Multiple sequence alignment - TraesCS2B01G515300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G515300 chr2B 100.000 3469 0 0 1 3469 710102971 710099503 0.000000e+00 6407
1 TraesCS2B01G515300 chr2B 89.744 936 45 21 1690 2602 710045827 710044920 0.000000e+00 1149
2 TraesCS2B01G515300 chr2B 86.593 455 43 9 1061 1508 710046521 710046078 1.450000e-133 486
3 TraesCS2B01G515300 chr2B 83.461 393 33 13 658 1018 710046922 710046530 1.540000e-88 337
4 TraesCS2B01G515300 chr2B 89.474 171 12 3 3158 3322 710042355 710042185 9.750000e-51 211
5 TraesCS2B01G515300 chr2B 88.462 104 12 0 1478 1581 710046024 710045921 3.630000e-25 126
6 TraesCS2B01G515300 chr2A 84.814 2094 162 72 567 2602 722321729 722319734 0.000000e+00 1962
7 TraesCS2B01G515300 chr2A 79.897 388 27 22 12 373 722492125 722491763 1.610000e-58 237
8 TraesCS2B01G515300 chr2A 90.654 107 8 1 474 580 722491662 722491558 1.300000e-29 141
9 TraesCS2B01G515300 chr2D 87.869 1558 102 44 1470 2955 644636564 644635022 0.000000e+00 1749
10 TraesCS2B01G515300 chr2D 87.764 1561 101 40 1470 2955 587649534 587647989 0.000000e+00 1742
11 TraesCS2B01G515300 chr2D 83.513 837 85 29 695 1508 644637413 644636607 0.000000e+00 732
12 TraesCS2B01G515300 chr2D 86.409 596 48 18 12 582 644638055 644637468 3.800000e-174 621
13 TraesCS2B01G515300 chr2D 85.977 599 51 19 10 582 587651084 587650493 8.230000e-171 610
14 TraesCS2B01G515300 chr2D 86.481 466 41 16 574 1023 587650467 587650008 3.110000e-135 492
15 TraesCS2B01G515300 chr2D 81.619 457 52 13 1059 1508 587650008 587649577 1.980000e-92 350
16 TraesCS2B01G515300 chr2D 90.058 171 11 2 3158 3322 644634797 644634627 2.100000e-52 217
17 TraesCS2B01G515300 chr2D 89.474 171 12 2 3158 3322 587647749 587647579 9.750000e-51 211
18 TraesCS2B01G515300 chr6B 89.130 368 32 7 1601 1963 153228714 153229078 5.280000e-123 451
19 TraesCS2B01G515300 chr6B 84.559 136 13 4 1997 2132 153229034 153229161 1.010000e-25 128


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G515300 chr2B 710099503 710102971 3468 True 6407.00 6407 100.00000 1 3469 1 chr2B.!!$R1 3468
1 TraesCS2B01G515300 chr2B 710042185 710046922 4737 True 461.80 1149 87.54680 658 3322 5 chr2B.!!$R2 2664
2 TraesCS2B01G515300 chr2A 722319734 722321729 1995 True 1962.00 1962 84.81400 567 2602 1 chr2A.!!$R1 2035
3 TraesCS2B01G515300 chr2D 644634627 644638055 3428 True 829.75 1749 86.96225 12 3322 4 chr2D.!!$R2 3310
4 TraesCS2B01G515300 chr2D 587647579 587651084 3505 True 681.00 1742 86.26300 10 3322 5 chr2D.!!$R1 3312

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
559 592 0.179161 CTCCCTTGCACGACTCTACG 60.179 60.0 0.0 0.0 39.31 3.51 F
1297 1414 0.106569 TCATGATGGTGATGGTGCCC 60.107 55.0 0.0 0.0 0.00 5.36 F
1615 1873 0.647410 CTACGATCTTGCTGTTGCGG 59.353 55.0 0.0 0.0 43.34 5.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1988 2265 0.027455 GTGCAATATACGCAGCGCAA 59.973 50.0 16.61 3.30 40.78 4.85 R
2230 2509 0.106569 CAGGGATGCAGCCAATGGTA 60.107 55.0 24.75 0.00 0.00 3.25 R
3335 5770 0.036022 AGACTCAAGTTCAGGCCTGC 59.964 55.0 28.91 15.23 0.00 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
86 87 4.299796 GCCTGGCAAACCCCCTCA 62.300 66.667 15.17 0.00 33.59 3.86
106 107 1.675552 CCTTTTGGTGTGAACCGACT 58.324 50.000 0.00 0.00 34.07 4.18
206 218 1.116536 GGACGGAGAGGAGGAATCCC 61.117 65.000 0.00 0.00 0.00 3.85
213 225 2.514824 GGAGGAATCCCTGCGTGC 60.515 66.667 0.00 0.00 44.53 5.34
225 237 2.155636 CTGCGTGCATCTATCTGCGC 62.156 60.000 0.00 0.00 45.30 6.09
251 263 2.520968 GAGGTGGCAGTTGGGGTT 59.479 61.111 0.00 0.00 0.00 4.11
252 264 1.603739 GAGGTGGCAGTTGGGGTTC 60.604 63.158 0.00 0.00 0.00 3.62
315 327 4.760047 AGTCGGGCGCATCACCAC 62.760 66.667 10.83 2.52 0.00 4.16
321 333 3.737172 GCGCATCACCACCACCAC 61.737 66.667 0.30 0.00 0.00 4.16
342 354 3.508840 CCTGCCCCGTTGAATCGC 61.509 66.667 0.00 0.00 0.00 4.58
343 355 3.864686 CTGCCCCGTTGAATCGCG 61.865 66.667 0.00 0.00 0.00 5.87
352 364 1.201704 CGTTGAATCGCGTCAGTTCAG 60.202 52.381 5.77 0.00 33.82 3.02
353 365 2.058798 GTTGAATCGCGTCAGTTCAGA 58.941 47.619 5.77 2.50 33.82 3.27
354 366 2.654749 TGAATCGCGTCAGTTCAGAT 57.345 45.000 5.77 0.00 0.00 2.90
475 508 4.659172 TTGTTCCGGCCTGCTGGG 62.659 66.667 16.71 5.39 42.60 4.45
494 527 2.124320 GCCTTTCGCCAGCCCATA 60.124 61.111 0.00 0.00 0.00 2.74
496 529 2.189499 CCTTTCGCCAGCCCATAGC 61.189 63.158 0.00 0.00 44.25 2.97
509 542 1.277842 CCCATAGCTGGTGTGTGTGTA 59.722 52.381 0.00 0.00 41.37 2.90
540 573 2.190578 CTCTTCCCGGCCCATGTC 59.809 66.667 0.00 0.00 0.00 3.06
559 592 0.179161 CTCCCTTGCACGACTCTACG 60.179 60.000 0.00 0.00 39.31 3.51
565 598 2.754658 CACGACTCTACGCCCCCT 60.755 66.667 0.00 0.00 36.70 4.79
570 603 1.722636 GACTCTACGCCCCCTACGTG 61.723 65.000 0.00 0.00 44.79 4.49
572 605 0.464373 CTCTACGCCCCCTACGTGTA 60.464 60.000 0.00 0.00 44.79 2.90
596 663 2.556622 CACACTCCGCCTACCAATTTTT 59.443 45.455 0.00 0.00 0.00 1.94
597 664 3.754323 CACACTCCGCCTACCAATTTTTA 59.246 43.478 0.00 0.00 0.00 1.52
598 665 4.007659 ACACTCCGCCTACCAATTTTTAG 58.992 43.478 0.00 0.00 0.00 1.85
601 668 5.048294 CACTCCGCCTACCAATTTTTAGTTT 60.048 40.000 0.00 0.00 0.00 2.66
602 669 5.537295 ACTCCGCCTACCAATTTTTAGTTTT 59.463 36.000 0.00 0.00 0.00 2.43
603 670 6.041182 ACTCCGCCTACCAATTTTTAGTTTTT 59.959 34.615 0.00 0.00 0.00 1.94
604 671 6.448852 TCCGCCTACCAATTTTTAGTTTTTC 58.551 36.000 0.00 0.00 0.00 2.29
605 672 6.040616 TCCGCCTACCAATTTTTAGTTTTTCA 59.959 34.615 0.00 0.00 0.00 2.69
609 676 8.432359 GCCTACCAATTTTTAGTTTTTCATTCG 58.568 33.333 0.00 0.00 0.00 3.34
636 704 0.787787 GCAACACACGTCGCAATCTA 59.212 50.000 0.00 0.00 0.00 1.98
654 722 6.846283 GCAATCTACGTTCTCATAAAATTCGG 59.154 38.462 0.00 0.00 0.00 4.30
665 733 7.944061 TCTCATAAAATTCGGATTCGTACCTA 58.056 34.615 0.00 0.00 37.69 3.08
671 739 1.727511 CGGATTCGTACCTACCCGCA 61.728 60.000 0.00 0.00 0.00 5.69
