTTTCTTTTGTGC 57.426 30.769 0.00 0.00 0.00 4.57
302 309 8.413229 ACATGTGTACTAATTTTCTTTTGTGCT 58.587 29.630 0.00 0.00 0.00 4.40
303 310 8.693504 CATGTGTACTAATTTTCTTTTGTGCTG 58.306 33.333 0.00 0.00 0.00 4.41
304 311 7.990917 TGTGTACTAATTTTCTTTTGTGCTGA 58.009 30.769 0.00 0.00 0.00 4.26
305 312 8.462811 TGTGTACTAATTTTCTTTTGTGCTGAA 58.537 29.630 0.00 0.00 0.00 3.02
306 313 9.296400 GTGTACTAATTTTCTTTTGTGCTGAAA 57.704 29.630 0.00 0.00 0.00 2.69
307 314 9.862371 TGTACTAATTTTCTTTTGTGCTGAAAA 57.138 25.926 0.00 0.00 41.75 2.29
329 336 5.907866 AAAAATACTTTCCCCGTACCATG 57.092 39.130 0.00 0.00 0.00 3.66
330 337 2.632987 ATACTTTCCCCGTACCATGC 57.367 50.000 0.00 0.00 0.00 4.06
331 338 1.575419 TACTTTCCCCGTACCATGCT 58.425 50.000 0.00 0.00 0.00 3.79
332 339 1.575419 ACTTTCCCCGTACCATGCTA 58.425 50.000 0.00 0.00 0.00 3.49
333 340 2.124411 ACTTTCCCCGTACCATGCTAT 58.876 47.619 0.00 0.00 0.00 2.97
334 341 3.311091 ACTTTCCCCGTACCATGCTATA 58.689 45.455 0.00 0.00 0.00 1.31
335 342 3.712733 ACTTTCCCCGTACCATGCTATAA 59.287 43.478 0.00 0.00 0.00 0.98
336 343 4.202326 ACTTTCCCCGTACCATGCTATAAG 60.202 45.833 0.00 0.00 0.00 1.73
337 344 3.247948 TCCCCGTACCATGCTATAAGA 57.752 47.619 0.00 0.00 0.00 2.10
338 345 3.162666 TCCCCGTACCATGCTATAAGAG 58.837 50.000 0.00 0.00 0.00 2.85
339 346 2.897969 CCCCGTACCATGCTATAAGAGT 59.102 50.000 0.00 0.00 0.00 3.24
340 347 3.306088 CCCCGTACCATGCTATAAGAGTG 60.306 52.174 0.00 0.00 0.00 3.51
341 348 3.321111 CCCGTACCATGCTATAAGAGTGT 59.679 47.826 0.00 0.00 0.00 3.55
342 349 4.202223 CCCGTACCATGCTATAAGAGTGTT 60.202 45.833 0.00 0.00 0.00 3.32
343 350 5.357257 CCGTACCATGCTATAAGAGTGTTT 58.643 41.667 0.00 0.00 0.00 2.83
344 351 5.815740 CCGTACCATGCTATAAGAGTGTTTT 59.184 40.000 0.00 0.00 0.00 2.43
345 352 6.315393 CCGTACCATGCTATAAGAGTGTTTTT 59.685 38.462 0.00 0.00 0.00 1.94
346 353 7.180079 CGTACCATGCTATAAGAGTGTTTTTG 58.820 38.462 0.00 0.00 0.00 2.44
347 354 7.064134 CGTACCATGCTATAAGAGTGTTTTTGA 59.936 37.037 0.00 0.00 0.00 2.69
348 355 7.145932 ACCATGCTATAAGAGTGTTTTTGAC 57.854 36.000 0.00 0.00 0.00 3.18
349 356 6.714810 ACCATGCTATAAGAGTGTTTTTGACA 59.285 34.615 0.00 0.00 35.42 3.58
397 404 8.515927 TTATGGTATAGTGAGAGTAGTAGGGA 57.484 38.462 0.00 0.00 0.00 4.20
398 405 6.836714 TGGTATAGTGAGAGTAGTAGGGAA 57.163 41.667 0.00 0.00 0.00 3.97
399 406 7.217028 TGGTATAGTGAGAGTAGTAGGGAAA 57.783 40.000 0.00 0.00 0.00 3.13
400 407 7.823635 TGGTATAGTGAGAGTAGTAGGGAAAT 58.176 38.462 0.00 0.00 0.00 2.17
401 408 7.724506 TGGTATAGTGAGAGTAGTAGGGAAATG 59.275 40.741 0.00 0.00 0.00 2.32
402 409 6.658188 ATAGTGAGAGTAGTAGGGAAATGC 57.342 41.667 0.00 0.00 0.00 3.56
403 410 4.353777 AGTGAGAGTAGTAGGGAAATGCA 58.646 43.478 0.00 0.00 0.00 3.96
404 411 4.160626 AGTGAGAGTAGTAGGGAAATGCAC 59.839 45.833 0.00 0.00 0.00 4.57
405 412 4.081642 GTGAGAGTAGTAGGGAAATGCACA 60.082 45.833 0.00 0.00 0.00 4.57
406 413 4.716784 TGAGAGTAGTAGGGAAATGCACAT 59.283 41.667 0.00 0.00 0.00 3.21
407 414 5.189736 TGAGAGTAGTAGGGAAATGCACATT 59.810 40.000 0.00 0.00 0.00 2.71
408 415 5.675538 AGAGTAGTAGGGAAATGCACATTC 58.324 41.667 5.67 5.67 0.00 2.67
409 416 5.426833 AGAGTAGTAGGGAAATGCACATTCT 59.573 40.000 12.37 0.07 0.00 2.40
410 417 6.067217 AGTAGTAGGGAAATGCACATTCTT 57.933 37.500 12.37 5.78 0.00 2.52
411 418 6.116126 AGTAGTAGGGAAATGCACATTCTTC 58.884 40.000 12.37 6.84 0.00 2.87
412 419 4.922206 AGTAGGGAAATGCACATTCTTCA 58.078 39.130 12.37 0.00 0.00 3.02
413 420 5.513233 AGTAGGGAAATGCACATTCTTCAT 58.487 37.500 12.37 0.27 0.00 2.57
414 421 4.730949 AGGGAAATGCACATTCTTCATG 57.269 40.909 12.37 0.00 39.07 3.07
445 452 3.512680 ACTAATTCGAAGCCAAGTCTCG 58.487 45.455 3.35 0.00 0.00 4.04
446 453 1.079503 AATTCGAAGCCAAGTCTCGC 58.920 50.000 3.35 0.00 0.00 5.03
453 463 0.663153 AGCCAAGTCTCGCAAAACAC 59.337 50.000 0.00 0.00 0.00 3.32
467 477 4.855388 CGCAAAACACGTCATACTAGTACT 59.145 41.667 4.31 0.00 0.00 2.73
469 479 6.524239 CGCAAAACACGTCATACTAGTACTAA 59.476 38.462 4.31 0.00 0.00 2.24
470 480 7.460637 CGCAAAACACGTCATACTAGTACTAAC 60.461 40.741 4.31 3.18 0.00 2.34
471 481 7.460637 GCAAAACACGTCATACTAGTACTAACG 60.461 40.741 22.22 22.22 0.00 3.18
472 482 5.725110 ACACGTCATACTAGTACTAACGG 57.275 43.478 25.13 19.21 0.00 4.44
473 483 4.034510 ACACGTCATACTAGTACTAACGGC 59.965 45.833 25.13 5.80 0.00 5.68
474 484 3.246226 ACGTCATACTAGTACTAACGGCG 59.754 47.826 25.13 16.36 0.00 6.46
475 485 3.363378 CGTCATACTAGTACTAACGGCGG 60.363 52.174 13.24 0.00 0.00 6.13
496 846 0.940047 GCGCAGAGTATTACGGGAGC 60.940 60.000 0.30 0.00 0.00 4.70
511 861 3.429080 GAGCCGGAGAGCAGAGCAG 62.429 68.421 5.05 0.00 34.23 4.24
513 863 4.527583 CCGGAGAGCAGAGCAGGC 62.528 72.222 0.00 0.00 0.00 4.85
514 864 3.767806 CGGAGAGCAGAGCAGGCA 61.768 66.667 0.00 0.00 0.00 4.75
516 866 2.125188 GAGAGCAGAGCAGGCACC 60.125 66.667 0.00 0.00 0.00 5.01
517 867 2.926779 AGAGCAGAGCAGGCACCA 60.927 61.111 0.00 0.00 0.00 4.17
518 868 2.745492 GAGCAGAGCAGGCACCAC 60.745 66.667 0.00 0.00 0.00 4.16
519 869 3.541950 GAGCAGAGCAGGCACCACA 62.542 63.158 0.00 0.00 0.00 4.17
520 870 3.054503 GCAGAGCAGGCACCACAG 61.055 66.667 0.00 0.00 0.00 3.66
521 871 3.054503 CAGAGCAGGCACCACAGC 61.055 66.667 0.00 0.00 0.00 4.40
522 872 3.563224 AGAGCAGGCACCACAGCA 61.563 61.111 0.00 0.00 35.83 4.41
523 873 2.360852 GAGCAGGCACCACAGCAT 60.361 61.111 0.00 0.00 35.83 3.79
532 882 3.337619 CCACAGCATGGCTATCGC 58.662 61.111 0.00 0.00 43.24 4.58
612 963 3.353836 GCCTCTCGCGTTTGCCAA 61.354 61.111 5.77 0.00 38.08 4.52
616 967 0.586319 CTCTCGCGTTTGCCAAAAGA 59.414 50.000 5.77 0.00 38.08 2.52
623 974 2.223711 GCGTTTGCCAAAAGAGGAAGAA 60.224 45.455 7.31 0.00 33.98 2.52
626 977 4.504097 CGTTTGCCAAAAGAGGAAGAAAAG 59.496 41.667 0.00 0.00 0.00 2.27
632 983 4.322273 CCAAAAGAGGAAGAAAAGATGGCC 60.322 45.833 0.00 0.00 0.00 5.36
635 991 2.095461 GAGGAAGAAAAGATGGCCACC 58.905 52.381 8.16 0.00 0.00 4.61
646 1002 3.290710 AGATGGCCACCAACATGATTAC 58.709 45.455 8.16 0.00 36.95 1.89
648 1004 2.722094 TGGCCACCAACATGATTACTC 58.278 47.619 0.00 0.00 0.00 2.59
649 1005 2.308570 TGGCCACCAACATGATTACTCT 59.691 45.455 0.00 0.00 0.00 3.24
650 1006 3.521531 TGGCCACCAACATGATTACTCTA 59.478 43.478 0.00 0.00 0.00 2.43
651 1007 4.130118 GGCCACCAACATGATTACTCTAG 58.870 47.826 0.00 0.00 0.00 2.43
653 1009 4.811557 GCCACCAACATGATTACTCTAGTC 59.188 45.833 0.00 0.00 0.00 2.59
654 1010 5.360591 CCACCAACATGATTACTCTAGTCC 58.639 45.833 0.00 0.00 0.00 3.85
657 1013 4.501571 CCAACATGATTACTCTAGTCCGGG 60.502 50.000 0.00 0.00 0.00 5.73
658 1014 4.180377 ACATGATTACTCTAGTCCGGGA 57.820 45.455 0.00 0.00 0.00 5.14
659 1015 3.890147 ACATGATTACTCTAGTCCGGGAC 59.110 47.826 19.61 19.61 0.00 4.46
660 1016 2.941480 TGATTACTCTAGTCCGGGACC 58.059 52.381 23.21 6.06 32.18 4.46
