Multiple sequence alignment - TraesCS2B01G512600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G512600 chr2B 100.000 2382 0 0 1 2382 707986212 707988593 0.000000e+00 4399.0
1 TraesCS2B01G512600 chr2B 85.251 895 83 24 649 1527 708064178 708065039 0.000000e+00 876.0
2 TraesCS2B01G512600 chr2B 91.683 505 27 7 1624 2121 708065249 708065745 0.000000e+00 686.0
3 TraesCS2B01G512600 chr2B 81.615 582 67 24 1056 1610 707978091 707978659 1.680000e-121 446.0
4 TraesCS2B01G512600 chr2B 91.813 171 10 4 2121 2287 106095020 106094850 3.960000e-58 235.0
5 TraesCS2B01G512600 chr2B 87.402 127 14 1 948 1072 707977908 707978034 6.860000e-31 145.0
6 TraesCS2B01G512600 chr2B 92.105 76 6 0 2281 2356 708065942 708066017 9.000000e-20 108.0
7 TraesCS2B01G512600 chr2B 82.979 94 7 3 737 821 707986564 707986657 2.540000e-10 76.8
8 TraesCS2B01G512600 chr2B 82.979 94 7 3 353 446 707986948 707987032 2.540000e-10 76.8
9 TraesCS2B01G512600 chr2A 91.907 729 37 10 892 1610 721450282 721450998 0.000000e+00 1000.0
10 TraesCS2B01G512600 chr2A 92.857 350 12 7 1637 1977 721451076 721451421 1.640000e-136 496.0
11 TraesCS2B01G512600 chr2A 85.597 486 38 18 378 848 721449814 721450282 4.600000e-132 481.0
12 TraesCS2B01G512600 chr2A 78.517 661 79 42 889 1524 721454421 721455043 2.240000e-100 375.0
13 TraesCS2B01G512600 chr2A 81.108 397 43 18 1150 1534 721417022 721417398 3.000000e-74 289.0
14 TraesCS2B01G512600 chr2A 89.109 202 12 3 62 254 721449405 721449605 2.370000e-60 243.0
15 TraesCS2B01G512600 chr2A 96.203 79 3 0 2017 2095 721451421 721451499 1.920000e-26 130.0
16 TraesCS2B01G512600 chr2A 82.119 151 13 5 889 1039 721415857 721415993 1.500000e-22 117.0
17 TraesCS2B01G512600 chr2A 84.375 64 10 0 762 825 721449814 721449877 1.980000e-06 63.9
18 TraesCS2B01G512600 chr2D 88.919 731 45 11 892 1610 586369768 586370474 0.000000e+00 869.0
19 TraesCS2B01G512600 chr2D 91.949 472 24 7 1623 2084 586370558 586371025 0.000000e+00 649.0
20 TraesCS2B01G512600 chr2D 80.064 933 102 42 714 1610 586359982 586360866 1.210000e-172 616.0
21 TraesCS2B01G512600 chr2D 87.246 541 48 7 316 848 586369241 586369768 4.380000e-167 597.0
22 TraesCS2B01G512600 chr2D 92.262 168 6 7 2120 2282 559208849 559208684 5.120000e-57 231.0
23 TraesCS2B01G512600 chr2D 97.143 35 1 0 2348 2382 469235664 469235630 2.560000e-05 60.2
24 TraesCS2B01G512600 chr1D 92.353 170 10 3 2117 2283 242560436 242560267 3.060000e-59 239.0
25 TraesCS2B01G512600 chr1D 89.130 46 1 4 2340 2382 227287994 227288038 1.000000e-03 54.7
26 TraesCS2B01G512600 chr7D 92.216 167 12 1 2127 2292 154177317 154177151 3.960000e-58 235.0
27 TraesCS2B01G512600 chr3D 92.169 166 10 3 2120 2282 8971973 8971808 5.120000e-57 231.0
28 TraesCS2B01G512600 chr3D 94.595 37 1 1 2346 2382 178438497 178438462 3.310000e-04 56.5