672 740 0.249197 GGATTCGTACCTACCCGCAC 60.249 60.000 0.00 0.00 0.00 5.34
713 781 3.318313 TCCAGAAACCTCCAGAGAAACT 58.682 45.455 0.00 0.00 0.00 2.66
715 783 3.558109 CCAGAAACCTCCAGAGAAACTCC 60.558 52.174 0.00 0.00 0.00 3.85
717 785 1.363246 AACCTCCAGAGAAACTCCCC 58.637 55.000 0.00 0.00 0.00 4.81
719 787 1.203492 ACCTCCAGAGAAACTCCCCAT 60.203 52.381 0.00 0.00 0.00 4.00
793 865 1.291877 CGCTCACCAGTTAGCCACAC 61.292 60.000 0.00 0.00 35.22 3.82
806 878 2.113139 CACACCCAAACCGCCTCT 59.887 61.111 0.00 0.00 0.00 3.69
807 879 2.113139 ACACCCAAACCGCCTCTG 59.887 61.111 0.00 0.00 0.00 3.35
808 880 3.365265 CACCCAAACCGCCTCTGC 61.365 66.667 0.00 0.00 0.00 4.26
809 881 3.884774 ACCCAAACCGCCTCTGCA 61.885 61.111 0.00 0.00 37.32 4.41
810 882 2.361610 CCCAAACCGCCTCTGCAT 60.362 61.111 0.00 0.00 37.32 3.96
812 884 2.180017 CAAACCGCCTCTGCATGC 59.820 61.111 11.82 11.82 37.32 4.06
884 978 2.951101 TTCCTCCCGCGGAAGGAAC 61.951 63.158 38.71 0.00 38.12 3.62
1018 1132 6.207417 ACGTCCTCACAATCTGATTTCAAAAT 59.793 34.615 0.00 0.00 0.00 1.82
1057 1171 0.385751 TGCCTCATCGATCGAACCTC 59.614 55.000 23.50 10.84 0.00 3.85
1116 1233 1.626654 CGCTGGGTGACGTTGATGAC 61.627 60.000 0.00 0.00 0.00 3.06
1125 1242 2.035449 TGACGTTGATGACCTCGACTTT 59.965 45.455 0.00 0.00 36.27 2.66
1262 1379 0.255033 GATAAGGAGGGCGGTTTGGT 59.745 55.000 0.00 0.00 0.00 3.67
1289 1406 2.550175 TCTGGGTTCTCATGATGGTGA 58.450 47.619 0.00 0.00 0.00 4.02
1290 1407 3.117745 TCTGGGTTCTCATGATGGTGAT 58.882 45.455 0.00 0.00 0.00 3.06
1292 1409 2.092267 TGGGTTCTCATGATGGTGATGG 60.092 50.000 0.00 0.00 0.00 3.51
1293 1410 2.092212 GGGTTCTCATGATGGTGATGGT 60.092 50.000 0.00 0.00 0.00 3.55
1294 1411 2.947652 GGTTCTCATGATGGTGATGGTG 59.052 50.000 0.00 0.00 0.00 4.17
1295 1412 2.336945 TCTCATGATGGTGATGGTGC 57.663 50.000 0.00 0.00 0.00 5.01
1296 1413 1.134007 TCTCATGATGGTGATGGTGCC 60.134 52.381 0.00 0.00 0.00 5.01
1297 1414 0.106569 TCATGATGGTGATGGTGCCC 60.107 55.000 0.00 0.00 0.00 5.36
1519 1726 1.129251 GTGATCTCGACGACCGTTACA 59.871 52.381 0.00 0.00 39.75 2.41
1520 1727 2.011947 TGATCTCGACGACCGTTACAT 58.988 47.619 0.00 0.00 39.75 2.29
1615 1873 0.647410 CTACGATCTTGCTGTTGCGG 59.353 55.000 0.00 0.00 43.34 5.69
1620 1878 4.389576 CTTGCTGTTGCGGGCGAC 62.390 66.667 4.05 4.05 43.34 5.19
1808 2079 9.242477 GCAAATTTAGATCTTTTATCTTCCTGC 57.758 33.333 0.00 0.00 0.00 4.85
1834 2105 3.278574 TGGTAATCGGCAGAAATGGAAG 58.721 45.455 0.00 0.00 0.00 3.46
1864 2135 5.880332 ACCTGTACATAATTGGCAGTTAGTG 59.120 40.000 8.46 8.87 31.90 2.74
1866 2137 7.045416 CCTGTACATAATTGGCAGTTAGTGTA 58.955 38.462 8.46 12.35 31.90 2.90
1951 2226 8.739039 TGCACTATTATTACTTGCAGTTTGATT 58.261 29.630 0.00 0.00 38.25 2.57
1988 2265 6.585695 AAGTGCTTGATCATCTTTGTCATT 57.414 33.333 0.00 0.00 0.00 2.57
2295 2575 3.801114 TCGATCATCGATCAACCTGTT 57.199 42.857 5.39 0.00 44.82 3.16
2296 2576 3.706698 TCGATCATCGATCAACCTGTTC 58.293 45.455 5.39 0.00 44.82 3.18
2298 2578 3.488678 CGATCATCGATCAACCTGTTCTG 59.511 47.826 0.00 0.00 43.74 3.02
2299 2579 3.251479 TCATCGATCAACCTGTTCTGG 57.749 47.619 0.00 0.00 0.00 3.86
2300 2580 2.093500 TCATCGATCAACCTGTTCTGGG 60.093 50.000 0.00 0.00 0.00 4.45
2301 2581 1.639722 TCGATCAACCTGTTCTGGGA 58.360 50.000 0.00 0.00 0.00 4.37
2303 2583 1.550524 CGATCAACCTGTTCTGGGAGA 59.449 52.381 0.00 0.00 0.00 3.71
2304 2584 2.028112 CGATCAACCTGTTCTGGGAGAA 60.028 50.000 0.00 0.00 0.00 2.87
2305 2585 3.557054 CGATCAACCTGTTCTGGGAGAAA 60.557 47.826 0.00 0.00 35.75 2.52
2307 2587 3.045634 TCAACCTGTTCTGGGAGAAAGA 58.954 45.455 0.00 0.00 35.75 2.52
2308 2588 3.652869 TCAACCTGTTCTGGGAGAAAGAT 59.347 43.478 0.00 0.00 35.75 2.40
2309 2589 3.990959 ACCTGTTCTGGGAGAAAGATC 57.009 47.619 0.00 0.00 35.75 2.75
2314 2597 3.263261 GTTCTGGGAGAAAGATCGGAAC 58.737 50.000 0.00 0.00 35.75 3.62
2364 2662 5.768164 GGTAGGTGAAAATTTCAGAGGAACA 59.232 40.000 8.88 0.00 41.01 3.18
2365 2663 5.774498 AGGTGAAAATTTCAGAGGAACAC 57.226 39.130 8.88 0.00 41.01 3.32
2366 2664 4.584743 AGGTGAAAATTTCAGAGGAACACC 59.415 41.667 8.88 4.89 41.75 4.16
2367 2665 4.584743 GGTGAAAATTTCAGAGGAACACCT 59.415 41.667 8.88 0.00 39.89 4.00
2368 2666 5.507985 GGTGAAAATTTCAGAGGAACACCTG 60.508 44.000 8.88 0.00 39.89 4.00
2369 2667 4.037923 TGAAAATTTCAGAGGAACACCTGC 59.962 41.667 4.03 0.00 34.08 4.85
2378 2676 0.541764 GGAACACCTGCATTTCCCCA 60.542 55.000 0.00 0.00 33.87 4.96
2383 2681 1.205417 CACCTGCATTTCCCCATGTTC 59.795 52.381 0.00 0.00 0.00 3.18
2429 2727 4.517663 CAACCCTGCCATTGGACA 57.482 55.556 6.95 3.28 0.00 4.02
2442 2742 6.862209 TGCCATTGGACAATTATAAAGTCAC 58.138 36.000 6.95 10.80 34.04 3.67
2470 2783 5.163437 ACGAATTAACCCACATACTCCTCTC 60.163 44.000 0.00 0.00 0.00 3.20
2487 2800 6.210287 TCCTCTCTTCGGAGTAGAAAATTC 57.790 41.667 0.00 0.00 42.38 2.17
2492 2805 5.479306 TCTTCGGAGTAGAAAATTCTGGTG 58.521 41.667 5.93 0.00 38.19 4.17
2522 2835 5.340138 TCTCGAACAACACGTTTTCAAAAAC 59.660 36.000 8.05 8.05 43.61 2.43
2527 2840 7.162062 CGAACAACACGTTTTCAAAAACAAAAA 59.838 29.630 16.22 0.00 46.52 1.94
2565 2879 4.365899 TGTACGAGTGCACCTAATACTG 57.634 45.455 14.63 0.00 0.00 2.74
2585 2899 2.052157 GCTCTTCTCGTACACACACAC 58.948 52.381 0.00 0.00 0.00 3.82
2586 2900 2.543031 GCTCTTCTCGTACACACACACA 60.543 50.000 0.00 0.00 0.00 3.72
2619 3045 3.140325 TCCAAAGAGCTTAGTGGTTGG 57.860 47.619 9.55 7.29 37.46 3.77
2621 3047 2.554032 CCAAAGAGCTTAGTGGTTGGTG 59.446 50.000 0.00 0.00 32.58 4.17
2623 3049 2.841442 AGAGCTTAGTGGTTGGTGTC 57.159 50.000 0.00 0.00 0.00 3.67
2624 3050 2.047061 AGAGCTTAGTGGTTGGTGTCA 58.953 47.619 0.00 0.00 0.00 3.58
2641 3110 4.036380 GGTGTCAATTTTTGTTCTCGACCT 59.964 41.667 0.00 0.00 0.00 3.85
2645 3114 4.024387 TCAATTTTTGTTCTCGACCTTCCG 60.024 41.667 0.00 0.00 0.00 4.30
2646 3115 1.223187 TTTTGTTCTCGACCTTCCGC 58.777 50.000 0.00 0.00 0.00 5.54
2647 3116 0.391597 TTTGTTCTCGACCTTCCGCT 59.608 50.000 0.00 0.00 0.00 5.52