661 1017 2.237643 GATTACTCTAGTCCGGGACCC 58.762 57.143 23.21 0.00 32.18 4.46
662 1018 1.302907 TTACTCTAGTCCGGGACCCT 58.697 55.000 23.21 8.83 32.18 4.34
663 1019 2.196742 TACTCTAGTCCGGGACCCTA 57.803 55.000 23.21 9.53 32.18 3.53
665 1021 0.178995 CTCTAGTCCGGGACCCTACC 60.179 65.000 23.21 0.00 32.18 3.18
673 1029 3.925090 GGACCCTACCGGCCGATG 61.925 72.222 30.73 14.21 33.26 3.84
674 1030 4.603946 GACCCTACCGGCCGATGC 62.604 72.222 30.73 4.44 33.26 3.91
676 1032 3.941188 CCCTACCGGCCGATGCAT 61.941 66.667 30.73 0.00 40.13 3.96
677 1033 2.111043 CCTACCGGCCGATGCATT 59.889 61.111 30.73 5.62 40.13 3.56
678 1034 1.369692 CCTACCGGCCGATGCATTA 59.630 57.895 30.73 6.55 40.13 1.90
679 1035 0.250124 CCTACCGGCCGATGCATTAA 60.250 55.000 30.73 0.00 40.13 1.40
680 1036 1.610624 CCTACCGGCCGATGCATTAAT 60.611 52.381 30.73 2.38 40.13 1.40
724 1080 2.158943 GGGTGGATAAGAAGGAAGGACG 60.159 54.545 0.00 0.00 0.00 4.79
790 1146 1.983224 CCCACTGTTGATCCCGACT 59.017 57.895 0.00 0.00 0.00 4.18
791 1147 1.191535 CCCACTGTTGATCCCGACTA 58.808 55.000 0.00 0.00 0.00 2.59
792 1148 1.762957 CCCACTGTTGATCCCGACTAT 59.237 52.381 0.00 0.00 0.00 2.12
799 1155 4.900684 TGTTGATCCCGACTATTTTGTCA 58.099 39.130 0.00 0.00 36.82 3.58
808 1164 1.349688 ACTATTTTGTCACCTGGCCGA 59.650 47.619 0.00 0.00 0.00 5.54
897 1256 3.120854 CGAAAAGAGAAGGAGAAACTGCG 60.121 47.826 0.00 0.00 0.00 5.18
899 1258 1.633774 AGAGAAGGAGAAACTGCGGA 58.366 50.000 0.00 0.00 0.00 5.54
900 1259 1.548269 AGAGAAGGAGAAACTGCGGAG 59.452 52.381 0.85 0.85 0.00 4.63
901 1260 1.273886 GAGAAGGAGAAACTGCGGAGT 59.726 52.381 2.68 2.68 0.00 3.85
902 1261 2.492484 GAGAAGGAGAAACTGCGGAGTA 59.508 50.000 10.98 0.00 0.00 2.59
921 1280 0.941963 AGTAGTAGATGGGAGGGCCA 59.058 55.000 6.18 0.00 35.15 5.36
944 1303 0.540365 CCAAGTGTCCTGCCCATGTT 60.540 55.000 0.00 0.00 0.00 2.71
993 1352 2.876368 AATTTGGAGGCTCCGAGGCG 62.876 60.000 27.58 0.00 46.58 5.52
1009 1376 2.537560 GCGGGATGCCACTCATTCG 61.538 63.158 3.39 0.00 37.76 3.34
1013 1380 1.407437 GGGATGCCACTCATTCGTTCT 60.407 52.381 0.00 0.00 35.05 3.01
1014 1381 2.359900 GGATGCCACTCATTCGTTCTT 58.640 47.619 0.00 0.00 35.05 2.52
1024 1391 0.037326 ATTCGTTCTTGCGAGCTGGA 60.037 50.000 0.00 0.00 42.10 3.86
1058 1425 0.389757 GTAGCTAGCTACCACCAGGC 59.610 60.000 35.21 14.74 42.11 4.85
1059 1426 0.261991 TAGCTAGCTACCACCAGGCT 59.738 55.000 20.67 6.63 39.06 4.58
1061 1428 1.736586 CTAGCTACCACCAGGCTCG 59.263 63.158 0.00 0.00 39.06 5.03
1062 1429 2.356818 CTAGCTACCACCAGGCTCGC 62.357 65.000 0.00 0.00 39.06 5.03
1065 1432 3.376935 CTACCACCAGGCTCGCAGG 62.377 68.421 0.00 0.00 39.06 4.85
1266 1637 3.521947 AGAACTGGCAGAACGGTATAC 57.478 47.619 23.66 0.00 0.00 1.47
1268 1639 2.667473 ACTGGCAGAACGGTATACAC 57.333 50.000 23.66 0.00 0.00 2.90
1270 1641 2.500098 ACTGGCAGAACGGTATACACAT 59.500 45.455 23.66 0.00 0.00 3.21
1271 1642 2.866156 CTGGCAGAACGGTATACACATG 59.134 50.000 9.42 0.00 0.00 3.21
1273 1644 3.055747 TGGCAGAACGGTATACACATGAA 60.056 43.478 5.01 0.00 0.00 2.57
1276 1647 4.032900 GCAGAACGGTATACACATGAACTG 59.967 45.833 5.01 5.90 0.00 3.16
1349 1728 4.595538 TTTCTGCGCGTGTCCGGT 62.596 61.111 8.43 0.00 33.68 5.28
1463 1845 2.503765 TCCTTGCTAATCCATTCACGGA 59.496 45.455 0.00 0.00 40.07 4.69
1615 2000 1.078759 GCACGACGACCTGGAATGAG 61.079 60.000 0.00 0.00 0.00 2.90
1698 2093 0.326264 GGATTGGTGAGCAGGAGTGT 59.674 55.000 0.00 0.00 0.00 3.55
1710 2105 1.912043 CAGGAGTGTGAAGGGGAGATT 59.088 52.381 0.00 0.00 0.00 2.40
1711 2106 2.093235 CAGGAGTGTGAAGGGGAGATTC 60.093 54.545 0.00 0.00 0.00 2.52
1712 2107 2.192263 GGAGTGTGAAGGGGAGATTCT 58.808 52.381 0.00 0.00 0.00 2.40
1713 2108 2.093235 GGAGTGTGAAGGGGAGATTCTG 60.093 54.545 0.00 0.00 0.00 3.02
1714 2109 2.834549 GAGTGTGAAGGGGAGATTCTGA 59.165 50.000 0.00 0.00 0.00 3.27
1715 2110 3.251484 AGTGTGAAGGGGAGATTCTGAA 58.749 45.455 0.00 0.00 0.00 3.02
1716 2111 3.262915 AGTGTGAAGGGGAGATTCTGAAG 59.737 47.826 0.00 0.00 0.00 3.02
1871 2274 2.650322 CCTACGTGGGCAAAATGGTAT 58.350 47.619 4.50 0.00 0.00 2.73
1872 2275 3.811083 CCTACGTGGGCAAAATGGTATA 58.189 45.455 4.50 0.00 0.00 1.47
1885 2288 8.495148 GGCAAAATGGTATAAAGTTTCTTGTTG 58.505 33.333 0.00 0.00 0.00 3.33
1886 2289 9.255304 GCAAAATGGTATAAAGTTTCTTGTTGA 57.745 29.630 0.00 0.00 0.00 3.18
1943 2352 3.072468 TCCCGCTCCCGATTCGTT 61.072 61.111 5.20 0.00 36.29 3.85
1957 2366 2.440539 TTCGTTGAGAGAGTTGAGCC 57.559 50.000 0.00 0.00 0.00 4.70
1972 2381 1.211703 TGAGCCTTGGTTGTTCAGTCA 59.788 47.619 0.00 0.00 0.00 3.41
1977 2386 2.227388 CCTTGGTTGTTCAGTCATCAGC 59.773 50.000 0.00 0.00 0.00 4.26
1985 2394 4.206375 TGTTCAGTCATCAGCCAGAAAAA 58.794 39.130 0.00 0.00 0.00 1.94
2009 2988 5.749109 ACACGTTCTGTCAAACAAACAAAAA 59.251 32.000 0.00 0.00 0.00 1.94
2071 3116 2.294074 TCTAACACAAGCAAGCCGTTT 58.706 42.857 0.00 0.00 0.00 3.60
2087 3132 1.801025 CGTTTGGTGGGACAAAAGCAC 60.801 52.381 0.00 0.00 44.16 4.40
2115 3162 6.622833 AAAAAGTTGATTTGGAAGCCATTG 57.377 33.333 0.00 0.00 31.53 2.82
2134 3181 6.456988 GCCATTGGTAGTTAGATGAAAGAACG 60.457 42.308 4.26 0.00 0.00 3.95
2137 3184 9.314321 CATTGGTAGTTAGATGAAAGAACGTAT 57.686 33.333 0.00 0.00 0.00 3.06
2221 3435 5.173131 GTGTTTAGGCTTTCATCGTTGTTTG 59.827 40.000 0.00 0.00 0.00 2.93
2223 3437 3.626028 AGGCTTTCATCGTTGTTTGTC 57.374 42.857 0.00 0.00 0.00 3.18
2228 3442 4.733523 GCTTTCATCGTTGTTTGTCCAAGT 60.734 41.667 0.00 0.00 0.00 3.16
2229 3443 4.545823 TTCATCGTTGTTTGTCCAAGTC 57.454 40.909 0.00 0.00 0.00 3.01
2256 3470 2.544267 GTGGAATTATGCTGGTCGTAGC 59.456 50.000 0.00 0.00 43.95 3.58
2266 3480 2.514013 GGTCGTAGCAACATCGCCG 61.514 63.158 0.00 0.00 0.00 6.46
2305 3519 0.106369 TCCATAGACCGACCGACCAT 60.106 55.000 0.00 0.00 0.00 3.55
2426 3644 1.743623 CACCGGCCTGCATCGTTTA 60.744 57.895 0.00 0.00 0.00 2.01
2446 3664 1.001633 AGTCATTACCGTCGGCAAGTT 59.998 47.619 12.28 0.00 0.00 2.66
2448 3666 1.801771 TCATTACCGTCGGCAAGTTTG 59.198 47.619 12.28 0.26 0.00 2.93
2450 3668 1.219646 TTACCGTCGGCAAGTTTGTC 58.780 50.000 12.28 0.00 0.00 3.18
2481 3703 3.287222 TCCTGGTCTTGACCAAAGTTTG 58.713 45.455 21.12 8.73 39.61 2.93
2534 3759 3.512978 AAAAACATGGCGATGTGGC 57.487 47.368 15.55 0.00 42.30 5.01
2568 3822 8.309163 TGATAAAAAGACATGGCAATTTTGAC 57.691 30.769 19.69 14.68 36.50 3.18
2569 3823 8.149647 TGATAAAAAGACATGGCAATTTTGACT 58.850 29.630 19.69 8.64 37.03 3.41
2570 3824 9.638239 GATAAAAAGACATGGCAATTTTGACTA 57.362 29.630 19.69 5.63 37.03 2.59
2571 3825 7.951530 AAAAAGACATGGCAATTTTGACTAG 57.048 32.000 12.69 0.00 37.03 2.57
2572 3826 6.899393 AAAGACATGGCAATTTTGACTAGA 57.101 33.333 0.00 0.00 37.03 2.43
2573 3827 6.899393 AAGACATGGCAATTTTGACTAGAA 57.101 33.333 0.00 0.00 37.03 2.10
2574 3828 6.899393 AGACATGGCAATTTTGACTAGAAA 57.101 33.333 0.00 0.00 37.03 2.52
