Multiple sequence alignment - TraesCS2B01G514100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G514100 chr2B 100.000 3770 0 0 1 3770 708981143 708984912 0.000000e+00 6962.0
1 TraesCS2B01G514100 chr2B 100.000 471 0 0 4132 4602 708985274 708985744 0.000000e+00 870.0
2 TraesCS2B01G514100 chr2B 92.683 82 5 1 1 82 602254608 602254688 2.910000e-22 117.0
3 TraesCS2B01G514100 chr2B 95.714 70 3 0 1 70 68395092 68395161 3.760000e-21 113.0
4 TraesCS2B01G514100 chr2B 98.387 62 1 0 1 62 24189756 24189817 4.870000e-20 110.0
5 TraesCS2B01G514100 chr2B 91.304 69 4 1 4252 4320 298152380 298152446 4.900000e-15 93.5
6 TraesCS2B01G514100 chr2B 89.189 74 5 2 4259 4332 461094569 461094639 6.340000e-14 89.8
7 TraesCS2B01G514100 chr2A 88.588 2287 191 42 1515 3756 721985148 721987409 0.000000e+00 2713.0
8 TraesCS2B01G514100 chr2A 93.268 609 35 4 829 1431 721984352 721984960 0.000000e+00 893.0
9 TraesCS2B01G514100 chr2A 83.691 466 52 10 373 825 92681263 92680809 7.120000e-113 418.0
10 TraesCS2B01G514100 chr2A 92.766 235 17 0 121 355 92681741 92681507 1.590000e-89 340.0
11 TraesCS2B01G514100 chr2A 84.549 233 26 9 602 829 717015524 717015297 5.990000e-54 222.0
12 TraesCS2B01G514100 chr2D 89.856 2149 128 39 1674 3770 587162870 587164980 0.000000e+00 2678.0
13 TraesCS2B01G514100 chr2D 92.439 529 36 3 911 1435 587162089 587162617 0.000000e+00 752.0
14 TraesCS2B01G514100 chr2D 89.175 194 19 2 1453 1644 587162675 587162868 1.650000e-59 241.0
15 TraesCS2B01G514100 chr2D 90.244 123 11 1 4132 4254 587165065 587165186 4.770000e-35 159.0
16 TraesCS2B01G514100 chr3B 88.486 773 50 12 63 828 409597943 409598683 0.000000e+00 898.0
17 TraesCS2B01G514100 chr3B 98.551 69 0 1 1 69 565425750 565425817 2.250000e-23 121.0
18 TraesCS2B01G514100 chr6B 87.944 788 45 19 63 827 30463162 30463922 0.000000e+00 883.0
19 TraesCS2B01G514100 chr6B 79.467 375 38 23 489 825 523503830 523503457 3.580000e-56 230.0
20 TraesCS2B01G514100 chr6B 93.506 77 4 1 1 77 124654907 124654832 3.760000e-21 113.0
21 TraesCS2B01G514100 chr3D 83.721 344 36 8 502 825 557637318 557636975 1.610000e-79 307.0
22 TraesCS2B01G514100 chr3D 87.179 78 8 1 4244 4321 87925992 87926067 2.280000e-13 87.9
23 TraesCS2B01G514100 chr3D 85.057 87 9 3 4252 4337 528611687 528611604 8.200000e-13 86.1
24 TraesCS2B01G514100 chr1A 79.841 377 35 22 489 825 459193480 459193855 2.140000e-58 237.0
25 TraesCS2B01G514100 chr1A 79.365 378 32 25 489 834 382234801 382234438 1.670000e-54 224.0
26 TraesCS2B01G514100 chrUn 86.099 223 22 7 603 825 141674628 141674841 9.960000e-57 231.0
27 TraesCS2B01G514100 chr3A 85.321 218 32 0 602 819 732360654 732360871 4.630000e-55 226.0
28 TraesCS2B01G514100 chr4A 78.933 375 34 22 489 832 625763881 625763521 3.610000e-51 213.0
29 TraesCS2B01G514100 chr4A 86.250 80 9 1 4248 4327 673962977 673962900 8.200000e-13 86.1
30 TraesCS2B01G514100 chr5B 92.941 85 4 2 1 83 510316766 510316850 6.250000e-24 122.0
31 TraesCS2B01G514100 chr7B 93.506 77 5 0 1 77 689578655 689578731 1.050000e-21 115.0
32 TraesCS2B01G514100 chr1B 94.595 74 4 0 1 74 106822286 106822213 1.050000e-21 115.0
33 TraesCS2B01G514100 chr1B 85.882 85 8 3 4244 4327 40182361 40182280 2.280000e-13 87.9
34 TraesCS2B01G514100 chr4B 87.912 91 9 2 1 89 484981855 484981945 6.300000e-19 106.0
35 TraesCS2B01G514100 chr7D 87.654 81 7 2 4241 4321 492847724 492847801 1.760000e-14 91.6
36 TraesCS2B01G514100 chr5A 88.312 77 6 2 4246 4321 688327040 688327114 6.340000e-14 89.8
37 TraesCS2B01G514100 chr6D 87.342 79 6 3 4244 4321 438321726 438321801 2.280000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G514100 chr2B 708981143 708985744 4601 False 3916.0 6962 100.0000 1 4602 2 chr2B.!!$F6 4601
1 TraesCS2B01G514100 chr2A 721984352 721987409 3057 False 1803.0 2713 90.9280 829 3756 2 chr2A.!!$F1 2927
2 TraesCS2B01G514100 chr2A 92680809 92681741 932 True 379.0 418 88.2285 121 825 2 chr2A.!!$R2 704
3 TraesCS2B01G514100 chr2D 587162089 587165186 3097 False 957.5 2678 90.4285 911 4254 4 chr2D.!!$F1 3343
4 TraesCS2B01G514100 chr3B 409597943 409598683 740 False 898.0 898 88.4860 63 828 1 chr3B.!!$F1 765
5 TraesCS2B01G514100 chr6B 30463162 30463922 760 False 883.0 883 87.9440 63 827 1 chr6B.!!$F1 764

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
393 620 0.459585 GAAGTGAACTATCGCCGGCA 60.460 55.000 28.98 14.46 36.72 5.69 F
596 855 0.460311 GCTCGGGCTATAGTGTGTGT 59.540 55.000 0.00 0.00 35.22 3.72 F
1972 2371 0.895530 CGACTTGGTGAGGCTCCTTA 59.104 55.000 12.86 0.00 0.00 2.69 F
2080 2483 1.070914 GTAGGCATAGTGAGCTTCCCC 59.929 57.143 0.00 0.00 0.00 4.81 F
3015 3475 1.207329 AGTCTTATTGTCGGAGCACCC 59.793 52.381 0.00 0.00 0.00 4.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1340 1625 0.107993 ACACATCGCCATCAGGTCTG 60.108 55.0 0.00 0.00 37.19 3.51 R
2080 2483 0.954452 GCAAGTGAGAGTGGGGTTTG 59.046 55.0 0.00 0.00 0.00 2.93 R
3007 3467 0.252197 ATTGGAGTTACGGGTGCTCC 59.748 55.0 13.74 13.74 46.61 4.70 R
3555 4023 2.499289 GTCTTCCTCAAGCTCTCCATCA 59.501 50.0 0.00 0.00 0.00 3.07 R
4436 4904 0.036388 TCACCTTGGAGGCGAATGAC 60.036 55.0 0.00 0.00 39.63 3.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
48 49 9.981460 ATAATCCTTTTATTATTGCCTCTAGGG 57.019 33.333 0.00 0.00 29.60 3.53
61 62 4.437682 CCTCTAGGGCATATTTCCAACA 57.562 45.455 0.00 0.00 0.00 3.33
62 63 4.990526 CCTCTAGGGCATATTTCCAACAT 58.009 43.478 0.00 0.00 0.00 2.71
63 64 5.388654 CCTCTAGGGCATATTTCCAACATT 58.611 41.667 0.00 0.00 0.00 2.71
64 65 5.474876 CCTCTAGGGCATATTTCCAACATTC 59.525 44.000 0.00 0.00 0.00 2.67
65 66 5.063204 TCTAGGGCATATTTCCAACATTCG 58.937 41.667 0.00 0.00 0.00 3.34
393 620 0.459585 GAAGTGAACTATCGCCGGCA 60.460 55.000 28.98 14.46 36.72 5.69
449 676 3.000819 AACTCACCGGGATCCGCA 61.001 61.111 6.32 0.00 46.86 5.69
463 690 2.979676 CGCACAGCACCACACCAT 60.980 61.111 0.00 0.00 0.00 3.55
467 694 2.032528 CAGCACCACACCATCGGT 59.967 61.111 0.00 0.00 35.62 4.69
473 700 1.815421 CCACACCATCGGTAGCTGC 60.815 63.158 0.00 0.00 32.11 5.25
589 848 2.995872 GCCTCCGCTCGGGCTATAG 61.996 68.421 5.36 0.00 44.48 1.31
590 849 1.604023 CCTCCGCTCGGGCTATAGT 60.604 63.158 5.36 0.00 36.09 2.12
591 850 1.581954 CTCCGCTCGGGCTATAGTG 59.418 63.158 5.36 0.00 36.09 2.74
592 851 1.152819 TCCGCTCGGGCTATAGTGT 60.153 57.895 5.36 0.00 36.09 3.55
593 852 1.007271 CCGCTCGGGCTATAGTGTG 60.007 63.158 5.36 0.00 36.09 3.82
594 853 1.734137 CGCTCGGGCTATAGTGTGT 59.266 57.895 5.36 0.00 36.09 3.72
595 854 0.595053 CGCTCGGGCTATAGTGTGTG 60.595 60.000 5.36 0.00 36.09 3.82
596 855 0.460311 GCTCGGGCTATAGTGTGTGT 59.540 55.000 0.00 0.00 35.22 3.72
597 856 1.802880 GCTCGGGCTATAGTGTGTGTG 60.803 57.143 0.00 0.00 35.22 3.82
598 857 1.476891 CTCGGGCTATAGTGTGTGTGT 59.523 52.381 0.84 0.00 0.00 3.72
646 915 2.180276 GGAAGAAGGTGAGGCAGAGTA 58.820 52.381 0.00 0.00 0.00 2.59
661 930 3.090037 CAGAGTAGGGGAAGAAGAACGA 58.910 50.000 0.00 0.00 0.00 3.85
666 935 2.890814 AGGGGAAGAAGAACGAGAGAA 58.109 47.619 0.00 0.00 0.00 2.87