2680 3150 1.541588 GAAAATCCAGTGAGCACCACC 59.458 52.381 5.75 0.00 46.87 4.61
2683 3153 0.037303 ATCCAGTGAGCACCACCAAG 59.963 55.000 5.75 0.00 46.87 3.61
2713 3183 3.305335 GCTTGTGTTTATTCAGTGTGGGG 60.305 47.826 0.00 0.00 0.00 4.96
2715 3185 2.158534 TGTGTTTATTCAGTGTGGGGCT 60.159 45.455 0.00 0.00 0.00 5.19
2734 3204 3.059325 GGCTGCTTATAATCTTGCTCGTG 60.059 47.826 0.00 0.00 0.00 4.35
2746 3216 1.248101 TGCTCGTGCTGCTACCAGTA 61.248 55.000 11.19 0.00 41.26 2.74
2751 3221 1.739067 GTGCTGCTACCAGTAAAGGG 58.261 55.000 0.00 0.00 41.26 3.95
2757 3227 4.130118 CTGCTACCAGTAAAGGGCTTATG 58.870 47.826 0.00 0.00 34.31 1.90
2759 3229 3.747708 GCTACCAGTAAAGGGCTTATGGG 60.748 52.174 0.00 0.00 31.95 4.00
2768 3238 4.331159 AAGGGCTTATGGGTTGTTGTAT 57.669 40.909 0.00 0.00 0.00 2.29
2793 5122 9.856162 ATGTTTACAAGAAACCTTTTAGTAGGA 57.144 29.630 0.00 0.00 38.73 2.94
2800 5130 6.468543 AGAAACCTTTTAGTAGGAAGAGCAG 58.531 40.000 0.00 0.00 38.73 4.24
2821 5151 5.920840 GCAGGACAATCTTTTGTTTTCTACC 59.079 40.000 0.00 0.00 46.01 3.18
2823 5153 6.265422 CAGGACAATCTTTTGTTTTCTACCCT 59.735 38.462 0.00 0.00 46.01 4.34
2825 5155 6.923508 GGACAATCTTTTGTTTTCTACCCTTG 59.076 38.462 0.00 0.00 46.01 3.61
2826 5156 7.417456 GGACAATCTTTTGTTTTCTACCCTTGT 60.417 37.037 0.00 0.00 46.01 3.16
2841 5171 0.034059 CTTGTTCGACAGTCCAGCCT 59.966 55.000 0.00 0.00 0.00 4.58
2842 5172 0.468226 TTGTTCGACAGTCCAGCCTT 59.532 50.000 0.00 0.00 0.00 4.35
2898 5239 4.641645 TCCAGGCTTGTGTGCGGG 62.642 66.667 0.00 0.00 0.00 6.13
2919 5260 5.358922 GGGCAGCATATAAAATTTTGCTCA 58.641 37.500 13.76 0.00 43.25 4.26
2928 5269 4.977741 AAAATTTTGCTCATGCTGTTCG 57.022 36.364 1.75 0.00 40.48 3.95
2942 5283 2.225727 GCTGTTCGTTTCTTTGGGTAGG 59.774 50.000 0.00 0.00 0.00 3.18
2945 5286 2.178912 TCGTTTCTTTGGGTAGGCAG 57.821 50.000 0.00 0.00 0.00 4.85
2973 5391 0.239347 AGCTGCAGCAACATCGTTTC 59.761 50.000 38.24 6.46 45.16 2.78
2996 5414 1.940613 CCCACTAATTACGAAGGCTGC 59.059 52.381 0.00 0.00 0.00 5.25
2997 5415 1.940613 CCACTAATTACGAAGGCTGCC 59.059 52.381 11.65 11.65 0.00 4.85
2999 5417 2.866762 CACTAATTACGAAGGCTGCCTC 59.133 50.000 23.61 14.20 30.89 4.70
3003 5421 1.529152 TTACGAAGGCTGCCTCGTGA 61.529 55.000 34.92 29.43 37.70 4.35
3008 5426 0.674895 AAGGCTGCCTCGTGATGAAC 60.675 55.000 23.61 0.00 30.89 3.18
3009 5427 1.078848 GGCTGCCTCGTGATGAACT 60.079 57.895 12.43 0.00 0.00 3.01
3014 5432 3.696898 CTGCCTCGTGATGAACTAGTAC 58.303 50.000 0.00 0.00 0.00 2.73
3016 5434 3.128764 TGCCTCGTGATGAACTAGTACAG 59.871 47.826 0.00 0.00 0.00 2.74
3061 5484 6.263754 ACAAGGAAAATTGGAAGGTATGGAT 58.736 36.000 0.00 0.00 34.36 3.41
3076 5499 5.946377 AGGTATGGATTCTGAAAACAAGGTC 59.054 40.000 0.00 0.00 0.00 3.85
3077 5500 5.710099 GGTATGGATTCTGAAAACAAGGTCA 59.290 40.000 0.00 0.00 0.00 4.02
3078 5501 5.972107 ATGGATTCTGAAAACAAGGTCAG 57.028 39.130 0.00 0.00 42.23 3.51
3080 5503 4.821805 TGGATTCTGAAAACAAGGTCAGTC 59.178 41.667 0.00 0.00 41.69 3.51
3082 5505 5.049129 GGATTCTGAAAACAAGGTCAGTCTG 60.049 44.000 0.00 0.00 41.69 3.51
3083 5506 4.753516 TCTGAAAACAAGGTCAGTCTGA 57.246 40.909 0.00 0.00 41.69 3.27
3084 5507 5.097742 TCTGAAAACAAGGTCAGTCTGAA 57.902 39.130 3.51 0.00 41.69 3.02
3085 5508 5.684704 TCTGAAAACAAGGTCAGTCTGAAT 58.315 37.500 3.51 0.00 41.69 2.57
3086 5509 6.826668 TCTGAAAACAAGGTCAGTCTGAATA 58.173 36.000 3.51 0.00 41.69 1.75
3090 5513 5.552870 AACAAGGTCAGTCTGAATACAGT 57.447 39.130 3.51 0.00 43.81 3.55
3091 5514 5.552870 ACAAGGTCAGTCTGAATACAGTT 57.447 39.130 3.51 0.00 43.81 3.16
3092 5515 5.930135 ACAAGGTCAGTCTGAATACAGTTT 58.070 37.500 3.51 0.00 43.81 2.66
3093 5516 5.992217 ACAAGGTCAGTCTGAATACAGTTTC 59.008 40.000 3.51 0.00 43.81 2.78
3094 5517 5.808366 AGGTCAGTCTGAATACAGTTTCA 57.192 39.130 3.51 0.00 43.81 2.69
3095 5518 6.365970 AGGTCAGTCTGAATACAGTTTCAT 57.634 37.500 3.51 0.00 43.81 2.57
3096 5519 6.169094 AGGTCAGTCTGAATACAGTTTCATG 58.831 40.000 3.51 0.00 43.81 3.07
3097 5520 5.934625 GGTCAGTCTGAATACAGTTTCATGT 59.065 40.000 3.51 0.00 43.81 3.21
3112 5535 8.260114 ACAGTTTCATGTTTTCCTTCAGAATTT 58.740 29.630 0.00 0.00 33.44 1.82
3121 5544 4.640771 TCCTTCAGAATTTAGCAGTGGT 57.359 40.909 0.00 0.00 0.00 4.16
3122 5545 4.579869 TCCTTCAGAATTTAGCAGTGGTC 58.420 43.478 0.00 0.00 0.00 4.02
3123 5546 4.287067 TCCTTCAGAATTTAGCAGTGGTCT 59.713 41.667 0.00 0.00 0.00 3.85
3124 5547 4.633565 CCTTCAGAATTTAGCAGTGGTCTC 59.366 45.833 0.00 0.00 0.00 3.36
3125 5548 5.486526 CTTCAGAATTTAGCAGTGGTCTCT 58.513 41.667 0.00 0.00 0.00 3.10
3126 5549 4.825422 TCAGAATTTAGCAGTGGTCTCTG 58.175 43.478 0.00 7.59 38.35 3.35
3127 5550 4.284490 TCAGAATTTAGCAGTGGTCTCTGT 59.716 41.667 16.66 0.00 37.70 3.41
3128 5551 4.391216 CAGAATTTAGCAGTGGTCTCTGTG 59.609 45.833 0.00 0.00 37.70 3.66
3129 5552 2.839486 TTTAGCAGTGGTCTCTGTGG 57.161 50.000 0.00 0.00 37.70 4.17
3130 5553 1.717032 TTAGCAGTGGTCTCTGTGGT 58.283 50.000 0.00 0.00 37.70 4.16
3131 5554 1.257743 TAGCAGTGGTCTCTGTGGTC 58.742 55.000 0.00 0.00 37.70 4.02
3132 5555 0.470833 AGCAGTGGTCTCTGTGGTCT 60.471 55.000 0.00 0.00 37.70 3.85
3133 5556 0.037790 GCAGTGGTCTCTGTGGTCTC 60.038 60.000 0.00 0.00 37.70 3.36
3134 5557 1.626686 CAGTGGTCTCTGTGGTCTCT 58.373 55.000 0.00 0.00 0.00 3.10
3135 5558 1.271934 CAGTGGTCTCTGTGGTCTCTG 59.728 57.143 0.00 0.00 0.00 3.35
3136 5559 0.037790 GTGGTCTCTGTGGTCTCTGC 60.038 60.000 0.00 0.00 0.00 4.26
3137 5560 0.469892 TGGTCTCTGTGGTCTCTGCA 60.470 55.000 0.00 0.00 0.00 4.41
3138 5561 0.246086 GGTCTCTGTGGTCTCTGCAG 59.754 60.000 7.63 7.63 0.00 4.41
3139 5562 0.965439 GTCTCTGTGGTCTCTGCAGT 59.035 55.000 14.67 0.00 0.00 4.40
3140 5563 1.067915 GTCTCTGTGGTCTCTGCAGTC 60.068 57.143 14.67 5.73 0.00 3.51
3141 5564 1.202989 TCTCTGTGGTCTCTGCAGTCT 60.203 52.381 14.67 0.00 0.00 3.24
3142 5565 0.964700 TCTGTGGTCTCTGCAGTCTG 59.035 55.000 14.67 5.73 0.00 3.51
3143 5566 0.964700 CTGTGGTCTCTGCAGTCTGA 59.035 55.000 14.67 8.09 0.00 3.27