2575 3829 7.288810 AGACATGGCAATTTTGACTAGAAAA 57.711 32.000 0.00 0.00 37.03 2.29
2576 3830 7.725251 AGACATGGCAATTTTGACTAGAAAAA 58.275 30.769 0.00 3.67 37.03 1.94
2577 3831 7.869429 AGACATGGCAATTTTGACTAGAAAAAG 59.131 33.333 0.00 0.00 37.03 2.27
2578 3832 6.424812 ACATGGCAATTTTGACTAGAAAAAGC 59.575 34.615 0.00 3.25 37.03 3.51
2579 3833 5.911752 TGGCAATTTTGACTAGAAAAAGCA 58.088 33.333 0.00 0.00 37.03 3.91
2580 3834 6.523840 TGGCAATTTTGACTAGAAAAAGCAT 58.476 32.000 0.00 0.00 37.03 3.79
2581 3835 7.665690 TGGCAATTTTGACTAGAAAAAGCATA 58.334 30.769 0.00 0.00 37.03 3.14
2582 3836 8.147058 TGGCAATTTTGACTAGAAAAAGCATAA 58.853 29.630 0.00 0.00 37.03 1.90
2602 3856 9.228949 AGCATAATAAATTTGATTTTTGCACCA 57.771 25.926 18.42 0.00 33.82 4.17
2607 3861 6.607735 AAATTTGATTTTTGCACCAGACTG 57.392 33.333 0.00 0.00 0.00 3.51
2744 4007 6.536582 CAGTGAACACTCAACTTATCCATAGG 59.463 42.308 4.38 0.00 40.20 2.57
2745 4008 5.294552 GTGAACACTCAACTTATCCATAGGC 59.705 44.000 0.00 0.00 31.88 3.93
2746 4009 4.060038 ACACTCAACTTATCCATAGGCG 57.940 45.455 0.00 0.00 0.00 5.52
2747 4010 3.704566 ACACTCAACTTATCCATAGGCGA 59.295 43.478 0.00 0.00 0.00 5.54
2748 4011 4.345257 ACACTCAACTTATCCATAGGCGAT 59.655 41.667 0.00 0.00 0.00 4.58
2749 4012 5.538813 ACACTCAACTTATCCATAGGCGATA 59.461 40.000 0.00 0.00 0.00 2.92
2750 4013 6.096036 CACTCAACTTATCCATAGGCGATAG 58.904 44.000 0.00 0.00 0.00 2.08
2751 4014 5.186021 ACTCAACTTATCCATAGGCGATAGG 59.814 44.000 0.00 0.00 0.00 2.57
2847 4114 2.435410 GGTCCGGCCGGTGTTTAG 60.435 66.667 41.57 16.70 36.47 1.85
2848 4115 2.344872 GTCCGGCCGGTGTTTAGT 59.655 61.111 41.57 0.00 36.47 2.24
2849 4116 2.030958 GTCCGGCCGGTGTTTAGTG 61.031 63.158 41.57 15.10 36.47 2.74
2850 4117 3.428282 CCGGCCGGTGTTTAGTGC 61.428 66.667 36.64 0.00 0.00 4.40
3015 4287 2.126596 TGGCCTGCACTTTGGTGTG 61.127 57.895 3.32 0.00 44.65 3.82
3017 4289 1.360192 GCCTGCACTTTGGTGTGTC 59.640 57.895 0.00 0.00 44.65 3.67
3019 4291 0.664761 CCTGCACTTTGGTGTGTCTG 59.335 55.000 0.00 0.00 44.65 3.51
3020 4292 1.382522 CTGCACTTTGGTGTGTCTGT 58.617 50.000 0.00 0.00 44.65 3.41
3021 4293 1.745087 CTGCACTTTGGTGTGTCTGTT 59.255 47.619 0.00 0.00 44.65 3.16
3022 4294 1.472082 TGCACTTTGGTGTGTCTGTTG 59.528 47.619 0.00 0.00 44.65 3.33
3023 4295 1.798813 GCACTTTGGTGTGTCTGTTGC 60.799 52.381 0.00 0.00 44.65 4.17
3037 4309 1.003545 CTGTTGCGTCCAAGTGTTCAG 60.004 52.381 0.00 0.00 0.00 3.02
3087 4360 6.735130 TCTTGCTAAAGTTAAAAAGACAGGC 58.265 36.000 0.00 0.00 34.78 4.85
3096 4369 5.710567 AGTTAAAAAGACAGGCCATCCTAAC 59.289 40.000 5.01 7.88 41.93 2.34
3101 4374 2.171448 AGACAGGCCATCCTAACATGTC 59.829 50.000 5.01 6.70 41.93 3.06
3130 4403 9.467990 CAAATTGAATCAAATTTTGCTCATACG 57.532 29.630 0.00 0.00 37.59 3.06
3138 4411 0.739462 TTTGCTCATACGGTCAGGCG 60.739 55.000 0.00 0.00 0.00 5.52
3153 4426 4.436998 GCGAGGACCAGTGACGGG 62.437 72.222 0.00 0.00 0.00 5.28
3161 4434 2.283529 CCAGTGACGGGGCAGTAGT 61.284 63.158 0.00 0.00 0.00 2.73
3200 4473 5.116084 TCTGGAATTATTTACCTGCTGCT 57.884 39.130 0.00 0.00 0.00 4.24
3202 4475 6.658849 TCTGGAATTATTTACCTGCTGCTTA 58.341 36.000 0.00 0.00 0.00 3.09
3203 4476 6.767902 TCTGGAATTATTTACCTGCTGCTTAG 59.232 38.462 0.00 0.00 0.00 2.18
3205 4478 7.570132 TGGAATTATTTACCTGCTGCTTAGTA 58.430 34.615 0.00 0.00 0.00 1.82
3206 4479 7.497909 TGGAATTATTTACCTGCTGCTTAGTAC 59.502 37.037 0.00 0.00 0.00 2.73
3207 4480 7.715686 GGAATTATTTACCTGCTGCTTAGTACT 59.284 37.037 0.00 0.00 0.00 2.73
3208 4481 8.664211 AATTATTTACCTGCTGCTTAGTACTC 57.336 34.615 0.00 0.00 0.00 2.59
3209 4482 4.467198 TTTACCTGCTGCTTAGTACTCC 57.533 45.455 0.00 0.00 0.00 3.85
3210 4483 1.196012 ACCTGCTGCTTAGTACTCCC 58.804 55.000 0.00 0.00 0.00 4.30
3211 4484 1.273324 ACCTGCTGCTTAGTACTCCCT 60.273 52.381 0.00 0.00 0.00 4.20
3212 4485 1.410882 CCTGCTGCTTAGTACTCCCTC 59.589 57.143 0.00 0.00 0.00 4.30
3213 4486 1.410882 CTGCTGCTTAGTACTCCCTCC 59.589 57.143 0.00 0.00 0.00 4.30
3214 4487 0.386113 GCTGCTTAGTACTCCCTCCG 59.614 60.000 0.00 0.00 0.00 4.63
3215 4488 1.765230 CTGCTTAGTACTCCCTCCGT 58.235 55.000 0.00 0.00 0.00 4.69
3216 4489 2.100989 CTGCTTAGTACTCCCTCCGTT 58.899 52.381 0.00 0.00 0.00 4.44
3217 4490 2.496470 CTGCTTAGTACTCCCTCCGTTT 59.504 50.000 0.00 0.00 0.00 3.60
3218 4491 2.494870 TGCTTAGTACTCCCTCCGTTTC 59.505 50.000 0.00 0.00 0.00 2.78
3219 4492 2.759535 GCTTAGTACTCCCTCCGTTTCT 59.240 50.000 0.00 0.00 0.00 2.52
3220 4493 3.195182 GCTTAGTACTCCCTCCGTTTCTT 59.805 47.826 0.00 0.00 0.00 2.52
3221 4494 4.322574 GCTTAGTACTCCCTCCGTTTCTTT 60.323 45.833 0.00 0.00 0.00 2.52
3222 4495 5.791666 CTTAGTACTCCCTCCGTTTCTTTT 58.208 41.667 0.00 0.00 0.00 2.27
3223 4496 4.701651 AGTACTCCCTCCGTTTCTTTTT 57.298 40.909 0.00 0.00 0.00 1.94
3224 4497 5.813513 AGTACTCCCTCCGTTTCTTTTTA 57.186 39.130 0.00 0.00 0.00 1.52
3225 4498 5.791666 AGTACTCCCTCCGTTTCTTTTTAG 58.208 41.667 0.00 0.00 0.00 1.85
3226 4499 4.701651 ACTCCCTCCGTTTCTTTTTAGT 57.298 40.909 0.00 0.00 0.00 2.24
3227 4500 5.045012 ACTCCCTCCGTTTCTTTTTAGTT 57.955 39.130 0.00 0.00 0.00 2.24
3228 4501 5.061853 ACTCCCTCCGTTTCTTTTTAGTTC 58.938 41.667 0.00 0.00 0.00 3.01
3229 4502 5.038651 TCCCTCCGTTTCTTTTTAGTTCA 57.961 39.130 0.00 0.00 0.00 3.18
3230 4503 5.061179 TCCCTCCGTTTCTTTTTAGTTCAG 58.939 41.667 0.00 0.00 0.00 3.02
3231 4504 5.061179 CCCTCCGTTTCTTTTTAGTTCAGA 58.939 41.667 0.00 0.00 0.00 3.27
3232 4505 5.705905 CCCTCCGTTTCTTTTTAGTTCAGAT 59.294 40.000 0.00 0.00 0.00 2.90
3233 4506 6.877322 CCCTCCGTTTCTTTTTAGTTCAGATA 59.123 38.462 0.00 0.00 0.00 1.98
3234 4507 7.553044 CCCTCCGTTTCTTTTTAGTTCAGATAT 59.447 37.037 0.00 0.00 0.00 1.63
3235 4508 9.595823 CCTCCGTTTCTTTTTAGTTCAGATATA 57.404 33.333 0.00 0.00 0.00 0.86
3279 4552 8.051901 ACTTTGTAAAGTTTGACTAGCTTTGT 57.948 30.769 8.55 0.00 46.52 2.83
3280 4553 9.169592 ACTTTGTAAAGTTTGACTAGCTTTGTA 57.830 29.630 8.55 0.00 46.52 2.41
3281 4554 9.651718 CTTTGTAAAGTTTGACTAGCTTTGTAG 57.348 33.333 8.55 0.00 34.69 2.74
3282 4555 7.724305 TGTAAAGTTTGACTAGCTTTGTAGG 57.276 36.000 8.55 0.00 34.69 3.18
3283 4556 7.502696 TGTAAAGTTTGACTAGCTTTGTAGGA 58.497 34.615 8.55 0.00 34.69 2.94
3284 4557 7.988599 TGTAAAGTTTGACTAGCTTTGTAGGAA 59.011 33.333 8.55 0.00 34.69 3.36
3285 4558 7.875327 AAAGTTTGACTAGCTTTGTAGGAAA 57.125 32.000 0.00 0.00 32.03 3.13
3286 4559 7.875327 AAGTTTGACTAGCTTTGTAGGAAAA 57.125 32.000 0.00 0.00 0.00 2.29
3287 4560 7.497925 AGTTTGACTAGCTTTGTAGGAAAAG 57.502 36.000 0.00 0.00 39.66 2.27
3288 4561 7.280356 AGTTTGACTAGCTTTGTAGGAAAAGA 58.720 34.615 0.00 0.00 39.12 2.52
3289 4562 7.939588 AGTTTGACTAGCTTTGTAGGAAAAGAT 59.060 33.333 0.00 0.00 39.12 2.40
3290 4563 9.216117 GTTTGACTAGCTTTGTAGGAAAAGATA 57.784 33.333 0.00 0.00 39.12 1.98