669 938 2.228343 GGGAAGAAGAACGAGAGAACGA 59.772 50.000 0.00 0.00 37.03 3.85
685 954 3.749064 GAGAGTGAGGGCGTGCGA 61.749 66.667 0.00 0.00 0.00 5.10
727 996 1.888436 GAGGCTGTGGGATGACGTGA 61.888 60.000 0.00 0.00 0.00 4.35
730 999 1.289066 CTGTGGGATGACGTGACGT 59.711 57.895 11.70 11.70 45.10 4.34
750 1019 4.034742 ACGTCGTACAGTGCTTCAAAAATT 59.965 37.500 0.00 0.00 0.00 1.82
766 1035 7.192148 TCAAAAATTGTGCAAAATGATCCAG 57.808 32.000 1.98 0.00 0.00 3.86
788 1057 4.002506 AGATGACGCGTGTGGGCA 62.003 61.111 20.70 8.60 0.00 5.36
855 1134 5.983118 AGAAATGGTAAAAGGCGAAAAACAG 59.017 36.000 0.00 0.00 0.00 3.16
922 1201 7.364144 GGGCCTAACTCATCATCAAAAGAAAAT 60.364 37.037 0.84 0.00 0.00 1.82
1314 1599 1.202452 GCTCTTGCTGTTTGTGGCTTT 60.202 47.619 0.00 0.00 36.03 3.51
1317 1602 1.935199 CTTGCTGTTTGTGGCTTTTGG 59.065 47.619 0.00 0.00 0.00 3.28
1334 1619 5.415701 GCTTTTGGATTCTGACCAGATGTAA 59.584 40.000 0.01 0.00 38.70 2.41
1340 1625 5.452636 GGATTCTGACCAGATGTAAGAGGAC 60.453 48.000 0.01 0.00 35.77 3.85
1440 1725 2.575461 GCAAGTTGCATCCTGCCC 59.425 61.111 22.90 0.00 44.23 5.36
1443 1728 1.980772 AAGTTGCATCCTGCCCTGC 60.981 57.895 0.00 0.00 44.23 4.85
1451 1736 2.749466 GCATCCTGCCCTGCTAACATTA 60.749 50.000 0.00 0.00 37.42 1.90
1462 1793 6.294731 GCCCTGCTAACATTATTGGGATTTAG 60.295 42.308 0.00 0.00 35.40 1.85
1530 1925 6.625873 AGAGGACTTTGAAGTGTTGAAATC 57.374 37.500 0.30 0.00 39.88 2.17
1561 1957 3.181487 GGCACGTTTTTAGCATGGATCAT 60.181 43.478 0.00 0.00 0.00 2.45
1595 1991 5.124457 GTGCATCTTGCTCTTTTCTTATCCA 59.876 40.000 0.00 0.00 45.31 3.41
1614 2010 6.911250 ATCCATTCATATGCAACATCATGT 57.089 33.333 0.00 0.00 0.00 3.21
1630 2026 4.456280 TCATGTTGTAGATCGCTGTTCT 57.544 40.909 0.00 0.00 0.00 3.01
1649 2045 9.608617 GCTGTTCTTGTTTAAGGAAAGTATAAC 57.391 33.333 0.00 0.00 30.39 1.89
1662 2058 6.719370 AGGAAAGTATAACTTGTCATTTGCCA 59.281 34.615 0.00 0.00 38.66 4.92
1667 2063 8.574251 AGTATAACTTGTCATTTGCCATACAA 57.426 30.769 0.00 0.00 36.13 2.41
1671 2067 5.472148 ACTTGTCATTTGCCATACAATGTG 58.528 37.500 0.00 0.00 38.31 3.21
1688 2084 6.276611 CAATGTGTATGCATTGTATTTGCC 57.723 37.500 3.54 0.00 46.24 4.52
1691 2087 3.798337 GTGTATGCATTGTATTTGCCTGC 59.202 43.478 3.54 0.00 39.39 4.85
1782 2178 5.577835 TGTTTGCTGTACACAATTCTTGTC 58.422 37.500 10.37 0.00 43.23 3.18
1786 2182 4.881273 TGCTGTACACAATTCTTGTCTGTT 59.119 37.500 0.00 0.00 43.23 3.16
1844 2243 7.347222 ACTTATTTGTACAGGATAGATGACCCA 59.653 37.037 0.00 0.00 0.00 4.51
1972 2371 0.895530 CGACTTGGTGAGGCTCCTTA 59.104 55.000 12.86 0.00 0.00 2.69
1990 2389 7.065443 GGCTCCTTATCGTGTTTGTTATTTACT 59.935 37.037 0.00 0.00 0.00 2.24
2050 2453 7.553881 AATCAGTATGTTATTACTGTGGCAC 57.446 36.000 11.55 11.55 46.02 5.01
2080 2483 1.070914 GTAGGCATAGTGAGCTTCCCC 59.929 57.143 0.00 0.00 0.00 4.81
2123 2539 1.808411 ACTAATGTTGTGGAGCACCG 58.192 50.000 0.00 0.00 39.42 4.94
2182 2598 3.455910 AGTGGAGCTAGTTAATGGCATCA 59.544 43.478 0.00 0.00 38.00 3.07
2192 2608 9.533253 GCTAGTTAATGGCATCATTTTGTTAAT 57.467 29.630 0.00 0.00 42.90 1.40
2279 2695 4.323868 CCTTCGTAGTTCTAACAAGCTTCG 59.676 45.833 0.00 0.00 0.00 3.79
2323 2739 6.211515 CAATCATGGTTTATTGCTCTAAGCC 58.788 40.000 0.00 5.27 41.51 4.35
2324 2740 5.116084 TCATGGTTTATTGCTCTAAGCCT 57.884 39.130 11.11 0.00 41.51 4.58
2325 2741 5.126067 TCATGGTTTATTGCTCTAAGCCTC 58.874 41.667 11.11 0.00 41.51 4.70
2326 2742 4.844349 TGGTTTATTGCTCTAAGCCTCT 57.156 40.909 11.11 0.00 41.51 3.69
2327 2743 5.950544 TGGTTTATTGCTCTAAGCCTCTA 57.049 39.130 11.11 0.00 41.51 2.43
2328 2744 6.308015 TGGTTTATTGCTCTAAGCCTCTAA 57.692 37.500 11.11 0.00 41.51 2.10
2339 2755 5.577100 TCTAAGCCTCTAACTACCAAGACA 58.423 41.667 0.00 0.00 0.00 3.41
2391 2823 7.226325 AGCATTCTGTATGTTATTTCTCTCTGC 59.774 37.037 0.00 0.00 36.57 4.26
2394 2826 7.410120 TCTGTATGTTATTTCTCTCTGCTGA 57.590 36.000 0.00 0.00 0.00 4.26
2609 3068 8.854979 TGTGTGTTTTTGTCATCTTTATTCTG 57.145 30.769 0.00 0.00 0.00 3.02
2818 3277 3.118038 TGGAGGCTGGGTATGTACATTTC 60.118 47.826 14.77 7.83 0.00 2.17
2819 3278 3.136626 GGAGGCTGGGTATGTACATTTCT 59.863 47.826 14.77 1.87 0.00 2.52
2955 3415 2.619074 CCCTGAAGGAAAAGTAGCCCAG 60.619 54.545 0.00 0.00 38.24 4.45
3007 3467 2.673368 GGAACTGCCAGTCTTATTGTCG 59.327 50.000 0.00 0.00 36.34 4.35
3015 3475 1.207329 AGTCTTATTGTCGGAGCACCC 59.793 52.381 0.00 0.00 0.00 4.61
3028 3488 3.255969 GAGCACCCGTAACTCCAATAA 57.744 47.619 0.00 0.00 0.00 1.40
3186 3648 7.420002 TGCTGAAATCTGAATATATTGCACAC 58.580 34.615 1.78 0.00 0.00 3.82
3202 3664 4.702831 TGCACACAGTTTTATCTGTCTCA 58.297 39.130 0.00 0.00 45.37 3.27
3203 3665 5.308014 TGCACACAGTTTTATCTGTCTCAT 58.692 37.500 0.00 0.00 45.37 2.90
3204 3666 6.463360 TGCACACAGTTTTATCTGTCTCATA 58.537 36.000 0.00 0.00 45.37 2.15
3226 3688 7.819415 TCATATTCAGTAAACCACTTGACTCAG 59.181 37.037 0.00 0.00 34.26 3.35
3269 3732 7.399245 TTCCCTTTAATAAACCCAAATCTCG 57.601 36.000 0.00 0.00 0.00 4.04
3310 3777 4.527038 TCTGAACTTCTCCCGATTGTACTT 59.473 41.667 0.00 0.00 0.00 2.24
3645 4113 1.307647 GACCATGGGGCAAGGATGT 59.692 57.895 18.09 0.00 37.90 3.06
3687 4155 5.327737 ACCTTGTTGAATTGGTTAGGGTA 57.672 39.130 0.00 0.00 0.00 3.69
3688 4156 5.899278 ACCTTGTTGAATTGGTTAGGGTAT 58.101 37.500 0.00 0.00 0.00 2.73
3728 4196 4.849813 AGTTTCAGATGATGGGATCACA 57.150 40.909 0.00 0.00 43.01 3.58
3756 4224 3.053077 TGATTGGGAGGATACGGGAATT 58.947 45.455 0.00 0.00 46.39 2.17
4176 4644 3.777478 CTGTTGCCTAATTTCATGGCTG 58.223 45.455 0.00 0.00 46.23 4.85
4186 4654 0.893270 TTCATGGCTGTTTGGACCGG 60.893 55.000 0.00 0.00 0.00 5.28
4199 4667 0.460109 GGACCGGATTGCCATTTTGC 60.460 55.000 9.46 0.00 0.00 3.68
4216 4684 0.401738 TGCTTAGCCAAGGAACTGCT 59.598 50.000 0.29 0.00 40.86 4.24
4227 4695 5.435291 CCAAGGAACTGCTCATAGAGATTT 58.565 41.667 0.00 0.00 40.86 2.17
4232 4700 7.344913 AGGAACTGCTCATAGAGATTTTTCAT 58.655 34.615 0.00 0.00 37.18 2.57
4233 4701 7.282675 AGGAACTGCTCATAGAGATTTTTCATG 59.717 37.037 0.00 0.00 37.18 3.07
4256 4724 9.729023 CATGATCTCGTGATTATTATCTACTCC 57.271 37.037 0.87 0.00 34.90 3.85
4257 4725 8.863872 TGATCTCGTGATTATTATCTACTCCA 57.136 34.615 0.87 0.00 32.19 3.86
4258 4726 9.467796 TGATCTCGTGATTATTATCTACTCCAT 57.532 33.333 0.87 0.00 32.19 3.41
4261 4729 9.914131 TCTCGTGATTATTATCTACTCCATTTG 57.086 33.333 0.00 0.00 0.00 2.32
4262 4730 9.698309 CTCGTGATTATTATCTACTCCATTTGT 57.302 33.333 0.00 0.00 0.00 2.83
4311 4779 9.273016 AGATTTTTCAATATGGACTACATACGG 57.727 33.333 0.00 0.00 44.41 4.02
4312 4780 9.268268 GATTTTTCAATATGGACTACATACGGA 57.732 33.333 0.00 0.00 44.41 4.69
4313 4781 8.657074 TTTTTCAATATGGACTACATACGGAG 57.343 34.615 0.00 0.00 44.41 4.63
4314 4782 5.386958 TCAATATGGACTACATACGGAGC 57.613 43.478 0.00 0.00 44.41 4.70
4315 4783 4.830600 TCAATATGGACTACATACGGAGCA 59.169 41.667 0.00 0.00 44.41 4.26
4316 4784 5.303333 TCAATATGGACTACATACGGAGCAA 59.697 40.000 0.00 0.00 44.41 3.91
4317 4785 5.801531 ATATGGACTACATACGGAGCAAA 57.198 39.130 0.00 0.00 44.41 3.68
4318 4786 3.965379 TGGACTACATACGGAGCAAAA 57.035 42.857 0.00 0.00 0.00 2.44