3144 5567 1.342496 CTGTGGTCTCTGCAGTCTGAA 59.658 52.381 14.67 0.00 0.00 3.02
3145 5568 1.973515 TGTGGTCTCTGCAGTCTGAAT 59.026 47.619 14.67 0.00 0.00 2.57
3146 5569 3.165071 TGTGGTCTCTGCAGTCTGAATA 58.835 45.455 14.67 1.43 0.00 1.75
3147 5570 3.056536 TGTGGTCTCTGCAGTCTGAATAC 60.057 47.826 14.67 12.31 0.00 1.89
3148 5571 3.056536 GTGGTCTCTGCAGTCTGAATACA 60.057 47.826 14.67 8.06 0.00 2.29
3149 5572 3.578282 TGGTCTCTGCAGTCTGAATACAA 59.422 43.478 14.67 0.00 0.00 2.41
3150 5573 4.180057 GGTCTCTGCAGTCTGAATACAAG 58.820 47.826 14.67 0.00 0.00 3.16
3151 5574 4.180057 GTCTCTGCAGTCTGAATACAAGG 58.820 47.826 14.67 0.00 0.00 3.61
3152 5575 4.081972 GTCTCTGCAGTCTGAATACAAGGA 60.082 45.833 14.67 0.00 0.00 3.36
3153 5576 4.528206 TCTCTGCAGTCTGAATACAAGGAA 59.472 41.667 14.67 0.00 0.00 3.36
3154 5577 5.012046 TCTCTGCAGTCTGAATACAAGGAAA 59.988 40.000 14.67 0.00 0.00 3.13
3155 5578 5.620206 TCTGCAGTCTGAATACAAGGAAAA 58.380 37.500 14.67 0.00 0.00 2.29
3156 5579 5.470098 TCTGCAGTCTGAATACAAGGAAAAC 59.530 40.000 14.67 0.00 0.00 2.43
3185 5614 5.719563 TGTTACAATCCTATGGTCTCTGTGA 59.280 40.000 0.00 0.00 0.00 3.58
3251 5680 7.576861 TCTGCATATGTTGAATGATCACAAT 57.423 32.000 0.00 0.00 34.61 2.71
3261 5690 9.234827 TGTTGAATGATCACAATACTCTTTGAT 57.765 29.630 0.00 0.00 34.61 2.57
3263 5692 8.797350 TGAATGATCACAATACTCTTTGATGT 57.203 30.769 0.00 0.00 0.00 3.06
3290 5723 9.300681 CTAGATCTTCTATCAGGTTTGAGATCT 57.699 37.037 14.92 14.92 40.53 2.75
3303 5738 5.248640 GTTTGAGATCTCATCCTGTTCCAA 58.751 41.667 25.64 10.98 39.64 3.53
3305 5740 6.813293 TTGAGATCTCATCCTGTTCCAATA 57.187 37.500 25.64 3.56 39.64 1.90
3318 5753 3.053768 TGTTCCAATATGCATGGACTCCA 60.054 43.478 10.16 0.00 46.37 3.86
3322 5757 2.620115 CAATATGCATGGACTCCACCAC 59.380 50.000 10.16 0.00 43.03 4.16
3323 5758 0.546122 TATGCATGGACTCCACCACC 59.454 55.000 10.16 0.00 43.03 4.61
3324 5759 1.499913 ATGCATGGACTCCACCACCA 61.500 55.000 0.00 0.00 43.03 4.17
3325 5760 1.304282 GCATGGACTCCACCACCAT 59.696 57.895 0.00 0.00 43.97 3.55
3327 5762 2.791253 ATGGACTCCACCACCATGT 58.209 52.632 0.00 0.00 43.03 3.21
3328 5763 0.329261 ATGGACTCCACCACCATGTG 59.671 55.000 0.00 0.00 43.03 3.21
3339 5774 3.929002 CCATGTGGATGGTGCAGG 58.071 61.111 0.00 0.00 43.98 4.85
3340 5775 2.420568 CCATGTGGATGGTGCAGGC 61.421 63.158 0.00 0.00 43.98 4.85
3341 5776 2.043652 ATGTGGATGGTGCAGGCC 60.044 61.111 0.00 0.00 0.00 5.19
3342 5777 2.619446 ATGTGGATGGTGCAGGCCT 61.619 57.895 0.00 0.00 0.00 5.19
3343 5778 2.753043 GTGGATGGTGCAGGCCTG 60.753 66.667 29.34 29.34 0.00 4.85
3344 5779 2.934932 TGGATGGTGCAGGCCTGA 60.935 61.111 37.21 18.42 0.00 3.86
3345 5780 2.356278 GGATGGTGCAGGCCTGAA 59.644 61.111 37.21 25.79 0.00 3.02
3346 5781 2.048603 GGATGGTGCAGGCCTGAAC 61.049 63.158 37.21 35.14 38.43 3.18
3347 5782 1.001641 GATGGTGCAGGCCTGAACT 60.002 57.895 37.48 23.15 39.14 3.01
3348 5783 0.610232 GATGGTGCAGGCCTGAACTT 60.610 55.000 37.48 26.99 39.14 2.66
3349 5784 0.896940 ATGGTGCAGGCCTGAACTTG 60.897 55.000 37.48 13.36 39.14 3.16
3350 5785 1.228245 GGTGCAGGCCTGAACTTGA 60.228 57.895 37.48 11.68 39.14 3.02
3351 5786 1.239968 GGTGCAGGCCTGAACTTGAG 61.240 60.000 37.48 10.92 39.14 3.02
3352 5787 0.536006 GTGCAGGCCTGAACTTGAGT 60.536 55.000 37.21 0.00 36.20 3.41
3353 5788 0.250467 TGCAGGCCTGAACTTGAGTC 60.250 55.000 37.21 15.32 0.00 3.36
3354 5789 0.036022 GCAGGCCTGAACTTGAGTCT 59.964 55.000 37.21 0.00 0.00 3.24
3355 5790 1.943507 GCAGGCCTGAACTTGAGTCTC 60.944 57.143 37.21 9.96 0.00 3.36
3356 5791 1.622811 CAGGCCTGAACTTGAGTCTCT 59.377 52.381 29.88 0.00 0.00 3.10
3357 5792 1.622811 AGGCCTGAACTTGAGTCTCTG 59.377 52.381 3.11 0.00 0.00 3.35
3358 5793 1.338579 GGCCTGAACTTGAGTCTCTGG 60.339 57.143 0.00 11.33 32.73 3.86
3359 5794 1.620819 GCCTGAACTTGAGTCTCTGGA 59.379 52.381 16.02 0.00 32.04 3.86
3360 5795 2.235898 GCCTGAACTTGAGTCTCTGGAT 59.764 50.000 16.02 0.00 32.04 3.41
3361 5796 3.678529 GCCTGAACTTGAGTCTCTGGATC 60.679 52.174 16.02 0.00 32.04 3.36
3362 5797 3.118811 CCTGAACTTGAGTCTCTGGATCC 60.119 52.174 4.20 4.20 32.04 3.36
3363 5798 3.510459 TGAACTTGAGTCTCTGGATCCA 58.490 45.455 15.27 15.27 0.00 3.41
3364 5799 3.513119 TGAACTTGAGTCTCTGGATCCAG 59.487 47.826 32.60 32.60 44.86 3.86
3365 5800 2.465813 ACTTGAGTCTCTGGATCCAGG 58.534 52.381 35.95 26.87 43.75 4.45
3366 5801 1.138661 CTTGAGTCTCTGGATCCAGGC 59.861 57.143 35.95 26.08 43.75 4.85
3367 5802 0.337773 TGAGTCTCTGGATCCAGGCT 59.662 55.000 35.95 29.45 43.75 4.58
3368 5803 0.752054 GAGTCTCTGGATCCAGGCTG 59.248 60.000 35.95 26.05 43.75 4.85
3369 5804 1.145819 GTCTCTGGATCCAGGCTGC 59.854 63.158 35.95 21.62 43.75 5.25
3370 5805 2.068821 TCTCTGGATCCAGGCTGCC 61.069 63.158 35.95 11.65 43.75 4.85
3371 5806 3.092511 TCTGGATCCAGGCTGCCC 61.093 66.667 35.95 10.21 43.75 5.36
3372 5807 4.201122 CTGGATCCAGGCTGCCCC 62.201 72.222 31.14 9.61 40.17 5.80
3374 5809 4.512914 GGATCCAGGCTGCCCCAC 62.513 72.222 16.57 2.80 35.39 4.61
3375 5810 3.731728 GATCCAGGCTGCCCCACA 61.732 66.667 16.57 0.00 35.39 4.17
3376 5811 4.052518 ATCCAGGCTGCCCCACAC 62.053 66.667 16.57 0.00 35.39 3.82
3378 5813 4.729918 CCAGGCTGCCCCACACTC 62.730 72.222 16.57 0.00 35.39 3.51
3379 5814 4.729918 CAGGCTGCCCCACACTCC 62.730 72.222 16.57 0.00 35.39 3.85
3387 5822 4.636435 CCCACACTCCGCCCGTTT 62.636 66.667 0.00 0.00 0.00 3.60
3388 5823 2.344500 CCACACTCCGCCCGTTTA 59.656 61.111 0.00 0.00 0.00 2.01
3389 5824 1.301874 CCACACTCCGCCCGTTTAA 60.302 57.895 0.00 0.00 0.00 1.52
3390 5825 0.675522 CCACACTCCGCCCGTTTAAT 60.676 55.000 0.00 0.00 0.00 1.40
3391 5826 1.405797 CCACACTCCGCCCGTTTAATA 60.406 52.381 0.00 0.00 0.00 0.98
3392 5827 2.557317 CACACTCCGCCCGTTTAATAT 58.443 47.619 0.00 0.00 0.00 1.28
3393 5828 2.542595 CACACTCCGCCCGTTTAATATC 59.457 50.000 0.00 0.00 0.00 1.63
3394 5829 2.433239 ACACTCCGCCCGTTTAATATCT 59.567 45.455 0.00 0.00 0.00 1.98
3395 5830 3.118519 ACACTCCGCCCGTTTAATATCTT 60.119 43.478 0.00 0.00 0.00 2.40
