Multiple sequence alignment - TraesCS2B01G515600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G515600 chr2B 100.000 4594 0 0 1 4594 710289296 710284703 0.000000e+00 8484.0
1 TraesCS2B01G515600 chr2B 94.949 99 3 2 2429 2525 785216332 785216430 2.210000e-33 154.0
2 TraesCS2B01G515600 chr2B 92.523 107 6 2 2417 2522 78867991 78868096 7.960000e-33 152.0
3 TraesCS2B01G515600 chr2B 93.939 99 5 1 2421 2518 40437945 40438043 1.030000e-31 148.0
4 TraesCS2B01G515600 chr2B 97.297 37 1 0 4472 4508 8325083 8325119 3.840000e-06 63.9
5 TraesCS2B01G515600 chr2D 91.202 2114 89 39 2517 4594 587702713 587700661 0.000000e+00 2784.0
6 TraesCS2B01G515600 chr2D 91.582 1770 97 30 680 2436 587704440 587702710 0.000000e+00 2396.0
7 TraesCS2B01G515600 chr2D 90.640 203 12 6 409 607 587704698 587704499 3.520000e-66 263.0
8 TraesCS2B01G515600 chr2D 88.710 124 5 3 622 741 587704535 587704417 4.790000e-30 143.0
9 TraesCS2B01G515600 chr2A 93.059 1383 58 21 2517 3885 722524569 722523211 0.000000e+00 1988.0
10 TraesCS2B01G515600 chr2A 93.799 1145 53 6 1293 2436 722525693 722524566 0.000000e+00 1705.0
11 TraesCS2B01G515600 chr2A 90.878 592 39 6 736 1321 722526277 722525695 0.000000e+00 780.0
12 TraesCS2B01G515600 chr2A 92.717 508 27 5 4090 4594 722523019 722522519 0.000000e+00 725.0
13 TraesCS2B01G515600 chr2A 93.443 122 8 0 118 239 722527087 722526966 1.020000e-41 182.0
14 TraesCS2B01G515600 chr2A 87.591 137 10 4 273 409 722526970 722526841 7.960000e-33 152.0
15 TraesCS2B01G515600 chr5D 96.809 94 2 1 2430 2523 373835033 373834941 6.150000e-34 156.0
16 TraesCS2B01G515600 chr5D 94.845 97 4 1 2425 2521 430647633 430647538 2.860000e-32 150.0
17 TraesCS2B01G515600 chr6D 94.949 99 3 2 2430 2526 470724264 470724166 2.210000e-33 154.0
18 TraesCS2B01G515600 chr7D 94.845 97 3 2 2422 2518 34334108 34334202 2.860000e-32 150.0
19 TraesCS2B01G515600 chrUn 93.069 101 7 0 2430 2530 43582920 43583020 1.030000e-31 148.0
20 TraesCS2B01G515600 chr4B 93.878 98 5 1 2427 2524 216658738 216658834 3.700000e-31 147.0
21 TraesCS2B01G515600 chr6B 87.931 116 8 5 4460 4572 424292566 424292678 1.040000e-26 132.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G515600 chr2B 710284703 710289296 4593 True 8484.0 8484 100.0000 1 4594 1 chr2B.!!$R1 4593
1 TraesCS2B01G515600 chr2D 587700661 587704698 4037 True 1396.5 2784 90.5335 409 4594 4 chr2D.!!$R1 4185
2 TraesCS2B01G515600 chr2A 722522519 722527087 4568 True 922.0 1988 91.9145 118 4594 6 chr2A.!!$R1 4476

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
387 388 0.325933 ACAGGCTTGCATGTAGCTGA 59.674 50.0 11.25 0.00 45.94 4.26 F
758 1169 0.601558 GGGTGACAGAAGCGTCTACA 59.398 55.0 0.57 3.34 36.82 2.74 F
1954 2407 0.307760 CGGAGTCACAACAAACTGGC 59.692 55.0 0.00 0.00 0.00 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1303 1724 0.530650 ACAGCATGGATACTTCCGCG 60.531 55.0 0.0 0.0 45.89 6.46 R
2500 2954 2.019807 AGTACTCCCTCCGTTCCAAA 57.980 50.0 0.0 0.0 0.00 3.28 R
3624 4084 2.221981 GTCACAGTAGCAGCACAAGAAC 59.778 50.0 0.0 0.0 0.00 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.932146 ACAGTTCATAAACAACCACAAGC 58.068 39.130 0.00 0.00 37.88 4.01
23 24 4.202111 ACAGTTCATAAACAACCACAAGCC 60.202 41.667 0.00 0.00 37.88 4.35
24 25 3.957497 AGTTCATAAACAACCACAAGCCA 59.043 39.130 0.00 0.00 37.88 4.75
25 26 4.588528 AGTTCATAAACAACCACAAGCCAT 59.411 37.500 0.00 0.00 37.88 4.40
26 27 4.517952 TCATAAACAACCACAAGCCATG 57.482 40.909 0.00 0.00 0.00 3.66
27 28 4.148079 TCATAAACAACCACAAGCCATGA 58.852 39.130 0.00 0.00 0.00 3.07
28 29 4.586421 TCATAAACAACCACAAGCCATGAA 59.414 37.500 0.00 0.00 0.00 2.57
29 30 3.902881 AAACAACCACAAGCCATGAAA 57.097 38.095 0.00 0.00 0.00 2.69
30 31 3.902881 AACAACCACAAGCCATGAAAA 57.097 38.095 0.00 0.00 0.00 2.29
31 32 4.420522 AACAACCACAAGCCATGAAAAT 57.579 36.364 0.00 0.00 0.00 1.82
32 33 4.420522 ACAACCACAAGCCATGAAAATT 57.579 36.364 0.00 0.00 0.00 1.82
33 34 4.128643 ACAACCACAAGCCATGAAAATTG 58.871 39.130 0.00 0.00 0.00 2.32
34 35 4.128643 CAACCACAAGCCATGAAAATTGT 58.871 39.130 0.00 0.00 36.34 2.71
35 36 4.420522 ACCACAAGCCATGAAAATTGTT 57.579 36.364 0.00 0.00 33.76 2.83
36 37 4.379652 ACCACAAGCCATGAAAATTGTTC 58.620 39.130 0.00 0.00 33.76 3.18
37 38 4.141756 ACCACAAGCCATGAAAATTGTTCA 60.142 37.500 0.00 0.00 33.76 3.18
38 39 4.815308 CCACAAGCCATGAAAATTGTTCAA 59.185 37.500 0.00 0.00 33.76 2.69
39 40 5.470777 CCACAAGCCATGAAAATTGTTCAAT 59.529 36.000 0.00 0.00 33.76 2.57
40 41 6.367421 CACAAGCCATGAAAATTGTTCAATG 58.633 36.000 0.00 0.00 33.76 2.82
41 42 6.203145 CACAAGCCATGAAAATTGTTCAATGA 59.797 34.615 0.00 0.00 33.76 2.57
42 43 6.938030 ACAAGCCATGAAAATTGTTCAATGAT 59.062 30.769 0.00 0.00 32.10 2.45
43 44 8.095792 ACAAGCCATGAAAATTGTTCAATGATA 58.904 29.630 0.00 0.00 32.10 2.15
44 45 9.104965 CAAGCCATGAAAATTGTTCAATGATAT 57.895 29.630 0.00 0.00 31.55 1.63
45 46 8.882415 AGCCATGAAAATTGTTCAATGATATC 57.118 30.769 0.00 0.00 31.55 1.63
46 47 7.650504 AGCCATGAAAATTGTTCAATGATATCG 59.349 33.333 0.00 0.00 31.55 2.92
47 48 7.568134 GCCATGAAAATTGTTCAATGATATCGC 60.568 37.037 0.00 0.00 31.55 4.58
48 49 7.650504 CCATGAAAATTGTTCAATGATATCGCT 59.349 33.333 0.00 0.00 31.55 4.93
49 50 9.027129 CATGAAAATTGTTCAATGATATCGCTT 57.973 29.630 0.00 0.00 31.55 4.68
50 51 8.619146 TGAAAATTGTTCAATGATATCGCTTC 57.381 30.769 0.00 0.00 0.00 3.86
51 52 8.461222 TGAAAATTGTTCAATGATATCGCTTCT 58.539 29.630 0.00 0.00 0.00 2.85
52 53 9.294030 GAAAATTGTTCAATGATATCGCTTCTT 57.706 29.630 0.00 0.00 0.00 2.52
53 54 8.847444 AAATTGTTCAATGATATCGCTTCTTC 57.153 30.769 0.00 0.00 0.00 2.87
54 55 6.983474 TTGTTCAATGATATCGCTTCTTCA 57.017 33.333 0.00 0.00 0.00 3.02
55 56 7.558161 TTGTTCAATGATATCGCTTCTTCAT 57.442 32.000 0.00 0.00 0.00 2.57
56 57 8.661352 TTGTTCAATGATATCGCTTCTTCATA 57.339 30.769 0.00 0.00 0.00 2.15
57 58 8.661352 TGTTCAATGATATCGCTTCTTCATAA 57.339 30.769 0.00 0.00 0.00 1.90
58 59 9.108284 TGTTCAATGATATCGCTTCTTCATAAA 57.892 29.630 0.00 0.00 0.00 1.40
61 62 8.232513 TCAATGATATCGCTTCTTCATAAATGC 58.767 33.333 0.00 0.00 0.00 3.56
62 63 6.486253 TGATATCGCTTCTTCATAAATGCC 57.514 37.500 0.00 0.00 0.00 4.40
63 64 5.997129 TGATATCGCTTCTTCATAAATGCCA 59.003 36.000 0.00 0.00 0.00 4.92
64 65 6.656270 TGATATCGCTTCTTCATAAATGCCAT 59.344 34.615 0.00 0.00 0.00 4.40
65 66 5.779529 ATCGCTTCTTCATAAATGCCATT 57.220 34.783 0.00 0.00 0.00 3.16
66 67 4.923893 TCGCTTCTTCATAAATGCCATTG 58.076 39.130 0.00 0.00 0.00 2.82
67 68 4.639755 TCGCTTCTTCATAAATGCCATTGA 59.360 37.500 0.00 0.00 0.00 2.57
68 69 4.974275 CGCTTCTTCATAAATGCCATTGAG 59.026 41.667 0.00 0.00 0.00 3.02
69 70 5.287226 GCTTCTTCATAAATGCCATTGAGG 58.713 41.667 0.00 0.00 41.84 3.86