4319 4787 4.481368 TGGACTACATACGGAGCAAAAT 57.519 40.909 0.00 0.00 0.00 1.82
4320 4788 4.188462 TGGACTACATACGGAGCAAAATG 58.812 43.478 0.00 0.00 0.00 2.32
4321 4789 4.189231 GGACTACATACGGAGCAAAATGT 58.811 43.478 0.00 0.00 36.56 2.71
4322 4790 4.270325 GGACTACATACGGAGCAAAATGTC 59.730 45.833 0.00 0.00 34.54 3.06
4323 4791 5.086104 ACTACATACGGAGCAAAATGTCT 57.914 39.130 0.00 0.00 34.54 3.41
4324 4792 4.870426 ACTACATACGGAGCAAAATGTCTG 59.130 41.667 0.00 0.00 34.54 3.51
4325 4793 3.937814 ACATACGGAGCAAAATGTCTGA 58.062 40.909 0.00 0.00 0.00 3.27
4326 4794 4.323417 ACATACGGAGCAAAATGTCTGAA 58.677 39.130 0.00 0.00 0.00 3.02
4327 4795 4.393062 ACATACGGAGCAAAATGTCTGAAG 59.607 41.667 0.00 0.00 0.00 3.02
4328 4796 1.537202 ACGGAGCAAAATGTCTGAAGC 59.463 47.619 0.00 0.00 0.00 3.86
4329 4797 1.135575 CGGAGCAAAATGTCTGAAGCC 60.136 52.381 0.00 0.00 0.00 4.35
4330 4798 2.165998 GGAGCAAAATGTCTGAAGCCT 58.834 47.619 0.00 0.00 0.00 4.58
4331 4799 3.347216 GGAGCAAAATGTCTGAAGCCTA 58.653 45.455 0.00 0.00 0.00 3.93
4332 4800 3.758554 GGAGCAAAATGTCTGAAGCCTAA 59.241 43.478 0.00 0.00 0.00 2.69
4333 4801 4.218417 GGAGCAAAATGTCTGAAGCCTAAA 59.782 41.667 0.00 0.00 0.00 1.85
4334 4802 5.105595 GGAGCAAAATGTCTGAAGCCTAAAT 60.106 40.000 0.00 0.00 0.00 1.40
4335 4803 5.958955 AGCAAAATGTCTGAAGCCTAAATC 58.041 37.500 0.00 0.00 0.00 2.17
4336 4804 5.713861 AGCAAAATGTCTGAAGCCTAAATCT 59.286 36.000 0.00 0.00 0.00 2.40
4337 4805 6.032717 GCAAAATGTCTGAAGCCTAAATCTC 58.967 40.000 0.00 0.00 0.00 2.75
4338 4806 6.558909 CAAAATGTCTGAAGCCTAAATCTCC 58.441 40.000 0.00 0.00 0.00 3.71
4339 4807 3.914426 TGTCTGAAGCCTAAATCTCCC 57.086 47.619 0.00 0.00 0.00 4.30
4340 4808 3.454858 TGTCTGAAGCCTAAATCTCCCT 58.545 45.455 0.00 0.00 0.00 4.20
4341 4809 3.846588 TGTCTGAAGCCTAAATCTCCCTT 59.153 43.478 0.00 0.00 0.00 3.95
4342 4810 4.195416 GTCTGAAGCCTAAATCTCCCTTG 58.805 47.826 0.00 0.00 0.00 3.61
4343 4811 4.080863 GTCTGAAGCCTAAATCTCCCTTGA 60.081 45.833 0.00 0.00 0.00 3.02
4344 4812 4.080863 TCTGAAGCCTAAATCTCCCTTGAC 60.081 45.833 0.00 0.00 0.00 3.18
4345 4813 2.990066 AGCCTAAATCTCCCTTGACG 57.010 50.000 0.00 0.00 0.00 4.35
4346 4814 2.188817 AGCCTAAATCTCCCTTGACGT 58.811 47.619 0.00 0.00 0.00 4.34
4347 4815 2.572104 AGCCTAAATCTCCCTTGACGTT 59.428 45.455 0.00 0.00 0.00 3.99
4348 4816 3.009143 AGCCTAAATCTCCCTTGACGTTT 59.991 43.478 0.00 0.00 0.00 3.60
4349 4817 3.756963 GCCTAAATCTCCCTTGACGTTTT 59.243 43.478 0.00 0.00 0.00 2.43
4350 4818 4.142665 GCCTAAATCTCCCTTGACGTTTTC 60.143 45.833 0.00 0.00 0.00 2.29
4351 4819 5.246307 CCTAAATCTCCCTTGACGTTTTCT 58.754 41.667 0.00 0.00 0.00 2.52
4352 4820 5.122396 CCTAAATCTCCCTTGACGTTTTCTG 59.878 44.000 0.00 0.00 0.00 3.02
4353 4821 4.351874 AATCTCCCTTGACGTTTTCTGA 57.648 40.909 0.00 0.00 0.00 3.27
4354 4822 3.107642 TCTCCCTTGACGTTTTCTGAC 57.892 47.619 0.00 0.00 0.00 3.51
4355 4823 2.143925 CTCCCTTGACGTTTTCTGACC 58.856 52.381 0.00 0.00 0.00 4.02
4356 4824 1.202722 TCCCTTGACGTTTTCTGACCC 60.203 52.381 0.00 0.00 0.00 4.46
4357 4825 1.202770 CCCTTGACGTTTTCTGACCCT 60.203 52.381 0.00 0.00 0.00 4.34
4358 4826 1.873591 CCTTGACGTTTTCTGACCCTG 59.126 52.381 0.00 0.00 0.00 4.45
4359 4827 1.873591 CTTGACGTTTTCTGACCCTGG 59.126 52.381 0.00 0.00 0.00 4.45
4360 4828 1.124780 TGACGTTTTCTGACCCTGGA 58.875 50.000 0.00 0.00 0.00 3.86
4361 4829 1.070134 TGACGTTTTCTGACCCTGGAG 59.930 52.381 0.00 0.00 0.00 3.86
4362 4830 1.343465 GACGTTTTCTGACCCTGGAGA 59.657 52.381 0.00 0.00 0.00 3.71
4363 4831 1.978580 ACGTTTTCTGACCCTGGAGAT 59.021 47.619 0.00 0.00 0.00 2.75
4364 4832 2.289694 ACGTTTTCTGACCCTGGAGATG 60.290 50.000 0.00 0.00 0.00 2.90
4365 4833 2.716217 GTTTTCTGACCCTGGAGATGG 58.284 52.381 0.00 0.00 0.00 3.51
4366 4834 2.040412 GTTTTCTGACCCTGGAGATGGT 59.960 50.000 0.00 0.00 37.64 3.55
4367 4835 2.044793 TTCTGACCCTGGAGATGGTT 57.955 50.000 0.00 0.00 34.20 3.67
4368 4836 2.044793 TCTGACCCTGGAGATGGTTT 57.955 50.000 0.00 0.00 34.20 3.27
4369 4837 3.199442 TCTGACCCTGGAGATGGTTTA 57.801 47.619 0.00 0.00 34.20 2.01
4370 4838 3.736094 TCTGACCCTGGAGATGGTTTAT 58.264 45.455 0.00 0.00 34.20 1.40
4371 4839 4.890988 TCTGACCCTGGAGATGGTTTATA 58.109 43.478 0.00 0.00 34.20 0.98
4372 4840 4.654262 TCTGACCCTGGAGATGGTTTATAC 59.346 45.833 0.00 0.00 34.20 1.47
4373 4841 3.714798 TGACCCTGGAGATGGTTTATACC 59.285 47.826 0.00 0.00 45.26 2.73
4374 4842 3.974642 GACCCTGGAGATGGTTTATACCT 59.025 47.826 3.89 0.00 45.27 3.08
4375 4843 4.380791 ACCCTGGAGATGGTTTATACCTT 58.619 43.478 3.89 0.00 45.27 3.50
4376 4844 4.794067 ACCCTGGAGATGGTTTATACCTTT 59.206 41.667 3.89 0.00 45.27 3.11
4377 4845 5.974370 ACCCTGGAGATGGTTTATACCTTTA 59.026 40.000 3.89 0.00 45.27 1.85
4378 4846 6.624021 ACCCTGGAGATGGTTTATACCTTTAT 59.376 38.462 3.89 0.00 45.27 1.40
4379 4847 7.130442 ACCCTGGAGATGGTTTATACCTTTATT 59.870 37.037 3.89 0.00 45.27 1.40
4380 4848 8.665906 CCCTGGAGATGGTTTATACCTTTATTA 58.334 37.037 3.89 0.00 45.27 0.98
4381 4849 9.503399 CCTGGAGATGGTTTATACCTTTATTAC 57.497 37.037 3.89 0.00 45.27 1.89
4402 4870 8.899427 ATTACTCATGTGAAAGACATAGATGG 57.101 34.615 0.94 0.00 43.96 3.51
4403 4871 6.305272 ACTCATGTGAAAGACATAGATGGT 57.695 37.500 0.94 0.00 43.96 3.55
4404 4872 6.111382 ACTCATGTGAAAGACATAGATGGTG 58.889 40.000 0.94 0.00 43.96 4.17
4405 4873 6.053632 TCATGTGAAAGACATAGATGGTGT 57.946 37.500 0.00 0.00 43.96 4.16
4406 4874 6.475504 TCATGTGAAAGACATAGATGGTGTT 58.524 36.000 0.00 0.00 43.96 3.32
4407 4875 7.619965 TCATGTGAAAGACATAGATGGTGTTA 58.380 34.615 0.00 0.00 43.96 2.41
4408 4876 7.765819 TCATGTGAAAGACATAGATGGTGTTAG 59.234 37.037 0.00 0.00 43.96 2.34
4409 4877 7.004555 TGTGAAAGACATAGATGGTGTTAGT 57.995 36.000 0.00 0.00 0.00 2.24
4410 4878 6.873605 TGTGAAAGACATAGATGGTGTTAGTG 59.126 38.462 0.00 0.00 0.00 2.74
4411 4879 7.097192 GTGAAAGACATAGATGGTGTTAGTGA 58.903 38.462 0.00 0.00 0.00 3.41
4412 4880 7.063544 GTGAAAGACATAGATGGTGTTAGTGAC 59.936 40.741 0.00 0.00 0.00 3.67
4413 4881 6.859112 AAGACATAGATGGTGTTAGTGACT 57.141 37.500 0.00 0.00 0.00 3.41
4414 4882 7.956328 AAGACATAGATGGTGTTAGTGACTA 57.044 36.000 0.00 0.00 0.00 2.59
4415 4883 8.540507 AAGACATAGATGGTGTTAGTGACTAT 57.459 34.615 0.00 0.00 0.00 2.12
4416 4884 8.540507 AGACATAGATGGTGTTAGTGACTATT 57.459 34.615 0.00 0.00 0.00 1.73
4417 4885 8.634444 AGACATAGATGGTGTTAGTGACTATTC 58.366 37.037 0.00 0.00 0.00 1.75
4418 4886 8.306313 ACATAGATGGTGTTAGTGACTATTCA 57.694 34.615 0.00 0.00 0.00 2.57
4419 4887 8.417106 ACATAGATGGTGTTAGTGACTATTCAG 58.583 37.037 0.00 0.00 30.10 3.02
4420 4888 5.665459 AGATGGTGTTAGTGACTATTCAGC 58.335 41.667 15.41 15.41 30.10 4.26
4421 4889 5.423610 AGATGGTGTTAGTGACTATTCAGCT 59.576 40.000 19.72 10.72 30.10 4.24
4422 4890 5.073311 TGGTGTTAGTGACTATTCAGCTC 57.927 43.478 19.72 7.25 30.10 4.09
4423 4891 4.772624 TGGTGTTAGTGACTATTCAGCTCT 59.227 41.667 19.72 0.00 30.10 4.09
4424 4892 5.246203 TGGTGTTAGTGACTATTCAGCTCTT 59.754 40.000 19.72 0.00 30.10 2.85
4425 4893 5.578727 GGTGTTAGTGACTATTCAGCTCTTG 59.421 44.000 15.17 0.00 30.10 3.02
4426 4894 5.062809 GTGTTAGTGACTATTCAGCTCTTGC 59.937 44.000 0.00 0.00 40.05 4.01