3396 5831 3.875134 CACTCCGCCCGTTTAATATCTTT 59.125 43.478 0.00 0.00 0.00 2.52
3397 5832 5.051816 CACTCCGCCCGTTTAATATCTTTA 58.948 41.667 0.00 0.00 0.00 1.85
3398 5833 5.699458 CACTCCGCCCGTTTAATATCTTTAT 59.301 40.000 0.00 0.00 0.00 1.40
3399 5834 6.204108 CACTCCGCCCGTTTAATATCTTTATT 59.796 38.462 0.00 0.00 32.75 1.40
3400 5835 7.385752 CACTCCGCCCGTTTAATATCTTTATTA 59.614 37.037 0.00 0.00 30.64 0.98
3401 5836 8.098912 ACTCCGCCCGTTTAATATCTTTATTAT 58.901 33.333 0.00 0.00 31.86 1.28
3402 5837 8.851541 TCCGCCCGTTTAATATCTTTATTATT 57.148 30.769 0.00 0.00 31.86 1.40
3403 5838 8.938906 TCCGCCCGTTTAATATCTTTATTATTC 58.061 33.333 0.00 0.00 31.86 1.75
3404 5839 8.179615 CCGCCCGTTTAATATCTTTATTATTCC 58.820 37.037 0.00 0.00 31.86 3.01
3405 5840 8.723311 CGCCCGTTTAATATCTTTATTATTCCA 58.277 33.333 0.00 0.00 31.86 3.53
3456 5891 9.989869 GGTTTCTATCTAAAATTCTTTTCTCCG 57.010 33.333 0.00 0.00 34.19 4.63
3457 5892 9.989869 GTTTCTATCTAAAATTCTTTTCTCCGG 57.010 33.333 0.00 0.00 34.19 5.14
3458 5893 8.732746 TTCTATCTAAAATTCTTTTCTCCGGG 57.267 34.615 0.00 0.00 34.19 5.73
3459 5894 7.280356 TCTATCTAAAATTCTTTTCTCCGGGG 58.720 38.462 0.00 0.00 34.19 5.73
3460 5895 5.251182 TCTAAAATTCTTTTCTCCGGGGT 57.749 39.130 0.00 0.00 34.19 4.95
3461 5896 5.637127 TCTAAAATTCTTTTCTCCGGGGTT 58.363 37.500 0.00 0.00 34.19 4.11
3462 5897 4.600692 AAAATTCTTTTCTCCGGGGTTG 57.399 40.909 0.00 0.00 0.00 3.77
3463 5898 3.518992 AATTCTTTTCTCCGGGGTTGA 57.481 42.857 0.00 0.00 0.00 3.18
3464 5899 2.561478 TTCTTTTCTCCGGGGTTGAG 57.439 50.000 0.00 0.00 0.00 3.02
3465 5900 1.430992 TCTTTTCTCCGGGGTTGAGT 58.569 50.000 0.00 0.00 0.00 3.41
3466 5901 2.612000 TCTTTTCTCCGGGGTTGAGTA 58.388 47.619 0.00 0.00 0.00 2.59
3467 5902 2.565834 TCTTTTCTCCGGGGTTGAGTAG 59.434 50.000 0.00 0.00 0.00 2.57
3468 5903 0.611714 TTTCTCCGGGGTTGAGTAGC 59.388 55.000 0.00 0.00 0.00 3.58
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
78 79 1.293683 ACACCAAAAGGTGAGGGGGT 61.294 55.000 20.52 0.00 41.92 4.95
82 83 1.681264 GGTTCACACCAAAAGGTGAGG 59.319 52.381 20.52 11.99 44.12 3.86
83 84 1.333619 CGGTTCACACCAAAAGGTGAG 59.666 52.381 20.52 13.05 44.53 3.51
86 87 1.064979 AGTCGGTTCACACCAAAAGGT 60.065 47.619 0.00 0.00 44.53 3.50
206 218 1.851309 CGCAGATAGATGCACGCAG 59.149 57.895 0.00 0.00 46.87 5.18
213 225 0.039165 TACCGCAGCGCAGATAGATG 60.039 55.000 11.47 0.00 0.00 2.90
225 237 3.989698 CTGCCACCTCGTACCGCAG 62.990 68.421 0.00 0.00 40.81 5.18
321 333 3.583882 ATTCAACGGGGCAGGTGGG 62.584 63.158 0.00 0.00 0.00 4.61
342 354 3.727079 GCTGATGCAAATCTGAACTGACG 60.727 47.826 0.00 0.00 39.41 4.35
343 355 3.727079 CGCTGATGCAAATCTGAACTGAC 60.727 47.826 0.00 0.00 39.64 3.51
384 396 8.749026 ACCCGATCAGTGTATATATACCTAAG 57.251 38.462 18.20 7.61 32.33 2.18
385 397 8.963725 CAACCCGATCAGTGTATATATACCTAA 58.036 37.037 18.20 4.11 32.33 2.69
386 398 8.111545 ACAACCCGATCAGTGTATATATACCTA 58.888 37.037 18.20 0.18 32.33 3.08
388 400 7.122353 AGACAACCCGATCAGTGTATATATACC 59.878 40.741 18.20 10.67 32.33 2.73
389 401 8.053026 AGACAACCCGATCAGTGTATATATAC 57.947 38.462 14.86 14.86 0.00 1.47
390 402 7.886446 TGAGACAACCCGATCAGTGTATATATA 59.114 37.037 0.00 0.00 0.00 0.86
391 403 6.719829 TGAGACAACCCGATCAGTGTATATAT 59.280 38.462 0.00 0.00 0.00 0.86
393 405 4.893524 TGAGACAACCCGATCAGTGTATAT 59.106 41.667 0.00 0.00 0.00 0.86
401 420 0.038618 CACGTGAGACAACCCGATCA 60.039 55.000 10.90 0.00 0.00 2.92
426 445 1.070786 GAGGCGTGGACACAAAGGA 59.929 57.895 3.12 0.00 0.00 3.36
493 526 1.270094 GCTGTACACACACACCAGCTA 60.270 52.381 0.00 0.00 43.89 3.32
494 527 0.532862 GCTGTACACACACACCAGCT 60.533 55.000 0.00 0.00 43.89 4.24
496 529 0.884704 GGGCTGTACACACACACCAG 60.885 60.000 0.00 0.00 0.00 4.00
497 530 1.147376 GGGCTGTACACACACACCA 59.853 57.895 0.00 0.00 0.00 4.17
498 531 0.682852 TAGGGCTGTACACACACACC 59.317 55.000 0.00 0.00 0.00 4.16
499 532 1.607251 GGTAGGGCTGTACACACACAC 60.607 57.143 0.00 0.00 0.00 3.82
500 533 0.682852 GGTAGGGCTGTACACACACA 59.317 55.000 0.00 0.00 0.00 3.72
501 534 0.389426 CGGTAGGGCTGTACACACAC 60.389 60.000 0.00 0.00 0.00 3.82
502 535 1.969085 CGGTAGGGCTGTACACACA 59.031 57.895 0.00 0.00 0.00 3.72
509 542 3.925914 AAGAGGGCGGTAGGGCTGT 62.926 63.158 0.00 0.00 41.87 4.40
540 573 0.179161 CGTAGAGTCGTGCAAGGGAG 60.179 60.000 0.00 0.00 0.00 4.30
545 578 2.260434 GGGCGTAGAGTCGTGCAA 59.740 61.111 0.00 0.00 0.00 4.08
559 592 1.523032 GTGCATACACGTAGGGGGC 60.523 63.158 0.00 0.00 36.98 5.80
570 603 0.529992 GGTAGGCGGAGTGTGCATAC 60.530 60.000 5.29 5.29 45.89 2.39
572 605 1.836999 TTGGTAGGCGGAGTGTGCAT 61.837 55.000 0.00 0.00 0.00 3.96
583 650 8.432359 CGAATGAAAAACTAAAAATTGGTAGGC 58.568 33.333 1.85 0.00 0.00 3.93
596 663 8.779303 TGTTGCTATCTTTCGAATGAAAAACTA 58.221 29.630 16.60 4.87 43.21 2.24
597 664 7.591426 GTGTTGCTATCTTTCGAATGAAAAACT 59.409 33.333 16.60 4.00 43.21 2.66
598 665 7.378461 TGTGTTGCTATCTTTCGAATGAAAAAC 59.622 33.333 16.60 16.35 43.21 2.43
601 668 6.370593 GTGTGTTGCTATCTTTCGAATGAAA 58.629 36.000 16.60 5.08 41.69 2.69
602 669 5.389411 CGTGTGTTGCTATCTTTCGAATGAA 60.389 40.000 16.60 6.75 0.00 2.57
603 670 4.091365 CGTGTGTTGCTATCTTTCGAATGA 59.909 41.667 15.22 15.22 0.00 2.57
604 671 4.143115 ACGTGTGTTGCTATCTTTCGAATG 60.143 41.667 0.00 0.78 0.00 2.67
605 672 3.994392 ACGTGTGTTGCTATCTTTCGAAT 59.006 39.130 0.00 0.00 0.00 3.34
609 676 3.354771 CGACGTGTGTTGCTATCTTTC 57.645 47.619 0.00 0.00 0.00 2.62
636 704 5.579511 ACGAATCCGAATTTTATGAGAACGT 59.420 36.000 0.00 0.00 39.50 3.99
654 722 0.743097 AGTGCGGGTAGGTACGAATC 59.257 55.000 0.00 0.00 0.00 2.52
671 739 0.955428 TTCCTACGTGACGCGGTAGT 60.955 55.000 12.47 7.56 46.52 2.73
672 740 0.168788 TTTCCTACGTGACGCGGTAG 59.831 55.000 12.47 12.05 46.52 3.18
713 781 1.115326 ATCGAGATGCGTGATGGGGA 61.115 55.000 0.00 0.00 41.80 4.81
715 783 1.005804 CGATCGAGATGCGTGATGGG 61.006 60.000 10.26 0.00 41.80 4.00