29 TraesCS2B01G512600 chr3B 91.279 172 11 4 2118 2285 50349356 50349527 5.120000e-57 231.0
30 TraesCS2B01G512600 chr3B 90.698 43 3 1 2341 2382 600388834 600388792 3.310000e-04 56.5
31 TraesCS2B01G512600 chrUn 91.176 170 11 4 2121 2287 112721299 112721131 6.620000e-56 228.0
32 TraesCS2B01G512600 chr6D 91.176 170 11 4 2121 2287 348912665 348912833 6.620000e-56 228.0
33 TraesCS2B01G512600 chr6D 97.143 35 0 1 2349 2382 458034777 458034811 9.200000e-05 58.4
34 TraesCS2B01G512600 chr4D 91.176 170 11 4 2121 2287 41411593 41411761 6.620000e-56 228.0
35 TraesCS2B01G512600 chr7A 100.000 32 0 0 2350 2381 154009643 154009612 2.560000e-05 60.2
36 TraesCS2B01G512600 chr6A 100.000 32 0 0 2351 2382 51058709 51058740 2.560000e-05 60.2
37 TraesCS2B01G512600 chr6B 90.909 44 1 3 2341 2382 672322718 672322760 3.310000e-04 56.5
38 TraesCS2B01G512600 chr7B 100.000 28 0 0 2355 2382 99315398 99315371 4.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G512600 chr2B 707986212 707988593 2381 False 1517.533333 4399 88.652667 1 2382 3 chr2B.!!$F2 2381
1 TraesCS2B01G512600 chr2B 708064178 708066017 1839 False 556.666667 876 89.679667 649 2356 3 chr2B.!!$F3 1707
2 TraesCS2B01G512600 chr2B 707977908 707978659 751 False 295.500000 446 84.508500 948 1610 2 chr2B.!!$F1 662
3 TraesCS2B01G512600 chr2A 721449405 721455043 5638 False 398.414286 1000 88.366429 62 2095 7 chr2A.!!$F2 2033
4 TraesCS2B01G512600 chr2A 721415857 721417398 1541 False 203.000000 289 81.613500 889 1534 2 chr2A.!!$F1 645
5 TraesCS2B01G512600 chr2D 586369241 586371025 1784 False 705.000000 869 89.371333 316 2084 3 chr2D.!!$F2 1768
6 TraesCS2B01G512600 chr2D 586359982 586360866 884 False 616.000000 616 80.064000 714 1610 1 chr2D.!!$F1 896

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
206 216 0.03601 CCGGAGTTGAGAAGCACCAT 60.036 55.0 0.0 0.0 0.0 3.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1762 3106 0.388649 CCTTCTGTCTCCGGTTGTCG 60.389 60.0 0.0 0.0 38.88 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.964807 TCTGATAATTGGCACTGCAAATAT 57.035 33.333 3.95 0.00 29.96 1.28
24 25 6.741109 TCTGATAATTGGCACTGCAAATATG 58.259 36.000 3.95 0.00 29.96 1.78
25 26 6.546772 TCTGATAATTGGCACTGCAAATATGA 59.453 34.615 3.95 0.00 29.96 2.15
26 27 6.506147 TGATAATTGGCACTGCAAATATGAC 58.494 36.000 3.95 0.00 29.96 3.06
27 28 4.804868 AATTGGCACTGCAAATATGACA 57.195 36.364 3.95 0.00 29.96 3.58
28 29 5.347620 AATTGGCACTGCAAATATGACAT 57.652 34.783 3.95 0.00 29.96 3.06
29 30 3.786516 TGGCACTGCAAATATGACATG 57.213 42.857 2.82 0.00 0.00 3.21
30 31 3.090790 TGGCACTGCAAATATGACATGT 58.909 40.909 0.00 0.00 0.00 3.21
31 32 3.119424 TGGCACTGCAAATATGACATGTG 60.119 43.478 1.15 0.00 0.00 3.21
32 33 3.441163 GCACTGCAAATATGACATGTGG 58.559 45.455 1.15 0.00 0.00 4.17