4427 4895 3.258971 AGTGACTATTCAGCTCTTGCC 57.741 47.619 0.00 0.00 40.80 4.52
4428 4896 2.836981 AGTGACTATTCAGCTCTTGCCT 59.163 45.455 0.00 0.00 40.80 4.75
4429 4897 3.118811 AGTGACTATTCAGCTCTTGCCTC 60.119 47.826 0.00 0.00 40.80 4.70
4430 4898 3.102972 TGACTATTCAGCTCTTGCCTCT 58.897 45.455 0.00 0.00 40.80 3.69
4431 4899 3.517100 TGACTATTCAGCTCTTGCCTCTT 59.483 43.478 0.00 0.00 40.80 2.85
4432 4900 3.870419 GACTATTCAGCTCTTGCCTCTTG 59.130 47.826 0.00 0.00 40.80 3.02
4433 4901 2.125773 ATTCAGCTCTTGCCTCTTGG 57.874 50.000 0.00 0.00 40.80 3.61
4443 4911 3.799753 CCTCTTGGCCGTCATTCG 58.200 61.111 0.00 0.00 39.52 3.34
4444 4912 2.464459 CCTCTTGGCCGTCATTCGC 61.464 63.158 0.00 0.00 38.35 4.70
4445 4913 2.435938 TCTTGGCCGTCATTCGCC 60.436 61.111 0.00 0.00 38.35 5.54
4446 4914 2.436646 CTTGGCCGTCATTCGCCT 60.437 61.111 0.00 0.00 36.93 5.52
4447 4915 2.435938 TTGGCCGTCATTCGCCTC 60.436 61.111 0.00 0.00 36.93 4.70
4448 4916 3.969250 TTGGCCGTCATTCGCCTCC 62.969 63.158 0.00 0.00 36.93 4.30
4449 4917 4.467084 GGCCGTCATTCGCCTCCA 62.467 66.667 0.00 0.00 38.35 3.86
4450 4918 2.435938 GCCGTCATTCGCCTCCAA 60.436 61.111 0.00 0.00 38.35 3.53
4451 4919 2.464459 GCCGTCATTCGCCTCCAAG 61.464 63.158 0.00 0.00 38.35 3.61
4452 4920 1.815421 CCGTCATTCGCCTCCAAGG 60.815 63.158 0.00 0.00 38.80 3.61
4453 4921 1.079127 CGTCATTCGCCTCCAAGGT 60.079 57.895 0.00 0.00 37.80 3.50
4460 4928 2.359975 GCCTCCAAGGTGAACCGG 60.360 66.667 0.00 0.00 42.08 5.28
4461 4929 2.359975 CCTCCAAGGTGAACCGGC 60.360 66.667 0.00 0.00 42.08 6.13
4462 4930 2.429930 CTCCAAGGTGAACCGGCA 59.570 61.111 0.00 0.00 42.08 5.69
4463 4931 1.228124 CTCCAAGGTGAACCGGCAA 60.228 57.895 0.00 0.00 42.08 4.52
4464 4932 1.515521 CTCCAAGGTGAACCGGCAAC 61.516 60.000 0.00 0.00 42.08 4.17
4465 4933 2.561037 CCAAGGTGAACCGGCAACC 61.561 63.158 11.87 11.87 42.08 3.77
4466 4934 1.528309 CAAGGTGAACCGGCAACCT 60.528 57.895 15.70 15.70 42.08 3.50
4467 4935 1.528309 AAGGTGAACCGGCAACCTG 60.528 57.895 20.63 0.00 42.08 4.00
4468 4936 2.203294 GGTGAACCGGCAACCTGT 60.203 61.111 0.00 0.00 0.00 4.00
4469 4937 1.826487 GGTGAACCGGCAACCTGTT 60.826 57.895 0.00 0.00 33.79 3.16
4470 4938 0.535553 GGTGAACCGGCAACCTGTTA 60.536 55.000 0.00 0.00 31.35 2.41
4471 4939 1.310904 GTGAACCGGCAACCTGTTAA 58.689 50.000 0.00 0.00 31.35 2.01
4472 4940 1.002142 GTGAACCGGCAACCTGTTAAC 60.002 52.381 0.00 0.00 31.35 2.01
4473 4941 1.134037 TGAACCGGCAACCTGTTAACT 60.134 47.619 0.00 0.00 31.35 2.24
4474 4942 1.265905 GAACCGGCAACCTGTTAACTG 59.734 52.381 0.00 6.33 31.35 3.16
4475 4943 0.470766 ACCGGCAACCTGTTAACTGA 59.529 50.000 13.56 0.00 0.00 3.41
4476 4944 0.872388 CCGGCAACCTGTTAACTGAC 59.128 55.000 13.56 1.34 0.00 3.51
4477 4945 0.511221 CGGCAACCTGTTAACTGACG 59.489 55.000 13.56 9.93 33.36 4.35
4478 4946 0.237498 GGCAACCTGTTAACTGACGC 59.763 55.000 13.56 11.62 0.00 5.19
4479 4947 0.941542 GCAACCTGTTAACTGACGCA 59.058 50.000 13.56 0.00 0.00 5.24
4480 4948 1.069906 GCAACCTGTTAACTGACGCAG 60.070 52.381 13.56 5.47 37.52 5.18
4481 4949 1.069906 CAACCTGTTAACTGACGCAGC 60.070 52.381 13.56 0.00 34.37 5.25
4482 4950 0.105964 ACCTGTTAACTGACGCAGCA 59.894 50.000 13.56 0.00 34.37 4.41
4483 4951 0.792640 CCTGTTAACTGACGCAGCAG 59.207 55.000 13.56 1.56 41.63 4.24
4484 4952 0.792640 CTGTTAACTGACGCAGCAGG 59.207 55.000 7.22 0.00 40.20 4.85
4485 4953 1.227999 TGTTAACTGACGCAGCAGGC 61.228 55.000 7.22 0.00 40.20 4.85
4486 4954 0.951040 GTTAACTGACGCAGCAGGCT 60.951 55.000 7.61 0.00 40.20 4.58
4487 4955 0.670546 TTAACTGACGCAGCAGGCTC 60.671 55.000 7.61 0.00 40.20 4.70
4488 4956 2.507110 TAACTGACGCAGCAGGCTCC 62.507 60.000 7.61 0.00 40.20 4.70
4489 4957 4.079850 CTGACGCAGCAGGCTCCT 62.080 66.667 0.00 0.00 41.67 3.69
4490 4958 3.602513 CTGACGCAGCAGGCTCCTT 62.603 63.158 0.00 0.00 41.67 3.36
4491 4959 2.817396 GACGCAGCAGGCTCCTTC 60.817 66.667 0.00 0.00 41.67 3.46
4492 4960 4.400961 ACGCAGCAGGCTCCTTCC 62.401 66.667 0.00 0.00 41.67 3.46
4493 4961 4.093291 CGCAGCAGGCTCCTTCCT 62.093 66.667 0.00 0.00 41.67 3.36
4494 4962 2.725312 CGCAGCAGGCTCCTTCCTA 61.725 63.158 0.00 0.00 41.67 2.94
4495 4963 1.604378 GCAGCAGGCTCCTTCCTAA 59.396 57.895 0.00 0.00 40.25 2.69
4496 4964 0.746204 GCAGCAGGCTCCTTCCTAAC 60.746 60.000 0.00 0.00 40.25 2.34
4497 4965 0.908198 CAGCAGGCTCCTTCCTAACT 59.092 55.000 0.00 0.00 33.95 2.24
4498 4966 0.908198 AGCAGGCTCCTTCCTAACTG 59.092 55.000 0.00 0.00 33.95 3.16
4499 4967 0.905357 GCAGGCTCCTTCCTAACTGA 59.095 55.000 0.00 0.00 33.95 3.41
4500 4968 1.279271 GCAGGCTCCTTCCTAACTGAA 59.721 52.381 0.00 0.00 33.95 3.02
4501 4969 2.290323 GCAGGCTCCTTCCTAACTGAAA 60.290 50.000 0.00 0.00 33.95 2.69
4502 4970 3.810743 GCAGGCTCCTTCCTAACTGAAAA 60.811 47.826 0.00 0.00 33.95 2.29
4503 4971 4.593956 CAGGCTCCTTCCTAACTGAAAAT 58.406 43.478 0.00 0.00 33.95 1.82
4504 4972 5.012893 CAGGCTCCTTCCTAACTGAAAATT 58.987 41.667 0.00 0.00 33.95 1.82
4505 4973 5.478332 CAGGCTCCTTCCTAACTGAAAATTT 59.522 40.000 0.00 0.00 33.95 1.82
4506 4974 6.015095 CAGGCTCCTTCCTAACTGAAAATTTT 60.015 38.462 2.28 2.28 33.95 1.82
4507 4975 6.209589 AGGCTCCTTCCTAACTGAAAATTTTC 59.790 38.462 21.60 21.60 33.95 2.29
4508 4976 6.086871 GCTCCTTCCTAACTGAAAATTTTCG 58.913 40.000 22.51 19.00 40.01 3.46
4509 4977 6.072673 GCTCCTTCCTAACTGAAAATTTTCGA 60.073 38.462 22.51 11.78 40.01 3.71
4510 4978 7.198306 TCCTTCCTAACTGAAAATTTTCGAC 57.802 36.000 22.51 4.10 40.01 4.20
4511 4979 6.073440 TCCTTCCTAACTGAAAATTTTCGACG 60.073 38.462 22.51 16.30 40.01 5.12
4512 4980 5.025986 TCCTAACTGAAAATTTTCGACGC 57.974 39.130 22.51 3.42 40.01 5.19
4513 4981 4.083696 TCCTAACTGAAAATTTTCGACGCC 60.084 41.667 22.51 2.76 40.01 5.68
4514 4982 2.699251 ACTGAAAATTTTCGACGCCC 57.301 45.000 22.51 2.09 40.01 6.13
4515 4983 2.227194 ACTGAAAATTTTCGACGCCCT 58.773 42.857 22.51 2.30 40.01 5.19
4516 4984 2.225727 ACTGAAAATTTTCGACGCCCTC 59.774 45.455 22.51 0.73 40.01 4.30
4517 4985 2.222886 TGAAAATTTTCGACGCCCTCA 58.777 42.857 22.51 3.27 40.01 3.86
4518 4986 2.031508 TGAAAATTTTCGACGCCCTCAC 60.032 45.455 22.51 0.00 40.01 3.51
4519 4987 0.515564 AAATTTTCGACGCCCTCACG 59.484 50.000 0.00 0.00 39.50 4.35
4520 4988 1.296056 AATTTTCGACGCCCTCACGG 61.296 55.000 0.00 0.00 37.37 4.94
4521 4989 2.162338 ATTTTCGACGCCCTCACGGA 62.162 55.000 0.00 0.00 37.37 4.69
4522 4990 2.758770 TTTTCGACGCCCTCACGGAG 62.759 60.000 0.00 0.00 37.37 4.63
4537 5005 4.945246 TCACGGAGGAAGTGATAAATAGC 58.055 43.478 0.00 0.00 42.91 2.97
4538 5006 4.649674 TCACGGAGGAAGTGATAAATAGCT 59.350 41.667 0.00 0.00 42.91 3.32
4539 5007 5.128827 TCACGGAGGAAGTGATAAATAGCTT 59.871 40.000 0.00 0.00 42.91 3.74
4540 5008 6.322969 TCACGGAGGAAGTGATAAATAGCTTA 59.677 38.462 0.00 0.00 42.91 3.09
4541 5009 7.015292 TCACGGAGGAAGTGATAAATAGCTTAT 59.985 37.037 0.00 0.00 42.91 1.73
4542 5010 7.657761 CACGGAGGAAGTGATAAATAGCTTATT 59.342 37.037 0.00 0.00 41.83 1.40
4543 5011 7.873505 ACGGAGGAAGTGATAAATAGCTTATTC 59.126 37.037 0.00 0.00 29.89 1.75
4544 5012 7.872993 CGGAGGAAGTGATAAATAGCTTATTCA 59.127 37.037 0.00 0.00 29.89 2.57