96 97 6.916360 TTTTTGAAGGACTATCAAATGGCT 57.084 33.333 2.88 0.00 43.94 4.75
97 98 6.515272 TTTTGAAGGACTATCAAATGGCTC 57.485 37.500 2.88 0.00 43.94 4.70
98 99 3.797039 TGAAGGACTATCAAATGGCTCG 58.203 45.455 0.00 0.00 0.00 5.03
99 100 3.197766 TGAAGGACTATCAAATGGCTCGT 59.802 43.478 0.00 0.00 0.00 4.18
100 101 3.914426 AGGACTATCAAATGGCTCGTT 57.086 42.857 0.00 0.00 0.00 3.85
101 102 3.535561 AGGACTATCAAATGGCTCGTTG 58.464 45.455 0.00 0.00 0.00 4.10
102 103 3.055094 AGGACTATCAAATGGCTCGTTGT 60.055 43.478 0.00 0.00 0.00 3.32
103 104 3.063997 GGACTATCAAATGGCTCGTTGTG 59.936 47.826 0.00 0.00 0.00 3.33
104 105 3.674997 ACTATCAAATGGCTCGTTGTGT 58.325 40.909 0.00 0.00 0.00 3.72
105 106 4.072131 ACTATCAAATGGCTCGTTGTGTT 58.928 39.130 0.00 0.00 0.00 3.32
106 107 4.518970 ACTATCAAATGGCTCGTTGTGTTT 59.481 37.500 0.00 0.00 0.00 2.83
107 108 3.077229 TCAAATGGCTCGTTGTGTTTG 57.923 42.857 0.00 0.00 0.00 2.93
108 109 2.126467 CAAATGGCTCGTTGTGTTTGG 58.874 47.619 0.00 0.00 0.00 3.28
109 110 0.673437 AATGGCTCGTTGTGTTTGGG 59.327 50.000 0.00 0.00 0.00 4.12
110 111 0.467290 ATGGCTCGTTGTGTTTGGGT 60.467 50.000 0.00 0.00 0.00 4.51
111 112 1.098712 TGGCTCGTTGTGTTTGGGTC 61.099 55.000 0.00 0.00 0.00 4.46
112 113 0.818040 GGCTCGTTGTGTTTGGGTCT 60.818 55.000 0.00 0.00 0.00 3.85
113 114 1.021968 GCTCGTTGTGTTTGGGTCTT 58.978 50.000 0.00 0.00 0.00 3.01
114 115 2.215196 GCTCGTTGTGTTTGGGTCTTA 58.785 47.619 0.00 0.00 0.00 2.10
115 116 2.614983 GCTCGTTGTGTTTGGGTCTTAA 59.385 45.455 0.00 0.00 0.00 1.85
116 117 3.065648 GCTCGTTGTGTTTGGGTCTTAAA 59.934 43.478 0.00 0.00 0.00 1.52
117 118 4.261447 GCTCGTTGTGTTTGGGTCTTAAAT 60.261 41.667 0.00 0.00 0.00 1.40
118 119 5.176407 TCGTTGTGTTTGGGTCTTAAATG 57.824 39.130 0.00 0.00 0.00 2.32
119 120 4.882427 TCGTTGTGTTTGGGTCTTAAATGA 59.118 37.500 0.00 0.00 0.00 2.57
120 121 5.533154 TCGTTGTGTTTGGGTCTTAAATGAT 59.467 36.000 0.00 0.00 0.00 2.45
130 131 4.390264 GGTCTTAAATGATGAGGGGCTAC 58.610 47.826 0.00 0.00 0.00 3.58
140 141 4.320910 GGGGCTACCTGAACTTGC 57.679 61.111 0.00 0.00 36.80 4.01
148 149 3.255642 GCTACCTGAACTTGCCATTTCAA 59.744 43.478 0.00 0.00 31.41 2.69
159 160 8.588290 AACTTGCCATTTCAAACCATACTATA 57.412 30.769 0.00 0.00 0.00 1.31
189 190 4.039603 ACTTTGGCTATTCTGGCTCTTT 57.960 40.909 0.00 0.00 0.00 2.52
204 205 6.317140 TCTGGCTCTTTGATATGTTCAATCAC 59.683 38.462 0.00 0.00 43.73 3.06
222 223 0.892755 ACGATGAACTTGCTCGGGTA 59.107 50.000 0.00 0.00 36.74 3.69
239 240 3.256631 CGGGTACTGGTACTTGTTACACT 59.743 47.826 10.19 0.00 36.36 3.55
240 241 4.458989 CGGGTACTGGTACTTGTTACACTA 59.541 45.833 10.19 0.00 36.36 2.74
241 242 5.619981 CGGGTACTGGTACTTGTTACACTAC 60.620 48.000 10.19 0.00 36.36 2.73
242 243 5.243730 GGGTACTGGTACTTGTTACACTACA 59.756 44.000 10.19 0.00 36.36 2.74
243 244 6.071165 GGGTACTGGTACTTGTTACACTACAT 60.071 42.308 10.19 0.00 36.36 2.29
244 245 6.810182 GGTACTGGTACTTGTTACACTACATG 59.190 42.308 10.19 0.00 36.36 3.21
245 246 5.235516 ACTGGTACTTGTTACACTACATGC 58.764 41.667 0.00 0.00 31.46 4.06
246 247 5.011738 ACTGGTACTTGTTACACTACATGCT 59.988 40.000 0.00 0.00 31.46 3.79
247 248 6.209986 ACTGGTACTTGTTACACTACATGCTA 59.790 38.462 0.00 0.00 31.46 3.49
248 249 7.093465 ACTGGTACTTGTTACACTACATGCTAT 60.093 37.037 0.00 0.00 31.46 2.97
249 250 7.617225 TGGTACTTGTTACACTACATGCTATT 58.383 34.615 0.00 0.00 31.46 1.73
250 251 8.098286 TGGTACTTGTTACACTACATGCTATTT 58.902 33.333 0.00 0.00 31.46 1.40
251 252 8.388103 GGTACTTGTTACACTACATGCTATTTG 58.612 37.037 0.00 0.00 31.46 2.32
252 253 7.377766 ACTTGTTACACTACATGCTATTTGG 57.622 36.000 0.00 0.00 0.00 3.28
253 254 6.940298 ACTTGTTACACTACATGCTATTTGGT 59.060 34.615 0.00 0.00 0.00 3.67
254 255 6.735678 TGTTACACTACATGCTATTTGGTG 57.264 37.500 0.00 0.00 0.00 4.17
255 256 5.645929 TGTTACACTACATGCTATTTGGTGG 59.354 40.000 0.00 0.00 0.00 4.61
256 257 3.620488 ACACTACATGCTATTTGGTGGG 58.380 45.455 0.00 0.00 0.00 4.61
257 258 2.358898 CACTACATGCTATTTGGTGGGC 59.641 50.000 0.00 0.00 0.00 5.36
258 259 2.025416 ACTACATGCTATTTGGTGGGCA 60.025 45.455 0.00 0.00 39.06 5.36
259 260 1.935799 ACATGCTATTTGGTGGGCAA 58.064 45.000 0.00 0.00 38.21 4.52
260 261 1.826720 ACATGCTATTTGGTGGGCAAG 59.173 47.619 0.00 0.00 38.21 4.01
261 262 1.137479 CATGCTATTTGGTGGGCAAGG 59.863 52.381 0.00 0.00 38.21 3.61
262 263 0.407528 TGCTATTTGGTGGGCAAGGA 59.592 50.000 0.00 0.00 0.00 3.36
263 264 1.106285 GCTATTTGGTGGGCAAGGAG 58.894 55.000 0.00 0.00 0.00 3.69
264 265 1.616994 GCTATTTGGTGGGCAAGGAGT 60.617 52.381 0.00 0.00 0.00 3.85
265 266 2.807676 CTATTTGGTGGGCAAGGAGTT 58.192 47.619 0.00 0.00 0.00 3.01
266 267 1.341080 ATTTGGTGGGCAAGGAGTTG 58.659 50.000 0.00 0.00 36.67 3.16
284 285 3.004002 AGTTGCGCAATACATGATGATGG 59.996 43.478 27.79 0.00 33.39 3.51
287 288 2.095567 GCGCAATACATGATGATGGGTC 60.096 50.000 0.30 0.00 33.39 4.46
294 295 1.684983 CATGATGATGGGTCCCAAAGC 59.315 52.381 16.55 10.02 36.95 3.51
346 347 8.352201 ACAAATTTCTTGACGATCTTCAATTGA 58.648 29.630 22.13 3.38 34.96 2.57
350 351 5.541845 TCTTGACGATCTTCAATTGACACT 58.458 37.500 14.35 0.00 34.96 3.55
355 356 4.153986 CGATCTTCAATTGACACTTGCAC 58.846 43.478 7.89 0.00 0.00 4.57
377 378 3.426525 CGAAAATCTCAAAACAGGCTTGC 59.573 43.478 0.00 0.00 0.00 4.01
378 379 4.370917 GAAAATCTCAAAACAGGCTTGCA 58.629 39.130 0.00 0.00 0.00 4.08
386 387 1.171308 AACAGGCTTGCATGTAGCTG 58.829 50.000 13.21 15.53 45.94 4.24
387 388 0.325933 ACAGGCTTGCATGTAGCTGA 59.674 50.000 11.25 0.00 45.94 4.26
388 389 1.015109 CAGGCTTGCATGTAGCTGAG 58.985 55.000 17.60 0.00 45.94 3.35
389 390 0.907486 AGGCTTGCATGTAGCTGAGA 59.093 50.000 17.60 0.00 45.94 3.27
390 391 1.134461 AGGCTTGCATGTAGCTGAGAG 60.134 52.381 17.60 0.00 45.94 3.20
391 392 0.656785 GCTTGCATGTAGCTGAGAGC 59.343 55.000 12.84 1.60 45.94 4.09
417 418 2.514803 TCCAAAAGGCAGGCTTTCTAC 58.485 47.619 21.52 0.00 0.00 2.59
425 426 3.055021 AGGCAGGCTTTCTACTTTACCTC 60.055 47.826 0.00 0.00 0.00 3.85
441 442 8.396272 ACTTTACCTCATATCATTTGTATGCC 57.604 34.615 0.00 0.00 31.22 4.40
454 455 8.579850 TCATTTGTATGCCTATGAACTTTTCT 57.420 30.769 0.00 0.00 0.00 2.52
489 561 8.177119 TGTATGCCTACAAACTTTGAGATTTT 57.823 30.769 8.55 0.00 34.92 1.82
530 603 6.916360 AACAAAAATATCTTTGCCTCCTCA 57.084 33.333 1.29 0.00 39.46 3.86
590 972 3.525537 CTCAGATTGATGCCGTGTAGTT 58.474 45.455 0.00 0.00 0.00 2.24
591 973 3.935203 CTCAGATTGATGCCGTGTAGTTT 59.065 43.478 0.00 0.00 0.00 2.66
592 974 4.323417 TCAGATTGATGCCGTGTAGTTTT 58.677 39.130 0.00 0.00 0.00 2.43
616 998 1.378762 TTTTTGAGAGGGGCGGAGG 59.621 57.895 0.00 0.00 0.00 4.30
617 999 1.131303 TTTTTGAGAGGGGCGGAGGA 61.131 55.000 0.00 0.00 0.00 3.71
