AutoCloner

Multiple sequence alignment - TraesCS2B01G514600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS2B01G514600	chr2B	100.000	2795	0	0	1	2795	709488332	709485538	0.000000e+00	5162
1	TraesCS2B01G514600	chr2B	81.877	2025	291	50	828	2792	89494892	89496900	0.000000e+00	1637
2	TraesCS2B01G514600	chr2B	86.667	840	90	10	1	830	12858045	12857218	0.000000e+00	911
3	TraesCS2B01G514600	chr2B	83.315	923	144	7	828	1748	89500222	89501136	0.000000e+00	843
4	TraesCS2B01G514600	chr2B	85.714	434	55	3	1580	2006	709454768	709454335	4.250000e-123	451
5	TraesCS2B01G514600	chr2B	94.819	193	9	1	637	829	709514573	709514382	1.630000e-77	300
6	TraesCS2B01G514600	chr2B	91.795	195	13	2	637	829	12862259	12862066	4.590000e-68	268
7	TraesCS2B01G514600	chr2B	90.769	195	15	2	637	829	11722522	11722329	9.930000e-65	257
8	TraesCS2B01G514600	chr6D	87.903	1984	215	16	828	2795	8578659	8576685	0.000000e+00	2311
9	TraesCS2B01G514600	chr6D	79.185	908	170	13	828	1730	33895309	33896202	1.840000e-171	612
10	TraesCS2B01G514600	chr6D	85.526	456	47	13	2217	2656	34019364	34019816	2.540000e-125	459
11	TraesCS2B01G514600	chr6D	80.442	588	87	20	2230	2792	8817617	8818201	9.250000e-115	424
12	TraesCS2B01G514600	chr6D	79.114	474	93	6	1	473	46447283	46446815	3.470000e-84	322
13	TraesCS2B01G514600	chr6D	89.167	120	13	0	2104	2223	34019219	34019338	1.730000e-32	150
14	TraesCS2B01G514600	chr6D	81.203	133	23	2	822	953	9057141	9057272	3.810000e-19	106
15	TraesCS2B01G514600	chr6B	82.095	1871	276	34	828	2656	15249237	15247384	0.000000e+00	1544
16	TraesCS2B01G514600	chr6B	80.720	1416	235	22	828	2223	670601917	670600520	0.000000e+00	1068
17	TraesCS2B01G514600	chr6B	83.937	1021	143	14	1007	2017	16255700	16256709	0.000000e+00	957
18	TraesCS2B01G514600	chr6B	85.291	877	119	9	828	1699	16320846	16321717	0.000000e+00	896
19	TraesCS2B01G514600	chr6B	81.859	882	121	19	1356	2223	53075837	53074981	0.000000e+00	706
20	TraesCS2B01G514600	chr6B	81.510	768	118	13	1241	2005	15298849	15298103	6.620000e-171	610
21	TraesCS2B01G514600	chr6B	87.140	451	45	7	2219	2656	53074954	53074504	1.490000e-137	499
22	TraesCS2B01G514600	chr6B	86.792	106	12	2	2688	2792	53060601	53060497	1.760000e-22	117
23	TraesCS2B01G514600	chr7D	88.164	828	83	4	3	828	47827171	47827985	0.000000e+00	972
24	TraesCS2B01G514600	chr7D	91.282	195	14	2	637	829	47822836	47823029	2.130000e-66	263
25	TraesCS2B01G514600	chr1D	87.726	831	83	4	3	831	478937795	478938608	0.000000e+00	952