33 34 3.735820 GCACTGCAAATATGACATGTGGG 60.736 47.826 1.15 0.00 0.00 4.61
34 35 3.444742 CACTGCAAATATGACATGTGGGT 59.555 43.478 1.15 0.00 0.00 4.51
35 36 3.696051 ACTGCAAATATGACATGTGGGTC 59.304 43.478 1.15 0.00 38.29 4.46
36 37 3.023119 TGCAAATATGACATGTGGGTCC 58.977 45.455 1.15 0.00 36.97 4.46
37 38 3.023119 GCAAATATGACATGTGGGTCCA 58.977 45.455 1.15 0.00 36.97 4.02
38 39 3.446873 GCAAATATGACATGTGGGTCCAA 59.553 43.478 1.15 0.00 36.97 3.53
39 40 4.081752 GCAAATATGACATGTGGGTCCAAA 60.082 41.667 1.15 0.00 36.97 3.28
40 41 5.410067 CAAATATGACATGTGGGTCCAAAC 58.590 41.667 1.15 0.00 36.97 2.93
41 42 1.923356 ATGACATGTGGGTCCAAACC 58.077 50.000 1.15 0.00 45.65 3.27
51 52 0.606096 GGTCCAAACCGGGAAAATGG 59.394 55.000 6.32 6.66 39.05 3.16
52 53 1.623163 GTCCAAACCGGGAAAATGGA 58.377 50.000 6.32 9.12 39.05 3.41
53 54 1.964933 GTCCAAACCGGGAAAATGGAA 59.035 47.619 6.32 0.00 41.54 3.53
54 55 2.365941 GTCCAAACCGGGAAAATGGAAA 59.634 45.455 6.32 0.00 41.54 3.13
55 56 3.039011 TCCAAACCGGGAAAATGGAAAA 58.961 40.909 6.32 0.00 37.24 2.29
56 57 3.454812 TCCAAACCGGGAAAATGGAAAAA 59.545 39.130 6.32 0.00 37.24 1.94
98 99 9.575783 TTTTGTCTAACAAACAATCAAAGGTAC 57.424 29.630 4.82 0.00 46.53 3.34
143 153 8.330466 TGATTATAAAGCAAAGACGAGGAAAA 57.670 30.769 0.00 0.00 0.00 2.29
162 172 9.508567 GAGGAAAATATGCTTTTTCTGTCATAC 57.491 33.333 15.03 3.13 42.55 2.39
164 174 9.860898 GGAAAATATGCTTTTTCTGTCATACTT 57.139 29.630 15.03 0.00 42.55 2.24
171 181 6.767902 TGCTTTTTCTGTCATACTTCTCTTGT 59.232 34.615 0.00 0.00 0.00 3.16
174 184 9.657121 CTTTTTCTGTCATACTTCTCTTGTTTC 57.343 33.333 0.00 0.00 0.00 2.78
181 191 7.600375 TGTCATACTTCTCTTGTTTCTCATGTC 59.400 37.037 0.00 0.00 0.00 3.06
195 205 2.226330 TCATGTCCAAAACCGGAGTTG 58.774 47.619 9.46 11.81 35.97 3.16
206 216 0.036010 CCGGAGTTGAGAAGCACCAT 60.036 55.000 0.00 0.00 0.00 3.55
217 227 4.039852 TGAGAAGCACCATTACACTACACA 59.960 41.667 0.00 0.00 0.00 3.72
232 242 2.814280 ACACAGTAACTTCCAGACCG 57.186 50.000 0.00 0.00 0.00 4.79
277 296 0.878961 ACGACGAAGGCTGACAAACC 60.879 55.000 0.00 0.00 0.00 3.27
278 297 1.566018 CGACGAAGGCTGACAAACCC 61.566 60.000 0.00 0.00 0.00 4.11
280 299 0.535102 ACGAAGGCTGACAAACCCTG 60.535 55.000 0.00 0.00 0.00 4.45
281 300 0.535102 CGAAGGCTGACAAACCCTGT 60.535 55.000 0.00 0.00 42.61 4.00
282 301 1.692411 GAAGGCTGACAAACCCTGTT 58.308 50.000 0.00 0.00 38.84 3.16
283 302 1.338020 GAAGGCTGACAAACCCTGTTG 59.662 52.381 0.00 0.00 38.84 3.33
284 303 0.468029 AGGCTGACAAACCCTGTTGG 60.468 55.000 0.00 0.00 38.84 3.77
293 312 2.683475 CCCTGTTGGTCCATCCCC 59.317 66.667 0.00 0.00 34.77 4.81
294 313 1.930656 CCCTGTTGGTCCATCCCCT 60.931 63.158 0.00 0.00 34.77 4.79
295 314 1.609783 CCTGTTGGTCCATCCCCTC 59.390 63.158 0.00 0.00 34.77 4.30