618 1000 1.553690 TTTTGAGAGGGGCGGAGGAG 61.554 60.000 0.00 0.00 0.00 3.69
619 1001 2.455960 TTTGAGAGGGGCGGAGGAGA 62.456 60.000 0.00 0.00 0.00 3.71
620 1002 2.520741 GAGAGGGGCGGAGGAGAG 60.521 72.222 0.00 0.00 0.00 3.20
621 1003 3.024356 AGAGGGGCGGAGGAGAGA 61.024 66.667 0.00 0.00 0.00 3.10
622 1004 2.520741 GAGGGGCGGAGGAGAGAG 60.521 72.222 0.00 0.00 0.00 3.20
623 1005 3.024356 AGGGGCGGAGGAGAGAGA 61.024 66.667 0.00 0.00 0.00 3.10
624 1006 2.200092 GGGGCGGAGGAGAGAGAT 59.800 66.667 0.00 0.00 0.00 2.75
625 1007 1.458588 GGGGCGGAGGAGAGAGATT 60.459 63.158 0.00 0.00 0.00 2.40
626 1008 1.745264 GGGCGGAGGAGAGAGATTG 59.255 63.158 0.00 0.00 0.00 2.67
627 1009 0.757188 GGGCGGAGGAGAGAGATTGA 60.757 60.000 0.00 0.00 0.00 2.57
628 1010 1.337118 GGCGGAGGAGAGAGATTGAT 58.663 55.000 0.00 0.00 0.00 2.57
629 1011 1.000731 GGCGGAGGAGAGAGATTGATG 59.999 57.143 0.00 0.00 0.00 3.07
630 1012 1.605202 GCGGAGGAGAGAGATTGATGC 60.605 57.143 0.00 0.00 0.00 3.91
631 1013 1.000731 CGGAGGAGAGAGATTGATGCC 59.999 57.143 0.00 0.00 0.00 4.40
632 1014 2.045524 GGAGGAGAGAGATTGATGCCA 58.954 52.381 0.00 0.00 0.00 4.92
633 1015 2.638855 GGAGGAGAGAGATTGATGCCAT 59.361 50.000 0.00 0.00 0.00 4.40
634 1016 3.557475 GGAGGAGAGAGATTGATGCCATG 60.557 52.174 0.00 0.00 0.00 3.66
635 1017 3.047115 AGGAGAGAGATTGATGCCATGT 58.953 45.455 0.00 0.00 0.00 3.21
636 1018 4.229639 AGGAGAGAGATTGATGCCATGTA 58.770 43.478 0.00 0.00 0.00 2.29
637 1019 4.283978 AGGAGAGAGATTGATGCCATGTAG 59.716 45.833 0.00 0.00 0.00 2.74
638 1020 4.040217 GGAGAGAGATTGATGCCATGTAGT 59.960 45.833 0.00 0.00 0.00 2.73
639 1021 5.212532 AGAGAGATTGATGCCATGTAGTC 57.787 43.478 0.00 0.00 0.00 2.59
640 1022 3.986572 GAGAGATTGATGCCATGTAGTCG 59.013 47.826 0.00 0.00 0.00 4.18
641 1023 3.638627 AGAGATTGATGCCATGTAGTCGA 59.361 43.478 0.00 0.00 0.00 4.20
703 1086 5.209818 TGAGAAAGTGTAGTCGATTTGGT 57.790 39.130 0.00 0.00 0.00 3.67
733 1144 4.941263 TGTTGTTGTTGAGAAAGTGTAGCT 59.059 37.500 0.00 0.00 0.00 3.32
758 1169 0.601558 GGGTGACAGAAGCGTCTACA 59.398 55.000 0.57 3.34 36.82 2.74
789 1202 1.772063 GAATGCGAATTCCCGTCGGG 61.772 60.000 25.31 25.31 46.11 5.14
806 1219 2.070650 GGGAGTACGGAGCCCCAAT 61.071 63.158 0.00 0.00 38.69 3.16
807 1220 1.446366 GGAGTACGGAGCCCCAATC 59.554 63.158 0.00 0.00 0.00 2.67
1105 1526 3.372554 CTTTCCCGTCTCTCCCCGC 62.373 68.421 0.00 0.00 0.00 6.13
1127 1548 4.156455 CCCCCGCATATGCTTTCTATAT 57.844 45.455 24.56 0.00 39.32 0.86
1159 1580 1.729838 GTCTCGTCCTGTCGTGTGC 60.730 63.158 0.00 0.00 0.00 4.57
1198 1619 3.452786 CCTCGGCGCTCTCAAGGA 61.453 66.667 7.64 0.00 0.00 3.36
1200 1621 1.591059 CTCGGCGCTCTCAAGGATG 60.591 63.158 7.64 0.00 0.00 3.51
1201 1622 2.185350 CGGCGCTCTCAAGGATGT 59.815 61.111 7.64 0.00 0.00 3.06
1212 1633 4.282496 TCTCAAGGATGTCTCTAGGTTCC 58.718 47.826 0.00 0.00 0.00 3.62
1242 1663 4.724602 TGGAGCGAGTGAGCGTGC 62.725 66.667 0.00 0.00 43.00 5.34
1274 1695 7.148950 CGTTCGCACCTGTATAAGATAAGATTC 60.149 40.741 0.00 0.00 0.00 2.52
1276 1697 6.206048 TCGCACCTGTATAAGATAAGATTCGA 59.794 38.462 0.00 0.00 0.00 3.71
1303 1724 4.952262 TCTTGCTTGACAGTATTCATGC 57.048 40.909 4.50 4.50 43.59 4.06
1327 1778 3.181475 CGGAAGTATCCATGCTGTAGTGT 60.181 47.826 0.00 0.00 46.97 3.55
1331 1782 1.485124 ATCCATGCTGTAGTGTCGGA 58.515 50.000 0.00 0.00 0.00 4.55
1339 1790 2.629051 CTGTAGTGTCGGAAAATCCCC 58.371 52.381 0.00 0.00 31.13 4.81
1356 1807 1.607251 CCCCGCGGTAGGTTGATAATC 60.607 57.143 26.12 0.00 0.00 1.75
1360 1811 3.390135 CGCGGTAGGTTGATAATCATGT 58.610 45.455 0.00 0.00 0.00 3.21
1362 1813 3.428870 GCGGTAGGTTGATAATCATGTCG 59.571 47.826 0.00 0.00 0.00 4.35
1363 1814 4.617959 CGGTAGGTTGATAATCATGTCGT 58.382 43.478 0.00 0.00 0.00 4.34
1386 1837 3.170490 ATCGGATGCCCTCTTCGCC 62.170 63.158 0.00 0.00 0.00 5.54
1404 1855 2.662596 CCGGTACAGCTCCTTGCA 59.337 61.111 0.00 0.00 45.94 4.08
1407 1858 1.016130 CGGTACAGCTCCTTGCAGTG 61.016 60.000 0.00 0.00 45.94 3.66
1461 1912 7.144000 GTCTGGTACCGTAATGAAATACCTAG 58.856 42.308 7.57 0.00 36.93 3.02
1482 1935 7.334671 ACCTAGCAAGTACAGAAAAATAGCTTC 59.665 37.037 0.00 0.00 0.00 3.86
1487 1940 7.809806 GCAAGTACAGAAAAATAGCTTCACAAT 59.190 33.333 0.00 0.00 0.00 2.71
1488 1941 9.683069 CAAGTACAGAAAAATAGCTTCACAATT 57.317 29.630 0.00 0.00 0.00 2.32
1543 1996 6.293698 ACGTACTAAAAAGTTGGATCAAGGT 58.706 36.000 0.00 0.00 0.00 3.50
1615 2068 3.873952 TGGGAAACAAATTTGGAAAAGCG 59.126 39.130 21.74 0.00 0.00 4.68
1750 2203 7.634671 ATCATCTTTCAACAATATGCAGTGA 57.365 32.000 0.00 0.00 0.00 3.41
1751 2204 7.080353 TCATCTTTCAACAATATGCAGTGAG 57.920 36.000 0.00 0.00 0.00 3.51
1752 2205 6.656270 TCATCTTTCAACAATATGCAGTGAGT 59.344 34.615 0.00 0.00 0.00 3.41
1758 2211 6.463360 TCAACAATATGCAGTGAGTTGAGTA 58.537 36.000 17.99 3.36 40.01 2.59
1954 2407 0.307760 CGGAGTCACAACAAACTGGC 59.692 55.000 0.00 0.00 0.00 4.85
2096 2549 8.895141 AATACTCCCCTGCTACTTTTATTTTT 57.105 30.769 0.00 0.00 0.00 1.94
2245 2698 4.771577 ACCTCAATCCACATTTGTTGCATA 59.228 37.500 0.00 0.00 0.00 3.14
2286 2740 8.183566 AGATAGGGCCTTCTCTTTCTCTATTAT 58.816 37.037 13.45 0.00 0.00 1.28
2353 2807 5.990120 ATGAAAGCATCCTTTTAAGCACT 57.010 34.783 0.00 0.00 41.22 4.40
2359 2813 6.199937 AGCATCCTTTTAAGCACTTACATG 57.800 37.500 0.00 0.00 0.00 3.21
2417 2871 3.565307 TCTTGGTTGAATCTTGCACCTT 58.435 40.909 0.00 0.00 0.00 3.50
2436 2890 6.351456 GCACCTTCCTGGATTCCTATATACTC 60.351 46.154 3.95 0.00 39.71 2.59
2437 2891 6.155393 CACCTTCCTGGATTCCTATATACTCC 59.845 46.154 3.95 0.00 39.71 3.85
2438 2892 5.663556 CCTTCCTGGATTCCTATATACTCCC 59.336 48.000 3.95 0.00 38.35 4.30
2439 2893 6.500490 TTCCTGGATTCCTATATACTCCCT 57.500 41.667 3.95 0.00 0.00 4.20
2440 2894 6.093617 TCCTGGATTCCTATATACTCCCTC 57.906 45.833 3.95 0.00 0.00 4.30
2441 2895 5.043281 TCCTGGATTCCTATATACTCCCTCC 60.043 48.000 3.95 0.00 0.00 4.30
2442 2896 4.868268 TGGATTCCTATATACTCCCTCCG 58.132 47.826 3.95 0.00 0.00 4.63
2443 2897 4.294168 TGGATTCCTATATACTCCCTCCGT 59.706 45.833 3.95 0.00 0.00 4.69
2444 2898 5.222484 TGGATTCCTATATACTCCCTCCGTT 60.222 44.000 3.95 0.00 0.00 4.44
2445 2899 5.360429 GGATTCCTATATACTCCCTCCGTTC 59.640 48.000 0.00 0.00 0.00 3.95
2446 2900 4.313020 TCCTATATACTCCCTCCGTTCC 57.687 50.000 0.00 0.00 0.00 3.62
2447 2901 3.659195 TCCTATATACTCCCTCCGTTCCA 59.341 47.826 0.00 0.00 0.00 3.53
2448 2902 4.106825 TCCTATATACTCCCTCCGTTCCAA 59.893 45.833 0.00 0.00 0.00 3.53
2449 2903 4.836736 CCTATATACTCCCTCCGTTCCAAA 59.163 45.833 0.00 0.00 0.00 3.28
2450 2904 5.306160 CCTATATACTCCCTCCGTTCCAAAA 59.694 44.000 0.00 0.00 0.00 2.44
2451 2905 5.906772 ATATACTCCCTCCGTTCCAAAAT 57.093 39.130 0.00 0.00 0.00 1.82
2452 2906 7.179694 CCTATATACTCCCTCCGTTCCAAAATA 59.820 40.741 0.00 0.00 0.00 1.40