3291 4564 9.959721 TTTGACTAGCTTTGTAGGAAAAGATAT 57.040 29.630 0.00 0.00 37.39 1.63
3301 4574 9.997482 TTTGTAGGAAAAGATATAAACATTCGC 57.003 29.630 0.00 0.00 0.00 4.70
3302 4575 7.847487 TGTAGGAAAAGATATAAACATTCGCG 58.153 34.615 0.00 0.00 0.00 5.87
3303 4576 7.707464 TGTAGGAAAAGATATAAACATTCGCGA 59.293 33.333 3.71 3.71 0.00 5.87
3304 4577 7.730364 AGGAAAAGATATAAACATTCGCGAT 57.270 32.000 10.88 0.00 0.00 4.58
3305 4578 8.827177 AGGAAAAGATATAAACATTCGCGATA 57.173 30.769 10.88 0.00 0.00 2.92
3306 4579 9.436957 AGGAAAAGATATAAACATTCGCGATAT 57.563 29.630 10.88 7.05 0.00 1.63
3307 4580 9.478019 GGAAAAGATATAAACATTCGCGATATG 57.522 33.333 21.64 21.64 0.00 1.78
3318 4591 9.515020 AAACATTCGCGATATGAAATTAACATT 57.485 25.926 26.77 12.06 0.00 2.71
3391 4664 3.547054 AATTTTATCCTGACGGCGGTA 57.453 42.857 13.24 0.00 0.00 4.02
3392 4665 3.547054 ATTTTATCCTGACGGCGGTAA 57.453 42.857 13.24 0.00 0.00 2.85
3393 4666 3.331478 TTTTATCCTGACGGCGGTAAA 57.669 42.857 13.24 4.06 0.00 2.01
3394 4667 3.331478 TTTATCCTGACGGCGGTAAAA 57.669 42.857 13.24 0.00 0.00 1.52
3395 4668 3.331478 TTATCCTGACGGCGGTAAAAA 57.669 42.857 13.24 0.00 0.00 1.94
3397 4670 3.547054 ATCCTGACGGCGGTAAAAATA 57.453 42.857 13.24 0.00 0.00 1.40
3399 4672 3.876341 TCCTGACGGCGGTAAAAATATT 58.124 40.909 13.24 0.00 0.00 1.28
3542 4816 0.817634 TTGTGAACTGGTTCGCCCTG 60.818 55.000 19.82 0.00 46.39 4.45
3923 5212 1.644786 GCAACGCTGACCCGCTTTAT 61.645 55.000 0.00 0.00 0.00 1.40
3974 5281 2.214920 GGACCTGTTCCCGGTGTCT 61.215 63.158 0.00 0.00 38.70 3.41
3992 5299 3.003763 GAGCCCGGAGTGGAGGTT 61.004 66.667 0.73 0.00 42.00 3.50
4079 5410 1.028868 ACTACTACGTGGTCGGGAGC 61.029 60.000 8.22 0.00 41.85 4.70
4281 5630 3.345808 CCGGTGTTCAGGTGCGTG 61.346 66.667 0.00 0.00 0.00 5.34
4319 5668 7.061673 GCGCACACAAGTTCATCAATATTTTTA 59.938 33.333 0.30 0.00 0.00 1.52
4325 5676 9.702726 ACAAGTTCATCAATATTTTTACGATCG 57.297 29.630 14.88 14.88 0.00 3.69
5049 6436 1.122632 TGAACGGGAACAGCCACCTA 61.123 55.000 0.00 0.00 38.95 3.08
5052 6439 1.802553 ACGGGAACAGCCACCTATAT 58.197 50.000 0.00 0.00 38.95 0.86
5215 6602 1.376812 GGGTTTTCGCTCGGTGGAT 60.377 57.895 0.00 0.00 0.00 3.41
5328 6719 1.315981 TTGTTTGCCGGAACAGCACA 61.316 50.000 5.05 0.00 40.69 4.57
5357 7342 2.425143 TTCTAGGATGCTGCAAAGGG 57.575 50.000 6.36 0.00 0.00 3.95
5368 7356 3.642848 TGCTGCAAAGGGAAAAGATTCTT 59.357 39.130 0.00 0.00 35.79 2.52
5583 8381 2.238942 ATGAAATCGATGTGCGCCTA 57.761 45.000 4.18 0.00 40.61 3.93
5621 8420 3.700109 CTCCGAGACTTGGAGCCA 58.300 61.111 23.33 0.00 45.99 4.75
5633 8432 2.734755 TGGAGCCAGGTTCCATTATG 57.265 50.000 20.94 0.00 37.99 1.90
5651 8450 3.630892 ATGATCCATAGCAGAGCATCC 57.369 47.619 0.00 0.00 35.53 3.51
5652 8451 2.617658 TGATCCATAGCAGAGCATCCT 58.382 47.619 0.00 0.00 33.66 3.24
5653 8452 2.566279 TGATCCATAGCAGAGCATCCTC 59.434 50.000 0.00 0.00 38.42 3.71
5654 8453 1.346062 TCCATAGCAGAGCATCCTCC 58.654 55.000 0.00 0.00 38.96 4.30
5655 8454 1.054231 CCATAGCAGAGCATCCTCCA 58.946 55.000 0.00 0.00 38.96 3.86
5656 8455 1.419012 CCATAGCAGAGCATCCTCCAA 59.581 52.381 0.00 0.00 38.96 3.53
5727 8526 8.716646 AAAGAACGGATTGTTTCTTCATTTTT 57.283 26.923 0.00 0.00 42.09 1.94
5752 8551 6.788509 TTGGTTTATGATGGGACCCATATA 57.211 37.500 26.61 18.09 45.26 0.86
5753 8552 6.788509 TGGTTTATGATGGGACCCATATAA 57.211 37.500 26.61 22.63 45.26 0.98
5763 8562 6.008696 TGGGACCCATATAATTTTTCGTCT 57.991 37.500 9.95 0.00 0.00 4.18
5770 8569 7.067008 ACCCATATAATTTTTCGTCTGTCTTGG 59.933 37.037 0.00 0.00 0.00 3.61
5785 8584 3.195661 GTCTTGGAATAACGATTCGGCT 58.804 45.455 11.29 0.00 42.20 5.52
5787 8586 4.807304 GTCTTGGAATAACGATTCGGCTTA 59.193 41.667 11.29 1.45 42.20 3.09
5875 8674 0.179121 TAGCGCTTATGTGGGACGTG 60.179 55.000 18.68 0.00 0.00 4.49
5882 8681 3.408634 CTTATGTGGGACGTGGAACTTT 58.591 45.455 0.00 0.00 31.75 2.66
5967 8766 3.746940 TCGGGCTGCCCTTTATTTATAC 58.253 45.455 33.39 4.65 42.67 1.47
5977 8776 8.789825 TGCCCTTTATTTATACGTTAACTTGA 57.210 30.769 3.71 0.00 0.00 3.02
5994 8793 4.394729 ACTTGACGAGGGAAATAAAGCAA 58.605 39.130 0.00 0.00 0.00 3.91
5997 8796 3.010420 GACGAGGGAAATAAAGCAAGCT 58.990 45.455 0.00 0.00 0.00 3.74
6007 8806 0.390492 AAAGCAAGCTCAAGCCAACC 59.610 50.000 0.00 0.00 43.38 3.77
6060 8859 2.435805 GAGATGGTCATGCCTAACTCCA 59.564 50.000 7.54 0.00 38.35 3.86
6067 8866 3.382546 GTCATGCCTAACTCCAATGCAAT 59.617 43.478 0.00 0.00 35.30 3.56
6095 8894 3.448660 GCAGTCCAGGCCTTTTAATGAAT 59.551 43.478 0.00 0.00 0.00 2.57
6097 8896 5.127031 GCAGTCCAGGCCTTTTAATGAATAA 59.873 40.000 0.00 0.00 0.00 1.40
6098 8897 6.681368 GCAGTCCAGGCCTTTTAATGAATAAG 60.681 42.308 0.00 0.00 0.00 1.73
6152 8951 0.037590 AACAAATACTGGGAGCGCCA 59.962 50.000 9.31 0.00 35.15 5.69
6157 8956 2.965716 ATACTGGGAGCGCCATTGGC 62.966 60.000 18.10 18.10 46.75 4.52
6260 9199 6.894682 TGTACATTGAATTGGACTATAGCCA 58.105 36.000 10.69 10.69 31.30 4.75
6369 9330 3.689649 ACAATTCTACAAAGATGGTCGGC 59.310 43.478 0.00 0.00 0.00 5.54
6379 9479 1.561542 AGATGGTCGGCTTGGAAGAAT 59.438 47.619 0.00 0.00 0.00 2.40
6459 10785 6.058183 GCCATAGTGATAGAATTTGGAGTGT 58.942 40.000 0.00 0.00 0.00 3.55
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 1.339631 TGCCTTCTTATCCAACACGGG 60.340 52.381 0.00 0.00 34.36 5.28
73 74 4.269123 GCAAAACCCTTTGTTAACCGAAAG 59.731 41.667 2.48 7.23 43.34 2.62
88 89 3.961480 ATTAAGGCTGAAGCAAAACCC 57.039 42.857 4.43 0.00 44.36 4.11
91 92 8.588290 TTCCTATTATTAAGGCTGAAGCAAAA 57.412 30.769 4.43 0.00 44.36 2.44
92 93 7.285401 CCTTCCTATTATTAAGGCTGAAGCAAA 59.715 37.037 4.43 0.00 44.36 3.68
93 94 6.772716 CCTTCCTATTATTAAGGCTGAAGCAA 59.227 38.462 4.43 0.00 44.36 3.91
94 95 6.299141 CCTTCCTATTATTAAGGCTGAAGCA 58.701 40.000 4.43 0.00 44.36 3.91
95 96 6.809630 CCTTCCTATTATTAAGGCTGAAGC 57.190 41.667 0.00 0.00 41.14 3.86
102 103 5.607477 TGTGACGCCTTCCTATTATTAAGG 58.393 41.667 0.00 0.00 42.27 2.69
103 104 6.089551 CGATGTGACGCCTTCCTATTATTAAG 59.910 42.308 0.00 0.00 0.00 1.85
107 108 3.914312 CGATGTGACGCCTTCCTATTAT 58.086 45.455 0.00 0.00 0.00 1.28
110 111 3.967886 CGATGTGACGCCTTCCTAT 57.032 52.632 0.00 0.00 0.00 2.57
129 130 3.585990 CCATTTGCCGCCGCTAGG 61.586 66.667 0.00 0.00 41.62 3.02
130 131 1.845809 GATCCATTTGCCGCCGCTAG 61.846 60.000 0.00 0.00 35.36 3.42
192 199 1.766496 TCTTTTCGTGGAAGGTCACCT 59.234 47.619 0.00 0.00 34.36 4.00
196 203 0.790814 CGCTCTTTTCGTGGAAGGTC 59.209 55.000 0.00 0.00 0.00 3.85
197 204 0.391597 TCGCTCTTTTCGTGGAAGGT 59.608 50.000 0.00 0.00 0.00 3.50
204 211 1.372623 GGTCGGTCGCTCTTTTCGT 60.373 57.895 0.00 0.00 0.00 3.85
205 212 1.372499 TGGTCGGTCGCTCTTTTCG 60.372 57.895 0.00 0.00 0.00 3.46
213 220 3.343421 GTGGTTGTGGTCGGTCGC 61.343 66.667 0.00 0.00 0.00 5.19
214 221 2.663852 GGTGGTTGTGGTCGGTCG 60.664 66.667 0.00 0.00 0.00 4.79