296 315 1.207488 CCTGTTGGTCCATCCCCTCA 61.207 60.000 0.00 0.00 34.77 3.86
297 316 0.698238 CTGTTGGTCCATCCCCTCAA 59.302 55.000 0.00 0.00 34.77 3.02
298 317 1.075374 CTGTTGGTCCATCCCCTCAAA 59.925 52.381 0.00 0.00 34.77 2.69
299 318 1.501170 TGTTGGTCCATCCCCTCAAAA 59.499 47.619 0.00 0.00 34.77 2.44
300 319 2.091055 TGTTGGTCCATCCCCTCAAAAA 60.091 45.455 0.00 0.00 34.77 1.94
429 559 0.397254 ACGGTGGCAGGCTACTAGAT 60.397 55.000 7.70 0.00 0.00 1.98
499 639 8.999431 TCTTTCAAAATTCTCTAGCGTAAACAT 58.001 29.630 0.00 0.00 0.00 2.71
531 671 9.962759 AAGATTACACGTACATTTTTCGAATAC 57.037 29.630 0.00 0.00 0.00 1.89
538 678 3.160545 ACATTTTTCGAATACGCGCAAG 58.839 40.909 5.73 0.00 39.58 4.01
619 764 9.508567 TGCACACTTTTTAAAATTAAAAATGCC 57.491 25.926 26.04 17.21 44.87 4.40
742 890 0.693049 ACTTACTGGACAGGGGCAAG 59.307 55.000 4.14 4.48 0.00 4.01
771 922 0.536687 CCAGCAAGGATCATCGGCAT 60.537 55.000 6.73 0.00 41.22 4.40
772 923 0.591659 CAGCAAGGATCATCGGCATG 59.408 55.000 6.73 0.00 0.00 4.06
852 1003 5.625921 AAGAGACTCGTAACTTACAGGTC 57.374 43.478 10.77 10.77 33.20 3.85
872 1023 2.046314 GCACTCGGGCAAGCCTTA 60.046 61.111 11.40 0.00 36.10 2.69
880 1031 2.007608 CGGGCAAGCCTTAAGAAGTAC 58.992 52.381 11.40 0.00 36.10 2.73
881 1032 2.007608 GGGCAAGCCTTAAGAAGTACG 58.992 52.381 11.40 0.00 36.10 3.67
882 1033 2.007608 GGCAAGCCTTAAGAAGTACGG 58.992 52.381 3.36 0.00 0.00 4.02
883 1034 2.354403 GGCAAGCCTTAAGAAGTACGGA 60.354 50.000 3.36 0.00 0.00 4.69
884 1035 2.930682 GCAAGCCTTAAGAAGTACGGAG 59.069 50.000 3.36 0.00 0.00 4.63
886 1037 4.381292 GCAAGCCTTAAGAAGTACGGAGTA 60.381 45.833 3.36 0.00 45.11 2.59
936 1087 5.874895 AAAAATTAGGTAGAACTGTCGGC 57.125 39.130 0.00 0.00 0.00 5.54
957 1108 3.130693 GCCCCTCCACTATATAAGTAGCG 59.869 52.174 0.00 0.00 35.76 4.26
1165 2242 6.091986 GTCTTGGTCATCTTCTCAAGTTGATC 59.908 42.308 5.91 1.70 38.91 2.92
1170 2247 6.127196 GGTCATCTTCTCAAGTTGATCCTACT 60.127 42.308 5.91 0.00 38.91 2.57
1171 2248 7.068839 GGTCATCTTCTCAAGTTGATCCTACTA 59.931 40.741 5.91 0.00 38.91 1.82
1174 2251 7.397892 TCTTCTCAAGTTGATCCTACTACAG 57.602 40.000 5.91 0.00 0.00 2.74
1360 2452 0.031111 CTCCCCACCTCATCCTACCA 60.031 60.000 0.00 0.00 0.00 3.25
1374 2466 1.133976 CCTACCATGCAAGGGAAGAGG 60.134 57.143 13.45 9.20 43.46 3.69
1392 2491 3.562635 GTGCTAACCTCACCGCAC 58.437 61.111 0.00 0.00 44.73 5.34
1576 2710 7.936847 TCACATTGTGGATTTGAAACTACTACT 59.063 33.333 16.46 0.00 33.87 2.57
1644 2972 2.293122 GCACAACAACTAATGTCAGCCA 59.707 45.455 0.00 0.00 42.99 4.75
1661 2989 0.040958 CCAAACTGAAGCTGTGTCGC 60.041 55.000 0.00 0.00 0.00 5.19
1698 3026 5.869888 GGAGAAATCGTATGCCAATACTAGG 59.130 44.000 0.00 0.00 37.16 3.02
1780 3124 3.108521 CGACAACCGGAGACAGAAG 57.891 57.895 9.46 0.00 33.91 2.85
1842 3186 2.755655 GCTCTGTTCCACTGCTAGACTA 59.244 50.000 0.00 0.00 0.00 2.59