2453 2907 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
2454 2908 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
2455 2909 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
2456 2910 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
2457 2911 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
2458 2912 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
2459 2913 3.877508 CCTCCGTTCCAAAATAGATGACC 59.122 47.826 0.00 0.00 0.00 4.02
2460 2914 3.877508 CTCCGTTCCAAAATAGATGACCC 59.122 47.826 0.00 0.00 0.00 4.46
2461 2915 3.264706 TCCGTTCCAAAATAGATGACCCA 59.735 43.478 0.00 0.00 0.00 4.51
2462 2916 4.013728 CCGTTCCAAAATAGATGACCCAA 58.986 43.478 0.00 0.00 0.00 4.12
2463 2917 4.142469 CCGTTCCAAAATAGATGACCCAAC 60.142 45.833 0.00 0.00 0.00 3.77
2464 2918 4.700213 CGTTCCAAAATAGATGACCCAACT 59.300 41.667 0.00 0.00 0.00 3.16
2465 2919 5.183140 CGTTCCAAAATAGATGACCCAACTT 59.817 40.000 0.00 0.00 0.00 2.66
2466 2920 6.294508 CGTTCCAAAATAGATGACCCAACTTT 60.295 38.462 0.00 0.00 0.00 2.66
2467 2921 6.588719 TCCAAAATAGATGACCCAACTTTG 57.411 37.500 0.00 0.00 0.00 2.77
2468 2922 6.074648 TCCAAAATAGATGACCCAACTTTGT 58.925 36.000 0.00 0.00 0.00 2.83
2469 2923 7.235079 TCCAAAATAGATGACCCAACTTTGTA 58.765 34.615 0.00 0.00 0.00 2.41
2470 2924 7.175990 TCCAAAATAGATGACCCAACTTTGTAC 59.824 37.037 0.00 0.00 0.00 2.90
2471 2925 7.176690 CCAAAATAGATGACCCAACTTTGTACT 59.823 37.037 0.00 0.00 0.00 2.73
2472 2926 9.226606 CAAAATAGATGACCCAACTTTGTACTA 57.773 33.333 0.00 0.00 0.00 1.82
2473 2927 9.975218 AAAATAGATGACCCAACTTTGTACTAT 57.025 29.630 0.00 0.00 0.00 2.12
2474 2928 9.975218 AAATAGATGACCCAACTTTGTACTATT 57.025 29.630 0.00 0.00 0.00 1.73
2475 2929 8.964476 ATAGATGACCCAACTTTGTACTATTG 57.036 34.615 0.00 0.00 0.00 1.90
2476 2930 6.779860 AGATGACCCAACTTTGTACTATTGT 58.220 36.000 0.00 0.00 0.00 2.71
2477 2931 7.231467 AGATGACCCAACTTTGTACTATTGTT 58.769 34.615 0.00 0.00 0.00 2.83
2478 2932 8.380099 AGATGACCCAACTTTGTACTATTGTTA 58.620 33.333 0.00 0.00 0.00 2.41
2479 2933 7.972832 TGACCCAACTTTGTACTATTGTTAG 57.027 36.000 0.00 0.00 0.00 2.34
2480 2934 7.511268 TGACCCAACTTTGTACTATTGTTAGT 58.489 34.615 0.00 0.00 41.57 2.24
2481 2935 8.649591 TGACCCAACTTTGTACTATTGTTAGTA 58.350 33.333 0.00 0.00 39.42 1.82
2493 2947 7.974482 ACTATTGTTAGTACAAAGTTGGGTC 57.026 36.000 0.00 0.00 46.62 4.46
2494 2948 7.511268 ACTATTGTTAGTACAAAGTTGGGTCA 58.489 34.615 0.00 0.00 46.62 4.02
2495 2949 8.161425 ACTATTGTTAGTACAAAGTTGGGTCAT 58.839 33.333 0.00 0.00 46.62 3.06
2496 2950 6.870971 TTGTTAGTACAAAGTTGGGTCATC 57.129 37.500 0.00 0.00 41.15 2.92
2497 2951 6.182507 TGTTAGTACAAAGTTGGGTCATCT 57.817 37.500 0.00 0.00 0.00 2.90
2498 2952 7.305813 TGTTAGTACAAAGTTGGGTCATCTA 57.694 36.000 0.00 0.00 0.00 1.98
2499 2953 7.913789 TGTTAGTACAAAGTTGGGTCATCTAT 58.086 34.615 0.00 0.00 0.00 1.98
2500 2954 8.380099 TGTTAGTACAAAGTTGGGTCATCTATT 58.620 33.333 0.00 0.00 0.00 1.73
2501 2955 9.227777 GTTAGTACAAAGTTGGGTCATCTATTT 57.772 33.333 0.00 0.00 0.00 1.40
2502 2956 9.802039 TTAGTACAAAGTTGGGTCATCTATTTT 57.198 29.630 0.00 0.00 0.00 1.82
2503 2957 8.110860 AGTACAAAGTTGGGTCATCTATTTTG 57.889 34.615 0.00 0.00 0.00 2.44
2504 2958 6.345096 ACAAAGTTGGGTCATCTATTTTGG 57.655 37.500 0.00 0.00 0.00 3.28
2505 2959 6.074648 ACAAAGTTGGGTCATCTATTTTGGA 58.925 36.000 0.00 0.00 0.00 3.53
2506 2960 6.553100 ACAAAGTTGGGTCATCTATTTTGGAA 59.447 34.615 0.00 0.00 0.00 3.53
2507 2961 6.590234 AAGTTGGGTCATCTATTTTGGAAC 57.410 37.500 0.00 0.00 0.00 3.62
2508 2962 4.700213 AGTTGGGTCATCTATTTTGGAACG 59.300 41.667 0.00 0.00 0.00 3.95
2509 2963 3.616219 TGGGTCATCTATTTTGGAACGG 58.384 45.455 0.00 0.00 0.00 4.44
2510 2964 3.264706 TGGGTCATCTATTTTGGAACGGA 59.735 43.478 0.00 0.00 0.00 4.69
2511 2965 3.877508 GGGTCATCTATTTTGGAACGGAG 59.122 47.826 0.00 0.00 0.00 4.63
2512 2966 3.877508 GGTCATCTATTTTGGAACGGAGG 59.122 47.826 0.00 0.00 0.00 4.30
2513 2967 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
2514 2968 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
2515 2969 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
2516 2970 3.178865 TCTATTTTGGAACGGAGGGAGT 58.821 45.455 0.00 0.00 0.00 3.85
2517 2971 4.355549 TCTATTTTGGAACGGAGGGAGTA 58.644 43.478 0.00 0.00 0.00 2.59
2518 2972 2.845363 TTTTGGAACGGAGGGAGTAC 57.155 50.000 0.00 0.00 0.00 2.73
2519 2973 2.019807 TTTGGAACGGAGGGAGTACT 57.980 50.000 0.00 0.00 0.00 2.73
2520 2974 2.905415 TTGGAACGGAGGGAGTACTA 57.095 50.000 0.00 0.00 0.00 1.82
2551 3005 7.816640 TGTTAGACAGGATTTTATGCAACTTC 58.183 34.615 0.00 0.00 0.00 3.01
2599 3053 2.228545 TTGGGCCATTTGCACTGATA 57.771 45.000 7.26 0.00 46.54 2.15
2639 3093 2.106511 TCTTCTGCCTTTGGTAGCACTT 59.893 45.455 0.00 0.00 35.38 3.16
2672 3126 3.393089 TGAGAACTCTTCTGTCTTGGC 57.607 47.619 3.51 0.00 40.87 4.52
2695 3149 3.669251 ACAGCTCTACAACTGTCCTTC 57.331 47.619 0.00 0.00 43.55 3.46
2696 3150 2.300437 ACAGCTCTACAACTGTCCTTCC 59.700 50.000 0.00 0.00 43.55 3.46
2715 3169 6.781014 TCCTTCCTAACAAGTCTCTAAGTTCA 59.219 38.462 0.00 0.00 0.00 3.18
2723 3177 6.879400 ACAAGTCTCTAAGTTCACTCAGTTT 58.121 36.000 0.00 0.00 0.00 2.66
2732 3186 5.841957 AGTTCACTCAGTTTTCATTGCTT 57.158 34.783 0.00 0.00 0.00 3.91
2733 3187 5.585390 AGTTCACTCAGTTTTCATTGCTTG 58.415 37.500 0.00 0.00 0.00 4.01
2736 3190 5.964758 TCACTCAGTTTTCATTGCTTGTTT 58.035 33.333 0.00 0.00 0.00 2.83
3140 3594 4.020617 CCACCTCCGCCAGCTTCA 62.021 66.667 0.00 0.00 0.00 3.02
3164 3618 1.377333 CCCTCCAGCCGGAAACTTC 60.377 63.158 5.05 0.00 42.21 3.01
3420 3874 4.697756 CGAAGAACCCTGCCGGCA 62.698 66.667 30.59 30.59 33.26 5.69
3598 4058 4.451150 TGCCGCCGTCTGATGACC 62.451 66.667 0.00 0.00 39.94 4.02
3624 4084 4.933064 GCGGTGGATCCTCGCTCG 62.933 72.222 31.27 20.21 45.16 5.03
3655 4115 4.328440 GCTGCTACTGTGACTATTCTGTTG 59.672 45.833 0.00 0.00 0.00 3.33
3864 4339 0.664761 CCAGTTGTGTTGACAGCAGG 59.335 55.000 0.00 0.00 35.83 4.85
3868 4343 0.254462 TTGTGTTGACAGCAGGTGGA 59.746 50.000 4.26 0.00 32.26 4.02
3871 4346 0.320683 TGTTGACAGCAGGTGGATCG 60.321 55.000 4.26 0.00 0.00 3.69
3886 4361 4.433615 GTGGATCGCTGATTTCTCTGTTA 58.566 43.478 0.00 0.00 0.00 2.41
3889 4364 6.701841 GTGGATCGCTGATTTCTCTGTTAATA 59.298 38.462 0.00 0.00 0.00 0.98
3892 4367 7.115663 GGATCGCTGATTTCTCTGTTAATACTC 59.884 40.741 0.00 0.00 0.00 2.59
3925 4400 8.646900 TGTTCTATGATGCTACATAATACACCA 58.353 33.333 5.32 0.00 33.26 4.17
3987 4471 8.792830 TTTTCCAGGTCTATAACTTCTCAATG 57.207 34.615 0.00 0.00 0.00 2.82
4035 4519 7.524717 AAACAGCAAACTCTACCATACAAAT 57.475 32.000 0.00 0.00 0.00 2.32
4037 4521 7.145932 ACAGCAAACTCTACCATACAAATTC 57.854 36.000 0.00 0.00 0.00 2.17
