Multiple sequence alignment - TraesCS2B01G515000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G515000 chr2B 100.000 3617 0 0 1 3617 709990901 709994517 0.000000e+00 6680.0
1 TraesCS2B01G515000 chr2B 87.658 948 110 4 1619 2561 678388393 678387448 0.000000e+00 1096.0
2 TraesCS2B01G515000 chr2B 84.426 732 92 12 858 1569 678389199 678388470 0.000000e+00 701.0
3 TraesCS2B01G515000 chr2D 95.945 2811 105 4 1 2807 587355941 587358746 0.000000e+00 4551.0
4 TraesCS2B01G515000 chr2D 90.580 1327 71 23 2333 3617 587364968 587366282 0.000000e+00 1709.0
5 TraesCS2B01G515000 chr2D 87.526 962 120 0 1619 2580 565941440 565940479 0.000000e+00 1112.0
6 TraesCS2B01G515000 chr2D 85.646 836 101 9 2799 3617 24222584 24223417 0.000000e+00 861.0
7 TraesCS2B01G515000 chr2D 84.375 672 85 10 858 1510 565942139 565941469 3.040000e-180 641.0
8 TraesCS2B01G515000 chr2D 78.365 416 58 21 2201 2589 596379361 596378951 1.300000e-59 241.0
9 TraesCS2B01G515000 chr2D 95.413 109 4 1 1 108 313293775 313293883 4.800000e-39 172.0
10 TraesCS2B01G515000 chr2D 91.525 118 9 1 1 118 388050069 388050185 1.040000e-35 161.0
11 TraesCS2B01G515000 chr2D 97.619 84 2 0 2799 2882 587358768 587358851 1.050000e-30 145.0
12 TraesCS2B01G515000 chr5A 81.373 1471 210 34 1133 2580 561178508 561177079 0.000000e+00 1140.0
13 TraesCS2B01G515000 chr5A 80.757 977 147 23 1633 2589 493031450 493030495 0.000000e+00 725.0
14 TraesCS2B01G515000 chr1D 87.440 836 84 13 2799 3617 408409138 408409969 0.000000e+00 942.0
15 TraesCS2B01G515000 chr4D 86.635 838 87 17 2799 3617 426789460 426788629 0.000000e+00 904.0
16 TraesCS2B01G515000 chr4D 92.174 115 9 0 1 115 222029730 222029844 2.890000e-36 163.0
17 TraesCS2B01G515000 chr5B 86.158 838 91 17 2800 3617 688584032 688583200 0.000000e+00 881.0
18 TraesCS2B01G515000 chr5B 85.854 820 95 15 2814 3617 664249105 664249919 0.000000e+00 852.0
19 TraesCS2B01G515000 chr5B 84.375 64 8 2 3085 3148 590361565 590361504 1.080000e-05 62.1
20 TraesCS2B01G515000 chr5D 82.472 987 143 17 1621 2589 389780515 389779541 0.000000e+00 837.0
21 TraesCS2B01G515000 chr5D 81.858 678 111 10 1628 2302 444318055 444317387 8.770000e-156 560.0
22 TraesCS2B01G515000 chr5D 84.638 345 43 9 3277 3617 41826752 41827090 5.790000e-88 335.0
23 TraesCS2B01G515000 chr5D 84.043 282 29 8 281 548 57174195 57174474 1.290000e-64 257.0
24 TraesCS2B01G515000 chr5D 82.168 286 48 2 1284 1569 444318366 444318084 3.610000e-60 243.0
25 TraesCS2B01G515000 chr5D 93.860 114 7 0 1 114 560041536 560041423 4.800000e-39 172.0
26 TraesCS2B01G515000 chr5D 84.615 65 8 2 3084 3148 382057426 382057364 3.020000e-06 63.9
27 TraesCS2B01G515000 chr3B 84.841 818 109 9 2813 3617 136101178 136101993 0.000000e+00 809.0