1881 3229 3.084786 AGCAGAGTAAACAAATCAGGCC 58.915 45.455 0.00 0.00 0.00 5.19
1887 3235 1.534729 AAACAAATCAGGCCGAGACC 58.465 50.000 0.00 0.00 0.00 3.85
1888 3236 0.673644 AACAAATCAGGCCGAGACCG 60.674 55.000 0.00 0.00 33.69 4.79
1889 3237 2.125106 AAATCAGGCCGAGACCGC 60.125 61.111 0.00 0.00 33.69 5.68
1890 3238 3.682292 AAATCAGGCCGAGACCGCC 62.682 63.158 0.00 0.00 33.97 6.13
2101 3454 3.057969 TGGATCCTGCTTGTAAGTGTG 57.942 47.619 14.23 0.00 0.00 3.82
2121 3476 0.170784 CATGCGGCAACAAGCACATA 59.829 50.000 6.82 0.00 46.83 2.29
2123 3478 2.221384 ATGCGGCAACAAGCACATACT 61.221 47.619 6.82 0.00 46.83 2.12
2124 3479 4.080526 ATGCGGCAACAAGCACATACTC 62.081 50.000 6.82 0.00 46.83 2.59
2127 3482 0.811281 GCAACAAGCACATACTCCCC 59.189 55.000 0.00 0.00 44.79 4.81
2128 3483 1.086696 CAACAAGCACATACTCCCCG 58.913 55.000 0.00 0.00 0.00 5.73
2129 3484 0.690762 AACAAGCACATACTCCCCGT 59.309 50.000 0.00 0.00 0.00 5.28
2130 3485 0.690762 ACAAGCACATACTCCCCGTT 59.309 50.000 0.00 0.00 0.00 4.44
2131 3486 1.338769 ACAAGCACATACTCCCCGTTC 60.339 52.381 0.00 0.00 0.00 3.95
2133 3488 0.617820 AGCACATACTCCCCGTTCCT 60.618 55.000 0.00 0.00 0.00 3.36
2134 3489 1.117150 GCACATACTCCCCGTTCCTA 58.883 55.000 0.00 0.00 0.00 2.94
2135 3490 1.483415 GCACATACTCCCCGTTCCTAA 59.517 52.381 0.00 0.00 0.00 2.69
2138 3493 4.202284 GCACATACTCCCCGTTCCTAAATA 60.202 45.833 0.00 0.00 0.00 1.40
2139 3494 5.512576 GCACATACTCCCCGTTCCTAAATAT 60.513 44.000 0.00 0.00 0.00 1.28
2141 3496 7.673180 CACATACTCCCCGTTCCTAAATATAA 58.327 38.462 0.00 0.00 0.00 0.98
2142 3497 7.817962 CACATACTCCCCGTTCCTAAATATAAG 59.182 40.741 0.00 0.00 0.00 1.73
2143 3498 7.511714 ACATACTCCCCGTTCCTAAATATAAGT 59.488 37.037 0.00 0.00 0.00 2.24
2144 3499 6.416631 ACTCCCCGTTCCTAAATATAAGTC 57.583 41.667 0.00 0.00 0.00 3.01
2145 3500 6.141790 ACTCCCCGTTCCTAAATATAAGTCT 58.858 40.000 0.00 0.00 0.00 3.24
2146 3501 6.614496 ACTCCCCGTTCCTAAATATAAGTCTT 59.386 38.462 0.00 0.00 0.00 3.01
2147 3502 7.126879 ACTCCCCGTTCCTAAATATAAGTCTTT 59.873 37.037 0.00 0.00 0.00 2.52
2148 3503 7.277396 TCCCCGTTCCTAAATATAAGTCTTTG 58.723 38.462 0.00 0.00 0.00 2.77
2149 3504 7.052248 CCCCGTTCCTAAATATAAGTCTTTGT 58.948 38.462 0.00 0.00 0.00 2.83
2185 3540 9.882996 AAATGAACTATAACATACGAATGCATG 57.117 29.630 0.00 0.00 36.50 4.06
2186 3541 8.607441 ATGAACTATAACATACGAATGCATGT 57.393 30.769 0.00 0.00 36.50 3.21
2188 3543 9.191995 TGAACTATAACATACGAATGCATGTAG 57.808 33.333 0.00 0.00 36.50 2.74
2189 3544 9.406828 GAACTATAACATACGAATGCATGTAGA 57.593 33.333 0.00 0.00 36.50 2.59
2190 3545 8.744008 ACTATAACATACGAATGCATGTAGAC 57.256 34.615 0.00 0.00 36.50 2.59
2192 3547 9.358872 CTATAACATACGAATGCATGTAGACAT 57.641 33.333 0.00 0.00 36.50 3.06
2194 3549 9.875691 ATAACATACGAATGCATGTAGACATAT 57.124 29.630 0.00 0.00 36.50 1.78