4038 4522 6.714810 ACAGCAAACTCTACCATACAAATTCA 59.285 34.615 0.00 0.00 0.00 2.57
4040 4524 7.912250 CAGCAAACTCTACCATACAAATTCATC 59.088 37.037 0.00 0.00 0.00 2.92
4041 4525 7.611467 AGCAAACTCTACCATACAAATTCATCA 59.389 33.333 0.00 0.00 0.00 3.07
4176 4695 0.832983 TACACGTGGGGCCAGTTACT 60.833 55.000 21.57 0.00 0.00 2.24
4180 4699 0.974010 CGTGGGGCCAGTTACTCCTA 60.974 60.000 4.39 0.00 0.00 2.94
4188 4707 1.815003 CCAGTTACTCCTACGACGGTT 59.185 52.381 0.00 0.00 0.00 4.44
4264 4796 0.028770 CCACGACATCTCGAGCTCTC 59.971 60.000 12.85 0.00 43.06 3.20
4375 4907 4.803426 CTGCCCTCCGTCTGCGTC 62.803 72.222 0.00 0.00 36.15 5.19
4510 5054 3.003173 TCCGCCAAGGAGTCCCTG 61.003 66.667 5.25 2.53 45.98 4.45
4528 5072 3.764466 CTCCTCGCCGTGAGCCTT 61.764 66.667 3.22 0.00 43.82 4.35
4530 5074 4.821589 CCTCGCCGTGAGCCTTCC 62.822 72.222 3.22 0.00 43.82 3.46
4534 5078 4.785453 GCCGTGAGCCTTCCCCTG 62.785 72.222 0.00 0.00 34.35 4.45
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.202111 GGCTTGTGGTTGTTTATGAACTGT 60.202 41.667 1.75 0.00 36.70 3.55
1 2 4.202101 TGGCTTGTGGTTGTTTATGAACTG 60.202 41.667 1.75 0.00 36.70 3.16
3 4 4.314740 TGGCTTGTGGTTGTTTATGAAC 57.685 40.909 0.00 0.00 36.29 3.18
4 5 4.586421 TCATGGCTTGTGGTTGTTTATGAA 59.414 37.500 0.00 0.00 0.00 2.57
5 6 4.148079 TCATGGCTTGTGGTTGTTTATGA 58.852 39.130 0.00 0.00 0.00 2.15
6 7 4.517952 TCATGGCTTGTGGTTGTTTATG 57.482 40.909 0.00 0.00 0.00 1.90
7 8 5.543507 TTTCATGGCTTGTGGTTGTTTAT 57.456 34.783 0.00 0.00 0.00 1.40
8 9 5.344743 TTTTCATGGCTTGTGGTTGTTTA 57.655 34.783 0.00 0.00 0.00 2.01
9 10 3.902881 TTTCATGGCTTGTGGTTGTTT 57.097 38.095 0.00 0.00 0.00 2.83
10 11 3.902881 TTTTCATGGCTTGTGGTTGTT 57.097 38.095 0.00 0.00 0.00 2.83
11 12 4.128643 CAATTTTCATGGCTTGTGGTTGT 58.871 39.130 0.00 0.00 0.00 3.32
12 13 4.128643 ACAATTTTCATGGCTTGTGGTTG 58.871 39.130 0.00 5.11 31.00 3.77
13 14 4.420522 ACAATTTTCATGGCTTGTGGTT 57.579 36.364 0.00 0.00 31.00 3.67
14 15 4.141756 TGAACAATTTTCATGGCTTGTGGT 60.142 37.500 0.00 0.00 32.47 4.16
15 16 4.378774 TGAACAATTTTCATGGCTTGTGG 58.621 39.130 0.00 0.00 32.47 4.17
16 17 5.987777 TTGAACAATTTTCATGGCTTGTG 57.012 34.783 0.00 0.00 32.47 3.33
17 18 6.289834 TCATTGAACAATTTTCATGGCTTGT 58.710 32.000 0.00 0.00 33.45 3.16
18 19 6.788684 TCATTGAACAATTTTCATGGCTTG 57.211 33.333 0.00 0.00 0.00 4.01
19 20 9.321562 GATATCATTGAACAATTTTCATGGCTT 57.678 29.630 0.00 0.00 0.00 4.35
20 21 7.650504 CGATATCATTGAACAATTTTCATGGCT 59.349 33.333 3.12 0.00 0.00 4.75
21 22 7.568134 GCGATATCATTGAACAATTTTCATGGC 60.568 37.037 3.12 0.33 0.00 4.40
22 23 7.650504 AGCGATATCATTGAACAATTTTCATGG 59.349 33.333 3.12 2.02 0.00 3.66
23 24 8.570096 AGCGATATCATTGAACAATTTTCATG 57.430 30.769 3.12 0.00 0.00 3.07
24 25 9.241317 GAAGCGATATCATTGAACAATTTTCAT 57.759 29.630 3.12 0.00 0.00 2.57
25 26 8.461222 AGAAGCGATATCATTGAACAATTTTCA 58.539 29.630 3.12 0.68 0.00 2.69
26 27 8.847444 AGAAGCGATATCATTGAACAATTTTC 57.153 30.769 3.12 0.00 0.00 2.29
27 28 9.294030 GAAGAAGCGATATCATTGAACAATTTT 57.706 29.630 3.12 0.00 0.00 1.82
28 29 8.461222 TGAAGAAGCGATATCATTGAACAATTT 58.539 29.630 3.12 0.00 0.00 1.82
29 30 7.988737 TGAAGAAGCGATATCATTGAACAATT 58.011 30.769 3.12 0.00 0.00 2.32
30 31 7.558161 TGAAGAAGCGATATCATTGAACAAT 57.442 32.000 3.12 0.00 0.00 2.71
31 32 6.983474 TGAAGAAGCGATATCATTGAACAA 57.017 33.333 3.12 0.00 0.00 2.83
32 33 8.661352 TTATGAAGAAGCGATATCATTGAACA 57.339 30.769 3.12 0.00 34.54 3.18
35 36 8.232513 GCATTTATGAAGAAGCGATATCATTGA 58.767 33.333 3.12 0.00 34.54 2.57
36 37 7.484007 GGCATTTATGAAGAAGCGATATCATTG 59.516 37.037 3.12 0.00 34.54 2.82
37 38 7.175467 TGGCATTTATGAAGAAGCGATATCATT 59.825 33.333 3.12 0.00 34.54 2.57
38 39 6.656270 TGGCATTTATGAAGAAGCGATATCAT 59.344 34.615 3.12 0.00 36.54 2.45
39 40 5.997129 TGGCATTTATGAAGAAGCGATATCA 59.003 36.000 3.12 0.00 0.00 2.15
40 41 6.486253 TGGCATTTATGAAGAAGCGATATC 57.514 37.500 0.00 0.00 0.00 1.63
41 42 7.175467 TCAATGGCATTTATGAAGAAGCGATAT 59.825 33.333 10.65 0.00 0.00 1.63
42 43 6.486320 TCAATGGCATTTATGAAGAAGCGATA 59.514 34.615 10.65 0.00 0.00 2.92
43 44 5.300034 TCAATGGCATTTATGAAGAAGCGAT 59.700 36.000 10.65 0.00 0.00 4.58
44 45 4.639755 TCAATGGCATTTATGAAGAAGCGA 59.360 37.500 10.65 0.00 0.00 4.93
45 46 4.923893 TCAATGGCATTTATGAAGAAGCG 58.076 39.130 10.65 0.00 0.00 4.68
46 47 5.287226 CCTCAATGGCATTTATGAAGAAGC 58.713 41.667 10.65 0.00 0.00 3.86
73 74 6.349280 CGAGCCATTTGATAGTCCTTCAAAAA 60.349 38.462 3.28 0.00 43.94 1.94
74 75 5.123820 CGAGCCATTTGATAGTCCTTCAAAA 59.876 40.000 3.28 0.00 43.94 2.44
75 76 4.635765 CGAGCCATTTGATAGTCCTTCAAA 59.364 41.667 1.76 1.76 44.60 2.69
76 77 4.191544 CGAGCCATTTGATAGTCCTTCAA 58.808 43.478 0.00 0.00 0.00 2.69
77 78 3.197766 ACGAGCCATTTGATAGTCCTTCA 59.802 43.478 0.00 0.00 0.00 3.02
78 79 3.798202 ACGAGCCATTTGATAGTCCTTC 58.202 45.455 0.00 0.00 0.00 3.46
79 80 3.914426 ACGAGCCATTTGATAGTCCTT 57.086 42.857 0.00 0.00 0.00 3.36
80 81 3.055094 ACAACGAGCCATTTGATAGTCCT 60.055 43.478 0.00 0.00 0.00 3.85
81 82 3.063997 CACAACGAGCCATTTGATAGTCC 59.936 47.826 0.00 0.00 0.00 3.85
82 83 3.684788 ACACAACGAGCCATTTGATAGTC 59.315 43.478 0.00 0.00 0.00 2.59
83 84 3.674997 ACACAACGAGCCATTTGATAGT 58.325 40.909 0.00 0.00 0.00 2.12
84 85 4.685169 AACACAACGAGCCATTTGATAG 57.315 40.909 0.00 0.00 0.00 2.08
85 86 4.320861 CCAAACACAACGAGCCATTTGATA 60.321 41.667 0.00 0.00 30.35 2.15
86 87 3.552684 CCAAACACAACGAGCCATTTGAT 60.553 43.478 0.00 0.00 30.35 2.57
87 88 2.223688 CCAAACACAACGAGCCATTTGA 60.224 45.455 0.00 0.00 30.35 2.69
88 89 2.126467 CCAAACACAACGAGCCATTTG 58.874 47.619 0.00 0.00 0.00 2.32
89 90 1.068434 CCCAAACACAACGAGCCATTT 59.932 47.619 0.00 0.00 0.00 2.32
90 91 0.673437 CCCAAACACAACGAGCCATT 59.327 50.000 0.00 0.00 0.00 3.16
91 92 0.467290 ACCCAAACACAACGAGCCAT 60.467 50.000 0.00 0.00 0.00 4.40
92 93 1.077357 ACCCAAACACAACGAGCCA 60.077 52.632 0.00 0.00 0.00 4.75
93 94 0.818040 AGACCCAAACACAACGAGCC 60.818 55.000 0.00 0.00 0.00 4.70
94 95 1.021968 AAGACCCAAACACAACGAGC 58.978 50.000 0.00 0.00 0.00 5.03
95 96 4.886247 TTTAAGACCCAAACACAACGAG 57.114 40.909 0.00 0.00 0.00 4.18
96 97 4.882427 TCATTTAAGACCCAAACACAACGA 59.118 37.500 0.00 0.00 0.00 3.85
97 98 5.176407 TCATTTAAGACCCAAACACAACG 57.824 39.130 0.00 0.00 0.00 4.10
98 99 6.744112 TCATCATTTAAGACCCAAACACAAC 58.256 36.000 0.00 0.00 0.00 3.32
99 100 6.015519 CCTCATCATTTAAGACCCAAACACAA 60.016 38.462 0.00 0.00 0.00 3.33
100 101 5.476599 CCTCATCATTTAAGACCCAAACACA 59.523 40.000 0.00 0.00 0.00 3.72
101 102 5.105756 CCCTCATCATTTAAGACCCAAACAC 60.106 44.000 0.00 0.00 0.00 3.32
102 103 5.016173 CCCTCATCATTTAAGACCCAAACA 58.984 41.667 0.00 0.00 0.00 2.83