717 785 1.910175 GATCGATCGAGATGCGTGATG 59.090 52.381 23.84 0.00 41.80 3.07
719 787 3.755697 GATCGATCGAGATGCGTGA 57.244 52.632 23.84 0.00 41.80 4.35
749 821 3.444742 GTGGATTGATTTGATCTGGTGCA 59.555 43.478 0.00 0.00 0.00 4.57
793 865 2.361610 ATGCAGAGGCGGTTTGGG 60.362 61.111 0.00 0.00 45.35 4.12
804 876 2.434185 GGAACCGACGCATGCAGA 60.434 61.111 19.57 0.00 0.00 4.26
1036 1150 0.598680 GGTTCGATCGATGAGGCAGG 60.599 60.000 20.18 0.00 0.00 4.85
1038 1152 0.385751 GAGGTTCGATCGATGAGGCA 59.614 55.000 20.18 0.00 0.00 4.75
1040 1154 0.039978 CGGAGGTTCGATCGATGAGG 60.040 60.000 20.18 2.95 0.00 3.86
1099 1216 0.321671 AGGTCATCAACGTCACCCAG 59.678 55.000 0.00 0.00 0.00 4.45
1116 1233 0.396811 AACCCAGGTCAAAGTCGAGG 59.603 55.000 0.00 0.00 0.00 4.63
1125 1242 1.003812 CCGTCCATAAAACCCAGGTCA 59.996 52.381 0.00 0.00 0.00 4.02
1179 1296 2.284625 TCGGTGAGGCCCATGTCT 60.285 61.111 0.00 0.00 0.00 3.41
1234 1351 2.131709 CCTCCTTATCGGCCACGGA 61.132 63.158 2.24 0.00 41.39 4.69
1262 1379 4.656100 TCATGAGAACCCAGATCCAAAA 57.344 40.909 0.00 0.00 0.00 2.44
1363 1486 4.642542 GACCTCGCGATACCCGGC 62.643 72.222 10.36 0.00 39.04 6.13
1365 1488 4.323843 CCGACCTCGCGATACCCG 62.324 72.222 10.36 11.14 42.21 5.28
1369 1492 3.646976 CTCGCCGACCTCGCGATA 61.647 66.667 10.36 0.00 42.90 2.92
1377 1500 2.278013 GTCGACATCTCGCCGACC 60.278 66.667 11.55 0.00 44.67 4.79
1379 1502 0.306840 GTATGTCGACATCTCGCCGA 59.693 55.000 33.11 12.46 39.96 5.54
1395 1518 1.141881 CTCCAGCTCGGTTGCGTAT 59.858 57.895 2.68 0.00 38.13 3.06
1401 1524 1.545706 GGAACCTCTCCAGCTCGGTT 61.546 60.000 0.00 0.00 44.67 4.44
1403 1526 2.896443 GGAACCTCTCCAGCTCGG 59.104 66.667 0.00 0.00 44.67 4.63
1462 1585 2.176273 CGGCAAGCTCCTTCGGATG 61.176 63.158 0.00 0.00 0.00 3.51
1561 1768 0.656785 ACGAGATCGCCGAAGTAGTC 59.343 55.000 15.55 0.00 44.43 2.59
1565 1772 1.722677 GAGACGAGATCGCCGAAGT 59.277 57.895 15.55 0.00 44.43 3.01
1834 2105 6.019779 TGCCAATTATGTACAGGTTGTTTC 57.980 37.500 0.33 0.00 0.00 2.78
1864 2135 9.479278 GAAACGAAATTTCTTCATCTAGCTTAC 57.521 33.333 15.92 0.00 43.06 2.34
1866 2137 8.017946 GTGAAACGAAATTTCTTCATCTAGCTT 58.982 33.333 19.80 1.31 46.05 3.74
1951 2226 7.980662 TGATCAAGCACTTTCAGAAAAATCAAA 59.019 29.630 0.00 0.00 0.00 2.69
1954 2229 8.027771 AGATGATCAAGCACTTTCAGAAAAATC 58.972 33.333 0.00 0.00 0.00 2.17
1955 2230 7.893658 AGATGATCAAGCACTTTCAGAAAAAT 58.106 30.769 0.00 0.00 0.00 1.82
1988 2265 0.027455 GTGCAATATACGCAGCGCAA 59.973 50.000 16.61 3.30 40.78 4.85
2230 2509 0.106569 CAGGGATGCAGCCAATGGTA 60.107 55.000 24.75 0.00 0.00 3.25
2266 2545 0.600057 TCGATGATCGATCAGGCCAG 59.400 55.000 30.11 19.01 44.82 4.85
2294 2574 2.094182 CGTTCCGATCTTTCTCCCAGAA 60.094 50.000 0.00 0.00 31.28 3.02
2295 2575 1.476891 CGTTCCGATCTTTCTCCCAGA 59.523 52.381 0.00 0.00 0.00 3.86
2296 2576 1.471676 CCGTTCCGATCTTTCTCCCAG 60.472 57.143 0.00 0.00 0.00 4.45
2298 2578 0.810426 GCCGTTCCGATCTTTCTCCC 60.810 60.000 0.00 0.00 0.00 4.30
2299 2579 1.146358 CGCCGTTCCGATCTTTCTCC 61.146 60.000 0.00 0.00 0.00 3.71
2300 2580 1.753468 GCGCCGTTCCGATCTTTCTC 61.753 60.000 0.00 0.00 0.00 2.87
2301 2581 1.810030 GCGCCGTTCCGATCTTTCT 60.810 57.895 0.00 0.00 0.00 2.52
2303 2583 2.818274 GGCGCCGTTCCGATCTTT 60.818 61.111 12.58 0.00 0.00 2.52
2304 2584 3.771160 AGGCGCCGTTCCGATCTT 61.771 61.111 23.20 0.00 0.00 2.40
2305 2585 4.514577 CAGGCGCCGTTCCGATCT 62.515 66.667 23.20 0.00 0.00 2.75
2323 2615 0.175073 ACCGGTTCGAATACCTGAGC 59.825 55.000 0.00 0.00 35.97 4.26
2364 2662 1.560505 GAACATGGGGAAATGCAGGT 58.439 50.000 0.00 0.00 0.00 4.00
2365 2663 0.826062 GGAACATGGGGAAATGCAGG 59.174 55.000 0.00 0.00 0.00 4.85
2366 2664 1.856629 AGGAACATGGGGAAATGCAG 58.143 50.000 0.00 0.00 0.00 4.41
2367 2665 2.178580 GAAGGAACATGGGGAAATGCA 58.821 47.619 0.00 0.00 0.00 3.96
2368 2666 2.460669 AGAAGGAACATGGGGAAATGC 58.539 47.619 0.00 0.00 0.00 3.56
2369 2667 5.448654 TCATAGAAGGAACATGGGGAAATG 58.551 41.667 0.00 0.00 0.00 2.32
2378 2676 8.223330 AGGCAGAAAATATCATAGAAGGAACAT 58.777 33.333 0.00 0.00 0.00 2.71
2383 2681 8.348507 GTGAAAGGCAGAAAATATCATAGAAGG 58.651 37.037 0.00 0.00 0.00 3.46
2429 2727 8.606602 GTTAATTCGTCCCGTGACTTTATAATT 58.393 33.333 0.00 0.00 39.47 1.40
2442 2742 2.032680 ATGTGGGTTAATTCGTCCCG 57.967 50.000 7.64 0.00 43.75 5.14
2451 2751 4.401519 CGAAGAGAGGAGTATGTGGGTTAA 59.598 45.833 0.00 0.00 0.00 2.01
2454 2754 2.379972 CGAAGAGAGGAGTATGTGGGT 58.620 52.381 0.00 0.00 0.00 4.51
2455 2755 1.683917 CCGAAGAGAGGAGTATGTGGG 59.316 57.143 0.00 0.00 0.00 4.61
2456 2756 2.656002 TCCGAAGAGAGGAGTATGTGG 58.344 52.381 0.00 0.00 33.19 4.17
2470 2783 4.631813 CCACCAGAATTTTCTACTCCGAAG 59.368 45.833 0.00 0.00 35.34 3.79
2487 2800 0.249868 TGTTCGAGAGTTGCCACCAG 60.250 55.000 0.00 0.00 0.00 4.00
2492 2805 0.232303 CGTGTTGTTCGAGAGTTGCC 59.768 55.000 0.00 0.00 0.00 4.52
2553 2867 3.181485 ACGAGAAGAGCAGTATTAGGTGC 60.181 47.826 0.00 0.00 40.17 5.01
2565 2879 2.052157 GTGTGTGTGTACGAGAAGAGC 58.948 52.381 0.00 0.00 0.00 4.09
2585 2899 3.605634 TCTTTGGAATGTGTACGGGATG 58.394 45.455 0.00 0.00 0.00 3.51
2586 2900 3.873910 CTCTTTGGAATGTGTACGGGAT 58.126 45.455 0.00 0.00 0.00 3.85
2619 3045 5.169836 AGGTCGAGAACAAAAATTGACAC 57.830 39.130 0.00 0.00 0.00 3.67
2621 3047 5.212934 GGAAGGTCGAGAACAAAAATTGAC 58.787 41.667 0.00 0.00 0.00 3.18
2623 3049 4.219033 CGGAAGGTCGAGAACAAAAATTG 58.781 43.478 0.00 0.00 0.00 2.32
2624 3050 3.304458 GCGGAAGGTCGAGAACAAAAATT 60.304 43.478 0.00 0.00 0.00 1.82
2683 3153 1.165270 ATAAACACAAGCCTGGACGC 58.835 50.000 0.00 0.00 0.00 5.19
2713 3183 3.605692 GCACGAGCAAGATTATAAGCAGC 60.606 47.826 3.17 6.77 41.58 5.25
2715 3185 3.557185 CAGCACGAGCAAGATTATAAGCA 59.443 43.478 7.77 0.00 45.49 3.91
2734 3204 0.253327 AGCCCTTTACTGGTAGCAGC 59.747 55.000 21.58 6.89 0.00 5.25
2746 3216 2.970987 ACAACAACCCATAAGCCCTTT 58.029 42.857 0.00 0.00 0.00 3.11
2751 3221 6.915349 TGTAAACATACAACAACCCATAAGC 58.085 36.000 0.00 0.00 0.00 3.09