4545 5013 9.732130 GGAGGAAGTGATAAATAGCTTATTCAT 57.268 33.333 0.00 0.00 29.89 2.57
4549 5017 9.604626 GAAGTGATAAATAGCTTATTCATGTGC 57.395 33.333 0.00 0.00 29.89 4.57
4550 5018 8.681486 AGTGATAAATAGCTTATTCATGTGCA 57.319 30.769 0.00 0.00 29.89 4.57
4551 5019 9.293404 AGTGATAAATAGCTTATTCATGTGCAT 57.707 29.630 0.00 0.00 29.89 3.96
4552 5020 9.552114 GTGATAAATAGCTTATTCATGTGCATC 57.448 33.333 0.00 0.00 29.89 3.91
4553 5021 9.287373 TGATAAATAGCTTATTCATGTGCATCA 57.713 29.630 0.00 0.00 29.89 3.07
4571 5039 9.478768 TGTGCATCATGGCTATTTATTTATTTG 57.521 29.630 0.00 0.00 34.04 2.32
4572 5040 8.437742 GTGCATCATGGCTATTTATTTATTTGC 58.562 33.333 0.00 0.00 34.04 3.68
4573 5041 7.603404 TGCATCATGGCTATTTATTTATTTGCC 59.397 33.333 0.00 0.00 39.33 4.52
4580 5048 9.732130 TGGCTATTTATTTATTTGCCAAAGTTT 57.268 25.926 0.00 0.00 44.67 2.66
4589 5057 8.770438 TTTATTTGCCAAAGTTTATCATGGAC 57.230 30.769 0.00 0.00 34.82 4.02
4590 5058 4.799564 TTGCCAAAGTTTATCATGGACC 57.200 40.909 0.00 0.00 34.82 4.46
4591 5059 4.046286 TGCCAAAGTTTATCATGGACCT 57.954 40.909 0.00 0.00 34.82 3.85
4592 5060 4.415596 TGCCAAAGTTTATCATGGACCTT 58.584 39.130 0.00 0.00 34.82 3.50
4593 5061 4.837860 TGCCAAAGTTTATCATGGACCTTT 59.162 37.500 0.00 0.00 34.82 3.11
4594 5062 5.306678 TGCCAAAGTTTATCATGGACCTTTT 59.693 36.000 0.00 0.00 34.82 2.27
4595 5063 6.495181 TGCCAAAGTTTATCATGGACCTTTTA 59.505 34.615 0.00 0.00 34.82 1.52
4596 5064 7.015682 TGCCAAAGTTTATCATGGACCTTTTAA 59.984 33.333 0.00 0.00 34.82 1.52
4597 5065 7.330946 GCCAAAGTTTATCATGGACCTTTTAAC 59.669 37.037 0.00 0.00 34.82 2.01
4598 5066 8.585018 CCAAAGTTTATCATGGACCTTTTAACT 58.415 33.333 0.00 0.00 34.82 2.24
4599 5067 9.626045 CAAAGTTTATCATGGACCTTTTAACTC 57.374 33.333 0.00 0.00 0.00 3.01
4600 5068 8.934023 AAGTTTATCATGGACCTTTTAACTCA 57.066 30.769 0.00 0.00 0.00 3.41
4601 5069 8.567285 AGTTTATCATGGACCTTTTAACTCAG 57.433 34.615 0.00 0.00 0.00 3.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 9.981460 CCCTAGAGGCAATAATAAAAGGATTAT 57.019 33.333 0.00 0.00 34.18 1.28
40 41 4.437682 TGTTGGAAATATGCCCTAGAGG 57.562 45.455 0.00 0.00 39.47 3.69
41 42 5.180117 CGAATGTTGGAAATATGCCCTAGAG 59.820 44.000 0.00 0.00 0.00 2.43
42 43 5.063204 CGAATGTTGGAAATATGCCCTAGA 58.937 41.667 0.00 0.00 0.00 2.43
43 44 4.216257 CCGAATGTTGGAAATATGCCCTAG 59.784 45.833 0.00 0.00 0.00 3.02
44 45 4.141287 CCGAATGTTGGAAATATGCCCTA 58.859 43.478 0.00 0.00 0.00 3.53
45 46 2.958355 CCGAATGTTGGAAATATGCCCT 59.042 45.455 0.00 0.00 0.00 5.19
46 47 2.035832 CCCGAATGTTGGAAATATGCCC 59.964 50.000 0.00 0.00 0.00 5.36
47 48 2.955660 TCCCGAATGTTGGAAATATGCC 59.044 45.455 0.00 0.00 0.00 4.40
48 49 3.550842 GCTCCCGAATGTTGGAAATATGC 60.551 47.826 0.00 0.00 0.00 3.14
49 50 3.885297 AGCTCCCGAATGTTGGAAATATG 59.115 43.478 0.00 0.00 0.00 1.78
50 51 3.885297 CAGCTCCCGAATGTTGGAAATAT 59.115 43.478 0.00 0.00 0.00 1.28
51 52 3.278574 CAGCTCCCGAATGTTGGAAATA 58.721 45.455 0.00 0.00 0.00 1.40
52 53 2.094675 CAGCTCCCGAATGTTGGAAAT 58.905 47.619 0.00 0.00 0.00 2.17
53 54 1.533625 CAGCTCCCGAATGTTGGAAA 58.466 50.000 0.00 0.00 0.00 3.13
54 55 0.960364 GCAGCTCCCGAATGTTGGAA 60.960 55.000 0.00 0.00 0.00 3.53
55 56 1.377202 GCAGCTCCCGAATGTTGGA 60.377 57.895 0.00 0.00 0.00 3.53
56 57 1.377725 AGCAGCTCCCGAATGTTGG 60.378 57.895 0.00 0.00 0.00 3.77
57 58 1.798735 CAGCAGCTCCCGAATGTTG 59.201 57.895 0.00 0.00 0.00 3.33
58 59 2.042831 GCAGCAGCTCCCGAATGTT 61.043 57.895 0.00 0.00 37.91 2.71
59 60 2.437359 GCAGCAGCTCCCGAATGT 60.437 61.111 0.00 0.00 37.91 2.71
60 61 2.437180 TGCAGCAGCTCCCGAATG 60.437 61.111 1.76 0.00 42.74 2.67
61 62 2.124819 CTGCAGCAGCTCCCGAAT 60.125 61.111 10.14 0.00 42.74 3.34
329 330 2.104281 GGGTGAGGTCGTTGGCTATATT 59.896 50.000 0.00 0.00 0.00 1.28
449 676 1.476845 TACCGATGGTGTGGTGCTGT 61.477 55.000 0.00 0.00 39.30 4.40
589 848 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
590 849 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
591 850 1.152510 TCACACACACACACACACAC 58.847 50.000 0.00 0.00 0.00 3.82
592 851 1.736681 CATCACACACACACACACACA 59.263 47.619 0.00 0.00 0.00 3.72
593 852 1.737236 ACATCACACACACACACACAC 59.263 47.619 0.00 0.00 0.00 3.82
594 853 1.736681 CACATCACACACACACACACA 59.263 47.619 0.00 0.00 0.00 3.72
595 854 1.531677 GCACATCACACACACACACAC 60.532 52.381 0.00 0.00 0.00 3.82
596 855 0.731994 GCACATCACACACACACACA 59.268 50.000 0.00 0.00 0.00 3.72
597 856 0.316114 CGCACATCACACACACACAC 60.316 55.000 0.00 0.00 0.00 3.82
598 857 1.435408 CCGCACATCACACACACACA 61.435 55.000 0.00 0.00 0.00 3.72
646 915 2.563620 GTTCTCTCGTTCTTCTTCCCCT 59.436 50.000 0.00 0.00 0.00 4.79
661 930 1.309499 CGCCCTCACTCTCGTTCTCT 61.309 60.000 0.00 0.00 0.00 3.10
666 935 4.057428 GCACGCCCTCACTCTCGT 62.057 66.667 0.00 0.00 35.35 4.18
669 938 4.057428 GTCGCACGCCCTCACTCT 62.057 66.667 0.00 0.00 0.00 3.24
685 954 1.227853 GGGCCTCGACAAACTGTGT 60.228 57.895 0.84 0.00 45.74 3.72
727 996 2.212869 TTTGAAGCACTGTACGACGT 57.787 45.000 5.52 5.52 0.00 4.34
730 999 5.270083 CACAATTTTTGAAGCACTGTACGA 58.730 37.500 0.00 0.00 0.00 3.43
750 1019 1.199789 GTCGCTGGATCATTTTGCACA 59.800 47.619 0.00 0.00 0.00 4.57
766 1035 2.805353 ACACGCGTCATCTGTCGC 60.805 61.111 9.86 10.97 46.08 5.19
788 1057 1.071699 ACGTGTGGTGTTTAGCATCCT 59.928 47.619 0.00 0.00 36.58 3.24
855 1134 2.689471 TGCAATGGCTGGTGATACATTC 59.311 45.455 0.00 0.00 41.91 2.67
861 1140 1.180029 GACTTGCAATGGCTGGTGAT 58.820 50.000 0.00 0.00 41.91 3.06
951 1235 2.203422 CCGTTTTGGTGGGCCTGA 60.203 61.111 4.53 0.00 35.27 3.86
979 1263 3.143728 TCTTTTACCCCTTTCTTGTCGC 58.856 45.455 0.00 0.00 0.00 5.19
1119 1404 1.154169 CGACACGTACGCCTTAGCA 60.154 57.895 16.72 0.00 39.83 3.49
1314 1599 5.104776 CCTCTTACATCTGGTCAGAATCCAA 60.105 44.000 4.67 0.00 41.36 3.53
1317 1602 5.127845 TGTCCTCTTACATCTGGTCAGAATC 59.872 44.000 4.67 0.00 41.36 2.52
1334 1619 1.326213 CGCCATCAGGTCTGTCCTCT 61.326 60.000 0.00 0.00 46.24 3.69
1340 1625 0.107993 ACACATCGCCATCAGGTCTG 60.108 55.000 0.00 0.00 37.19 3.51
1435 1720 2.624838 CCCAATAATGTTAGCAGGGCAG 59.375 50.000 0.00 0.00 0.00 4.85
1438 1723 7.004086 TCTAAATCCCAATAATGTTAGCAGGG 58.996 38.462 0.00 0.00 36.15 4.45
1440 1725 7.229306 TGCTCTAAATCCCAATAATGTTAGCAG 59.771 37.037 0.00 0.00 30.86 4.24
1443 1728 9.071276 ACATGCTCTAAATCCCAATAATGTTAG 57.929 33.333 0.00 0.00 0.00 2.34
1451 1736 9.726438 GTATAACTACATGCTCTAAATCCCAAT 57.274 33.333 0.00 0.00 0.00 3.16
1462 1793 9.088512 GCAATACATAGGTATAACTACATGCTC 57.911 37.037 0.00 0.00 39.28 4.26
1505 1837 6.834168 TTTCAACACTTCAAAGTCCTCTTT 57.166 33.333 0.00 0.00 43.66 2.52
1509 1841 5.449553 AGGATTTCAACACTTCAAAGTCCT 58.550 37.500 0.00 0.00 37.08 3.85
1540 1935 3.485947 TGATCCATGCTAAAAACGTGC 57.514 42.857 0.00 0.00 0.00 5.34
1561 1957 3.631145 GCAAGATGCACACTTCTCAAA 57.369 42.857 5.20 0.00 44.26 2.69
1614 2010 6.147164 CCTTAAACAAGAACAGCGATCTACAA 59.853 38.462 0.00 0.00 0.00 2.41
1622 2018 5.169836 ACTTTCCTTAAACAAGAACAGCG 57.830 39.130 0.00 0.00 0.00 5.18
1649 2045 5.472148 ACACATTGTATGGCAAATGACAAG 58.528 37.500 15.35 8.93 40.91 3.16