103 104 4.402474 CCCCTCATCATTTAAGACCCAAAC 59.598 45.833 0.00 0.00 0.00 2.93
104 105 4.609301 CCCCTCATCATTTAAGACCCAAA 58.391 43.478 0.00 0.00 0.00 3.28
105 106 3.627237 GCCCCTCATCATTTAAGACCCAA 60.627 47.826 0.00 0.00 0.00 4.12
106 107 2.091885 GCCCCTCATCATTTAAGACCCA 60.092 50.000 0.00 0.00 0.00 4.51
107 108 2.175715 AGCCCCTCATCATTTAAGACCC 59.824 50.000 0.00 0.00 0.00 4.46
108 109 3.584733 AGCCCCTCATCATTTAAGACC 57.415 47.619 0.00 0.00 0.00 3.85
109 110 4.103311 AGGTAGCCCCTCATCATTTAAGAC 59.897 45.833 0.00 0.00 40.71 3.01
110 111 4.103153 CAGGTAGCCCCTCATCATTTAAGA 59.897 45.833 0.00 0.00 43.86 2.10
111 112 4.103153 TCAGGTAGCCCCTCATCATTTAAG 59.897 45.833 0.00 0.00 43.86 1.85
112 113 4.044308 TCAGGTAGCCCCTCATCATTTAA 58.956 43.478 0.00 0.00 43.86 1.52
113 114 3.664320 TCAGGTAGCCCCTCATCATTTA 58.336 45.455 0.00 0.00 43.86 1.40
114 115 2.492025 TCAGGTAGCCCCTCATCATTT 58.508 47.619 0.00 0.00 43.86 2.32
115 116 2.173569 GTTCAGGTAGCCCCTCATCATT 59.826 50.000 0.00 0.00 43.86 2.57
116 117 1.771255 GTTCAGGTAGCCCCTCATCAT 59.229 52.381 0.00 0.00 43.86 2.45
117 118 1.204146 GTTCAGGTAGCCCCTCATCA 58.796 55.000 0.00 0.00 43.86 3.07
118 119 1.501582 AGTTCAGGTAGCCCCTCATC 58.498 55.000 0.00 0.00 43.86 2.92
119 120 1.561542 CAAGTTCAGGTAGCCCCTCAT 59.438 52.381 0.00 0.00 43.86 2.90
120 121 0.984230 CAAGTTCAGGTAGCCCCTCA 59.016 55.000 0.00 0.00 43.86 3.86
130 131 3.181467 TGGTTTGAAATGGCAAGTTCAGG 60.181 43.478 14.31 0.00 41.08 3.86
140 141 8.394971 TGCATCTATAGTATGGTTTGAAATGG 57.605 34.615 0.00 0.00 0.00 3.16
148 149 9.507329 CCAAAGTATTGCATCTATAGTATGGTT 57.493 33.333 0.00 0.00 35.10 3.67
159 160 5.533903 CCAGAATAGCCAAAGTATTGCATCT 59.466 40.000 0.00 0.00 35.10 2.90
189 190 7.677041 GCAAGTTCATCGTGATTGAACATATCA 60.677 37.037 16.28 0.00 42.93 2.15
204 205 1.135083 AGTACCCGAGCAAGTTCATCG 60.135 52.381 0.00 0.26 36.24 3.84
222 223 5.011738 AGCATGTAGTGTAACAAGTACCAGT 59.988 40.000 0.00 0.00 41.43 4.00
239 240 2.816777 TGCCCACCAAATAGCATGTA 57.183 45.000 0.00 0.00 0.00 2.29
240 241 1.826720 CTTGCCCACCAAATAGCATGT 59.173 47.619 0.00 0.00 34.72 3.21
241 242 1.137479 CCTTGCCCACCAAATAGCATG 59.863 52.381 0.00 0.00 34.72 4.06
242 243 1.006998 TCCTTGCCCACCAAATAGCAT 59.993 47.619 0.00 0.00 34.72 3.79
243 244 0.407528 TCCTTGCCCACCAAATAGCA 59.592 50.000 0.00 0.00 31.94 3.49
244 245 1.106285 CTCCTTGCCCACCAAATAGC 58.894 55.000 0.00 0.00 31.94 2.97
245 246 2.493278 CAACTCCTTGCCCACCAAATAG 59.507 50.000 0.00 0.00 31.94 1.73
246 247 2.524306 CAACTCCTTGCCCACCAAATA 58.476 47.619 0.00 0.00 31.94 1.40
247 248 1.341080 CAACTCCTTGCCCACCAAAT 58.659 50.000 0.00 0.00 31.94 2.32
248 249 1.398958 GCAACTCCTTGCCCACCAAA 61.399 55.000 0.00 0.00 46.27 3.28
249 250 1.832167 GCAACTCCTTGCCCACCAA 60.832 57.895 0.00 0.00 46.27 3.67
250 251 2.203480 GCAACTCCTTGCCCACCA 60.203 61.111 0.00 0.00 46.27 4.17
257 258 2.419673 TCATGTATTGCGCAACTCCTTG 59.580 45.455 27.64 21.25 0.00 3.61
258 259 2.710377 TCATGTATTGCGCAACTCCTT 58.290 42.857 27.64 12.07 0.00 3.36
259 260 2.401583 TCATGTATTGCGCAACTCCT 57.598 45.000 27.64 12.50 0.00 3.69
260 261 2.613595 TCATCATGTATTGCGCAACTCC 59.386 45.455 27.64 16.24 0.00 3.85
261 262 3.950087 TCATCATGTATTGCGCAACTC 57.050 42.857 27.64 20.76 0.00 3.01
262 263 3.004002 CCATCATCATGTATTGCGCAACT 59.996 43.478 27.64 16.77 0.00 3.16
263 264 3.302555 CCATCATCATGTATTGCGCAAC 58.697 45.455 27.64 15.77 0.00 4.17
264 265 2.293955 CCCATCATCATGTATTGCGCAA 59.706 45.455 27.24 27.24 0.00 4.85
265 266 1.881324 CCCATCATCATGTATTGCGCA 59.119 47.619 5.66 5.66 0.00 6.09
266 267 1.881973 ACCCATCATCATGTATTGCGC 59.118 47.619 0.00 0.00 0.00 6.09
267 268 2.485426 GGACCCATCATCATGTATTGCG 59.515 50.000 0.00 0.00 0.00 4.85
268 269 2.821969 GGGACCCATCATCATGTATTGC 59.178 50.000 5.33 0.00 0.00 3.56
269 270 4.103013 TGGGACCCATCATCATGTATTG 57.897 45.455 9.95 0.00 0.00 1.90
270 271 4.812403 TTGGGACCCATCATCATGTATT 57.188 40.909 15.83 0.00 31.53 1.89
271 272 4.733165 CTTTGGGACCCATCATCATGTAT 58.267 43.478 15.83 0.00 31.53 2.29
272 273 3.688126 GCTTTGGGACCCATCATCATGTA 60.688 47.826 15.83 0.00 31.53 2.29
273 274 2.951787 GCTTTGGGACCCATCATCATGT 60.952 50.000 15.83 0.00 31.53 3.21
274 275 1.684983 GCTTTGGGACCCATCATCATG 59.315 52.381 15.83 2.24 31.53 3.07
275 276 1.412074 GGCTTTGGGACCCATCATCAT 60.412 52.381 15.83 0.00 31.53 2.45
276 277 0.033208 GGCTTTGGGACCCATCATCA 60.033 55.000 15.83 0.00 31.53 3.07
294 295 1.813513 ATCTTGACGTGCTCAAAGGG 58.186 50.000 0.00 0.00 38.47 3.95
331 332 4.083855 TGCAAGTGTCAATTGAAGATCGTC 60.084 41.667 16.82 1.20 0.00 4.20
334 335 4.083855 TCGTGCAAGTGTCAATTGAAGATC 60.084 41.667 16.82 0.00 0.00 2.75
346 347 4.630894 TTTGAGATTTTCGTGCAAGTGT 57.369 36.364 0.00 0.00 0.00 3.55
350 351 4.358851 CCTGTTTTGAGATTTTCGTGCAA 58.641 39.130 0.00 0.00 0.00 4.08
355 356 3.426525 GCAAGCCTGTTTTGAGATTTTCG 59.573 43.478 0.00 0.00 0.00 3.46
386 387 1.082690 CCTTTTGGAAGCGAGCTCTC 58.917 55.000 12.85 3.29 44.07 3.20
387 388 0.957888 GCCTTTTGGAAGCGAGCTCT 60.958 55.000 12.85 0.00 44.07 4.09
388 389 1.237285 TGCCTTTTGGAAGCGAGCTC 61.237 55.000 2.73 2.73 44.07 4.09
389 390 1.228245 TGCCTTTTGGAAGCGAGCT 60.228 52.632 0.00 0.00 44.07 4.09
390 391 1.211190 CTGCCTTTTGGAAGCGAGC 59.789 57.895 0.00 0.00 38.69 5.03
391 392 1.878775 CCTGCCTTTTGGAAGCGAG 59.121 57.895 0.00 0.00 44.34 5.03
392 393 2.268076 GCCTGCCTTTTGGAAGCGA 61.268 57.895 0.00 0.00 44.34 4.93
393 394 1.809567 AAGCCTGCCTTTTGGAAGCG 61.810 55.000 0.00 0.00 44.34 4.68
417 418 8.627208 AGGCATACAAATGATATGAGGTAAAG 57.373 34.615 0.00 0.00 34.84 1.85
462 463 7.944729 ATCTCAAAGTTTGTAGGCATACATT 57.055 32.000 12.63 0.81 41.49 2.71
463 464 7.944729 AATCTCAAAGTTTGTAGGCATACAT 57.055 32.000 12.63 0.00 41.49 2.29
475 476 7.330946 GCGGGCTTTATTAAAATCTCAAAGTTT 59.669 33.333 0.00 0.00 0.00 2.66
489 561 5.347620 TTGTTAGAGAGCGGGCTTTATTA 57.652 39.130 0.00 0.00 0.00 0.98
553 627 4.257267 TCTGAGCTCGATTTTCTCAACA 57.743 40.909 9.64 0.00 36.54 3.33
598 980 1.131303 TCCTCCGCCCCTCTCAAAAA 61.131 55.000 0.00 0.00 0.00 1.94
599 981 1.537889 TCCTCCGCCCCTCTCAAAA 60.538 57.895 0.00 0.00 0.00 2.44
600 982 1.990060 CTCCTCCGCCCCTCTCAAA 60.990 63.158 0.00 0.00 0.00 2.69
601 983 2.364317 CTCCTCCGCCCCTCTCAA 60.364 66.667 0.00 0.00 0.00 3.02
602 984 3.347590 TCTCCTCCGCCCCTCTCA 61.348 66.667 0.00 0.00 0.00 3.27
603 985 2.520741 CTCTCCTCCGCCCCTCTC 60.521 72.222 0.00 0.00 0.00 3.20
604 986 3.024356 TCTCTCCTCCGCCCCTCT 61.024 66.667 0.00 0.00 0.00 3.69
605 987 2.366153 ATCTCTCTCCTCCGCCCCTC 62.366 65.000 0.00 0.00 0.00 4.30
606 988 1.955458 AATCTCTCTCCTCCGCCCCT 61.955 60.000 0.00 0.00 0.00 4.79