224 231 5.337578 TTCTTTTTCTTCTTGGGTGGTTG 57.662 39.130 0.00 0.00 0.00 3.77
235 242 7.761038 TCCATCTAGGGTTTTCTTTTTCTTC 57.239 36.000 0.00 0.00 38.24 2.87
237 244 6.209589 GCTTCCATCTAGGGTTTTCTTTTTCT 59.790 38.462 0.00 0.00 38.24 2.52
253 260 2.544721 TCAGAGACTTGGCTTCCATCT 58.455 47.619 0.00 0.00 31.53 2.90
254 261 3.340814 TTCAGAGACTTGGCTTCCATC 57.659 47.619 0.00 0.00 31.53 3.51
255 262 3.795688 TTTCAGAGACTTGGCTTCCAT 57.204 42.857 0.00 0.00 31.53 3.41
256 263 3.214328 GTTTTCAGAGACTTGGCTTCCA 58.786 45.455 0.00 0.00 0.00 3.53
257 264 3.214328 TGTTTTCAGAGACTTGGCTTCC 58.786 45.455 0.00 0.00 0.00 3.46
258 265 4.276926 ACATGTTTTCAGAGACTTGGCTTC 59.723 41.667 0.00 0.00 0.00 3.86
259 266 4.037208 CACATGTTTTCAGAGACTTGGCTT 59.963 41.667 0.00 0.00 0.00 4.35
260 267 3.567164 CACATGTTTTCAGAGACTTGGCT 59.433 43.478 0.00 0.00 0.00 4.75
261 268 3.316308 ACACATGTTTTCAGAGACTTGGC 59.684 43.478 0.00 0.00 0.00 4.52
262 269 5.760253 AGTACACATGTTTTCAGAGACTTGG 59.240 40.000 0.00 0.00 0.00 3.61
263 270 6.851222 AGTACACATGTTTTCAGAGACTTG 57.149 37.500 0.00 0.00 0.00 3.16
264 271 9.561069 AATTAGTACACATGTTTTCAGAGACTT 57.439 29.630 0.00 0.00 0.00 3.01
265 272 9.561069 AAATTAGTACACATGTTTTCAGAGACT 57.439 29.630 0.00 0.00 0.00 3.24
275 282 9.030301 GCACAAAAGAAAATTAGTACACATGTT 57.970 29.630 0.00 0.00 0.00 2.71
276 283 8.413229 AGCACAAAAGAAAATTAGTACACATGT 58.587 29.630 0.00 0.00 0.00 3.21
277 284 8.693504 CAGCACAAAAGAAAATTAGTACACATG 58.306 33.333 0.00 0.00 0.00 3.21
278 285 8.629158 TCAGCACAAAAGAAAATTAGTACACAT 58.371 29.630 0.00 0.00 0.00 3.21
279 286 7.990917 TCAGCACAAAAGAAAATTAGTACACA 58.009 30.769 0.00 0.00 0.00 3.72
280 287 8.850454 TTCAGCACAAAAGAAAATTAGTACAC 57.150 30.769 0.00 0.00 0.00 2.90
281 288 9.862371 TTTTCAGCACAAAAGAAAATTAGTACA 57.138 25.926 0.00 0.00 36.61 2.90
307 314 4.158949 GCATGGTACGGGGAAAGTATTTTT 59.841 41.667 0.00 0.00 39.27 1.94
308 315 3.697542 GCATGGTACGGGGAAAGTATTTT 59.302 43.478 0.00 0.00 39.27 1.82
309 316 3.053917 AGCATGGTACGGGGAAAGTATTT 60.054 43.478 0.00 0.00 43.98 1.40
310 317 2.508300 AGCATGGTACGGGGAAAGTATT 59.492 45.455 0.00 0.00 0.00 1.89
311 318 2.124411 AGCATGGTACGGGGAAAGTAT 58.876 47.619 0.00 0.00 0.00 2.12
312 319 1.575419 AGCATGGTACGGGGAAAGTA 58.425 50.000 0.00 0.00 0.00 2.24
313 320 1.575419 TAGCATGGTACGGGGAAAGT 58.425 50.000 0.00 0.00 0.00 2.66
314 321 2.930826 ATAGCATGGTACGGGGAAAG 57.069 50.000 6.80 0.00 0.00 2.62
315 322 3.968649 TCTTATAGCATGGTACGGGGAAA 59.031 43.478 6.80 0.00 0.00 3.13
316 323 3.576982 CTCTTATAGCATGGTACGGGGAA 59.423 47.826 6.80 0.00 0.00 3.97
317 324 3.162666 CTCTTATAGCATGGTACGGGGA 58.837 50.000 6.80 3.16 0.00 4.81
318 325 2.897969 ACTCTTATAGCATGGTACGGGG 59.102 50.000 6.80 3.13 0.00 5.73
319 326 3.321111 ACACTCTTATAGCATGGTACGGG 59.679 47.826 6.80 1.62 0.00 5.28
320 327 4.585955 ACACTCTTATAGCATGGTACGG 57.414 45.455 6.80 0.87 0.00 4.02
321 328 6.903883 AAAACACTCTTATAGCATGGTACG 57.096 37.500 6.80 0.00 0.00 3.67
322 329 8.175716 GTCAAAAACACTCTTATAGCATGGTAC 58.824 37.037 6.80 0.00 0.00 3.34
323 330 7.880713 TGTCAAAAACACTCTTATAGCATGGTA 59.119 33.333 7.15 7.15 31.20 3.25
324 331 6.714810 TGTCAAAAACACTCTTATAGCATGGT 59.285 34.615 1.62 1.62 31.20 3.55
325 332 7.144722 TGTCAAAAACACTCTTATAGCATGG 57.855 36.000 0.00 0.00 31.20 3.66
371 378 9.125255 TCCCTACTACTCTCACTATACCATAAT 57.875 37.037 0.00 0.00 0.00 1.28
372 379 8.515927 TCCCTACTACTCTCACTATACCATAA 57.484 38.462 0.00 0.00 0.00 1.90
373 380 8.515927 TTCCCTACTACTCTCACTATACCATA 57.484 38.462 0.00 0.00 0.00 2.74
374 381 7.403837 TTCCCTACTACTCTCACTATACCAT 57.596 40.000 0.00 0.00 0.00 3.55
375 382 6.836714 TTCCCTACTACTCTCACTATACCA 57.163 41.667 0.00 0.00 0.00 3.25
376 383 7.309316 GCATTTCCCTACTACTCTCACTATACC 60.309 44.444 0.00 0.00 0.00 2.73
377 384 7.230913 TGCATTTCCCTACTACTCTCACTATAC 59.769 40.741 0.00 0.00 0.00 1.47
378 385 7.230913 GTGCATTTCCCTACTACTCTCACTATA 59.769 40.741 0.00 0.00 0.00 1.31
379 386 6.041069 GTGCATTTCCCTACTACTCTCACTAT 59.959 42.308 0.00 0.00 0.00 2.12
380 387 5.360144 GTGCATTTCCCTACTACTCTCACTA 59.640 44.000 0.00 0.00 0.00 2.74
381 388 4.160626 GTGCATTTCCCTACTACTCTCACT 59.839 45.833 0.00 0.00 0.00 3.41
382 389 4.081642 TGTGCATTTCCCTACTACTCTCAC 60.082 45.833 0.00 0.00 0.00 3.51
383 390 4.093743 TGTGCATTTCCCTACTACTCTCA 58.906 43.478 0.00 0.00 0.00 3.27
384 391 4.737855 TGTGCATTTCCCTACTACTCTC 57.262 45.455 0.00 0.00 0.00 3.20
385 392 5.426833 AGAATGTGCATTTCCCTACTACTCT 59.573 40.000 8.30 0.00 0.00 3.24
386 393 5.675538 AGAATGTGCATTTCCCTACTACTC 58.324 41.667 8.30 0.00 0.00 2.59
387 394 5.700402 AGAATGTGCATTTCCCTACTACT 57.300 39.130 8.30 0.00 0.00 2.57
388 395 5.880332 TGAAGAATGTGCATTTCCCTACTAC 59.120 40.000 8.30 0.00 0.00 2.73
389 396 6.061022 TGAAGAATGTGCATTTCCCTACTA 57.939 37.500 8.30 0.00 0.00 1.82
390 397 4.922206 TGAAGAATGTGCATTTCCCTACT 58.078 39.130 8.30 0.00 0.00 2.57
391 398 5.585390 CATGAAGAATGTGCATTTCCCTAC 58.415 41.667 8.30 0.00 0.00 3.18
392 399 5.840243 CATGAAGAATGTGCATTTCCCTA 57.160 39.130 8.30 0.00 0.00 3.53
393 400 4.730949 CATGAAGAATGTGCATTTCCCT 57.269 40.909 8.30 0.00 0.00 4.20
409 416 8.601845 TTCGAATTAGTTTCTCTTCACATGAA 57.398 30.769 0.00 0.00 31.73 2.57
410 417 7.148573 GCTTCGAATTAGTTTCTCTTCACATGA 60.149 37.037 0.00 0.00 31.73 3.07
411 418 6.958193 GCTTCGAATTAGTTTCTCTTCACATG 59.042 38.462 0.00 0.00 31.73 3.21
412 419 6.092807 GGCTTCGAATTAGTTTCTCTTCACAT 59.907 38.462 0.00 0.00 31.73 3.21
413 420 5.408604 GGCTTCGAATTAGTTTCTCTTCACA 59.591 40.000 0.00 0.00 31.73 3.58
414 421 5.408604 TGGCTTCGAATTAGTTTCTCTTCAC 59.591 40.000 0.00 0.00 31.73 3.18
415 422 5.547465 TGGCTTCGAATTAGTTTCTCTTCA 58.453 37.500 0.00 0.00 31.73 3.02
416 423 6.147985 ACTTGGCTTCGAATTAGTTTCTCTTC 59.852 38.462 0.00 0.00 31.73 2.87
417 424 5.998363 ACTTGGCTTCGAATTAGTTTCTCTT 59.002 36.000 0.00 0.00 31.73 2.85
418 425 5.552178 ACTTGGCTTCGAATTAGTTTCTCT 58.448 37.500 0.00 0.00 31.73 3.10
419 426 5.639931 AGACTTGGCTTCGAATTAGTTTCTC 59.360 40.000 0.00 0.00 31.73 2.87
420 427 5.552178 AGACTTGGCTTCGAATTAGTTTCT 58.448 37.500 0.00 0.00 31.73 2.52
421 428 5.444745 CGAGACTTGGCTTCGAATTAGTTTC 60.445 44.000 0.00 4.33 0.00 2.78
422 429 4.389077 CGAGACTTGGCTTCGAATTAGTTT 59.611 41.667 0.00 0.00 0.00 2.66
423 430 3.927142 CGAGACTTGGCTTCGAATTAGTT 59.073 43.478 0.00 0.00 0.00 2.24
424 431 3.512680 CGAGACTTGGCTTCGAATTAGT 58.487 45.455 0.00 0.00 0.00 2.24
425 432 2.282820 GCGAGACTTGGCTTCGAATTAG 59.717 50.000 0.00 0.00 0.00 1.73
429 436 0.249699 TTGCGAGACTTGGCTTCGAA 60.250 50.000 0.00 0.00 0.00 3.71
445 452 7.460637 CGTTAGTACTAGTATGACGTGTTTTGC 60.461 40.741 19.16 0.76 0.00 3.68
446 453 7.007725 CCGTTAGTACTAGTATGACGTGTTTTG 59.992 40.741 22.59 10.88 0.00 2.44