1667 2063 5.593968 CAGGCAAATACAATGCATACACAT 58.406 37.500 0.00 0.00 45.60 3.21
1671 2067 4.046462 CAGCAGGCAAATACAATGCATAC 58.954 43.478 0.00 0.00 45.60 2.39
1681 2077 5.707764 TGTACAATACAACAGCAGGCAAATA 59.292 36.000 0.00 0.00 35.38 1.40
1685 2081 3.073678 CTGTACAATACAACAGCAGGCA 58.926 45.455 0.00 0.00 38.38 4.75
1688 2084 4.065088 ACACCTGTACAATACAACAGCAG 58.935 43.478 0.00 0.00 41.45 4.24
1691 2087 5.700832 ACATGACACCTGTACAATACAACAG 59.299 40.000 0.00 0.00 42.25 3.16
1782 2178 5.126384 TCAAGGTTACCAAAACTTCCAACAG 59.874 40.000 3.51 0.00 40.76 3.16
1786 2182 4.211920 CCTCAAGGTTACCAAAACTTCCA 58.788 43.478 3.51 0.00 40.76 3.53
1822 2221 6.770286 ATGGGTCATCTATCCTGTACAAAT 57.230 37.500 0.00 0.00 0.00 2.32
1844 2243 4.625225 ACCCTTGAATCCCCACATAAAT 57.375 40.909 0.00 0.00 0.00 1.40
2050 2453 6.877855 AGCTCACTATGCCTACATGATTAATG 59.122 38.462 0.00 0.00 42.48 1.90
2080 2483 0.954452 GCAAGTGAGAGTGGGGTTTG 59.046 55.000 0.00 0.00 0.00 2.93
2123 2539 3.334583 TCTGAATTGACCTACAGTGGC 57.665 47.619 0.00 0.00 0.00 5.01
2127 2543 9.334947 ACATTTCATATCTGAATTGACCTACAG 57.665 33.333 17.58 0.00 41.81 2.74
2128 2544 9.685276 AACATTTCATATCTGAATTGACCTACA 57.315 29.630 17.58 0.00 41.81 2.74
2155 2571 4.101119 GCCATTAACTAGCTCCACTAAGGA 59.899 45.833 0.00 0.00 46.75 3.36
2192 2608 8.285891 ACTGGATTAAATGGGGTTATTACATGA 58.714 33.333 0.00 0.00 0.00 3.07
2250 2666 5.779529 TGTTAGAACTACGAAGGTTGTCT 57.220 39.130 0.00 0.00 30.77 3.41
2321 2737 3.055747 AGCTTGTCTTGGTAGTTAGAGGC 60.056 47.826 0.00 0.00 0.00 4.70
2322 2738 4.810191 AGCTTGTCTTGGTAGTTAGAGG 57.190 45.455 0.00 0.00 0.00 3.69
2323 2739 5.784177 TGAAGCTTGTCTTGGTAGTTAGAG 58.216 41.667 2.10 0.00 34.56 2.43
2324 2740 5.538813 TCTGAAGCTTGTCTTGGTAGTTAGA 59.461 40.000 2.10 0.00 34.56 2.10
2325 2741 5.784177 TCTGAAGCTTGTCTTGGTAGTTAG 58.216 41.667 2.10 0.00 34.56 2.34
2326 2742 5.801531 TCTGAAGCTTGTCTTGGTAGTTA 57.198 39.130 2.10 0.00 34.56 2.24
2327 2743 4.689612 TCTGAAGCTTGTCTTGGTAGTT 57.310 40.909 2.10 0.00 34.56 2.24
2328 2744 4.689612 TTCTGAAGCTTGTCTTGGTAGT 57.310 40.909 2.10 0.00 34.56 2.73
2339 2755 4.273318 ACAGGTTTGACTTTCTGAAGCTT 58.727 39.130 0.00 0.00 36.29 3.74
2549 3008 7.171678 ACATCAAAAGTAGCAGTTGAACTAGAC 59.828 37.037 0.00 0.00 35.07 2.59
2560 3019 4.214971 AGTGCTGAACATCAAAAGTAGCAG 59.785 41.667 0.00 0.00 39.97 4.24
2630 3089 3.743899 GCCTTGCAATGAAACCCTGAAAA 60.744 43.478 5.85 0.00 0.00 2.29
2818 3277 7.156876 TGGAATAGTTAATGCTGAACCAAAG 57.843 36.000 0.00 0.00 0.00 2.77
2819 3278 7.395772 TGATGGAATAGTTAATGCTGAACCAAA 59.604 33.333 0.00 0.00 0.00 3.28
2955 3415 2.009774 CGTCTGATTGGTTGGTGATCC 58.990 52.381 0.00 0.00 0.00 3.36
3007 3467 0.252197 ATTGGAGTTACGGGTGCTCC 59.748 55.000 13.74 13.74 46.61 4.70
3028 3488 7.833285 AACCAGTGTGAACAATAGGTAAAAT 57.167 32.000 5.77 0.00 29.88 1.82
3082 3542 3.446161 ACACAAAATGATGGCATCTCAGG 59.554 43.478 26.49 14.91 32.35 3.86
3193 3655 8.083828 AGTGGTTTACTGAATATGAGACAGAT 57.916 34.615 0.00 0.00 38.49 2.90
3202 3664 7.907389 TCTGAGTCAAGTGGTTTACTGAATAT 58.093 34.615 0.00 0.00 40.26 1.28
3203 3665 7.297936 TCTGAGTCAAGTGGTTTACTGAATA 57.702 36.000 0.00 0.00 40.26 1.75
3204 3666 6.174720 TCTGAGTCAAGTGGTTTACTGAAT 57.825 37.500 0.00 0.00 40.26 2.57
3226 3688 7.573968 AGGGAATACAAATGAAATAGTGCTC 57.426 36.000 0.00 0.00 0.00 4.26
3259 3721 8.391075 ACCATATAACATAAACGAGATTTGGG 57.609 34.615 0.00 0.00 0.00 4.12
3310 3777 4.842531 TGATTTCTCTGGCATGACCTAA 57.157 40.909 0.00 0.00 40.22 2.69
3555 4023 2.499289 GTCTTCCTCAAGCTCTCCATCA 59.501 50.000 0.00 0.00 0.00 3.07
3696 4164 7.554118 CCCATCATCTGAAACTAGCTAAGAAAA 59.446 37.037 0.00 0.00 0.00 2.29
3700 4168 6.166984 TCCCATCATCTGAAACTAGCTAAG 57.833 41.667 0.00 0.00 0.00 2.18
3728 4196 3.006537 CGTATCCTCCCAATCACCGTATT 59.993 47.826 0.00 0.00 0.00 1.89
4131 4599 7.930325 CAGCCTGAATACTCTTGATATCTCAAA 59.070 37.037 3.98 0.00 40.78 2.69
4132 4600 7.070447 ACAGCCTGAATACTCTTGATATCTCAA 59.930 37.037 0.00 0.00 39.07 3.02
4133 4601 6.552725 ACAGCCTGAATACTCTTGATATCTCA 59.447 38.462 0.00 0.00 0.00 3.27
4134 4602 6.991938 ACAGCCTGAATACTCTTGATATCTC 58.008 40.000 0.00 0.00 0.00 2.75
4135 4603 6.992664 ACAGCCTGAATACTCTTGATATCT 57.007 37.500 0.00 0.00 0.00 1.98
4136 4604 6.073331 GCAACAGCCTGAATACTCTTGATATC 60.073 42.308 0.00 0.00 0.00 1.63
4137 4605 5.762218 GCAACAGCCTGAATACTCTTGATAT 59.238 40.000 0.00 0.00 0.00 1.63
4138 4606 5.118990 GCAACAGCCTGAATACTCTTGATA 58.881 41.667 0.00 0.00 0.00 2.15
4139 4607 3.944015 GCAACAGCCTGAATACTCTTGAT 59.056 43.478 0.00 0.00 0.00 2.57
4140 4608 3.338249 GCAACAGCCTGAATACTCTTGA 58.662 45.455 0.00 0.00 0.00 3.02
4176 4644 0.894835 AATGGCAATCCGGTCCAAAC 59.105 50.000 0.00 0.00 33.04 2.93
4186 4654 3.249986 TGGCTAAGCAAAATGGCAATC 57.750 42.857 0.00 0.00 35.83 2.67
4199 4667 2.479566 TGAGCAGTTCCTTGGCTAAG 57.520 50.000 2.20 2.20 38.15 2.18
4216 4684 8.416329 TCACGAGATCATGAAAAATCTCTATGA 58.584 33.333 17.69 16.95 43.72 2.15
4232 4700 8.863872 TGGAGTAGATAATAATCACGAGATCA 57.136 34.615 0.00 0.00 34.28 2.92
4285 4753 9.273016 CCGTATGTAGTCCATATTGAAAAATCT 57.727 33.333 0.00 0.00 38.29 2.40
4286 4754 9.268268 TCCGTATGTAGTCCATATTGAAAAATC 57.732 33.333 0.00 0.00 38.29 2.17
4287 4755 9.273016 CTCCGTATGTAGTCCATATTGAAAAAT 57.727 33.333 0.00 0.00 38.29 1.82
4288 4756 7.225931 GCTCCGTATGTAGTCCATATTGAAAAA 59.774 37.037 0.00 0.00 38.29 1.94
4289 4757 6.704493 GCTCCGTATGTAGTCCATATTGAAAA 59.296 38.462 0.00 0.00 38.29 2.29
4290 4758 6.183360 TGCTCCGTATGTAGTCCATATTGAAA 60.183 38.462 0.00 0.00 38.29 2.69
4291 4759 5.303333 TGCTCCGTATGTAGTCCATATTGAA 59.697 40.000 0.00 0.00 38.29 2.69
4292 4760 4.830600 TGCTCCGTATGTAGTCCATATTGA 59.169 41.667 0.00 0.00 38.29 2.57
4293 4761 5.134202 TGCTCCGTATGTAGTCCATATTG 57.866 43.478 0.00 0.00 38.29 1.90
4294 4762 5.801531 TTGCTCCGTATGTAGTCCATATT 57.198 39.130 0.00 0.00 38.29 1.28
4295 4763 5.801531 TTTGCTCCGTATGTAGTCCATAT 57.198 39.130 0.00 0.00 38.29 1.78
4296 4764 5.601583 TTTTGCTCCGTATGTAGTCCATA 57.398 39.130 0.00 0.00 34.86 2.74
4297 4765 4.481368 TTTTGCTCCGTATGTAGTCCAT 57.519 40.909 0.00 0.00 37.58 3.41
4298 4766 3.965379 TTTTGCTCCGTATGTAGTCCA 57.035 42.857 0.00 0.00 0.00 4.02
4299 4767 4.189231 ACATTTTGCTCCGTATGTAGTCC 58.811 43.478 0.00 0.00 29.93 3.85
4300 4768 5.005779 CAGACATTTTGCTCCGTATGTAGTC 59.994 44.000 0.00 0.00 31.76 2.59
4301 4769 4.870426 CAGACATTTTGCTCCGTATGTAGT 59.130 41.667 0.00 0.00 31.76 2.73
4302 4770 5.109210 TCAGACATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 31.76 2.74
4303 4771 5.079689 TCAGACATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 31.76 2.29
4304 4772 3.937814 TCAGACATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 34.14 2.29
4305 4773 4.728882 GCTTCAGACATTTTGCTCCGTATG 60.729 45.833 0.00 0.00 0.00 2.39
4306 4774 3.375299 GCTTCAGACATTTTGCTCCGTAT 59.625 43.478 0.00 0.00 0.00 3.06
4307 4775 2.742053 GCTTCAGACATTTTGCTCCGTA 59.258 45.455 0.00 0.00 0.00 4.02
4308 4776 1.537202 GCTTCAGACATTTTGCTCCGT 59.463 47.619 0.00 0.00 0.00 4.69