607 989 1.458588 AATCTCTCTCCTCCGCCCC 60.459 63.158 0.00 0.00 0.00 5.80
608 990 0.757188 TCAATCTCTCTCCTCCGCCC 60.757 60.000 0.00 0.00 0.00 6.13
609 991 1.000731 CATCAATCTCTCTCCTCCGCC 59.999 57.143 0.00 0.00 0.00 6.13
610 992 1.605202 GCATCAATCTCTCTCCTCCGC 60.605 57.143 0.00 0.00 0.00 5.54
611 993 1.000731 GGCATCAATCTCTCTCCTCCG 59.999 57.143 0.00 0.00 0.00 4.63
612 994 2.045524 TGGCATCAATCTCTCTCCTCC 58.954 52.381 0.00 0.00 0.00 4.30
613 995 3.071312 ACATGGCATCAATCTCTCTCCTC 59.929 47.826 0.00 0.00 0.00 3.71
614 996 3.047115 ACATGGCATCAATCTCTCTCCT 58.953 45.455 0.00 0.00 0.00 3.69
615 997 3.488778 ACATGGCATCAATCTCTCTCC 57.511 47.619 0.00 0.00 0.00 3.71
616 998 5.212532 ACTACATGGCATCAATCTCTCTC 57.787 43.478 0.00 0.00 0.00 3.20
617 999 4.261952 CGACTACATGGCATCAATCTCTCT 60.262 45.833 0.00 0.00 0.00 3.10
618 1000 3.986572 CGACTACATGGCATCAATCTCTC 59.013 47.826 0.00 0.00 0.00 3.20
619 1001 3.638627 TCGACTACATGGCATCAATCTCT 59.361 43.478 0.00 0.00 0.00 3.10
620 1002 3.982475 TCGACTACATGGCATCAATCTC 58.018 45.455 0.00 0.00 0.00 2.75
621 1003 4.613925 ATCGACTACATGGCATCAATCT 57.386 40.909 0.00 0.00 0.00 2.40
622 1004 5.679734 AAATCGACTACATGGCATCAATC 57.320 39.130 0.00 0.00 0.00 2.67
623 1005 6.455360 AAAAATCGACTACATGGCATCAAT 57.545 33.333 0.00 0.00 0.00 2.57
624 1006 5.895636 AAAAATCGACTACATGGCATCAA 57.104 34.783 0.00 0.00 0.00 2.57
711 1094 5.064707 TCAGCTACACTTTCTCAACAACAAC 59.935 40.000 0.00 0.00 0.00 3.32
712 1095 5.182487 TCAGCTACACTTTCTCAACAACAA 58.818 37.500 0.00 0.00 0.00 2.83
714 1097 5.931441 ATCAGCTACACTTTCTCAACAAC 57.069 39.130 0.00 0.00 0.00 3.32
733 1144 1.202758 ACGCTTCTGTCACCCAAATCA 60.203 47.619 0.00 0.00 0.00 2.57
758 1169 1.525995 CGCATTCCGGCCCAGTTAT 60.526 57.895 0.00 0.00 0.00 1.89
789 1202 1.446366 GATTGGGGCTCCGTACTCC 59.554 63.158 0.00 0.00 35.24 3.85
791 1204 0.620700 AAGGATTGGGGCTCCGTACT 60.621 55.000 0.00 0.00 37.88 2.73
792 1205 0.179054 GAAGGATTGGGGCTCCGTAC 60.179 60.000 0.00 0.00 37.88 3.67
794 1207 2.998949 GAAGGATTGGGGCTCCGT 59.001 61.111 0.00 0.00 37.88 4.69
795 1208 2.203070 CGAAGGATTGGGGCTCCG 60.203 66.667 0.00 0.00 37.88 4.63
797 1210 1.147153 CCTCGAAGGATTGGGGCTC 59.853 63.158 0.00 0.00 37.67 4.70
798 1211 2.378634 CCCTCGAAGGATTGGGGCT 61.379 63.158 0.00 0.00 37.67 5.19
799 1212 2.193248 CCCTCGAAGGATTGGGGC 59.807 66.667 0.00 0.00 37.67 5.80
838 1254 0.621609 TACGGTGGCTGGGCTTTATT 59.378 50.000 0.00 0.00 0.00 1.40
914 1331 2.069430 GGAGGGAGGAAGAGGCCAG 61.069 68.421 5.01 0.00 0.00 4.85
1111 1532 6.021074 CGACGAGACATATAGAAAGCATATGC 60.021 42.308 20.36 20.36 39.12 3.14
1127 1548 1.848932 CGAGACCCAACGACGAGACA 61.849 60.000 0.00 0.00 0.00 3.41
1159 1580 3.160047 AGATCCAGCGGCAGGAGG 61.160 66.667 19.21 7.29 38.83 4.30
1194 1615 2.292323 ACCGGAACCTAGAGACATCCTT 60.292 50.000 9.46 0.00 0.00 3.36
1198 1619 1.777941 GGACCGGAACCTAGAGACAT 58.222 55.000 9.46 0.00 0.00 3.06
1200 1621 2.002509 GCGGACCGGAACCTAGAGAC 62.003 65.000 17.22 0.00 0.00 3.36
1201 1622 1.751927 GCGGACCGGAACCTAGAGA 60.752 63.158 17.22 0.00 0.00 3.10
1252 1673 6.305877 GTCGAATCTTATCTTATACAGGTGCG 59.694 42.308 0.00 0.00 0.00 5.34
1253 1674 7.327275 CAGTCGAATCTTATCTTATACAGGTGC 59.673 40.741 0.00 0.00 0.00 5.01
1255 1676 7.014326 TGCAGTCGAATCTTATCTTATACAGGT 59.986 37.037 0.00 0.00 0.00 4.00
1303 1724 0.530650 ACAGCATGGATACTTCCGCG 60.531 55.000 0.00 0.00 45.89 6.46
1331 1782 0.678684 CAACCTACCGCGGGGATTTT 60.679 55.000 31.76 12.71 36.97 1.82
1339 1790 3.390135 ACATGATTATCAACCTACCGCG 58.610 45.455 0.00 0.00 0.00 6.46
1356 1807 1.995484 GCATCCGATGGATACGACATG 59.005 52.381 10.41 0.00 40.98 3.21
1360 1811 0.541998 AGGGCATCCGATGGATACGA 60.542 55.000 10.41 0.00 40.98 3.43
1362 1813 1.270907 AGAGGGCATCCGATGGATAC 58.729 55.000 10.41 0.00 40.98 2.24
1363 1814 1.902508 GAAGAGGGCATCCGATGGATA 59.097 52.381 10.41 0.00 40.98 2.59
1386 1837 2.125106 GCAAGGAGCTGTACCGGG 60.125 66.667 6.32 0.00 41.15 5.73
1404 1855 3.009143 GTGGGTCTTAATTCCACTCCACT 59.991 47.826 12.15 0.00 45.36 4.00
1407 1858 2.027469 ACGTGGGTCTTAATTCCACTCC 60.027 50.000 15.42 0.00 46.30 3.85
1427 1878 1.076533 CGGTACCAGACACGATGCAC 61.077 60.000 13.54 0.00 0.00 4.57
1461 1912 6.668323 TGTGAAGCTATTTTTCTGTACTTGC 58.332 36.000 0.00 0.00 0.00 4.01
1482 1935 5.066375 TGAGTTGGTTCAGACTTCAATTGTG 59.934 40.000 5.13 2.67 0.00 3.33
1487 1940 5.296151 AGATGAGTTGGTTCAGACTTCAA 57.704 39.130 0.00 0.00 0.00 2.69
1488 1941 4.963318 AGATGAGTTGGTTCAGACTTCA 57.037 40.909 0.00 0.00 0.00 3.02
1750 2203 8.109634 AGAAAATGGTCATGGTTATACTCAACT 58.890 33.333 0.00 0.00 0.00 3.16
1751 2204 8.184192 CAGAAAATGGTCATGGTTATACTCAAC 58.816 37.037 0.00 0.00 0.00 3.18
1752 2205 7.148086 GCAGAAAATGGTCATGGTTATACTCAA 60.148 37.037 0.00 0.00 0.00 3.02
1758 2211 4.403432 CCTGCAGAAAATGGTCATGGTTAT 59.597 41.667 17.39 0.00 0.00 1.89
1954 2407 3.209410 AGGCTTCGATTTGCTTGATAGG 58.791 45.455 5.74 0.00 0.00 2.57
2096 2549 2.248280 TCGTAAAGCTTCTGCACCAA 57.752 45.000 0.00 0.00 42.74 3.67
2286 2740 6.058833 TGTTAGTGCAGACTCAATTACCAAA 58.941 36.000 0.00 0.00 33.21 3.28
2417 2871 5.043281 GGAGGGAGTATATAGGAATCCAGGA 60.043 48.000 0.61 0.00 0.00 3.86
2436 2890 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
2437 2891 3.877508 GGTCATCTATTTTGGAACGGAGG 59.122 47.826 0.00 0.00 0.00 4.30
2438 2892 3.877508 GGGTCATCTATTTTGGAACGGAG 59.122 47.826 0.00 0.00 0.00 4.63
2439 2893 3.264706 TGGGTCATCTATTTTGGAACGGA 59.735 43.478 0.00 0.00 0.00 4.69
2440 2894 3.616219 TGGGTCATCTATTTTGGAACGG 58.384 45.455 0.00 0.00 0.00 4.44
2441 2895 4.700213 AGTTGGGTCATCTATTTTGGAACG 59.300 41.667 0.00 0.00 0.00 3.95
2442 2896 6.590234 AAGTTGGGTCATCTATTTTGGAAC 57.410 37.500 0.00 0.00 0.00 3.62
2443 2897 6.553100 ACAAAGTTGGGTCATCTATTTTGGAA 59.447 34.615 0.00 0.00 0.00 3.53
2444 2898 6.074648 ACAAAGTTGGGTCATCTATTTTGGA 58.925 36.000 0.00 0.00 0.00 3.53
2445 2899 6.345096 ACAAAGTTGGGTCATCTATTTTGG 57.655 37.500 0.00 0.00 0.00 3.28
2446 2900 8.110860 AGTACAAAGTTGGGTCATCTATTTTG 57.889 34.615 0.00 0.00 0.00 2.44
2447 2901 9.975218 ATAGTACAAAGTTGGGTCATCTATTTT 57.025 29.630 0.00 0.00 0.00 1.82
2448 2902 9.975218 AATAGTACAAAGTTGGGTCATCTATTT 57.025 29.630 0.00 0.00 0.00 1.40
2449 2903 9.396022 CAATAGTACAAAGTTGGGTCATCTATT 57.604 33.333 0.00 0.00 0.00 1.73
2450 2904 8.548877 ACAATAGTACAAAGTTGGGTCATCTAT 58.451 33.333 0.00 0.00 0.00 1.98
2451 2905 7.913789 ACAATAGTACAAAGTTGGGTCATCTA 58.086 34.615 0.00 0.00 0.00 1.98
2452 2906 6.779860 ACAATAGTACAAAGTTGGGTCATCT 58.220 36.000 0.00 0.00 0.00 2.90
2453 2907 7.448748 AACAATAGTACAAAGTTGGGTCATC 57.551 36.000 0.00 0.00 0.00 2.92