28 TraesCS2B01G515000 chr2A 88.160 625 71 2 1623 2244 706210096 706209472 0.000000e+00 741.0
29 TraesCS2B01G515000 chr2A 84.877 734 88 11 858 1569 706210915 706210183 0.000000e+00 719.0
30 TraesCS2B01G515000 chr2A 85.862 290 27 6 281 556 666053529 666053240 2.730000e-76 296.0
31 TraesCS2B01G515000 chr2A 81.570 293 34 12 281 556 546344202 546343913 1.310000e-54 224.0
32 TraesCS2B01G515000 chr7B 74.110 1348 274 51 1134 2442 575388035 575386724 1.510000e-133 486.0
33 TraesCS2B01G515000 chr7B 77.232 448 83 9 1136 1569 577142847 577142405 1.000000e-60 244.0
34 TraesCS2B01G515000 chr7B 85.938 64 7 2 3084 3147 633644829 633644768 2.330000e-07 67.6
35 TraesCS2B01G515000 chr7B 84.211 57 7 2 564 619 557437142 557437087 2.000000e-03 54.7
36 TraesCS2B01G515000 chr7A 73.258 1335 303 38 1134 2442 615376097 615374791 4.290000e-119 438.0
37 TraesCS2B01G515000 chr7A 93.750 112 5 2 1 110 66869394 66869283 2.230000e-37 167.0
38 TraesCS2B01G515000 chr7A 81.221 213 23 10 3090 3285 637080257 637080045 4.840000e-34 156.0
39 TraesCS2B01G515000 chr3A 83.918 342 52 3 3277 3617 696208594 696208933 1.250000e-84 324.0
40 TraesCS2B01G515000 chr3A 83.529 340 51 4 3279 3617 635183862 635183527 2.710000e-81 313.0
41 TraesCS2B01G515000 chr3A 91.525 118 8 2 1 118 44118260 44118375 1.040000e-35 161.0
42 TraesCS2B01G515000 chr1B 83.626 342 53 3 3277 3617 262582831 262582492 5.830000e-83 318.0
43 TraesCS2B01G515000 chr6B 79.887 353 53 11 281 617 592978459 592978809 3.610000e-60 243.0
44 TraesCS2B01G515000 chr6B 87.719 57 5 2 565 620 416921086 416921141 8.380000e-07 65.8
45 TraesCS2B01G515000 chr6D 94.495 109 6 0 1 109 262307722 262307614 6.210000e-38 169.0
46 TraesCS2B01G515000 chr6A 90.833 120 10 1 1 120 486014704 486014586 3.740000e-35 159.0
47 TraesCS2B01G515000 chr7D 80.571 175 22 6 3123 3285 584272695 584272869 1.360000e-24 124.0
48 TraesCS2B01G515000 chr7D 82.090 67 10 2 552 617 617507386 617507451 5.050000e-04 56.5
49 TraesCS2B01G515000 chr3D 80.114 176 20 10 3123 3285 288667665 288667492 2.280000e-22 117.0
50 TraesCS2B01G515000 chr1A 86.207 58 6 2 564 620 42195669 42195725 1.080000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G515000 chr2B 709990901 709994517 3616 False 6680.0 6680 100.0000 1 3617 1 chr2B.!!$F1 3616
1 TraesCS2B01G515000 chr2B 678387448 678389199 1751 True 898.5 1096 86.0420 858 2561 2 chr2B.!!$R1 1703
2 TraesCS2B01G515000 chr2D 587355941 587358851 2910 False 2348.0 4551 96.7820 1 2882 2 chr2D.!!$F5 2881
3 TraesCS2B01G515000 chr2D 587364968 587366282 1314 False 1709.0 1709 90.5800 2333 3617 1 chr2D.!!$F4 1284
4 TraesCS2B01G515000 chr2D 565940479 565942139 1660 True 876.5 1112 85.9505 858 2580 2 chr2D.!!$R2 1722