4309 4777 1.135575 GGCTTCAGACATTTTGCTCCG 60.136 52.381 0.00 0.00 0.00 4.63
4310 4778 2.165998 AGGCTTCAGACATTTTGCTCC 58.834 47.619 0.00 0.00 0.00 4.70
4311 4779 5.376854 TTTAGGCTTCAGACATTTTGCTC 57.623 39.130 0.00 0.00 0.00 4.26
4312 4780 5.713861 AGATTTAGGCTTCAGACATTTTGCT 59.286 36.000 0.00 0.00 0.00 3.91
4313 4781 5.958955 AGATTTAGGCTTCAGACATTTTGC 58.041 37.500 0.00 0.00 0.00 3.68
4314 4782 6.405176 GGGAGATTTAGGCTTCAGACATTTTG 60.405 42.308 0.00 0.00 0.00 2.44
4315 4783 5.654209 GGGAGATTTAGGCTTCAGACATTTT 59.346 40.000 0.00 0.00 0.00 1.82
4316 4784 5.044550 AGGGAGATTTAGGCTTCAGACATTT 60.045 40.000 0.00 0.00 0.00 2.32
4317 4785 4.476479 AGGGAGATTTAGGCTTCAGACATT 59.524 41.667 0.00 0.00 0.00 2.71
4318 4786 4.043596 AGGGAGATTTAGGCTTCAGACAT 58.956 43.478 0.00 0.00 0.00 3.06
4319 4787 3.454858 AGGGAGATTTAGGCTTCAGACA 58.545 45.455 0.00 0.00 0.00 3.41
4320 4788 4.080863 TCAAGGGAGATTTAGGCTTCAGAC 60.081 45.833 0.00 0.00 0.00 3.51
4321 4789 4.080863 GTCAAGGGAGATTTAGGCTTCAGA 60.081 45.833 0.00 0.00 0.00 3.27
4322 4790 4.195416 GTCAAGGGAGATTTAGGCTTCAG 58.805 47.826 0.00 0.00 0.00 3.02
4323 4791 3.369471 CGTCAAGGGAGATTTAGGCTTCA 60.369 47.826 0.00 0.00 0.00 3.02
4324 4792 3.198872 CGTCAAGGGAGATTTAGGCTTC 58.801 50.000 0.00 0.00 0.00 3.86
4325 4793 2.572104 ACGTCAAGGGAGATTTAGGCTT 59.428 45.455 0.00 0.00 0.00 4.35
4326 4794 2.188817 ACGTCAAGGGAGATTTAGGCT 58.811 47.619 0.00 0.00 0.00 4.58
4327 4795 2.693267 ACGTCAAGGGAGATTTAGGC 57.307 50.000 0.00 0.00 0.00 3.93
4328 4796 5.122396 CAGAAAACGTCAAGGGAGATTTAGG 59.878 44.000 0.00 0.00 0.00 2.69
4329 4797 5.932303 TCAGAAAACGTCAAGGGAGATTTAG 59.068 40.000 0.00 0.00 0.00 1.85
4330 4798 5.699458 GTCAGAAAACGTCAAGGGAGATTTA 59.301 40.000 0.00 0.00 0.00 1.40
4331 4799 4.515567 GTCAGAAAACGTCAAGGGAGATTT 59.484 41.667 0.00 0.00 0.00 2.17
4332 4800 4.065789 GTCAGAAAACGTCAAGGGAGATT 58.934 43.478 0.00 0.00 0.00 2.40
4333 4801 3.557264 GGTCAGAAAACGTCAAGGGAGAT 60.557 47.826 0.00 0.00 0.00 2.75
4334 4802 2.224209 GGTCAGAAAACGTCAAGGGAGA 60.224 50.000 0.00 0.00 0.00 3.71
4335 4803 2.143925 GGTCAGAAAACGTCAAGGGAG 58.856 52.381 0.00 0.00 0.00 4.30
4336 4804 1.202722 GGGTCAGAAAACGTCAAGGGA 60.203 52.381 0.00 0.00 0.00 4.20
4337 4805 1.202770 AGGGTCAGAAAACGTCAAGGG 60.203 52.381 0.00 0.00 0.00 3.95
4338 4806 1.873591 CAGGGTCAGAAAACGTCAAGG 59.126 52.381 0.00 0.00 0.00 3.61
4339 4807 1.873591 CCAGGGTCAGAAAACGTCAAG 59.126 52.381 0.00 0.00 0.00 3.02
4340 4808 1.487142 TCCAGGGTCAGAAAACGTCAA 59.513 47.619 0.00 0.00 0.00 3.18
4341 4809 1.070134 CTCCAGGGTCAGAAAACGTCA 59.930 52.381 0.00 0.00 0.00 4.35
4342 4810 1.343465 TCTCCAGGGTCAGAAAACGTC 59.657 52.381 0.00 0.00 0.00 4.34
4343 4811 1.420430 TCTCCAGGGTCAGAAAACGT 58.580 50.000 0.00 0.00 0.00 3.99
4344 4812 2.350522 CATCTCCAGGGTCAGAAAACG 58.649 52.381 0.00 0.00 0.00 3.60
4345 4813 2.040412 ACCATCTCCAGGGTCAGAAAAC 59.960 50.000 0.00 0.00 29.34 2.43
4346 4814 2.348472 ACCATCTCCAGGGTCAGAAAA 58.652 47.619 0.00 0.00 29.34 2.29
4347 4815 2.044793 ACCATCTCCAGGGTCAGAAA 57.955 50.000 0.00 0.00 29.34 2.52
4348 4816 2.044793 AACCATCTCCAGGGTCAGAA 57.955 50.000 0.00 0.00 36.05 3.02
4349 4817 2.044793 AAACCATCTCCAGGGTCAGA 57.955 50.000 0.00 0.00 36.05 3.27
4350 4818 4.202367 GGTATAAACCATCTCCAGGGTCAG 60.202 50.000 0.00 0.00 45.98 3.51
4351 4819 3.714798 GGTATAAACCATCTCCAGGGTCA 59.285 47.826 0.00 0.00 45.98 4.02
4352 4820 4.353383 GGTATAAACCATCTCCAGGGTC 57.647 50.000 0.00 0.00 45.98 4.46
4376 4844 9.987272 CCATCTATGTCTTTCACATGAGTAATA 57.013 33.333 0.00 0.00 45.98 0.98
4377 4845 8.489489 ACCATCTATGTCTTTCACATGAGTAAT 58.511 33.333 0.00 0.00 45.98 1.89
4378 4846 7.765819 CACCATCTATGTCTTTCACATGAGTAA 59.234 37.037 0.00 0.00 45.98 2.24
4379 4847 7.093333 ACACCATCTATGTCTTTCACATGAGTA 60.093 37.037 0.00 0.00 45.98 2.59
4380 4848 6.111382 CACCATCTATGTCTTTCACATGAGT 58.889 40.000 0.00 0.00 45.98 3.41
4381 4849 6.111382 ACACCATCTATGTCTTTCACATGAG 58.889 40.000 0.00 0.00 45.98 2.90
4382 4850 6.053632 ACACCATCTATGTCTTTCACATGA 57.946 37.500 0.00 0.00 45.98 3.07
4383 4851 6.748333 AACACCATCTATGTCTTTCACATG 57.252 37.500 0.00 0.00 45.98 3.21
4385 4853 6.873605 CACTAACACCATCTATGTCTTTCACA 59.126 38.462 0.00 0.00 40.18 3.58
4386 4854 7.063544 GTCACTAACACCATCTATGTCTTTCAC 59.936 40.741 0.00 0.00 0.00 3.18
4387 4855 7.039011 AGTCACTAACACCATCTATGTCTTTCA 60.039 37.037 0.00 0.00 0.00 2.69
4388 4856 7.324178 AGTCACTAACACCATCTATGTCTTTC 58.676 38.462 0.00 0.00 0.00 2.62
4389 4857 7.246171 AGTCACTAACACCATCTATGTCTTT 57.754 36.000 0.00 0.00 0.00 2.52
4390 4858 6.859112 AGTCACTAACACCATCTATGTCTT 57.141 37.500 0.00 0.00 0.00 3.01
4391 4859 8.540507 AATAGTCACTAACACCATCTATGTCT 57.459 34.615 0.00 0.00 0.00 3.41
4392 4860 8.414003 TGAATAGTCACTAACACCATCTATGTC 58.586 37.037 0.00 0.00 0.00 3.06
4393 4861 8.306313 TGAATAGTCACTAACACCATCTATGT 57.694 34.615 0.00 0.00 0.00 2.29
4394 4862 7.383572 GCTGAATAGTCACTAACACCATCTATG 59.616 40.741 0.00 0.00 0.00 2.23
4395 4863 7.288852 AGCTGAATAGTCACTAACACCATCTAT 59.711 37.037 0.00 0.00 0.00 1.98
4396 4864 6.607600 AGCTGAATAGTCACTAACACCATCTA 59.392 38.462 0.00 0.00 0.00 1.98
4397 4865 5.423610 AGCTGAATAGTCACTAACACCATCT 59.576 40.000 0.00 0.00 0.00 2.90
4398 4866 5.665459 AGCTGAATAGTCACTAACACCATC 58.335 41.667 0.00 0.00 0.00 3.51
4399 4867 5.423610 AGAGCTGAATAGTCACTAACACCAT 59.576 40.000 0.00 0.00 0.00 3.55
4400 4868 4.772624 AGAGCTGAATAGTCACTAACACCA 59.227 41.667 0.00 0.00 0.00 4.17
4401 4869 5.331876 AGAGCTGAATAGTCACTAACACC 57.668 43.478 0.00 0.00 0.00 4.16
4402 4870 5.062809 GCAAGAGCTGAATAGTCACTAACAC 59.937 44.000 0.00 0.00 37.91 3.32
4403 4871 5.171476 GCAAGAGCTGAATAGTCACTAACA 58.829 41.667 0.00 0.00 37.91 2.41
4404 4872 4.568760 GGCAAGAGCTGAATAGTCACTAAC 59.431 45.833 0.00 0.00 41.70 2.34
4405 4873 4.467795 AGGCAAGAGCTGAATAGTCACTAA 59.532 41.667 0.00 0.00 41.70 2.24
4406 4874 4.026744 AGGCAAGAGCTGAATAGTCACTA 58.973 43.478 0.00 0.00 41.70 2.74
4407 4875 2.836981 AGGCAAGAGCTGAATAGTCACT 59.163 45.455 0.00 0.00 41.70 3.41
4408 4876 3.118811 AGAGGCAAGAGCTGAATAGTCAC 60.119 47.826 0.00 0.00 41.70 3.67
4409 4877 3.102972 AGAGGCAAGAGCTGAATAGTCA 58.897 45.455 0.00 0.00 41.70 3.41
4410 4878 3.817709 AGAGGCAAGAGCTGAATAGTC 57.182 47.619 0.00 0.00 41.70 2.59
4411 4879 3.370315 CCAAGAGGCAAGAGCTGAATAGT 60.370 47.826 0.00 0.00 41.70 2.12
4412 4880 3.204526 CCAAGAGGCAAGAGCTGAATAG 58.795 50.000 0.00 0.00 41.70 1.73
4413 4881 3.272574 CCAAGAGGCAAGAGCTGAATA 57.727 47.619 0.00 0.00 41.70 1.75
4414 4882 2.125773 CCAAGAGGCAAGAGCTGAAT 57.874 50.000 0.00 0.00 41.70 2.57
4415 4883 3.639099 CCAAGAGGCAAGAGCTGAA 57.361 52.632 0.00 0.00 41.70 3.02
4426 4894 2.464459 GCGAATGACGGCCAAGAGG 61.464 63.158 2.24 0.00 42.83 3.69
4427 4895 3.093278 GCGAATGACGGCCAAGAG 58.907 61.111 2.24 0.00 42.83 2.85
4434 4902 1.815421 CCTTGGAGGCGAATGACGG 60.815 63.158 0.00 0.00 42.83 4.79
4435 4903 1.079127 ACCTTGGAGGCGAATGACG 60.079 57.895 0.00 0.00 39.63 4.35
4436 4904 0.036388 TCACCTTGGAGGCGAATGAC 60.036 55.000 0.00 0.00 39.63 3.06