453 463 3.363378 CCGCCGTTAGTACTAGTATGACG 60.363 52.174 19.91 19.91 0.00 4.35
473 483 2.636227 CGTAATACTCTGCGCGCCG 61.636 63.158 30.77 23.86 0.00 6.46
474 484 2.300787 CCGTAATACTCTGCGCGCC 61.301 63.158 30.77 11.42 0.00 6.53
475 485 2.300787 CCCGTAATACTCTGCGCGC 61.301 63.158 27.26 27.26 0.00 6.86
496 846 4.527583 GCCTGCTCTGCTCTCCGG 62.528 72.222 0.00 0.00 0.00 5.14
547 897 4.530857 GACTCCGGCCGTCCATGG 62.531 72.222 26.12 4.97 0.00 3.66
589 939 3.178540 AAACGCGAGAGGCCACCTT 62.179 57.895 15.93 0.00 38.94 3.50
591 941 3.423154 CAAACGCGAGAGGCCACC 61.423 66.667 15.93 0.00 38.94 4.61
612 963 3.829026 GTGGCCATCTTTTCTTCCTCTTT 59.171 43.478 9.72 0.00 0.00 2.52
616 967 1.428912 TGGTGGCCATCTTTTCTTCCT 59.571 47.619 18.94 0.00 0.00 3.36
623 974 2.307496 TCATGTTGGTGGCCATCTTT 57.693 45.000 18.94 0.00 31.53 2.52
626 977 3.290710 AGTAATCATGTTGGTGGCCATC 58.709 45.455 9.72 9.78 31.53 3.51
632 983 5.043903 CGGACTAGAGTAATCATGTTGGTG 58.956 45.833 0.00 0.00 0.00 4.17
635 991 4.341235 TCCCGGACTAGAGTAATCATGTTG 59.659 45.833 0.73 0.00 0.00 3.33
646 1002 0.178995 GGTAGGGTCCCGGACTAGAG 60.179 65.000 17.27 0.00 32.47 2.43
648 1004 1.527844 CGGTAGGGTCCCGGACTAG 60.528 68.421 17.27 6.74 41.78 2.57
649 1005 2.597340 CGGTAGGGTCCCGGACTA 59.403 66.667 17.27 0.00 41.78 2.59
657 1013 4.603946 GCATCGGCCGGTAGGGTC 62.604 72.222 27.83 1.37 38.44 4.46
659 1015 2.107041 TAATGCATCGGCCGGTAGGG 62.107 60.000 27.83 7.74 40.13 3.53
660 1016 0.250124 TTAATGCATCGGCCGGTAGG 60.250 55.000 27.83 10.13 40.13 3.18
661 1017 1.732259 GATTAATGCATCGGCCGGTAG 59.268 52.381 27.83 16.46 40.13 3.18
662 1018 1.346395 AGATTAATGCATCGGCCGGTA 59.654 47.619 27.83 10.37 40.13 4.02
663 1019 0.108585 AGATTAATGCATCGGCCGGT 59.891 50.000 27.83 18.03 40.13 5.28
665 1021 1.511850 TCAGATTAATGCATCGGCCG 58.488 50.000 22.12 22.12 40.13 6.13
667 1023 3.425892 GCAGATCAGATTAATGCATCGGC 60.426 47.826 0.00 0.43 36.88 5.54
668 1024 3.126514 GGCAGATCAGATTAATGCATCGG 59.873 47.826 0.00 0.00 38.63 4.18
669 1025 3.749609 TGGCAGATCAGATTAATGCATCG 59.250 43.478 0.00 0.00 38.63 3.84
671 1027 3.501062 CGTGGCAGATCAGATTAATGCAT 59.499 43.478 14.64 0.00 38.63 3.96
672 1028 2.874086 CGTGGCAGATCAGATTAATGCA 59.126 45.455 14.64 0.00 38.63 3.96
673 1029 2.874701 ACGTGGCAGATCAGATTAATGC 59.125 45.455 0.00 7.38 36.16 3.56
674 1030 3.183172 CGACGTGGCAGATCAGATTAATG 59.817 47.826 0.00 0.00 0.00 1.90
675 1031 3.384668 CGACGTGGCAGATCAGATTAAT 58.615 45.455 0.00 0.00 0.00 1.40
676 1032 2.481276 CCGACGTGGCAGATCAGATTAA 60.481 50.000 0.00 0.00 0.00 1.40
677 1033 1.067060 CCGACGTGGCAGATCAGATTA 59.933 52.381 0.00 0.00 0.00 1.75
678 1034 0.179100 CCGACGTGGCAGATCAGATT 60.179 55.000 0.00 0.00 0.00 2.40
679 1035 1.439228 CCGACGTGGCAGATCAGAT 59.561 57.895 0.00 0.00 0.00 2.90
680 1036 2.885113 CCGACGTGGCAGATCAGA 59.115 61.111 0.00 0.00 0.00 3.27
701 1057 3.265995 GTCCTTCCTTCTTATCCACCCAA 59.734 47.826 0.00 0.00 0.00 4.12
703 1059 2.158943 CGTCCTTCCTTCTTATCCACCC 60.159 54.545 0.00 0.00 0.00 4.61
770 1126 2.819595 CGGGATCAACAGTGGGCG 60.820 66.667 0.00 0.00 0.00 6.13
771 1127 1.745489 GTCGGGATCAACAGTGGGC 60.745 63.158 0.00 0.00 0.00 5.36
772 1128 1.191535 TAGTCGGGATCAACAGTGGG 58.808 55.000 0.00 0.00 0.00 4.61
790 1146 1.612199 GGTCGGCCAGGTGACAAAATA 60.612 52.381 0.00 0.00 36.83 1.40
791 1147 0.893727 GGTCGGCCAGGTGACAAAAT 60.894 55.000 0.00 0.00 36.83 1.82
792 1148 1.527380 GGTCGGCCAGGTGACAAAA 60.527 57.895 0.00 0.00 36.83 2.44
829 1188 2.223479 CCGCCGGTCAATTATTTCCTTG 60.223 50.000 1.90 0.00 0.00 3.61
897 1256 3.815036 GCCCTCCCATCTACTACTACTCC 60.815 56.522 0.00 0.00 0.00 3.85
899 1258 2.110365 GGCCCTCCCATCTACTACTACT 59.890 54.545 0.00 0.00 0.00 2.57
900 1259 2.158355 TGGCCCTCCCATCTACTACTAC 60.158 54.545 0.00 0.00 39.18 2.73
901 1260 2.149556 TGGCCCTCCCATCTACTACTA 58.850 52.381 0.00 0.00 39.18 1.82
902 1261 0.941963 TGGCCCTCCCATCTACTACT 59.058 55.000 0.00 0.00 39.18 2.57
903 1262 1.802553 TTGGCCCTCCCATCTACTAC 58.197 55.000 0.00 0.00 44.89 2.73
904 1263 2.408565 CTTTGGCCCTCCCATCTACTA 58.591 52.381 0.00 0.00 44.89 1.82
905 1264 1.216990 CTTTGGCCCTCCCATCTACT 58.783 55.000 0.00 0.00 44.89 2.57
921 1280 1.531602 GGGCAGGACACTTGGCTTT 60.532 57.895 7.26 0.00 0.00 3.51
960 1319 3.390135 TCCAAATTTATAGCGCTCCGAG 58.610 45.455 16.34 0.00 0.00 4.63
993 1352 1.017387 GAACGAATGAGTGGCATCCC 58.983 55.000 0.00 0.00 35.78 3.85
995 1354 2.476854 GCAAGAACGAATGAGTGGCATC 60.477 50.000 0.00 0.00 35.78 3.91
996 1355 1.470098 GCAAGAACGAATGAGTGGCAT 59.530 47.619 0.00 0.00 39.43 4.40
997 1356 0.874390 GCAAGAACGAATGAGTGGCA 59.126 50.000 0.00 0.00 0.00 4.92
998 1357 0.179215 CGCAAGAACGAATGAGTGGC 60.179 55.000 0.00 0.00 43.02 5.01
999 1358 3.955429 CGCAAGAACGAATGAGTGG 57.045 52.632 0.00 0.00 43.02 4.00
1044 1411 2.423898 GCGAGCCTGGTGGTAGCTA 61.424 63.158 0.00 0.00 36.87 3.32
1056 1423 2.464459 CCGAATGTTCCTGCGAGCC 61.464 63.158 0.00 0.00 0.00 4.70
1057 1424 3.093278 CCGAATGTTCCTGCGAGC 58.907 61.111 0.00 0.00 0.00 5.03
1058 1425 2.464459 GGCCGAATGTTCCTGCGAG 61.464 63.158 0.00 0.00 0.00 5.03
1059 1426 2.435938 GGCCGAATGTTCCTGCGA 60.436 61.111 0.00 0.00 0.00 5.10
1061 1428 1.434696 CATGGCCGAATGTTCCTGC 59.565 57.895 0.00 0.00 0.00 4.85
1062 1429 2.008268 GCCATGGCCGAATGTTCCTG 62.008 60.000 27.24 0.00 34.56 3.86
1198 1569 2.048603 GTCCTGACATGGCCAAGGC 61.049 63.158 10.96 8.79 41.06 4.35
1199 1570 1.379044 GGTCCTGACATGGCCAAGG 60.379 63.158 10.96 12.98 0.00 3.61
1200 1571 0.679002 CTGGTCCTGACATGGCCAAG 60.679 60.000 10.96 8.43 34.56 3.61
1201 1572 1.379916 CTGGTCCTGACATGGCCAA 59.620 57.895 10.96 0.00 34.56 4.52
1202 1573 2.605607 CCTGGTCCTGACATGGCCA 61.606 63.158 8.56 8.56 34.09 5.36
1203 1574 2.273449 CCTGGTCCTGACATGGCC 59.727 66.667 0.00 0.00 0.00 5.36
1204 1575 1.078143 GACCTGGTCCTGACATGGC 60.078 63.158 16.14 0.00 0.00 4.40
1266 1637 1.067283 AGAGAGGCGTCAGTTCATGTG 60.067 52.381 9.41 0.00 0.00 3.21
1268 1639 1.476085 AGAGAGAGGCGTCAGTTCATG 59.524 52.381 9.41 0.00 0.00 3.07
1270 1641 1.169577 GAGAGAGAGGCGTCAGTTCA 58.830 55.000 9.41 0.00 0.00 3.18
1271 1642 0.098025 CGAGAGAGAGGCGTCAGTTC 59.902 60.000 9.41 3.24 0.00 3.01
1273 1644 0.606944 AACGAGAGAGAGGCGTCAGT 60.607 55.000 9.41 0.00 37.26 3.41
1276 1647 0.179158 GGAAACGAGAGAGAGGCGTC 60.179 60.000 0.00 0.00 37.26 5.19
1349 1728 0.177141 GATGGATCCGTCCGAACCAA 59.823 55.000 21.70 0.00 45.71 3.67
1463 1845 1.830477 GGATCTGCTCAGTGAAGGAGT 59.170 52.381 0.00 0.00 36.24 3.85
1507 1889 2.153645 ACGTTCCGGTGTATTTTTCCC 58.846 47.619 0.00 0.00 0.00 3.97
1561 1944 8.586744 ACGGGAATCTATCTACCTAAATTCTTC 58.413 37.037 0.00 0.00 0.00 2.87
1564 1947 7.599245 CACACGGGAATCTATCTACCTAAATTC 59.401 40.741 0.00 0.00 0.00 2.17