2757 3227 6.698329 GGTTTCTTGTAAACATACAACAACCC 59.302 38.462 17.66 6.98 39.47 4.11
2759 3229 8.920509 AAGGTTTCTTGTAAACATACAACAAC 57.079 30.769 3.33 4.61 35.27 3.32
2768 3238 9.683870 TTCCTACTAAAAGGTTTCTTGTAAACA 57.316 29.630 3.33 0.00 37.91 2.83
2790 5119 4.077822 CAAAAGATTGTCCTGCTCTTCCT 58.922 43.478 0.00 0.00 0.00 3.36
2813 5143 4.374399 GACTGTCGAACAAGGGTAGAAAA 58.626 43.478 0.00 0.00 0.00 2.29
2821 5151 0.951040 GGCTGGACTGTCGAACAAGG 60.951 60.000 1.07 0.00 0.00 3.61
2823 5153 0.468226 AAGGCTGGACTGTCGAACAA 59.532 50.000 1.07 0.00 0.00 2.83
2825 5155 1.594331 AAAAGGCTGGACTGTCGAAC 58.406 50.000 1.07 0.00 0.00 3.95
2826 5156 2.341846 AAAAAGGCTGGACTGTCGAA 57.658 45.000 1.07 0.00 0.00 3.71
2858 5189 3.124466 CGATTGATGGTGCTTACGACAAA 59.876 43.478 0.00 0.00 0.00 2.83
2859 5190 2.670905 CGATTGATGGTGCTTACGACAA 59.329 45.455 0.00 0.00 0.00 3.18
2862 5193 2.536365 GACGATTGATGGTGCTTACGA 58.464 47.619 0.00 0.00 0.00 3.43
2873 5204 1.003580 ACACAAGCCTGGACGATTGAT 59.996 47.619 0.00 0.00 0.00 2.57
2909 5250 3.648339 ACGAACAGCATGAGCAAAATT 57.352 38.095 0.00 0.00 45.49 1.82
2910 5251 3.648339 AACGAACAGCATGAGCAAAAT 57.352 38.095 0.00 0.00 45.49 1.82
2911 5252 3.066621 AGAAACGAACAGCATGAGCAAAA 59.933 39.130 0.00 0.00 45.49 2.44
2912 5253 2.618241 AGAAACGAACAGCATGAGCAAA 59.382 40.909 0.00 0.00 45.49 3.68
2913 5254 2.221169 AGAAACGAACAGCATGAGCAA 58.779 42.857 0.00 0.00 45.49 3.91
2919 5260 2.306847 ACCCAAAGAAACGAACAGCAT 58.693 42.857 0.00 0.00 0.00 3.79
2928 5269 2.229062 GCTTCTGCCTACCCAAAGAAAC 59.771 50.000 0.00 0.00 0.00 2.78
2973 5391 2.434702 AGCCTTCGTAATTAGTGGGAGG 59.565 50.000 2.37 2.37 0.00 4.30
2996 5414 3.128764 TGCTGTACTAGTTCATCACGAGG 59.871 47.826 0.00 0.00 32.51 4.63
2997 5415 4.099120 GTGCTGTACTAGTTCATCACGAG 58.901 47.826 17.12 1.41 34.38 4.18
2999 5417 3.833442 TGTGCTGTACTAGTTCATCACG 58.167 45.455 23.01 6.94 34.68 4.35
3003 5421 5.012148 AGGAAACTGTGCTGTACTAGTTCAT 59.988 40.000 0.00 2.48 41.13 2.57
3035 5453 7.242359 TCCATACCTTCCAATTTTCCTTGTAA 58.758 34.615 0.00 0.00 0.00 2.41
3036 5454 6.795590 TCCATACCTTCCAATTTTCCTTGTA 58.204 36.000 0.00 0.00 0.00 2.41
3037 5455 5.650283 TCCATACCTTCCAATTTTCCTTGT 58.350 37.500 0.00 0.00 0.00 3.16
3038 5456 6.796785 ATCCATACCTTCCAATTTTCCTTG 57.203 37.500 0.00 0.00 0.00 3.61
3061 5484 5.097742 TCAGACTGACCTTGTTTTCAGAA 57.902 39.130 0.00 0.00 41.65 3.02
3076 5499 7.805071 GGAAAACATGAAACTGTATTCAGACTG 59.195 37.037 6.32 0.00 42.21 3.51
3077 5500 7.721399 AGGAAAACATGAAACTGTATTCAGACT 59.279 33.333 6.32 0.00 42.21 3.24
3078 5501 7.875971 AGGAAAACATGAAACTGTATTCAGAC 58.124 34.615 6.32 0.00 42.21 3.51
3080 5503 8.352201 TGAAGGAAAACATGAAACTGTATTCAG 58.648 33.333 0.00 0.00 42.21 3.02
3082 5505 8.567948 TCTGAAGGAAAACATGAAACTGTATTC 58.432 33.333 0.00 0.00 0.00 1.75
3083 5506 8.463930 TCTGAAGGAAAACATGAAACTGTATT 57.536 30.769 0.00 0.00 0.00 1.89
3084 5507 8.463930 TTCTGAAGGAAAACATGAAACTGTAT 57.536 30.769 0.00 0.00 0.00 2.29
3085 5508 7.873719 TTCTGAAGGAAAACATGAAACTGTA 57.126 32.000 0.00 0.00 0.00 2.74
3086 5509 6.773976 TTCTGAAGGAAAACATGAAACTGT 57.226 33.333 0.00 0.00 0.00 3.55
3090 5513 8.420222 TGCTAAATTCTGAAGGAAAACATGAAA 58.580 29.630 0.00 0.00 37.49 2.69
3091 5514 7.950512 TGCTAAATTCTGAAGGAAAACATGAA 58.049 30.769 0.00 0.00 37.49 2.57
3092 5515 7.231317 ACTGCTAAATTCTGAAGGAAAACATGA 59.769 33.333 0.00 0.00 37.49 3.07
3093 5516 7.327761 CACTGCTAAATTCTGAAGGAAAACATG 59.672 37.037 0.00 0.00 37.49 3.21
3094 5517 7.373493 CACTGCTAAATTCTGAAGGAAAACAT 58.627 34.615 0.00 0.00 37.49 2.71
3095 5518 6.239008 CCACTGCTAAATTCTGAAGGAAAACA 60.239 38.462 0.00 0.00 37.49 2.83
3096 5519 6.152379 CCACTGCTAAATTCTGAAGGAAAAC 58.848 40.000 0.00 0.00 37.49 2.43
3097 5520 5.833131 ACCACTGCTAAATTCTGAAGGAAAA 59.167 36.000 0.00 0.00 37.49 2.29
3112 5535 1.203063 AGACCACAGAGACCACTGCTA 60.203 52.381 0.00 0.00 41.06 3.49
3121 5544 1.202989 AGACTGCAGAGACCACAGAGA 60.203 52.381 23.35 0.00 35.38 3.10
3122 5545 1.067706 CAGACTGCAGAGACCACAGAG 60.068 57.143 23.35 0.00 35.38 3.35
3123 5546 0.964700 CAGACTGCAGAGACCACAGA 59.035 55.000 23.35 0.00 35.38 3.41
3124 5547 0.964700 TCAGACTGCAGAGACCACAG 59.035 55.000 23.35 1.20 37.45 3.66
3125 5548 1.413118 TTCAGACTGCAGAGACCACA 58.587 50.000 23.35 0.00 0.00 4.17
3126 5549 2.758736 ATTCAGACTGCAGAGACCAC 57.241 50.000 23.35 4.36 0.00 4.16
3127 5550 3.165071 TGTATTCAGACTGCAGAGACCA 58.835 45.455 23.35 8.73 0.00 4.02
3128 5551 3.876274 TGTATTCAGACTGCAGAGACC 57.124 47.619 23.35 6.40 0.00 3.85
3129 5552 4.081972 TCCTTGTATTCAGACTGCAGAGAC 60.082 45.833 23.35 11.25 0.00 3.36
3130 5553 4.089361 TCCTTGTATTCAGACTGCAGAGA 58.911 43.478 23.35 12.32 0.00 3.10
3131 5554 4.462508 TCCTTGTATTCAGACTGCAGAG 57.537 45.455 23.35 9.98 0.00 3.35
3132 5555 4.890158 TTCCTTGTATTCAGACTGCAGA 57.110 40.909 23.35 0.00 0.00 4.26
3133 5556 5.471456 AGTTTTCCTTGTATTCAGACTGCAG 59.529 40.000 13.48 13.48 0.00 4.41
3134 5557 5.239306 CAGTTTTCCTTGTATTCAGACTGCA 59.761 40.000 0.00 0.00 0.00 4.41
3135 5558 5.335191 CCAGTTTTCCTTGTATTCAGACTGC 60.335 44.000 0.00 0.00 32.74 4.40
3136 5559 5.335191 GCCAGTTTTCCTTGTATTCAGACTG 60.335 44.000 0.00 0.00 33.60 3.51
3137 5560 4.762251 GCCAGTTTTCCTTGTATTCAGACT 59.238 41.667 0.00 0.00 0.00 3.24
3138 5561 4.762251 AGCCAGTTTTCCTTGTATTCAGAC 59.238 41.667 0.00 0.00 0.00 3.51
3139 5562 4.761739 CAGCCAGTTTTCCTTGTATTCAGA 59.238 41.667 0.00 0.00 0.00 3.27
3140 5563 4.520492 ACAGCCAGTTTTCCTTGTATTCAG 59.480 41.667 0.00 0.00 0.00 3.02
3141 5564 4.469657 ACAGCCAGTTTTCCTTGTATTCA 58.530 39.130 0.00 0.00 0.00 2.57
3142 5565 5.453567 AACAGCCAGTTTTCCTTGTATTC 57.546 39.130 0.00 0.00 37.03 1.75
3143 5566 5.830991 TGTAACAGCCAGTTTTCCTTGTATT 59.169 36.000 0.00 0.00 41.64 1.89
3144 5567 5.381757 TGTAACAGCCAGTTTTCCTTGTAT 58.618 37.500 0.00 0.00 41.64 2.29
3145 5568 4.783055 TGTAACAGCCAGTTTTCCTTGTA 58.217 39.130 0.00 0.00 41.64 2.41