2454 2908 8.161425 ACTAACAATAGTACAAAGTTGGGTCAT 58.839 33.333 0.00 0.00 40.62 3.06
2455 2909 7.511268 ACTAACAATAGTACAAAGTTGGGTCA 58.489 34.615 0.00 0.00 40.62 4.02
2456 2910 7.974482 ACTAACAATAGTACAAAGTTGGGTC 57.026 36.000 0.00 0.00 40.62 4.46
2468 2922 8.649591 TGACCCAACTTTGTACTAACAATAGTA 58.350 33.333 0.00 0.00 44.85 1.82
2469 2923 7.511268 TGACCCAACTTTGTACTAACAATAGT 58.489 34.615 0.00 0.00 44.85 2.12
2470 2924 7.972832 TGACCCAACTTTGTACTAACAATAG 57.027 36.000 0.00 0.00 44.85 1.73
2471 2925 8.380099 AGATGACCCAACTTTGTACTAACAATA 58.620 33.333 0.00 0.00 44.85 1.90
2472 2926 7.231467 AGATGACCCAACTTTGTACTAACAAT 58.769 34.615 0.00 0.00 44.85 2.71
2473 2927 6.597562 AGATGACCCAACTTTGTACTAACAA 58.402 36.000 0.00 0.00 43.85 2.83
2474 2928 6.182507 AGATGACCCAACTTTGTACTAACA 57.817 37.500 0.00 0.00 0.00 2.41
2475 2929 8.788325 AATAGATGACCCAACTTTGTACTAAC 57.212 34.615 0.00 0.00 0.00 2.34
2476 2930 9.802039 AAAATAGATGACCCAACTTTGTACTAA 57.198 29.630 0.00 0.00 0.00 2.24
2477 2931 9.226606 CAAAATAGATGACCCAACTTTGTACTA 57.773 33.333 0.00 0.00 0.00 1.82
2478 2932 7.176690 CCAAAATAGATGACCCAACTTTGTACT 59.823 37.037 0.00 0.00 0.00 2.73
2479 2933 7.175990 TCCAAAATAGATGACCCAACTTTGTAC 59.824 37.037 0.00 0.00 0.00 2.90
2480 2934 7.235079 TCCAAAATAGATGACCCAACTTTGTA 58.765 34.615 0.00 0.00 0.00 2.41
2481 2935 6.074648 TCCAAAATAGATGACCCAACTTTGT 58.925 36.000 0.00 0.00 0.00 2.83
2482 2936 6.588719 TCCAAAATAGATGACCCAACTTTG 57.411 37.500 0.00 0.00 0.00 2.77
2483 2937 6.294508 CGTTCCAAAATAGATGACCCAACTTT 60.295 38.462 0.00 0.00 0.00 2.66
2484 2938 5.183140 CGTTCCAAAATAGATGACCCAACTT 59.817 40.000 0.00 0.00 0.00 2.66
2485 2939 4.700213 CGTTCCAAAATAGATGACCCAACT 59.300 41.667 0.00 0.00 0.00 3.16
2486 2940 4.142469 CCGTTCCAAAATAGATGACCCAAC 60.142 45.833 0.00 0.00 0.00 3.77
2487 2941 4.013728 CCGTTCCAAAATAGATGACCCAA 58.986 43.478 0.00 0.00 0.00 4.12
2488 2942 3.264706 TCCGTTCCAAAATAGATGACCCA 59.735 43.478 0.00 0.00 0.00 4.51
2489 2943 3.877508 CTCCGTTCCAAAATAGATGACCC 59.122 47.826 0.00 0.00 0.00 4.46
2490 2944 3.877508 CCTCCGTTCCAAAATAGATGACC 59.122 47.826 0.00 0.00 0.00 4.02
2491 2945 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
2492 2946 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
2493 2947 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
2494 2948 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
2495 2949 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
2496 2950 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
2497 2951 4.098894 AGTACTCCCTCCGTTCCAAAATA 58.901 43.478 0.00 0.00 0.00 1.40
2498 2952 2.910977 AGTACTCCCTCCGTTCCAAAAT 59.089 45.455 0.00 0.00 0.00 1.82
2499 2953 2.332117 AGTACTCCCTCCGTTCCAAAA 58.668 47.619 0.00 0.00 0.00 2.44
2500 2954 2.019807 AGTACTCCCTCCGTTCCAAA 57.980 50.000 0.00 0.00 0.00 3.28
2501 2955 2.905415 TAGTACTCCCTCCGTTCCAA 57.095 50.000 0.00 0.00 0.00 3.53
2502 2956 2.905415 TTAGTACTCCCTCCGTTCCA 57.095 50.000 0.00 0.00 0.00 3.53
2503 2957 4.541973 TTTTTAGTACTCCCTCCGTTCC 57.458 45.455 0.00 0.00 0.00 3.62
2504 2958 5.936372 ACAATTTTTAGTACTCCCTCCGTTC 59.064 40.000 0.00 0.00 0.00 3.95
2505 2959 5.872963 ACAATTTTTAGTACTCCCTCCGTT 58.127 37.500 0.00 0.00 0.00 4.44
2506 2960 5.494390 ACAATTTTTAGTACTCCCTCCGT 57.506 39.130 0.00 0.00 0.00 4.69
2507 2961 7.277319 GTCTAACAATTTTTAGTACTCCCTCCG 59.723 40.741 0.00 0.00 31.87 4.63
2508 2962 8.098912 TGTCTAACAATTTTTAGTACTCCCTCC 58.901 37.037 0.00 0.00 31.87 4.30
2509 2963 9.152595 CTGTCTAACAATTTTTAGTACTCCCTC 57.847 37.037 0.00 0.00 31.87 4.30
2510 2964 8.101419 CCTGTCTAACAATTTTTAGTACTCCCT 58.899 37.037 0.00 0.00 31.87 4.20
2511 2965 8.098912 TCCTGTCTAACAATTTTTAGTACTCCC 58.901 37.037 0.00 0.00 31.87 4.30
2512 2966 9.668497 ATCCTGTCTAACAATTTTTAGTACTCC 57.332 33.333 0.00 0.00 31.87 3.85
2520 2974 9.995003 TGCATAAAATCCTGTCTAACAATTTTT 57.005 25.926 7.43 4.67 33.28 1.94
2541 2995 8.575589 ACAGAAACATAATTGTGAAGTTGCATA 58.424 29.630 9.40 0.00 35.83 3.14
2639 3093 9.645059 CAGAAGAGTTCTCATAACAAGATAACA 57.355 33.333 2.64 0.00 38.11 2.41
2672 3126 4.727507 AGGACAGTTGTAGAGCTGTATG 57.272 45.455 9.39 0.00 44.89 2.39
2695 3149 6.982852 TGAGTGAACTTAGAGACTTGTTAGG 58.017 40.000 0.00 0.00 0.00 2.69
2696 3150 7.653647 ACTGAGTGAACTTAGAGACTTGTTAG 58.346 38.462 9.04 0.00 34.16 2.34
2916 3370 3.184683 CGCAGGAGCTCTTGACGC 61.185 66.667 28.36 12.84 39.10 5.19
3155 3609 3.488090 GAGGCGCCGAAGTTTCCG 61.488 66.667 23.20 0.00 0.00 4.30
3164 3618 4.554363 CAGGTAGACGAGGCGCCG 62.554 72.222 23.20 13.22 0.00 6.46
3457 3911 4.394712 CTCCAGGACCACCGCCAC 62.395 72.222 0.00 0.00 41.83 5.01
3624 4084 2.221981 GTCACAGTAGCAGCACAAGAAC 59.778 50.000 0.00 0.00 0.00 3.01
3742 4202 3.065925 ACAGCAAGAAAGTTCTGAAGCAC 59.934 43.478 12.84 0.00 37.65 4.40
3864 4339 2.898705 ACAGAGAAATCAGCGATCCAC 58.101 47.619 0.00 0.00 0.00 4.02
3868 4343 7.492524 TGAGTATTAACAGAGAAATCAGCGAT 58.507 34.615 0.00 0.00 0.00 4.58
3871 4346 8.485976 AACTGAGTATTAACAGAGAAATCAGC 57.514 34.615 0.00 0.00 36.06 4.26
3886 4361 9.236006 AGCATCATAGAACAAAAACTGAGTATT 57.764 29.630 0.00 0.00 0.00 1.89
3889 4364 7.661437 TGTAGCATCATAGAACAAAAACTGAGT 59.339 33.333 0.00 0.00 0.00 3.41
3898 4373 9.489084 GGTGTATTATGTAGCATCATAGAACAA 57.511 33.333 13.53 0.60 33.23 2.83
3966 4450 7.824289 TCAAACATTGAGAAGTTATAGACCTGG 59.176 37.037 0.00 0.00 34.08 4.45
3969 4453 9.383519 TGATCAAACATTGAGAAGTTATAGACC 57.616 33.333 0.00 0.00 43.98 3.85
3976 4460 9.657419 AAAAACTTGATCAAACATTGAGAAGTT 57.343 25.926 18.22 18.22 46.95 2.66
3998 4482 9.651913 AGAGTTTGCTGTTTTTCTCAATAAAAA 57.348 25.926 0.00 0.00 36.30 1.94
4005 4489 5.189928 TGGTAGAGTTTGCTGTTTTTCTCA 58.810 37.500 0.00 0.00 0.00 3.27
4014 4498 7.144722 TGAATTTGTATGGTAGAGTTTGCTG 57.855 36.000 0.00 0.00 0.00 4.41
4157 4676 0.832983 AGTAACTGGCCCCACGTGTA 60.833 55.000 15.65 0.00 0.00 2.90
4161 4680 0.974010 TAGGAGTAACTGGCCCCACG 60.974 60.000 0.00 0.00 0.00 4.94
4176 4695 4.521146 AGAGAGAAATAACCGTCGTAGGA 58.479 43.478 5.97 0.00 34.73 2.94
4180 4699 3.354467 AGGAGAGAGAAATAACCGTCGT 58.646 45.455 0.00 0.00 0.00 4.34
4188 4707 6.095160 GTCCACGTAGAAAGGAGAGAGAAATA 59.905 42.308 0.00 0.00 30.78 1.40
4264 4796 4.150454 AGCCGAGGGGAGGAGAGG 62.150 72.222 0.00 0.00 34.06 3.69
4528 5072 4.421554 CAGGAGAGGGGCAGGGGA 62.422 72.222 0.00 0.00 0.00 4.81
4530 5074 2.612115 AACAGGAGAGGGGCAGGG 60.612 66.667 0.00 0.00 0.00 4.45
4532 5076 2.674220 GGGAACAGGAGAGGGGCAG 61.674 68.421 0.00 0.00 0.00 4.85
4533 5077 2.610859 GGGAACAGGAGAGGGGCA 60.611 66.667 0.00 0.00 0.00 5.36
4534 5078 3.412408 GGGGAACAGGAGAGGGGC 61.412 72.222 0.00 0.00 0.00 5.80


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.