5 TraesCS2B01G515000 chr2D 24222584 24223417 833 False 861.0 861 85.6460 2799 3617 1 chr2D.!!$F1 818
6 TraesCS2B01G515000 chr5A 561177079 561178508 1429 True 1140.0 1140 81.3730 1133 2580 1 chr5A.!!$R2 1447
7 TraesCS2B01G515000 chr5A 493030495 493031450 955 True 725.0 725 80.7570 1633 2589 1 chr5A.!!$R1 956
8 TraesCS2B01G515000 chr1D 408409138 408409969 831 False 942.0 942 87.4400 2799 3617 1 chr1D.!!$F1 818
9 TraesCS2B01G515000 chr4D 426788629 426789460 831 True 904.0 904 86.6350 2799 3617 1 chr4D.!!$R1 818
10 TraesCS2B01G515000 chr5B 688583200 688584032 832 True 881.0 881 86.1580 2800 3617 1 chr5B.!!$R2 817
11 TraesCS2B01G515000 chr5B 664249105 664249919 814 False 852.0 852 85.8540 2814 3617 1 chr5B.!!$F1 803
12 TraesCS2B01G515000 chr5D 389779541 389780515 974 True 837.0 837 82.4720 1621 2589 1 chr5D.!!$R2 968
13 TraesCS2B01G515000 chr5D 444317387 444318366 979 True 401.5 560 82.0130 1284 2302 2 chr5D.!!$R4 1018
14 TraesCS2B01G515000 chr3B 136101178 136101993 815 False 809.0 809 84.8410 2813 3617 1 chr3B.!!$F1 804
15 TraesCS2B01G515000 chr2A 706209472 706210915 1443 True 730.0 741 86.5185 858 2244 2 chr2A.!!$R3 1386
16 TraesCS2B01G515000 chr7B 575386724 575388035 1311 True 486.0 486 74.1100 1134 2442 1 chr7B.!!$R2 1308
17 TraesCS2B01G515000 chr7A 615374791 615376097 1306 True 438.0 438 73.2580 1134 2442 1 chr7A.!!$R2 1308

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
787 791 0.111061 TATAACCTCGGGCGGCTCTA 59.889 55.0 9.56 0.0 0.0 2.43 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2730 2842 1.519408 ACCAATACAAGTCCGCACAC 58.481 50.0 0.0 0.0 0.0 3.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 3.070018 ACTTGTCATTTCCTTCTGCTCG 58.930 45.455 0.00 0.00 0.00 5.03
39 40 1.002366 CATTTCCTTCTGCTCGTCGG 58.998 55.000 0.00 0.00 0.00 4.79
48 49 4.047059 GCTCGTCGGTGGGTTCGA 62.047 66.667 0.00 0.00 0.00 3.71
62 63 5.100943 GTGGGTTCGACACTCTTACTTATC 58.899 45.833 0.00 0.00 35.98 1.75
88 89 7.362660 CGAAAGGACTACGATTGATCCCATATA 60.363 40.741 0.00 0.00 30.99 0.86
92 93 7.122948 AGGACTACGATTGATCCCATATACTTC 59.877 40.741 0.00 0.00 30.99 3.01
154 155 8.610248 TCACAAATAGGTCAAAACTAAATCGA 57.390 30.769 0.00 0.00 0.00 3.59
165 166 9.113876 GTCAAAACTAAATCGAAACTAATGGTG 57.886 33.333 0.00 0.00 0.00 4.17
190 191 2.739784 CCCCATCTGCTCCTAGCG 59.260 66.667 0.00 0.00 46.26 4.26
191 192 2.136878 CCCCATCTGCTCCTAGCGT 61.137 63.158 0.00 0.00 46.26 5.07
193 194 0.531532 CCCATCTGCTCCTAGCGTTG 60.532 60.000 0.00 0.00 46.26 4.10
196 197 0.687757 ATCTGCTCCTAGCGTTGGGA 60.688 55.000 3.93 3.93 46.26 4.37
197 198 1.153549 CTGCTCCTAGCGTTGGGAC 60.154 63.158 0.00 0.00 46.26 4.46