2195 3550 8.607441 AACATACGAATGCATGTAGACATATT 57.393 30.769 0.00 0.00 36.50 1.28
2196 3551 8.607441 ACATACGAATGCATGTAGACATATTT 57.393 30.769 0.00 0.00 36.50 1.40
2197 3552 9.056005 ACATACGAATGCATGTAGACATATTTT 57.944 29.630 0.00 0.00 36.50 1.82
2200 3555 8.887036 ACGAATGCATGTAGACATATTTTAGA 57.113 30.769 0.00 0.00 34.26 2.10
2201 3556 8.982685 ACGAATGCATGTAGACATATTTTAGAG 58.017 33.333 0.00 0.00 34.26 2.43
2202 3557 8.982685 CGAATGCATGTAGACATATTTTAGAGT 58.017 33.333 0.00 0.00 34.26 3.24
2205 3560 8.424274 TGCATGTAGACATATTTTAGAGTGTG 57.576 34.615 0.00 0.00 34.26 3.82
2206 3561 8.257306 TGCATGTAGACATATTTTAGAGTGTGA 58.743 33.333 0.00 0.00 34.26 3.58
2224 3579 7.440523 AGTGTGAATTCACTCATTTTACTCC 57.559 36.000 32.57 8.25 44.07 3.85
2225 3580 6.147821 AGTGTGAATTCACTCATTTTACTCCG 59.852 38.462 32.57 0.00 44.07 4.63
2227 3582 7.117236 GTGTGAATTCACTCATTTTACTCCGTA 59.883 37.037 32.57 9.55 46.55 4.02
2229 3584 8.116753 GTGAATTCACTCATTTTACTCCGTATG 58.883 37.037 27.66 0.00 43.25 2.39
2231 3586 9.309516 GAATTCACTCATTTTACTCCGTATGTA 57.690 33.333 0.00 0.00 0.00 2.29
2232 3587 8.873215 ATTCACTCATTTTACTCCGTATGTAG 57.127 34.615 0.00 0.00 0.00 2.74
2234 3589 7.478322 TCACTCATTTTACTCCGTATGTAGTC 58.522 38.462 0.00 0.00 0.00 2.59
2235 3590 7.121611 TCACTCATTTTACTCCGTATGTAGTCA 59.878 37.037 0.00 0.00 0.00 3.41
2236 3591 7.220300 CACTCATTTTACTCCGTATGTAGTCAC 59.780 40.741 0.00 0.00 0.00 3.67
2239 3594 5.571784 TTTACTCCGTATGTAGTCACCTG 57.428 43.478 0.00 0.00 0.00 4.00
2240 3595 3.083122 ACTCCGTATGTAGTCACCTGT 57.917 47.619 0.00 0.00 0.00 4.00
2241 3596 3.428532 ACTCCGTATGTAGTCACCTGTT 58.571 45.455 0.00 0.00 0.00 3.16
2242 3597 3.192844 ACTCCGTATGTAGTCACCTGTTG 59.807 47.826 0.00 0.00 0.00 3.33
2245 3600 4.281435 TCCGTATGTAGTCACCTGTTGAAA 59.719 41.667 0.00 0.00 35.39 2.69
2246 3601 5.046878 TCCGTATGTAGTCACCTGTTGAAAT 60.047 40.000 0.00 0.00 35.39 2.17
2247 3602 5.291128 CCGTATGTAGTCACCTGTTGAAATC 59.709 44.000 0.00 0.00 35.39 2.17
2249 3604 6.253727 CGTATGTAGTCACCTGTTGAAATCTC 59.746 42.308 0.00 0.00 35.39 2.75
2250 3605 5.808366 TGTAGTCACCTGTTGAAATCTCT 57.192 39.130 0.00 0.00 35.39 3.10
2252 3607 6.925211 TGTAGTCACCTGTTGAAATCTCTAG 58.075 40.000 0.00 0.00 35.39 2.43
2254 3609 6.672266 AGTCACCTGTTGAAATCTCTAGAA 57.328 37.500 0.00 0.00 35.39 2.10
2255 3610 7.067496 AGTCACCTGTTGAAATCTCTAGAAA 57.933 36.000 0.00 0.00 35.39 2.52
2258 3613 7.117092 GTCACCTGTTGAAATCTCTAGAAAGAC 59.883 40.741 0.00 0.00 35.39 3.01
2259 3614 7.015682 TCACCTGTTGAAATCTCTAGAAAGACT 59.984 37.037 0.00 0.00 0.00 3.24
2260 3615 7.659390 CACCTGTTGAAATCTCTAGAAAGACTT 59.341 37.037 0.00 0.00 0.00 3.01
2262 3617 9.883142 CCTGTTGAAATCTCTAGAAAGACTTAT 57.117 33.333 0.00 0.00 0.00 1.73
2274 3629 9.595823 TCTAGAAAGACTTATATTTGGAAACGG 57.404 33.333 0.00 0.00 0.00 4.44