26	TraesCS2B01G514600	chr7A	86.699	827	103	5	3	827	154371935	154372756	0.000000e+00	911
27	TraesCS2B01G514600	chr7A	89.744	195	17	2	637	829	154367754	154367947	2.150000e-61	246
28	TraesCS2B01G514600	chr5D	78.895	1412	237	36	835	2224	42073873	42075245	0.000000e+00	900
29	TraesCS2B01G514600	chr5D	85.321	327	30	8	2219	2536	499860702	499860385	3.470000e-84	322
30	TraesCS2B01G514600	chrUn	78.577	1349	254	24	834	2158	65790492	65789155	0.000000e+00	857
31	TraesCS2B01G514600	chr6A	78.605	1075	192	24	825	1887	9364867	9365915	0.000000e+00	676
32	TraesCS2B01G514600	chr6A	90.704	355	25	5	1877	2224	9366103	9366456	1.520000e-127	466
33	TraesCS2B01G514600	chr6A	82.721	544	61	20	2275	2789	9366471	9367010	1.180000e-123	453
34	TraesCS2B01G514600	chr6A	79.801	604	68	30	2225	2790	35567388	35566801	9.390000e-105	390
35	TraesCS2B01G514600	chr3B	79.454	915	161	20	828	1733	778342628	778341732	8.500000e-175	623
36	TraesCS2B01G514600	chr3D	80.511	744	126	11	828	1566	582880119	582880848	1.130000e-153	553
37	TraesCS2B01G514600	chr2D	85.682	447	48	3	384	828	62967659	62967227	9.120000e-125	457
38	TraesCS2B01G514600	chr2D	92.075	265	21	0	3	267	62968300	62968036	9.450000e-100	374
39	TraesCS2B01G514600	chr2D	90.816	196	15	2	636	829	62972480	62972286	2.760000e-65	259
40	TraesCS2B01G514600	chr5B	86.306	314	31	6	2230	2536	621234083	621233775	5.770000e-87	331
41	TraesCS2B01G514600	chr5A	84.848	330	32	8	2219	2536	624201358	624201035	1.620000e-82	316

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS2B01G514600	chr2B	709485538	709488332	2794	True	5162.000000	5162	100.000000	1	2795	1	chr2B.!!$R5	2794
1	TraesCS2B01G514600	chr2B	89494892	89501136	6244	False	1240.000000	1637	82.596000	828	2792	2	chr2B.!!$F1	1964
2	TraesCS2B01G514600	chr2B	12857218	12858045	827	True	911.000000	911	86.667000	1	830	1	chr2B.!!$R2	829
3	TraesCS2B01G514600	chr6D	8576685	8578659	1974	True	2311.000000	2311	87.903000	828	2795	1	chr6D.!!$R1	1967
4	TraesCS2B01G514600	chr6D	33895309	33896202	893	False	612.000000	612	79.185000	828	1730	1	chr6D.!!$F3	902
5	TraesCS2B01G514600	chr6D	8817617	8818201	584	False	424.000000	424	80.442000	2230	2792	1	chr6D.!!$F1	562
6	TraesCS2B01G514600	chr6D	34019219	34019816	597	False	304.500000	459	87.346500	2104	2656	2	chr6D.!!$F4	552
7	TraesCS2B01G514600	chr6B	15247384	15249237	1853	True	1544.000000	1544	82.095000	828	2656	1	chr6B.!!$R1	1828
8	TraesCS2B01G514600	chr6B	670600520	670601917	1397	True	1068.000000	1068	80.720000	828	2223	1	chr6B.!!$R4	1395