4437 4905 0.690192 TTCACCTTGGAGGCGAATGA 59.310 50.000 0.00 0.00 39.63 2.57
4438 4906 0.804989 GTTCACCTTGGAGGCGAATG 59.195 55.000 1.23 0.00 38.54 2.67
4439 4907 0.322546 GGTTCACCTTGGAGGCGAAT 60.323 55.000 1.23 0.00 38.54 3.34
4440 4908 1.072505 GGTTCACCTTGGAGGCGAA 59.927 57.895 0.00 0.00 39.63 4.70
4441 4909 2.747686 GGTTCACCTTGGAGGCGA 59.252 61.111 0.00 0.00 39.63 5.54
4442 4910 2.742372 CGGTTCACCTTGGAGGCG 60.742 66.667 0.00 0.00 39.63 5.52
4443 4911 2.359975 CCGGTTCACCTTGGAGGC 60.360 66.667 0.00 0.00 39.63 4.70
4444 4912 2.359975 GCCGGTTCACCTTGGAGG 60.360 66.667 1.90 0.00 42.49 4.30
4445 4913 1.228124 TTGCCGGTTCACCTTGGAG 60.228 57.895 1.90 0.00 0.00 3.86
4446 4914 1.527380 GTTGCCGGTTCACCTTGGA 60.527 57.895 1.90 0.00 0.00 3.53
4447 4915 2.561037 GGTTGCCGGTTCACCTTGG 61.561 63.158 1.90 0.00 0.00 3.61
4448 4916 1.528309 AGGTTGCCGGTTCACCTTG 60.528 57.895 13.84 0.00 0.00 3.61
4449 4917 1.528309 CAGGTTGCCGGTTCACCTT 60.528 57.895 16.26 2.89 0.00 3.50
4450 4918 2.113139 CAGGTTGCCGGTTCACCT 59.887 61.111 13.84 13.84 0.00 4.00
4451 4919 0.535553 TAACAGGTTGCCGGTTCACC 60.536 55.000 1.90 7.05 40.75 4.02
4452 4920 1.002142 GTTAACAGGTTGCCGGTTCAC 60.002 52.381 1.90 3.81 40.75 3.18
4453 4921 1.134037 AGTTAACAGGTTGCCGGTTCA 60.134 47.619 8.61 0.00 40.75 3.18
4454 4922 1.265905 CAGTTAACAGGTTGCCGGTTC 59.734 52.381 8.61 0.00 40.75 3.62
4455 4923 1.134037 TCAGTTAACAGGTTGCCGGTT 60.134 47.619 8.61 8.56 43.65 4.44
4456 4924 0.470766 TCAGTTAACAGGTTGCCGGT 59.529 50.000 8.61 0.00 32.35 5.28
4457 4925 0.872388 GTCAGTTAACAGGTTGCCGG 59.128 55.000 8.61 0.00 0.00 6.13
4458 4926 0.511221 CGTCAGTTAACAGGTTGCCG 59.489 55.000 8.61 0.00 0.00 5.69
4459 4927 0.237498 GCGTCAGTTAACAGGTTGCC 59.763 55.000 8.61 0.00 0.00 4.52
4460 4928 0.941542 TGCGTCAGTTAACAGGTTGC 59.058 50.000 8.61 5.73 0.00 4.17
4461 4929 1.069906 GCTGCGTCAGTTAACAGGTTG 60.070 52.381 8.61 0.00 33.43 3.77
4462 4930 1.226746 GCTGCGTCAGTTAACAGGTT 58.773 50.000 8.61 0.00 33.43 3.50
4463 4931 0.105964 TGCTGCGTCAGTTAACAGGT 59.894 50.000 8.61 0.00 33.43 4.00
4464 4932 0.792640 CTGCTGCGTCAGTTAACAGG 59.207 55.000 8.61 0.00 33.43 4.00
4465 4933 0.792640 CCTGCTGCGTCAGTTAACAG 59.207 55.000 8.61 0.00 33.43 3.16
4466 4934 1.227999 GCCTGCTGCGTCAGTTAACA 61.228 55.000 8.61 0.00 33.43 2.41
4467 4935 1.497722 GCCTGCTGCGTCAGTTAAC 59.502 57.895 0.00 0.00 33.43 2.01
4468 4936 3.966215 GCCTGCTGCGTCAGTTAA 58.034 55.556 8.32 0.00 33.43 2.01
4477 4945 0.746204 GTTAGGAAGGAGCCTGCTGC 60.746 60.000 2.02 2.02 39.08 5.25
4478 4946 0.908198 AGTTAGGAAGGAGCCTGCTG 59.092 55.000 0.00 0.00 39.08 4.41
4479 4947 0.908198 CAGTTAGGAAGGAGCCTGCT 59.092 55.000 0.00 0.00 39.08 4.24
4480 4948 0.905357 TCAGTTAGGAAGGAGCCTGC 59.095 55.000 0.00 0.00 39.08 4.85
4481 4949 3.703001 TTTCAGTTAGGAAGGAGCCTG 57.297 47.619 0.00 0.00 39.08 4.85
4482 4950 4.936685 ATTTTCAGTTAGGAAGGAGCCT 57.063 40.909 0.00 0.00 42.15 4.58
4483 4951 5.984695 AAATTTTCAGTTAGGAAGGAGCC 57.015 39.130 0.00 0.00 0.00 4.70
4484 4952 6.072673 TCGAAAATTTTCAGTTAGGAAGGAGC 60.073 38.462 26.20 0.00 37.01 4.70
4485 4953 7.298854 GTCGAAAATTTTCAGTTAGGAAGGAG 58.701 38.462 26.20 8.88 37.01 3.69
4486 4954 6.073440 CGTCGAAAATTTTCAGTTAGGAAGGA 60.073 38.462 26.20 11.35 37.01 3.36
4487 4955 6.077838 CGTCGAAAATTTTCAGTTAGGAAGG 58.922 40.000 26.20 9.49 37.01 3.46
4488 4956 5.564127 GCGTCGAAAATTTTCAGTTAGGAAG 59.436 40.000 26.20 17.51 37.01 3.46
4489 4957 5.445845 GCGTCGAAAATTTTCAGTTAGGAA 58.554 37.500 26.20 4.35 37.01 3.36
4490 4958 4.083696 GGCGTCGAAAATTTTCAGTTAGGA 60.084 41.667 26.20 13.78 37.01 2.94
4491 4959 4.156182 GGCGTCGAAAATTTTCAGTTAGG 58.844 43.478 26.20 15.71 37.01 2.69
4492 4960 4.083484 AGGGCGTCGAAAATTTTCAGTTAG 60.083 41.667 26.20 14.90 37.01 2.34
4493 4961 3.816523 AGGGCGTCGAAAATTTTCAGTTA 59.183 39.130 26.20 9.27 37.01 2.24
4494 4962 2.621526 AGGGCGTCGAAAATTTTCAGTT 59.378 40.909 26.20 5.73 37.01 3.16
4495 4963 2.225727 GAGGGCGTCGAAAATTTTCAGT 59.774 45.455 26.20 6.15 37.01 3.41
4496 4964 2.225491 TGAGGGCGTCGAAAATTTTCAG 59.775 45.455 26.20 19.26 37.01 3.02
4497 4965 2.031508 GTGAGGGCGTCGAAAATTTTCA 60.032 45.455 26.20 13.40 37.01 2.69
4498 4966 2.581637 GTGAGGGCGTCGAAAATTTTC 58.418 47.619 19.08 19.08 0.00 2.29
4499 4967 1.069500 CGTGAGGGCGTCGAAAATTTT 60.069 47.619 2.28 2.28 0.00 1.82
4500 4968 0.515564 CGTGAGGGCGTCGAAAATTT 59.484 50.000 0.00 0.00 0.00 1.82
4501 4969 2.159181 CGTGAGGGCGTCGAAAATT 58.841 52.632 0.00 0.00 0.00 1.82
4502 4970 3.870606 CGTGAGGGCGTCGAAAAT 58.129 55.556 0.00 0.00 0.00 1.82
4514 4982 4.985409 GCTATTTATCACTTCCTCCGTGAG 59.015 45.833 0.00 0.00 43.82 3.51
4515 4983 4.649674 AGCTATTTATCACTTCCTCCGTGA 59.350 41.667 0.00 0.00 44.59 4.35
4516 4984 4.950050 AGCTATTTATCACTTCCTCCGTG 58.050 43.478 0.00 0.00 0.00 4.94
4517 4985 5.615925 AAGCTATTTATCACTTCCTCCGT 57.384 39.130 0.00 0.00 0.00 4.69
4518 4986 7.872993 TGAATAAGCTATTTATCACTTCCTCCG 59.127 37.037 0.00 0.00 30.65 4.63
4519 4987 9.732130 ATGAATAAGCTATTTATCACTTCCTCC 57.268 33.333 0.00 0.00 30.65 4.30
4523 4991 9.604626 GCACATGAATAAGCTATTTATCACTTC 57.395 33.333 0.00 0.00 30.65 3.01
4524 4992 9.123902 TGCACATGAATAAGCTATTTATCACTT 57.876 29.630 0.00 0.00 30.65 3.16
4525 4993 8.681486 TGCACATGAATAAGCTATTTATCACT 57.319 30.769 0.00 0.00 30.65 3.41
4526 4994 9.552114 GATGCACATGAATAAGCTATTTATCAC 57.448 33.333 0.00 0.00 30.65 3.06
4527 4995 9.287373 TGATGCACATGAATAAGCTATTTATCA 57.713 29.630 0.00 0.00 30.65 2.15
4545 5013 9.478768 CAAATAAATAAATAGCCATGATGCACA 57.521 29.630 0.00 0.00 0.00 4.57
4546 5014 8.437742 GCAAATAAATAAATAGCCATGATGCAC 58.562 33.333 0.00 0.00 0.00 4.57
4547 5015 7.603404 GGCAAATAAATAAATAGCCATGATGCA 59.397 33.333 0.00 0.00 40.29 3.96
4548 5016 7.603404 TGGCAAATAAATAAATAGCCATGATGC 59.397 33.333 0.00 0.00 44.89 3.91
4563 5031 9.382275 GTCCATGATAAACTTTGGCAAATAAAT 57.618 29.630 13.89 5.16 0.00 1.40
4564 5032 7.821846 GGTCCATGATAAACTTTGGCAAATAAA 59.178 33.333 13.89 0.16 0.00 1.40
4565 5033 7.180051 AGGTCCATGATAAACTTTGGCAAATAA 59.820 33.333 13.89 0.00 0.00 1.40
4566 5034 6.667414 AGGTCCATGATAAACTTTGGCAAATA 59.333 34.615 13.89 3.62 0.00 1.40
4567 5035 5.484998 AGGTCCATGATAAACTTTGGCAAAT 59.515 36.000 13.89 1.12 0.00 2.32
4568 5036 4.837860 AGGTCCATGATAAACTTTGGCAAA 59.162 37.500 12.79 12.79 0.00 3.68
4569 5037 4.415596 AGGTCCATGATAAACTTTGGCAA 58.584 39.130 0.00 0.00 0.00 4.52
4570 5038 4.046286 AGGTCCATGATAAACTTTGGCA 57.954 40.909 0.00 0.00 0.00 4.92
4571 5039 5.405935 AAAGGTCCATGATAAACTTTGGC 57.594 39.130 0.00 0.00 0.00 4.52
4572 5040 8.585018 AGTTAAAAGGTCCATGATAAACTTTGG 58.415 33.333 0.00 0.00 0.00 3.28
4573 5041 9.626045 GAGTTAAAAGGTCCATGATAAACTTTG 57.374 33.333 0.00 0.00 0.00 2.77
4574 5042 9.362151 TGAGTTAAAAGGTCCATGATAAACTTT 57.638 29.630 0.00 0.00 0.00 2.66
4575 5043 8.934023 TGAGTTAAAAGGTCCATGATAAACTT 57.066 30.769 0.00 0.00 0.00 2.66
4576 5044 8.567285 CTGAGTTAAAAGGTCCATGATAAACT 57.433 34.615 0.00 0.00 0.00 2.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.