2275 3630 9.595823 CTAGAAAGACTTATATTTGGAAACGGA 57.404 33.333 0.00 0.00 0.00 4.69
2276 3631 8.494016 AGAAAGACTTATATTTGGAAACGGAG 57.506 34.615 0.00 0.00 0.00 4.63
2278 3633 6.555463 AGACTTATATTTGGAAACGGAGGA 57.445 37.500 0.00 0.00 0.00 3.71
2279 3634 6.583562 AGACTTATATTTGGAAACGGAGGAG 58.416 40.000 0.00 0.00 0.00 3.69
2290 3684 5.105473 TGGAAACGGAGGAGTAGTTATCAAG 60.105 44.000 0.00 0.00 0.00 3.02
2342 3736 9.454859 ACTGGTTTTTGGATTTGTTTTAAATGA 57.545 25.926 0.00 0.00 0.00 2.57
2371 3765 9.503399 AGTTTGAAATACACTACTAGGAAAAGG 57.497 33.333 0.00 0.00 0.00 3.11
2372 3766 8.727910 GTTTGAAATACACTACTAGGAAAAGGG 58.272 37.037 0.00 0.00 0.00 3.95
2373 3767 6.412214 TGAAATACACTACTAGGAAAAGGGC 58.588 40.000 0.00 0.00 0.00 5.19
2374 3768 6.214819 TGAAATACACTACTAGGAAAAGGGCT 59.785 38.462 0.00 0.00 0.00 5.19
2376 3770 7.932683 AATACACTACTAGGAAAAGGGCTAT 57.067 36.000 0.00 0.00 0.00 2.97
2377 3771 9.443365 AAATACACTACTAGGAAAAGGGCTATA 57.557 33.333 0.00 0.00 0.00 1.31
2378 3772 6.980416 ACACTACTAGGAAAAGGGCTATAG 57.020 41.667 0.00 0.00 0.00 1.31
2379 3773 6.680540 ACACTACTAGGAAAAGGGCTATAGA 58.319 40.000 3.21 0.00 0.00 1.98
2380 3774 7.306781 ACACTACTAGGAAAAGGGCTATAGAT 58.693 38.462 3.21 0.00 0.00 1.98
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 6.639686 GTCATATTTGCAGTGCCAATTATCAG 59.360 38.462 18.50 6.20 0.00 2.90
3 4 6.506147 TGTCATATTTGCAGTGCCAATTATC 58.494 36.000 18.50 8.71 0.00 1.75
4 5 6.468333 TGTCATATTTGCAGTGCCAATTAT 57.532 33.333 18.50 12.17 0.00 1.28
5 6 5.911378 TGTCATATTTGCAGTGCCAATTA 57.089 34.783 18.50 10.71 0.00 1.40
6 7 4.804868 TGTCATATTTGCAGTGCCAATT 57.195 36.364 18.50 9.11 0.00 2.32
7 8 4.160814 ACATGTCATATTTGCAGTGCCAAT 59.839 37.500 17.56 17.56 0.00 3.16
8 9 3.510753 ACATGTCATATTTGCAGTGCCAA 59.489 39.130 13.72 8.61 0.00 4.52
9 10 3.090790 ACATGTCATATTTGCAGTGCCA 58.909 40.909 13.72 0.00 0.00 4.92
10 11 3.441163 CACATGTCATATTTGCAGTGCC 58.559 45.455 13.72 0.00 0.00 5.01
11 12 3.441163 CCACATGTCATATTTGCAGTGC 58.559 45.455 8.58 8.58 0.00 4.40
12 13 3.444742 ACCCACATGTCATATTTGCAGTG 59.555 43.478 0.00 0.00 0.00 3.66
13 14 3.696051 GACCCACATGTCATATTTGCAGT 59.304 43.478 0.00 0.00 35.29 4.40
14 15 3.067180 GGACCCACATGTCATATTTGCAG 59.933 47.826 0.00 0.00 36.97 4.41
15 16 3.023119 GGACCCACATGTCATATTTGCA 58.977 45.455 0.00 0.00 36.97 4.08
16 17 3.023119 TGGACCCACATGTCATATTTGC 58.977 45.455 0.00 0.00 36.97 3.68
17 18 5.410067 GTTTGGACCCACATGTCATATTTG 58.590 41.667 0.00 0.00 36.97 2.32
18 19 4.466015 GGTTTGGACCCACATGTCATATTT 59.534 41.667 0.00 0.00 40.25 1.40
19 20 4.023291 GGTTTGGACCCACATGTCATATT 58.977 43.478 0.00 0.00 40.25 1.28
20 21 3.631250 GGTTTGGACCCACATGTCATAT 58.369 45.455 0.00 0.00 40.25 1.78
21 22 2.616765 CGGTTTGGACCCACATGTCATA 60.617 50.000 0.00 0.00 43.42 2.15