1568 1951 5.698104 TCACACGGGAATCTATCTACCTAA 58.302 41.667 0.00 0.00 0.00 2.69
1571 1954 4.341520 AGTTCACACGGGAATCTATCTACC 59.658 45.833 0.00 0.00 0.00 3.18
1572 1955 5.282510 CAGTTCACACGGGAATCTATCTAC 58.717 45.833 0.00 0.00 0.00 2.59
1641 2026 2.338984 GCTCGTCCGGTGTTCACT 59.661 61.111 0.00 0.00 0.00 3.41
1698 2093 3.517100 CAGACTTCAGAATCTCCCCTTCA 59.483 47.826 0.00 0.00 0.00 3.02
1710 2105 3.340928 CCATGCATGTTCAGACTTCAGA 58.659 45.455 24.58 0.00 0.00 3.27
1711 2106 2.159421 GCCATGCATGTTCAGACTTCAG 60.159 50.000 24.58 6.39 0.00 3.02
1712 2107 1.814394 GCCATGCATGTTCAGACTTCA 59.186 47.619 24.58 0.00 0.00 3.02
1713 2108 1.202110 CGCCATGCATGTTCAGACTTC 60.202 52.381 24.58 2.40 0.00 3.01
1714 2109 0.806868 CGCCATGCATGTTCAGACTT 59.193 50.000 24.58 0.00 0.00 3.01
1715 2110 1.028330 CCGCCATGCATGTTCAGACT 61.028 55.000 24.58 0.00 0.00 3.24
1716 2111 1.308069 ACCGCCATGCATGTTCAGAC 61.308 55.000 24.58 6.49 0.00 3.51
1871 2274 6.687081 ACCGAACATCAACAAGAAACTTTA 57.313 33.333 0.00 0.00 0.00 1.85
1872 2275 5.576447 ACCGAACATCAACAAGAAACTTT 57.424 34.783 0.00 0.00 0.00 2.66
1885 2288 0.179081 GTGCCCTCCTACCGAACATC 60.179 60.000 0.00 0.00 0.00 3.06
1886 2289 1.905512 GTGCCCTCCTACCGAACAT 59.094 57.895 0.00 0.00 0.00 2.71
1887 2290 2.642254 CGTGCCCTCCTACCGAACA 61.642 63.158 0.00 0.00 0.00 3.18
1943 2352 1.722034 ACCAAGGCTCAACTCTCTCA 58.278 50.000 0.00 0.00 0.00 3.27
1957 2366 2.227388 GGCTGATGACTGAACAACCAAG 59.773 50.000 0.00 0.00 0.00 3.61
1972 2381 3.003689 CAGAACGTGTTTTTCTGGCTGAT 59.996 43.478 6.34 0.00 44.25 2.90
1985 2394 4.491234 TTGTTTGTTTGACAGAACGTGT 57.509 36.364 0.00 0.00 44.49 4.49
2009 2988 9.940166 CCTAAAACGTCTTACATTTGTTTAGTT 57.060 29.630 0.00 0.00 32.84 2.24
2010 2989 9.112725 ACCTAAAACGTCTTACATTTGTTTAGT 57.887 29.630 0.00 0.00 32.84 2.24
2011 2990 9.590088 GACCTAAAACGTCTTACATTTGTTTAG 57.410 33.333 0.00 0.00 32.84 1.85
2071 3116 1.826054 CCGTGCTTTTGTCCCACCA 60.826 57.895 0.00 0.00 0.00 4.17
2115 3162 8.805688 GTTGATACGTTCTTTCATCTAACTACC 58.194 37.037 0.00 0.00 0.00 3.18
2221 3435 0.033504 TTCCACGCAGAGACTTGGAC 59.966 55.000 0.00 0.00 37.67 4.02
2223 3437 1.813513 AATTCCACGCAGAGACTTGG 58.186 50.000 0.00 0.00 0.00 3.61
2228 3442 2.554142 CAGCATAATTCCACGCAGAGA 58.446 47.619 0.00 0.00 0.00 3.10
2229 3443 1.600957 CCAGCATAATTCCACGCAGAG 59.399 52.381 0.00 0.00 0.00 3.35
2256 3470 0.371301 CATCACTGACGGCGATGTTG 59.629 55.000 16.62 5.39 33.41 3.33
2266 3480 3.251004 GGACAAGTTCAACCATCACTGAC 59.749 47.826 0.00 0.00 0.00 3.51
2305 3519 9.543231 TCTTCTTCCTTTTCCTGTTATCTACTA 57.457 33.333 0.00 0.00 0.00 1.82
2339 3553 3.357079 CACAAGCACCGGCCTGTC 61.357 66.667 0.00 0.00 42.67 3.51
2343 3557 3.660111 GTCACACAAGCACCGGCC 61.660 66.667 0.00 0.00 42.56 6.13
2426 3644 0.606604 ACTTGCCGACGGTAATGACT 59.393 50.000 18.02 0.00 0.00 3.41
2446 3664 6.213397 TCAAGACCAGGAGATAGAAATGACAA 59.787 38.462 0.00 0.00 0.00 3.18
2448 3666 6.045955 GTCAAGACCAGGAGATAGAAATGAC 58.954 44.000 0.00 0.00 0.00 3.06
2481 3703 9.924650 TCTTATCTTACTAGACAACCAAAGTTC 57.075 33.333 0.00 0.00 31.99 3.01
2519 3741 0.678395 TTTTGCCACATCGCCATGTT 59.322 45.000 0.00 0.00 40.66 2.71
2543 3768 8.149647 AGTCAAAATTGCCATGTCTTTTTATCA 58.850 29.630 0.00 0.00 0.00 2.15
2544 3769 8.538409 AGTCAAAATTGCCATGTCTTTTTATC 57.462 30.769 0.00 0.00 0.00 1.75
2545 3770 9.643693 CTAGTCAAAATTGCCATGTCTTTTTAT 57.356 29.630 0.00 0.00 0.00 1.40
2546 3771 8.855110 TCTAGTCAAAATTGCCATGTCTTTTTA 58.145 29.630 0.00 0.00 0.00 1.52
2552 3806 7.359514 GCTTTTTCTAGTCAAAATTGCCATGTC 60.360 37.037 0.00 0.00 0.00 3.06
2576 3830 9.228949 TGGTGCAAAAATCAAATTTATTATGCT 57.771 25.926 18.45 0.00 33.13 3.79
2577 3831 9.493206 CTGGTGCAAAAATCAAATTTATTATGC 57.507 29.630 0.00 15.07 32.84 3.14
2580 3834 9.995003 AGTCTGGTGCAAAAATCAAATTTATTA 57.005 25.926 0.00 0.00 0.00 0.98
2581 3835 8.776470 CAGTCTGGTGCAAAAATCAAATTTATT 58.224 29.630 0.00 0.00 0.00 1.40
2582 3836 7.388500 CCAGTCTGGTGCAAAAATCAAATTTAT 59.612 33.333 11.09 0.00 31.35 1.40
2587 3841 4.057406 CCAGTCTGGTGCAAAAATCAAA 57.943 40.909 11.09 0.00 31.35 2.69
2602 3856 2.302157 CCGGAAAAGGAACTACCAGTCT 59.698 50.000 0.00 0.00 38.49 3.24
2607 3861 1.627329 ACCTCCGGAAAAGGAACTACC 59.373 52.381 14.84 0.00 38.49 3.18
2744 4007 1.081892 CTGTGCATATGGCCTATCGC 58.918 55.000 3.32 2.17 43.89 4.58
2745 4008 2.462456 ACTGTGCATATGGCCTATCG 57.538 50.000 3.32 0.00 43.89 2.92
2746 4009 4.499183 GTCTACTGTGCATATGGCCTATC 58.501 47.826 3.32 0.00 43.89 2.08
2747 4010 3.056536 CGTCTACTGTGCATATGGCCTAT 60.057 47.826 3.32 0.00 43.89 2.57
2748 4011 2.296190 CGTCTACTGTGCATATGGCCTA 59.704 50.000 3.32 0.00 43.89 3.93
2749 4012 1.069204 CGTCTACTGTGCATATGGCCT 59.931 52.381 3.32 0.00 43.89 5.19
2750 4013 1.068588 TCGTCTACTGTGCATATGGCC 59.931 52.381 4.56 0.00 43.89 5.36
2751 4014 2.509052 TCGTCTACTGTGCATATGGC 57.491 50.000 4.56 0.00 45.13 4.40
2845 4112 2.648143 CCACGTTACCCGGGCACTA 61.648 63.158 24.08 1.83 39.18 2.74
2846 4113 4.011517 CCACGTTACCCGGGCACT 62.012 66.667 24.08 3.13 39.18 4.40
2847 4114 3.945304 CTCCACGTTACCCGGGCAC 62.945 68.421 24.08 17.40 39.18 5.01
2848 4115 3.697747 CTCCACGTTACCCGGGCA 61.698 66.667 24.08 4.00 39.18 5.36
2849 4116 1.887344 TAACTCCACGTTACCCGGGC 61.887 60.000 24.08 2.74 39.18 6.13
2850 4117 0.826062 ATAACTCCACGTTACCCGGG 59.174 55.000 22.25 22.25 40.67 5.73
2915 4182 3.194272 GAAACTGGCCGGTGTGTGC 62.194 63.158 20.54 0.00 0.00 4.57
3015 4287 1.003866 GAACACTTGGACGCAACAGAC 60.004 52.381 0.00 0.00 0.00 3.51
3017 4289 1.003545 CTGAACACTTGGACGCAACAG 60.004 52.381 0.00 0.00 0.00 3.16
3019 4291 1.014352 ACTGAACACTTGGACGCAAC 58.986 50.000 0.00 0.00 0.00 4.17
3020 4292 1.745232 AACTGAACACTTGGACGCAA 58.255 45.000 0.00 0.00 0.00 4.85
3021 4293 1.400142 CAAACTGAACACTTGGACGCA 59.600 47.619 0.00 0.00 0.00 5.24
3022 4294 1.400494 ACAAACTGAACACTTGGACGC 59.600 47.619 0.00 0.00 0.00 5.19
3023 4295 2.675844 TCACAAACTGAACACTTGGACG 59.324 45.455 0.00 0.00 0.00 4.79
3087 4360 5.353956 TCAATTTGTCGACATGTTAGGATGG 59.646 40.000 20.80 4.77 0.00 3.51
3096 4369 9.308623 CAAAATTTGATTCAATTTGTCGACATG 57.691 29.630 20.80 15.08 0.00 3.21
3101 4374 7.565848 TGAGCAAAATTTGATTCAATTTGTCG 58.434 30.769 19.25 8.89 30.61 4.35
3138 4411 4.083862 GCCCCGTCACTGGTCCTC 62.084 72.222 0.00 0.00 0.00 3.71
3171 4444 8.689972 AGCAGGTAAATAATTCCAGATTTTCTG 58.310 33.333 0.00 0.00 43.91 3.02
3172 4445 8.689972 CAGCAGGTAAATAATTCCAGATTTTCT 58.310 33.333 0.00 0.00 0.00 2.52
3173 4446 7.436376 GCAGCAGGTAAATAATTCCAGATTTTC 59.564 37.037 0.00 0.00 0.00 2.29
3174 4447 7.124750 AGCAGCAGGTAAATAATTCCAGATTTT 59.875 33.333 0.00 0.00 0.00 1.82
3200 4473 5.813513 AAAAGAAACGGAGGGAGTACTAA 57.186 39.130 0.00 0.00 0.00 2.24