9	TraesCS2B01G514600	chr6B	16255700	16256709	1009	False	957.000000	957	83.937000	1007	2017	1	chr6B.!!$F1	1010
10	TraesCS2B01G514600	chr6B	16320846	16321717	871	False	896.000000	896	85.291000	828	1699	1	chr6B.!!$F2	871
11	TraesCS2B01G514600	chr6B	15298103	15298849	746	True	610.000000	610	81.510000	1241	2005	1	chr6B.!!$R2	764
12	TraesCS2B01G514600	chr6B	53074504	53075837	1333	True	602.500000	706	84.499500	1356	2656	2	chr6B.!!$R5	1300
13	TraesCS2B01G514600	chr7D	47827171	47827985	814	False	972.000000	972	88.164000	3	828	1	chr7D.!!$F2	825
14	TraesCS2B01G514600	chr1D	478937795	478938608	813	False	952.000000	952	87.726000	3	831	1	chr1D.!!$F1	828
15	TraesCS2B01G514600	chr7A	154367754	154372756	5002	False	578.500000	911	88.221500	3	829	2	chr7A.!!$F1	826
16	TraesCS2B01G514600	chr5D	42073873	42075245	1372	False	900.000000	900	78.895000	835	2224	1	chr5D.!!$F1	1389
17	TraesCS2B01G514600	chrUn	65789155	65790492	1337	True	857.000000	857	78.577000	834	2158	1	chrUn.!!$R1	1324
18	TraesCS2B01G514600	chr6A	9364867	9367010	2143	False	531.666667	676	84.010000	825	2789	3	chr6A.!!$F1	1964
19	TraesCS2B01G514600	chr6A	35566801	35567388	587	True	390.000000	390	79.801000	2225	2790	1	chr6A.!!$R1	565
20	TraesCS2B01G514600	chr3B	778341732	778342628	896	True	623.000000	623	79.454000	828	1733	1	chr3B.!!$R1	905
21	TraesCS2B01G514600	chr3D	582880119	582880848	729	False	553.000000	553	80.511000	828	1566	1	chr3D.!!$F1	738
22	TraesCS2B01G514600	chr2D	62967227	62972480	5253	True	363.333333	457	89.524333	3	829	3	chr2D.!!$R1	826

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
258	4473	0.107993	CCAGCGATGTGGTCAGTGAT	60.108	55.0	0.0	0.0	32.32	3.06	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2086	6828	0.877071	GTATCGCCCAGAATGCCATG	59.123	55.0	0.0	0.0	31.97	3.66	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
98	4313	2.814919	GTGTTCTCGAGGAAGAGAGTGA	59.185	50.000	13.56	0.00	46.56	3.41
162	4377	3.069318	GAGCCCGAAGACCTCCGT	61.069	66.667	0.00	0.00	0.00	4.69
171	4386	4.357947	GACCTCCGTGCTGACGCA	62.358	66.667	0.00	0.00	44.68	5.24
186	4401	1.301716	CGCAGTTGTACAGCCAGGT	60.302	57.895	6.04	0.00	0.00	4.00
229	4444	2.196776	CAGGATGGGTCATGGGGC	59.803	66.667	0.00	0.00	32.69	5.80
232	4447	3.809013	GATGGGTCATGGGGCCGT	61.809	66.667	0.00	0.00	0.00	5.68
253	4468	4.408821	GGGCCAGCGATGTGGTCA	62.409	66.667	4.39	0.00	44.77	4.02
258	4473	0.107993	CCAGCGATGTGGTCAGTGAT	60.108	55.000	0.00	0.00	32.32	3.06
286	4501	1.662446	GGCGAACGTGACCTCGAAA	60.662	57.895	11.33	0.00	37.23	3.46