204 206 1.229082 TAGCGTTGGGACCAGGACT 60.229 57.895 0.00 0.00 0.00 3.85
214 216 2.224066 GGGACCAGGACTAATGATCACG 60.224 54.545 0.00 0.00 0.00 4.35
226 228 0.612732 TGATCACGTTAGTCCCGGGT 60.613 55.000 22.86 4.16 0.00 5.28
252 254 1.831736 CCAGGTCGGGACTAATGTTCT 59.168 52.381 0.00 0.00 0.00 3.01
253 255 2.418746 CCAGGTCGGGACTAATGTTCTG 60.419 54.545 0.00 0.00 0.00 3.02
312 316 2.182030 CCGACTTGAGGACTCCGC 59.818 66.667 0.00 0.00 0.00 5.54
314 318 2.636412 CGACTTGAGGACTCCGCCA 61.636 63.158 0.00 0.00 0.00 5.69
315 319 1.079750 GACTTGAGGACTCCGCCAC 60.080 63.158 0.00 0.00 0.00 5.01
379 383 4.506838 GACGAAGACGAAGATGAAATGG 57.493 45.455 0.00 0.00 42.66 3.16
382 386 3.553511 CGAAGACGAAGATGAAATGGGAG 59.446 47.826 0.00 0.00 42.66 4.30
406 410 2.165301 CACCGACGCGAGGGATTTC 61.165 63.158 23.12 4.02 0.00 2.17
424 428 1.153353 TCAGGCACCGATTTCGAAAC 58.847 50.000 13.81 6.57 43.02 2.78
502 506 0.397564 ATAAAACCACCCACGACCGT 59.602 50.000 0.00 0.00 0.00 4.83
622 626 9.399403 GTGCACTTTTTAGATTTTAGGAAAGAG 57.601 33.333 10.32 0.00 0.00 2.85
651 655 9.959721 AATAGTAATAGCCATAACAATACCCTG 57.040 33.333 0.00 0.00 0.00 4.45
766 770 7.806690 TCACAAAATTAGAGGATTCTGTTTCG 58.193 34.615 0.00 0.00 34.79 3.46
787 791 0.111061 TATAACCTCGGGCGGCTCTA 59.889 55.000 9.56 0.00 0.00 2.43
818 822 6.634805 ACATACATCTTATAAGCGATCCAGG 58.365 40.000 7.67 0.00 0.00 4.45
819 823 4.543590 ACATCTTATAAGCGATCCAGGG 57.456 45.455 7.67 0.00 0.00 4.45
884 891 1.066573 CATGTCGAGCAGGAAGGTTCT 60.067 52.381 0.00 0.00 0.00 3.01
1059 1075 1.905512 GACTCCATACGCCCAGGTT 59.094 57.895 0.00 0.00 0.00 3.50
1076 1092 1.957186 TTGCCGTGTACCAAGACGC 60.957 57.895 0.00 0.00 40.82 5.19
1158 1183 1.524355 CTCAAGACGCACTGTGAGTTG 59.476 52.381 18.02 13.20 33.45 3.16
1588 1625 2.427245 TGTACGCGGACACGTTCG 60.427 61.111 22.88 0.00 45.75 3.95
1655 1737 2.175184 CTCGTGCCGCCTTTGTTCAG 62.175 60.000 0.00 0.00 0.00 3.02
2230 2321 2.973899 CACAGGTAGCCGCTGAGT 59.026 61.111 2.16 0.00 0.00 3.41
2639 2751 3.394674 TGCAGTACGAGATGGTGAAAA 57.605 42.857 0.00 0.00 0.00 2.29
2676 2788 4.867047 TGTCGCTCTCTCTTTGAATGATTC 59.133 41.667 0.00 0.00 0.00 2.52
2760 2873 2.816083 TATTGGTTGACGCCGGCG 60.816 61.111 44.88 44.88 46.03 6.46
2853 3001 1.224592 CTGGCCGTTATCCCAGCTT 59.775 57.895 0.00 0.00 41.86 3.74
2906 3054 3.713764 GGATCCCTTCTCTGATCTTTGGA 59.286 47.826 0.00 0.00 37.96 3.53
2913 3061 0.620556 TCTGATCTTTGGACCTGGGC 59.379 55.000 0.00 0.00 0.00 5.36
3060 3208 1.503818 GGCGAGTTTGGAGCGACAAA 61.504 55.000 4.99 4.99 37.96 2.83
3130 3280 1.291272 GTCCCTTGGCGTCGTTACT 59.709 57.895 0.00 0.00 0.00 2.24
3131 3281 1.012486 GTCCCTTGGCGTCGTTACTG 61.012 60.000 0.00 0.00 0.00 2.74
3152 3302 3.262420 GTGTTGAAGGCATCGTCATAGT 58.738 45.455 0.00 0.00 31.86 2.12