3202 4475 4.701651 AAAAAGAAACGGAGGGAGTACT 57.298 40.909 0.00 0.00 0.00 2.73
3203 4476 5.545588 ACTAAAAAGAAACGGAGGGAGTAC 58.454 41.667 0.00 0.00 0.00 2.73
3205 4478 4.701651 ACTAAAAAGAAACGGAGGGAGT 57.298 40.909 0.00 0.00 0.00 3.85
3206 4479 5.061179 TGAACTAAAAAGAAACGGAGGGAG 58.939 41.667 0.00 0.00 0.00 4.30
3207 4480 5.038651 TGAACTAAAAAGAAACGGAGGGA 57.961 39.130 0.00 0.00 0.00 4.20
3208 4481 5.061179 TCTGAACTAAAAAGAAACGGAGGG 58.939 41.667 0.00 0.00 0.00 4.30
3209 4482 6.803154 ATCTGAACTAAAAAGAAACGGAGG 57.197 37.500 0.00 0.00 0.00 4.30
3239 4512 9.665719 ACTTTACAAAGTTTGAATTTGACCAAT 57.334 25.926 22.23 0.00 46.52 3.16
3255 4528 9.651718 CTACAAAGCTAGTCAAACTTTACAAAG 57.348 33.333 0.13 0.13 41.73 2.77
3256 4529 8.617809 CCTACAAAGCTAGTCAAACTTTACAAA 58.382 33.333 0.00 0.00 32.54 2.83
3257 4530 7.988599 TCCTACAAAGCTAGTCAAACTTTACAA 59.011 33.333 0.00 0.00 32.54 2.41
3258 4531 7.502696 TCCTACAAAGCTAGTCAAACTTTACA 58.497 34.615 0.00 0.00 32.54 2.41
3259 4532 7.958053 TCCTACAAAGCTAGTCAAACTTTAC 57.042 36.000 0.00 0.00 32.54 2.01
3260 4533 8.967664 TTTCCTACAAAGCTAGTCAAACTTTA 57.032 30.769 0.00 0.00 32.54 1.85
3261 4534 7.875327 TTTCCTACAAAGCTAGTCAAACTTT 57.125 32.000 0.00 0.00 34.03 2.66
3262 4535 7.773690 TCTTTTCCTACAAAGCTAGTCAAACTT 59.226 33.333 0.00 0.00 34.26 2.66
3263 4536 7.280356 TCTTTTCCTACAAAGCTAGTCAAACT 58.720 34.615 0.00 0.00 34.26 2.66
3264 4537 7.492352 TCTTTTCCTACAAAGCTAGTCAAAC 57.508 36.000 0.00 0.00 34.26 2.93
3265 4538 9.959721 ATATCTTTTCCTACAAAGCTAGTCAAA 57.040 29.630 0.00 0.00 34.26 2.69
3275 4548 9.997482 GCGAATGTTTATATCTTTTCCTACAAA 57.003 29.630 0.00 0.00 0.00 2.83
3276 4549 8.332464 CGCGAATGTTTATATCTTTTCCTACAA 58.668 33.333 0.00 0.00 0.00 2.41
3277 4550 7.707464 TCGCGAATGTTTATATCTTTTCCTACA 59.293 33.333 6.20 0.00 0.00 2.74
3278 4551 8.068893 TCGCGAATGTTTATATCTTTTCCTAC 57.931 34.615 6.20 0.00 0.00 3.18
3279 4552 8.827177 ATCGCGAATGTTTATATCTTTTCCTA 57.173 30.769 15.24 0.00 0.00 2.94
3280 4553 7.730364 ATCGCGAATGTTTATATCTTTTCCT 57.270 32.000 15.24 0.00 0.00 3.36
3281 4554 9.478019 CATATCGCGAATGTTTATATCTTTTCC 57.522 33.333 15.24 0.00 0.00 3.13
3292 4565 9.515020 AATGTTAATTTCATATCGCGAATGTTT 57.485 25.926 15.24 14.44 0.00 2.83
3323 4596 9.364989 GGAGCTACTATTAGTTCATCATTCATC 57.635 37.037 0.85 0.00 37.30 2.92
3324 4597 8.874156 TGGAGCTACTATTAGTTCATCATTCAT 58.126 33.333 0.85 0.00 37.30 2.57
3325 4598 8.250143 TGGAGCTACTATTAGTTCATCATTCA 57.750 34.615 0.85 0.00 37.30 2.57
3326 4599 8.364142 ACTGGAGCTACTATTAGTTCATCATTC 58.636 37.037 0.85 0.00 37.30 2.67
3327 4600 8.256356 ACTGGAGCTACTATTAGTTCATCATT 57.744 34.615 0.85 0.00 37.30 2.57
3328 4601 7.847711 ACTGGAGCTACTATTAGTTCATCAT 57.152 36.000 0.85 0.00 37.30 2.45
3329 4602 7.561722 AGAACTGGAGCTACTATTAGTTCATCA 59.438 37.037 22.34 0.00 43.79 3.07
3330 4603 7.865385 CAGAACTGGAGCTACTATTAGTTCATC 59.135 40.741 22.34 3.75 43.79 2.92
3331 4604 7.721402 CAGAACTGGAGCTACTATTAGTTCAT 58.279 38.462 22.34 9.83 43.79 2.57
3332 4605 7.101652 CAGAACTGGAGCTACTATTAGTTCA 57.898 40.000 22.34 0.00 43.79 3.18
3378 4651 3.547054 ATATTTTTACCGCCGTCAGGA 57.453 42.857 0.00 0.00 41.02 3.86
3391 4664 5.049267 CCTGCAAAGCACAGCAAATATTTTT 60.049 36.000 0.00 0.00 40.73 1.94
3392 4665 4.453136 CCTGCAAAGCACAGCAAATATTTT 59.547 37.500 0.00 0.00 40.73 1.82
3393 4666 3.998341 CCTGCAAAGCACAGCAAATATTT 59.002 39.130 0.00 0.00 40.73 1.40
3394 4667 3.007182 ACCTGCAAAGCACAGCAAATATT 59.993 39.130 0.00 0.00 40.73 1.28
3395 4668 2.564062 ACCTGCAAAGCACAGCAAATAT 59.436 40.909 0.00 0.00 40.73 1.28
3397 4670 0.754472 ACCTGCAAAGCACAGCAAAT 59.246 45.000 0.00 0.00 40.73 2.32
3399 4672 1.735360 GACCTGCAAAGCACAGCAA 59.265 52.632 0.00 0.00 40.73 3.91
3659 4939 1.802337 CGACGTTCTGGACCTGGTCA 61.802 60.000 26.94 12.90 33.68 4.02
3974 5281 3.846405 AACCTCCACTCCGGGCTCA 62.846 63.158 0.00 0.00 34.36 4.26
4079 5410 3.792047 TCCGCCGTGTCGTCGTAG 61.792 66.667 0.00 0.00 0.00 3.51
4303 5652 7.321271 CAGCCGATCGTAAAAATATTGATGAAC 59.679 37.037 15.09 0.00 0.00 3.18
4325 5676 5.709164 AGCCAATTAATGAGTATGATCAGCC 59.291 40.000 0.09 0.00 31.44 4.85
4986 6373 3.490759 GTGATGCACGTCCTGCCG 61.491 66.667 0.00 0.00 46.51 5.69
5049 6436 2.227865 GGTGCCGTTGTTGAACACATAT 59.772 45.455 0.00 0.00 34.43 1.78
5052 6439 1.803943 GGTGCCGTTGTTGAACACA 59.196 52.632 0.00 0.00 32.89 3.72
5215 6602 2.431454 CCATCCATCCGTCCGTCCA 61.431 63.158 0.00 0.00 0.00 4.02
5328 6719 4.202346 GCAGCATCCTAGAATCCTTCTTCT 60.202 45.833 0.00 0.00 41.14 2.85
5357 7342 8.355913 AGACACAAATCTTCCAAGAATCTTTTC 58.644 33.333 0.00 0.00 38.77 2.29
5368 7356 4.974645 ACACCTAGACACAAATCTTCCA 57.025 40.909 0.00 0.00 0.00 3.53
5583 8381 5.529060 GGAGGCGTATGAGAAAAGATTGAAT 59.471 40.000 0.00 0.00 0.00 2.57
5621 8420 5.549228 TCTGCTATGGATCATAATGGAACCT 59.451 40.000 0.00 0.00 31.48 3.50
5633 8432 2.093553 GGAGGATGCTCTGCTATGGATC 60.094 54.545 14.40 0.00 0.00 3.36
5727 8526 4.133526 TGGGTCCCATCATAAACCAAAA 57.866 40.909 6.47 0.00 33.27 2.44
5739 8538 6.490040 CAGACGAAAAATTATATGGGTCCCAT 59.510 38.462 26.87 26.87 46.99 4.00
5752 8551 7.041644 TCGTTATTCCAAGACAGACGAAAAATT 60.042 33.333 0.00 0.00 35.45 1.82
5753 8552 6.425721 TCGTTATTCCAAGACAGACGAAAAAT 59.574 34.615 0.00 0.00 35.45 1.82
5763 8562 2.933906 GCCGAATCGTTATTCCAAGACA 59.066 45.455 0.82 0.00 38.66 3.41
5770 8569 4.117685 ACTGGTAAGCCGAATCGTTATTC 58.882 43.478 0.82 0.00 38.53 1.75
5785 8584 2.126467 CGGTCGAACGAAAACTGGTAA 58.874 47.619 20.37 0.00 35.47 2.85
5787 8586 0.179103 ACGGTCGAACGAAAACTGGT 60.179 50.000 32.41 0.00 37.61 4.00
5860 8659 1.084289 GTTCCACGTCCCACATAAGC 58.916 55.000 0.00 0.00 0.00 3.09
5864 8663 2.635915 TCTAAAGTTCCACGTCCCACAT 59.364 45.455 0.00 0.00 0.00 3.21
5875 8674 3.366374 GCATGCTTGTGGTCTAAAGTTCC 60.366 47.826 11.37 0.00 0.00 3.62
5882 8681 2.771372 TCCATAGCATGCTTGTGGTCTA 59.229 45.455 33.26 21.22 34.40 2.59
5967 8766 6.470557 TTTATTTCCCTCGTCAAGTTAACG 57.529 37.500 0.00 0.00 41.39 3.18
5977 8776 3.010420 GAGCTTGCTTTATTTCCCTCGT 58.990 45.455 0.00 0.00 0.00 4.18
6007 8806 3.818121 TTGGACGTTGTCTGGGCCG 62.818 63.158 0.00 0.00 32.47 6.13
6060 8859 0.685458 GGACTGCTGGGGATTGCATT 60.685 55.000 0.00 0.00 0.00 3.56
6152 8951 6.293407 CGAGGTAATCATGTTAATTCGCCAAT 60.293 38.462 0.00 0.00 0.00 3.16
6157 8956 9.793245 GTAATTCGAGGTAATCATGTTAATTCG 57.207 33.333 0.00 4.85 0.00 3.34
6226 9119 9.295825 GTCCAATTCAATGTACATAATCCCATA 57.704 33.333 9.21 0.00 0.00 2.74
6260 9199 7.543756 CGTAAACACCAAAATGAGGGATAATT 58.456 34.615 0.00 0.00 0.00 1.40
6379 9479 9.144298 AGATATCCGTAACCTGAAGAAGAATTA 57.856 33.333 0.00 0.00 0.00 1.40
6459 10785 4.338118 GGATAAAAATTCATCGCACTCCCA 59.662 41.667 0.00 0.00 0.00 4.37


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.