3146 5569 3.626930 TGTAACAGCCAGTTTTCCTTGT 58.373 40.909 0.00 0.00 41.64 3.16
3147 5570 4.647424 TTGTAACAGCCAGTTTTCCTTG 57.353 40.909 0.00 0.00 41.64 3.61
3148 5571 4.280929 GGATTGTAACAGCCAGTTTTCCTT 59.719 41.667 0.00 0.00 41.64 3.36
3149 5572 3.826729 GGATTGTAACAGCCAGTTTTCCT 59.173 43.478 0.00 0.00 41.64 3.36
3150 5573 3.826729 AGGATTGTAACAGCCAGTTTTCC 59.173 43.478 0.00 1.46 41.64 3.13
3151 5574 6.404734 CCATAGGATTGTAACAGCCAGTTTTC 60.405 42.308 0.00 0.00 41.64 2.29
3152 5575 5.418840 CCATAGGATTGTAACAGCCAGTTTT 59.581 40.000 0.00 0.00 41.64 2.43
3153 5576 4.949856 CCATAGGATTGTAACAGCCAGTTT 59.050 41.667 0.00 0.00 41.64 2.66
3154 5577 4.018415 ACCATAGGATTGTAACAGCCAGTT 60.018 41.667 0.00 0.00 44.27 3.16
3155 5578 3.523564 ACCATAGGATTGTAACAGCCAGT 59.476 43.478 0.00 0.00 0.00 4.00
3156 5579 4.130118 GACCATAGGATTGTAACAGCCAG 58.870 47.826 0.00 0.00 0.00 4.85
3261 5690 8.055790 TCTCAAACCTGATAGAAGATCTAGACA 58.944 37.037 0.00 0.00 31.67 3.41
3263 5692 9.295825 GATCTCAAACCTGATAGAAGATCTAGA 57.704 37.037 0.00 0.00 31.67 2.43
3290 5723 4.141205 TCCATGCATATTGGAACAGGATGA 60.141 41.667 5.01 0.00 42.39 2.92
3303 5738 1.143684 GGTGGTGGAGTCCATGCATAT 59.856 52.381 16.67 0.00 39.81 1.78
3305 5740 1.304282 GGTGGTGGAGTCCATGCAT 59.696 57.895 16.67 0.00 39.81 3.96
3323 5758 2.420568 GGCCTGCACCATCCACATG 61.421 63.158 0.00 0.00 0.00 3.21
3324 5759 2.043652 GGCCTGCACCATCCACAT 60.044 61.111 0.00 0.00 0.00 3.21
3325 5760 3.259314 AGGCCTGCACCATCCACA 61.259 61.111 3.11 0.00 0.00 4.17
3326 5761 2.753043 CAGGCCTGCACCATCCAC 60.753 66.667 22.33 0.00 0.00 4.02
3327 5762 2.537203 TTCAGGCCTGCACCATCCA 61.537 57.895 28.91 4.97 0.00 3.41
3328 5763 2.048603 GTTCAGGCCTGCACCATCC 61.049 63.158 28.91 0.36 0.00 3.51
3329 5764 0.610232 AAGTTCAGGCCTGCACCATC 60.610 55.000 28.88 11.39 0.00 3.51
3330 5765 0.896940 CAAGTTCAGGCCTGCACCAT 60.897 55.000 28.88 17.25 0.00 3.55
3331 5766 1.529010 CAAGTTCAGGCCTGCACCA 60.529 57.895 28.88 9.92 0.00 4.17
3332 5767 1.228245 TCAAGTTCAGGCCTGCACC 60.228 57.895 28.88 17.91 0.00 5.01
3333 5768 0.536006 ACTCAAGTTCAGGCCTGCAC 60.536 55.000 28.91 27.37 0.00 4.57
3334 5769 0.250467 GACTCAAGTTCAGGCCTGCA 60.250 55.000 28.91 15.88 0.00 4.41
3335 5770 0.036022 AGACTCAAGTTCAGGCCTGC 59.964 55.000 28.91 15.23 0.00 4.85
3336 5771 1.622811 AGAGACTCAAGTTCAGGCCTG 59.377 52.381 27.87 27.87 0.00 4.85
3337 5772 1.622811 CAGAGACTCAAGTTCAGGCCT 59.377 52.381 0.00 0.00 0.00 5.19
3338 5773 1.338579 CCAGAGACTCAAGTTCAGGCC 60.339 57.143 5.02 0.00 0.00 5.19
3339 5774 1.620819 TCCAGAGACTCAAGTTCAGGC 59.379 52.381 5.02 0.00 0.00 4.85
3340 5775 3.118811 GGATCCAGAGACTCAAGTTCAGG 60.119 52.174 6.95 0.00 0.00 3.86
3341 5776 3.513119 TGGATCCAGAGACTCAAGTTCAG 59.487 47.826 11.44 0.00 0.00 3.02
3342 5777 3.510459 TGGATCCAGAGACTCAAGTTCA 58.490 45.455 11.44 0.00 0.00 3.18
3343 5778 3.118811 CCTGGATCCAGAGACTCAAGTTC 60.119 52.174 38.37 0.39 46.30 3.01
3344 5779 2.836981 CCTGGATCCAGAGACTCAAGTT 59.163 50.000 38.37 0.00 46.30 2.66
3345 5780 2.465813 CCTGGATCCAGAGACTCAAGT 58.534 52.381 38.37 0.00 46.30 3.16
3346 5781 1.138661 GCCTGGATCCAGAGACTCAAG 59.861 57.143 38.37 21.64 46.30 3.02
3347 5782 1.198713 GCCTGGATCCAGAGACTCAA 58.801 55.000 38.37 2.70 46.30 3.02
3348 5783 0.337773 AGCCTGGATCCAGAGACTCA 59.662 55.000 38.37 3.49 46.30 3.41
3349 5784 0.752054 CAGCCTGGATCCAGAGACTC 59.248 60.000 38.37 21.69 46.30 3.36
3350 5785 1.336632 GCAGCCTGGATCCAGAGACT 61.337 60.000 38.37 28.27 46.30 3.24
3351 5786 1.145819 GCAGCCTGGATCCAGAGAC 59.854 63.158 38.37 26.73 46.30 3.36
3352 5787 2.068821 GGCAGCCTGGATCCAGAGA 61.069 63.158 38.37 6.31 46.30 3.10
3353 5788 2.509916 GGCAGCCTGGATCCAGAG 59.490 66.667 38.37 28.36 46.30 3.35
3354 5789 3.092511 GGGCAGCCTGGATCCAGA 61.093 66.667 38.37 7.53 46.30 3.86
3355 5790 4.201122 GGGGCAGCCTGGATCCAG 62.201 72.222 31.69 31.69 43.26 3.86
3357 5792 4.512914 GTGGGGCAGCCTGGATCC 62.513 72.222 12.43 4.20 0.00 3.36
3358 5793 3.731728 TGTGGGGCAGCCTGGATC 61.732 66.667 12.43 0.00 0.00 3.36
3359 5794 4.052518 GTGTGGGGCAGCCTGGAT 62.053 66.667 12.43 0.00 0.00 3.41
3361 5796 4.729918 GAGTGTGGGGCAGCCTGG 62.730 72.222 12.43 0.00 0.00 4.45
3362 5797 4.729918 GGAGTGTGGGGCAGCCTG 62.730 72.222 12.43 0.00 0.00 4.85
3370 5805 2.734948 TTAAACGGGCGGAGTGTGGG 62.735 60.000 0.00 0.00 0.00 4.61
3371 5806 0.675522 ATTAAACGGGCGGAGTGTGG 60.676 55.000 0.00 0.00 0.00 4.17
3372 5807 2.012937 TATTAAACGGGCGGAGTGTG 57.987 50.000 0.00 0.00 0.00 3.82
3373 5808 2.433239 AGATATTAAACGGGCGGAGTGT 59.567 45.455 0.00 0.00 0.00 3.55
3374 5809 3.107642 AGATATTAAACGGGCGGAGTG 57.892 47.619 0.00 0.00 0.00 3.51
3375 5810 3.832615 AAGATATTAAACGGGCGGAGT 57.167 42.857 0.00 0.00 0.00 3.85
3376 5811 6.796705 AATAAAGATATTAAACGGGCGGAG 57.203 37.500 0.00 0.00 29.85 4.63
3377 5812 8.851541 AATAATAAAGATATTAAACGGGCGGA 57.148 30.769 0.00 0.00 37.49 5.54
3378 5813 8.179615 GGAATAATAAAGATATTAAACGGGCGG 58.820 37.037 0.00 0.00 37.49 6.13
3379 5814 8.723311 TGGAATAATAAAGATATTAAACGGGCG 58.277 33.333 0.00 0.00 37.49 6.13
3442 5877 3.826729 CTCAACCCCGGAGAAAAGAATTT 59.173 43.478 0.73 0.00 42.41 1.82
3443 5878 3.181433 ACTCAACCCCGGAGAAAAGAATT 60.181 43.478 0.73 0.00 36.26 2.17
3444 5879 2.375509 ACTCAACCCCGGAGAAAAGAAT 59.624 45.455 0.73 0.00 36.26 2.40
3445 5880 1.772453 ACTCAACCCCGGAGAAAAGAA 59.228 47.619 0.73 0.00 36.26 2.52
3446 5881 1.430992 ACTCAACCCCGGAGAAAAGA 58.569 50.000 0.73 0.00 36.26 2.52
3447 5882 2.935676 GCTACTCAACCCCGGAGAAAAG 60.936 54.545 0.73 0.00 36.26 2.27
3448 5883 1.002773 GCTACTCAACCCCGGAGAAAA 59.997 52.381 0.73 0.00 36.26 2.29
3449 5884 0.611714 GCTACTCAACCCCGGAGAAA 59.388 55.000 0.73 0.00 36.26 2.52
3450 5885 2.283824 GCTACTCAACCCCGGAGAA 58.716 57.895 0.73 0.00 36.26 2.87
3451 5886 4.029472 GCTACTCAACCCCGGAGA 57.971 61.111 0.73 0.00 36.26 3.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.