3191 3341 3.330720 CCTGCTCCGGGGGAAACT 61.331 66.667 1.90 0.00 0.00 2.66
3208 3358 4.691216 GGAAACTCCAGATATGTTATCGGC 59.309 45.833 0.00 0.00 36.28 5.54
3209 3359 3.963428 ACTCCAGATATGTTATCGGCC 57.037 47.619 0.00 0.00 0.00 6.13
3210 3360 3.511477 ACTCCAGATATGTTATCGGCCT 58.489 45.455 0.00 0.00 0.00 5.19
3212 3362 2.028112 TCCAGATATGTTATCGGCCTGC 60.028 50.000 0.00 0.00 0.00 4.85
3213 3363 2.027745 CCAGATATGTTATCGGCCTGCT 60.028 50.000 0.00 0.00 0.00 4.24
3329 3491 3.945434 GCGGATCTCGACGGCGTA 61.945 66.667 14.74 0.00 42.43 4.42
3331 3493 2.532256 CGGATCTCGACGGCGTAGT 61.532 63.158 14.74 0.00 42.43 2.73
3334 3496 2.049475 GATCTCGACGGCGTAGTGCT 62.049 60.000 14.74 5.23 45.43 4.40
3415 3578 3.366915 TCGTGGTGGCGTCGATGA 61.367 61.111 9.31 0.00 0.00 2.92
3444 3607 0.532573 ATGACAAGGTCGATGCGTCT 59.467 50.000 4.05 0.00 34.95 4.18
3475 3638 3.323115 TCTGAAGATGGATCGATGGAAGG 59.677 47.826 0.54 0.00 0.00 3.46
3546 3713 2.194597 GGACTGTGTGTGCCCCAA 59.805 61.111 0.00 0.00 0.00 4.12
3549 3716 0.250901 GACTGTGTGTGCCCCAATCT 60.251 55.000 0.00 0.00 0.00 2.40
3569 3736 2.969821 AGGTATTGTGGCTTGGTTGA 57.030 45.000 0.00 0.00 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 3.382048 AAGTAAGAGTGTCGAACCCAC 57.618 47.619 0.00 0.00 0.00 4.61
48 49 6.837471 AGTCCTTTCGATAAGTAAGAGTGT 57.163 37.500 0.00 0.00 29.89 3.55
62 63 3.181479 TGGGATCAATCGTAGTCCTTTCG 60.181 47.826 0.00 0.00 0.00 3.46
88 89 0.320771 GCACGTGATGACCCAGAAGT 60.321 55.000 22.23 0.00 0.00 3.01
92 93 2.034879 GTGGCACGTGATGACCCAG 61.035 63.158 22.23 0.00 34.05 4.45
154 155 1.530323 GGCACGACCACCATTAGTTT 58.470 50.000 0.00 0.00 38.86 2.66
177 178 0.687757 TCCCAACGCTAGGAGCAGAT 60.688 55.000 0.00 0.00 42.58 2.90
190 191 3.199946 TGATCATTAGTCCTGGTCCCAAC 59.800 47.826 0.00 0.00 0.00 3.77
191 192 3.199946 GTGATCATTAGTCCTGGTCCCAA 59.800 47.826 0.00 0.00 0.00 4.12
193 194 2.224066 CGTGATCATTAGTCCTGGTCCC 60.224 54.545 0.00 0.00 0.00 4.46
196 197 4.710375 ACTAACGTGATCATTAGTCCTGGT 59.290 41.667 13.62 1.62 37.07 4.00
197 198 5.263968 ACTAACGTGATCATTAGTCCTGG 57.736 43.478 13.62 0.00 37.07 4.45
204 206 2.363038 CCCGGGACTAACGTGATCATTA 59.637 50.000 18.48 0.00 0.00 1.90
214 216 0.321919 GGTTTGGACCCGGGACTAAC 60.322 60.000 32.02 27.91 40.25 2.34
226 228 0.178926 TAGTCCCGACCTGGTTTGGA 60.179 55.000 17.75 15.22 35.15 3.53
237 239 1.475280 CGTCCAGAACATTAGTCCCGA 59.525 52.381 0.00 0.00 0.00 5.14
312 316 2.343758 CGATATGGGGAGGCGTGG 59.656 66.667 0.00 0.00 0.00 4.94
314 318 3.991051 CGCGATATGGGGAGGCGT 61.991 66.667 0.00 0.00 41.75 5.68
324 328 2.590575 CCAAACGGGCCGCGATAT 60.591 61.111 28.71 2.03 0.00 1.63
331 335 2.359975 CTCTCCACCAAACGGGCC 60.360 66.667 0.00 0.00 42.05 5.80