298	4513	1.134220	ACCTCGAAAAGAGTGCACCAA	60.134	47.619	14.63	0.00	45.44	3.67
313	4529	0.251787	ACCAATGGGAGAAGTTGGGC	60.252	55.000	3.55	0.00	45.17	5.36
339	4555	0.182061	AGCATGAGCACGATGGGAAT	59.818	50.000	0.00	0.00	45.49	3.01
353	4569	3.719268	TGGGAATGTGCTAGTTGATGT	57.281	42.857	0.00	0.00	0.00	3.06
355	4571	5.172687	TGGGAATGTGCTAGTTGATGTAA	57.827	39.130	0.00	0.00	0.00	2.41
377	4593	3.578272	CGGCGAGAGGAGAGACGG	61.578	72.222	0.00	0.00	0.00	4.79
380	4596	2.124487	CGAGAGGAGAGACGGGCT	60.124	66.667	0.00	0.00	0.00	5.19
412	4887	4.816984	GAGGAGGAGGCCGTCGGA	62.817	72.222	17.49	0.00	0.00	4.55
457	4932	2.693864	ATGGCAGAGGGGGTGAGG	60.694	66.667	0.00	0.00	0.00	3.86
467	4942	2.689034	GGGTGAGGAGGGTCTGGG	60.689	72.222	0.00	0.00	0.00	4.45
468	4943	2.122954	GGTGAGGAGGGTCTGGGT	59.877	66.667	0.00	0.00	0.00	4.51
505	4980	4.681978	GGCGTGGCGAGTGAACCT	62.682	66.667	0.00	0.00	0.00	3.50
513	4988	2.893398	GAGTGAACCTCCGCCGAT	59.107	61.111	0.00	0.00	33.79	4.18
515	4990	2.511600	GTGAACCTCCGCCGATGG	60.512	66.667	0.00	0.00	0.00	3.51
654	5135	5.387113	ACCATGTAGAATGCTATGGGAAA	57.613	39.130	7.33	0.00	33.08	3.13
694	5175	3.189702	GTGCTCTCCGATCTATACACTCC	59.810	52.174	0.00	0.00	0.00	3.85
724	5205	1.072505	CAGGTTACAACAGGGGCGT	59.927	57.895	0.00	0.00	0.00	5.68
725	5206	1.072505	AGGTTACAACAGGGGCGTG	59.927	57.895	0.00	0.00	0.00	5.34
762	5243	1.609635	TACGTGCATGGATCGTGGGT	61.610	55.000	19.35	3.27	38.27	4.51
773	5254	3.928769	CGTGGGTGATCGCATGCG	61.929	66.667	33.61	33.61	38.69	4.73
806	5289	0.396556	GGGGGAGAGAGGTGAGAGAC	60.397	65.000	0.00	0.00	0.00	3.36
858	5341	2.429930	CTTGTCGCCAAGGACCCA	59.570	61.111	0.00	0.00	43.62	4.51
888	5371	2.343758	GCCAGCGTGGAGAGAACA	59.656	61.111	8.04	0.00	40.96	3.18
892	5375	0.315251	CAGCGTGGAGAGAACACTGA	59.685	55.000	0.00	0.00	36.71	3.41
894	5377	1.004277	GCGTGGAGAGAACACTGACG	61.004	60.000	0.00	0.00	36.71	4.35
913	5396	3.432588	CCGTCGTCGTCAGGCTCT	61.433	66.667	0.71	0.00	35.01	4.09
915	5398	2.098680	GTCGTCGTCAGGCTCTCG	59.901	66.667	0.00	2.06	0.00	4.04
927	5410	4.521062	CTCTCGGGCCTCGGCTTG	62.521	72.222	0.84	0.93	41.60	4.01
937	5420	1.154093	CTCGGCTTGTCGCGTTCTA	60.154	57.895	5.77	0.00	40.44	2.10
939	5422	0.318869	TCGGCTTGTCGCGTTCTAAA	60.319	50.000	5.77	0.00	40.44	1.85
942	5425	2.346244	CGGCTTGTCGCGTTCTAAAATA	59.654	45.455	5.77	0.00	40.44	1.40
976	5465	1.687494	GCTCGCGCTCGACAAATTCT	61.687	55.000	5.56	0.00	40.21	2.40
981	5470	1.662876	GCGCTCGACAAATTCTGCAAA	60.663	47.619	0.00	0.00	0.00	3.68
1000	5489	0.182537	AAAATCCATCATCGCCGGGA	59.817	50.000	2.18	0.00	0.00	5.14
1153	5648	3.554960	CGGGCTAGCTGCTTGTGATATTA	60.555	47.826	15.72	0.00	42.39	0.98
1169	5664	7.840931	TGTGATATTACCAGGCTCTACATATG	58.159	38.462	0.00	0.00	0.00	1.78
1178	5673	5.494724	CAGGCTCTACATATGTATGCCATT	58.505	41.667	35.62	24.73	44.75	3.16
1305	5800	1.806542	GTTGCATTCCTCAGCGAAGAA	59.193	47.619	0.00	0.00	0.00	2.52
1390	5885	4.976116	GCATTGTTGTTTCTAAGTGTCCAC	59.024	41.667	0.00	0.00	0.00	4.02
1443	5938	1.134788	CGCAGGTCCGAGTTCCTTATT	60.135	52.381	0.00	0.00	30.91	1.40
1518	6013	0.188834	ATAGTCTAGAGGGCCGGCTT	59.811	55.000	28.56	15.62	0.00	4.35
1560	6055	9.996554	ATTGTAAAGTTTCTTAAGGAAAATGGG	57.003	29.630	0.00	0.00	44.34	4.00
1598	6093	6.002704	ACCGGGACTACTATAATACACTCAG	58.997	44.000	6.32	0.00	0.00	3.35
1634	6129	9.566432	GAAGGTATTCATGGAGAAGTTCATATT	57.434	33.333	5.50	0.00	40.15	1.28
1663	6158	1.300963	GAAGCTGCACCCCATCTCA	59.699	57.895	1.02	0.00	0.00	3.27
1666	6161	1.451028	GCTGCACCCCATCTCACTC	60.451	63.158	0.00	0.00	0.00	3.51
1679	6174	5.181009	CCATCTCACTCAAGACTATGCAAA	58.819	41.667	0.00	0.00	0.00	3.68
1719	6214	1.418637	TCCGCCAGGTTCAGTTTTACT	59.581	47.619	0.00	0.00	39.05	2.24
1809	6304	3.202097	GCTATGAGCTTGTTCTTCCTCC	58.798	50.000	0.00	0.00	38.45	4.30
1811	6306	4.100189	GCTATGAGCTTGTTCTTCCTCCTA	59.900	45.833	0.00	0.00	38.45	2.94
1819	6316	8.497910	AGCTTGTTCTTCCTCCTATCATATTA	57.502	34.615	0.00	0.00	0.00	0.98
1855	6364	5.187967	GGAACTAAGAAAGTGAGATCAGGGA	59.812	44.000	0.00	0.00	38.88	4.20
1883	6592	7.768582	TCCTGCAAATTCTTTGAAGTATCGATA	59.231	33.333	0.00	0.00	43.53	2.92
2078	6820	4.273005	TCAGTTTTCGTTTGTCTCTTGC	57.727	40.909	0.00	0.00	0.00	4.01
2100	6842	0.036199	TTTTGCATGGCATTCTGGGC	60.036	50.000	0.00	0.00	38.76	5.36
2118	6861	2.638363	GGGCGATACTTTTCTAGGGGAT	59.362	50.000	0.00	0.00	0.00	3.85
2123	6866	5.453480	GCGATACTTTTCTAGGGGATTCTGT	60.453	44.000	0.00	0.00	0.00	3.41
2183	6926	6.292328	GCATTTTTGTTGAAAGCCTACTTGTC	60.292	38.462	0.00	0.00	35.85	3.18
2187	6930	7.817418	TTTGTTGAAAGCCTACTTGTCTATT	57.183	32.000	0.00	0.00	35.85	1.73
2319	7094	4.707448	TGGCATTACCATGTTAATTTCGGT	59.293	37.500	0.00	0.00	46.36	4.69
2578	7400	2.161855	TGTGAGGATGGTGCACATTTC	58.838	47.619	20.43	11.45	40.72	2.17
2624	7446	8.593679	TGTGTAAGTTGGAAGAAATGAGATCTA	58.406	33.333	0.00	0.00	0.00	1.98
2657	7511	2.232696	TGCAGTAAGGCAACGAGATGTA	59.767	45.455	0.00	0.00	41.65	2.29
2672	7526	9.113876	CAACGAGATGTAATTTAAAGACCAAAC	57.886	33.333	0.00	0.00	0.00	2.93