379 383 4.500116 GCGTCGGTGCTCTCCTCC 62.500 72.222 0.00 0.00 0.00 4.30
382 386 4.838486 CTCGCGTCGGTGCTCTCC 62.838 72.222 5.77 0.00 0.00 3.71
406 410 0.871722 TGTTTCGAAATCGGTGCCTG 59.128 50.000 14.69 0.00 40.29 4.85
424 428 4.653888 GGGGGTCGTGGGTGGTTG 62.654 72.222 0.00 0.00 0.00 3.77
462 466 4.227134 CATCCGGGCGTGAGGAGG 62.227 72.222 0.00 0.00 40.26 4.30
550 554 2.505118 GGCTCTCGACTGCACGAC 60.505 66.667 7.13 0.00 37.37 4.34
575 579 1.460267 GCGCATTTATCGGACGAATCG 60.460 52.381 0.30 0.00 0.00 3.34
578 582 0.802994 ACGCGCATTTATCGGACGAA 60.803 50.000 5.73 0.00 0.00 3.85
627 631 8.730093 TCAGGGTATTGTTATGGCTATTACTA 57.270 34.615 0.88 0.00 0.00 1.82
766 770 2.030113 GCCGCCCGAGGTTATACC 59.970 66.667 0.00 0.00 38.99 2.73
787 791 5.470098 CGCTTATAAGATGTATGTTTGGGCT 59.530 40.000 16.85 0.00 0.00 5.19
819 823 0.822164 TTGCTAGCTAGGGTTCGTCC 59.178 55.000 22.10 3.52 0.00 4.79
926 936 1.792949 GCTTGTCGTCTTGGTACACAG 59.207 52.381 0.00 0.00 39.29 3.66
1059 1075 2.356553 GCGTCTTGGTACACGGCA 60.357 61.111 5.72 0.00 39.29 5.69
1076 1092 2.802667 CGATGCTTCAACGGCTCGG 61.803 63.158 0.08 0.00 31.81 4.63
1588 1625 2.037251 TCTTTATGATGCCTAGCGGGAC 59.963 50.000 2.95 0.00 37.23 4.46
2608 2720 3.616821 TCTCGTACTGCATGTTATTGTGC 59.383 43.478 0.00 0.00 41.61 4.57
2617 2729 2.584492 TCACCATCTCGTACTGCATG 57.416 50.000 0.00 0.00 0.00 4.06
2639 2751 1.734388 GCGACAAACAACCCTGCCTT 61.734 55.000 0.00 0.00 0.00 4.35
2730 2842 1.519408 ACCAATACAAGTCCGCACAC 58.481 50.000 0.00 0.00 0.00 3.82
3130 3280 2.183478 ATGACGATGCCTTCAACACA 57.817 45.000 0.00 0.00 0.00 3.72
3131 3281 3.262420 ACTATGACGATGCCTTCAACAC 58.738 45.455 0.00 0.00 0.00 3.32
3152 3302 0.524816 GAAAGGAGCGACGCGACATA 60.525 55.000 15.93 0.00 0.00 2.29
3191 3341 2.028112 GCAGGCCGATAACATATCTGGA 60.028 50.000 0.00 0.00 0.00 3.86
3193 3343 3.257393 GAGCAGGCCGATAACATATCTG 58.743 50.000 0.00 0.00 0.00 2.90
3198 3348 0.394565 GAGGAGCAGGCCGATAACAT 59.605 55.000 0.00 0.00 0.00 2.71
3329 3491 1.531840 ACCGAGTCTCCACAGCACT 60.532 57.895 0.00 0.00 0.00 4.40
3331 3493 1.806461 GACACCGAGTCTCCACAGCA 61.806 60.000 0.00 0.00 44.09 4.41
3334 3496 3.773370 GGACACCGAGTCTCCACA 58.227 61.111 7.70 0.00 46.72 4.17
3381 3544 2.354305 ACGTCAGACAACGCCGTC 60.354 61.111 0.41 0.00 46.40 4.79
3415 3578 2.676176 CGACCTTGTCATGCATCTCTGT 60.676 50.000 0.00 0.00 32.09 3.41
3444 3607 4.022503 CGATCCATCTTCAGAGCAGATACA 60.023 45.833 0.00 0.00 29.36 2.29
3514 3681 3.303135 TCCGGCGCACTCTCAGTT 61.303 61.111 10.83 0.00 0.00 3.16
3546 3713 4.227300 TCAACCAAGCCACAATACCTAGAT 59.773 41.667 0.00 0.00 0.00 1.98
3549 3716 3.585289 TCTCAACCAAGCCACAATACCTA 59.415 43.478 0.00 0.00 0.00 3.08


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.