2777	7636	4.583871	AGGTTGATGGATGAAGTGACTTC	58.416	43.478	18.01	18.01	40.54	3.01

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
39	4254	2.859165	TCTCTCCACCGAATTTTGCT	57.141	45.000	0.00	0.00	0.00	3.91
98	4313	1.617947	GCCGTCTGGGAGTCCATCTT	61.618	60.000	12.30	0.00	43.11	2.40
171	4386	0.687354	CCTCACCTGGCTGTACAACT	59.313	55.000	0.00	0.00	0.00	3.16
216	4431	4.127744	CACGGCCCCATGACCCAT	62.128	66.667	0.00	0.00	0.00	4.00
253	4468	3.058160	GCCAAGCACGCCATCACT	61.058	61.111	0.00	0.00	0.00	3.41
286	4501	1.067295	TCTCCCATTGGTGCACTCTT	58.933	50.000	17.98	0.00	0.00	2.85
298	4513	2.677228	CCGCCCAACTTCTCCCAT	59.323	61.111	0.00	0.00	0.00	4.00
313	4529	2.743752	CGTGCTCATGCTCAACCCG	61.744	63.158	0.00	0.00	40.48	5.28
339	4555	4.242475	CGGAGTTTACATCAACTAGCACA	58.758	43.478	0.00	0.00	37.11	4.57
345	4561	1.274167	TCGCCGGAGTTTACATCAACT	59.726	47.619	5.05	0.00	39.84	3.16
353	4569	0.034767	TCTCCTCTCGCCGGAGTTTA	60.035	55.000	5.05	0.00	46.49	2.01
355	4571	1.751162	CTCTCCTCTCGCCGGAGTT	60.751	63.158	5.05	0.00	46.49	3.01
412	4887	2.590007	GCGCTCTTCATGCCGGAT	60.590	61.111	5.05	0.00	0.00	4.18
441	4916	3.931631	CTCCTCACCCCCTCTGCCA	62.932	68.421	0.00	0.00	0.00	4.92
457	4932	0.399233	AGAGCCATACCCAGACCCTC	60.399	60.000	0.00	0.00	0.00	4.30
467	4942	1.124477	CCCTCCTCCCAGAGCCATAC	61.124	65.000	0.00	0.00	32.17	2.39
468	4943	1.237163	CCCTCCTCCCAGAGCCATA	59.763	63.158	0.00	0.00	32.17	2.74
497	4972	2.579201	CATCGGCGGAGGTTCACT	59.421	61.111	7.21	0.00	0.00	3.41
499	4974	4.467084	GCCATCGGCGGAGGTTCA	62.467	66.667	17.35	0.00	39.62	3.18
569	5050	4.767255	CCCTCTGCACCTCGTGGC	62.767	72.222	2.76	0.00	36.63	5.01
570	5051	4.087892	CCCCTCTGCACCTCGTGG	62.088	72.222	0.99	0.99	39.83	4.94
605	5086	1.965754	GCAGGGCTCATTCCTCGTCT	61.966	60.000	0.00	0.00	31.06	4.18
654	5135	0.779997	ACCCAAGGTGCAATCTCCTT	59.220	50.000	0.56	0.56	44.53	3.36
694	5175	8.470805	CCCTGTTGTAACCTGAGCTATATATAG	58.529	40.741	14.45	14.45	0.00	1.31
762	5243	1.876263	CACGTACCGCATGCGATCA	60.876	57.895	39.90	21.44	42.83	2.92
790	5273	2.026262	AGTCTGTCTCTCACCTCTCTCC	60.026	54.545	0.00	0.00	0.00	3.71
796	5279	4.018779	AGTTAGCTAGTCTGTCTCTCACCT	60.019	45.833	0.00	0.00	0.00	4.00
797	5280	4.095782	CAGTTAGCTAGTCTGTCTCTCACC	59.904	50.000	15.44	0.00	0.00	4.02
799	5282	3.692101	GCAGTTAGCTAGTCTGTCTCTCA	59.308	47.826	20.98	0.00	41.15	3.27
843	5326	1.228124	CTTTGGGTCCTTGGCGACA	60.228	57.895	0.00	0.00	34.24	4.35
927	5410	1.987848	GCGCTATTTTAGAACGCGAC	58.012	50.000	15.93	6.52	45.99	5.19
981	5470	0.182537	TCCCGGCGATGATGGATTTT	59.817	50.000	9.30	0.00	0.00	1.82
1000	5489	0.032813	AGGGGCAAGCAGTAATGCAT	60.033	50.000	18.53	1.61	44.32	3.96
1005	5494	1.547675	CCAAAGAGGGGCAAGCAGTAA	60.548	52.381	0.00	0.00	0.00	2.24
1032	5521	0.108089	GGGCTCGAAGGAGGTTCTTC	60.108	60.000	0.00	0.00	40.80	2.87
1033	5522	0.545548	AGGGCTCGAAGGAGGTTCTT	60.546	55.000	0.00	0.00	40.80	2.52
1153	5648	3.261897	GGCATACATATGTAGAGCCTGGT	59.738	47.826	33.66	12.86	44.95	4.00
1390	5885	6.633500	TTCTTTATTCCTGGACAACACTTG	57.367	37.500	0.00	0.00	0.00	3.16
1443	5938	1.271707	GGTTCCAATCCCAACTCGGAA	60.272	52.381	0.00	0.00	36.56	4.30
1518	6013	1.691337	AATGTAGCACCGGGGCCTA	60.691	57.895	28.92	14.71	0.00	3.93
1560	6055	1.412710	TCCCGGTCATGATCTAGCAAC	59.587	52.381	4.09	0.00	0.00	4.17
1598	6093	4.926238	CCATGAATACCTTCTCGCTGATAC	59.074	45.833	0.00	0.00	32.29	2.24
1634	6129	1.376466	GCAGCTTCCTTGTGAGGGA	59.624	57.895	0.00	0.00	43.72	4.20
1663	6158	5.306532	CAAGCATTTGCATAGTCTTGAGT	57.693	39.130	12.55	0.00	45.16	3.41
1689	6184	4.410400	CTGGCGGACACTTCCCCC	62.410	72.222	0.00	0.00	40.06	5.40
1707	6202	6.263344	GGTCTTGGTTCAAGTAAAACTGAAC	58.737	40.000	6.42	6.42	41.66	3.18
1719	6214	6.127758	CCATTTTCATATCGGTCTTGGTTCAA	60.128	38.462	0.00	0.00	0.00	2.69
1819	6316	9.436957	CACTTTCTTAGTTCCTATATGTGTGTT	57.563	33.333	0.00	0.00	33.85	3.32
1830	6335	5.188751	CCCTGATCTCACTTTCTTAGTTCCT	59.811	44.000	0.00	0.00	33.85	3.36
1893	6602	4.273480	ACACAAAGATACAGAGTGTGCAAC	59.727	41.667	0.00	0.00	42.63	4.17
1894	6603	4.450976	ACACAAAGATACAGAGTGTGCAA	58.549	39.130	0.00	0.00	42.63	4.08
2018	6755	7.873505	GTGAGAAACAGAAATACTACTTCCAGT	59.126	37.037	0.00	0.00	0.00	4.00
2078	6820	2.343101	CCAGAATGCCATGCAAAACTG	58.657	47.619	0.00	10.98	43.62	3.16
2086	6828	0.877071	GTATCGCCCAGAATGCCATG	59.123	55.000	0.00	0.00	31.97	3.66
2092	6834	4.202367	CCCTAGAAAAGTATCGCCCAGAAT	60.202	45.833	0.00	0.00	0.00	2.40
2100	6842	6.163135	ACAGAATCCCCTAGAAAAGTATCG	57.837	41.667	0.00	0.00	0.00	2.92
2118	6861	8.731275	TCAACTATTCAGTTTCAAGAACAGAA	57.269	30.769	0.00	0.38	42.51	3.02
2578	7400	3.003689	ACAACCTCGCATCAAGAACAAAG	59.996	43.478	0.00	0.00	0.00	2.77
2624	7446	1.949525	CTTACTGCAAGCACACACCTT	59.050	47.619	0.00	0.00	37.60	3.50
2672	7526	3.370104	AGGGACACACCTTAGATCTCAG	58.630	50.000	0.00	0.00	37.69	3.35
2681	7535	1.974236	CAGAGAAGAGGGACACACCTT	59.026	52.381	0.00	0.00	42.10	3.50
2741	7595	4.446371	CATCAACCTATTCACCTCACCTC	58.554	47.826	0.00	0.00	0.00	3.85

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.