22 23 1.886222 CGGTTTGGACCCACATGTCAT 60.886 52.381 0.00 0.00 43.42 3.06
23 24 0.536233 CGGTTTGGACCCACATGTCA 60.536 55.000 0.00 0.00 43.42 3.58
24 25 1.241315 CCGGTTTGGACCCACATGTC 61.241 60.000 0.00 0.00 43.42 3.06
25 26 1.228429 CCGGTTTGGACCCACATGT 60.228 57.895 0.00 0.00 43.42 3.21
26 27 1.976474 CCCGGTTTGGACCCACATG 60.976 63.158 0.00 0.00 43.42 3.21
27 28 1.721093 TTCCCGGTTTGGACCCACAT 61.721 55.000 0.00 0.00 43.42 3.21
28 29 1.934459 TTTCCCGGTTTGGACCCACA 61.934 55.000 0.00 0.00 43.42 4.17
29 30 0.756070 TTTTCCCGGTTTGGACCCAC 60.756 55.000 0.00 0.00 43.42 4.61
30 31 0.188834 ATTTTCCCGGTTTGGACCCA 59.811 50.000 0.00 0.00 43.42 4.51
31 32 0.606096 CATTTTCCCGGTTTGGACCC 59.394 55.000 0.00 0.00 43.42 4.46
32 33 0.606096 CCATTTTCCCGGTTTGGACC 59.394 55.000 0.00 0.00 42.00 4.46
33 34 1.623163 TCCATTTTCCCGGTTTGGAC 58.377 50.000 0.00 0.00 42.00 4.02
34 35 2.383442 TTCCATTTTCCCGGTTTGGA 57.617 45.000 0.00 2.21 42.00 3.53
35 36 3.477210 TTTTCCATTTTCCCGGTTTGG 57.523 42.857 0.00 0.00 37.55 3.28
57 58 9.349713 TGTTAGACAAAATACTCCATTTTCAGT 57.650 29.630 0.00 0.00 43.51 3.41
134 144 6.206634 TGACAGAAAAAGCATATTTTCCTCGT 59.793 34.615 14.81 11.30 45.93 4.18
143 153 9.678260 AAGAGAAGTATGACAGAAAAAGCATAT 57.322 29.630 0.00 0.00 0.00 1.78
145 155 7.446625 ACAAGAGAAGTATGACAGAAAAAGCAT 59.553 33.333 0.00 0.00 0.00 3.79
162 172 6.624352 TTTGGACATGAGAAACAAGAGAAG 57.376 37.500 0.00 0.00 0.00 2.85
164 174 5.299279 GGTTTTGGACATGAGAAACAAGAGA 59.701 40.000 0.00 0.00 34.54 3.10
171 181 3.146066 CTCCGGTTTTGGACATGAGAAA 58.854 45.455 0.00 0.00 33.48 2.52
174 184 2.185004 ACTCCGGTTTTGGACATGAG 57.815 50.000 0.00 0.00 35.03 2.90
181 191 1.266989 GCTTCTCAACTCCGGTTTTGG 59.733 52.381 15.03 8.23 32.73 3.28
195 205 4.566004 TGTGTAGTGTAATGGTGCTTCTC 58.434 43.478 0.00 0.00 0.00 2.87
206 216 6.239120 GGTCTGGAAGTTACTGTGTAGTGTAA 60.239 42.308 0.00 0.00 35.03 2.41
232 242 0.249489 ATATTGTGGTCGCGAGCTCC 60.249 55.000 34.85 25.62 0.00 4.70
256 275 0.937699 TTTGTCAGCCTTCGTCGTCG 60.938 55.000 0.00 0.00 38.55 5.12
258 277 0.878961 GGTTTGTCAGCCTTCGTCGT 60.879 55.000 0.00 0.00 0.00 4.34
277 296 1.207488 TGAGGGGATGGACCAACAGG 61.207 60.000 0.00 0.00 41.20 4.00
278 297 0.698238 TTGAGGGGATGGACCAACAG 59.302 55.000 0.00 0.00 41.20 3.16
280 299 2.302587 TTTTGAGGGGATGGACCAAC 57.697 50.000 0.00 0.00 41.20 3.77
305 324 2.487746 ATGGACCAACAGGGGTTTTT 57.512 45.000 0.00 0.00 42.53 1.94
306 325 3.236047 GTTATGGACCAACAGGGGTTTT 58.764 45.455 0.00 0.00 42.53 2.43
307 326 2.884320 GTTATGGACCAACAGGGGTTT 58.116 47.619 0.00 0.00 42.53 3.27
308 327 2.597578 GTTATGGACCAACAGGGGTT 57.402 50.000 0.00 0.00 42.53 4.11
383 513 2.126346 GCCGAAACAGCACATGCC 60.126 61.111 0.00 0.00 43.38 4.40
411 541 0.753262 AATCTAGTAGCCTGCCACCG 59.247 55.000 0.00 0.00 0.00 4.94
412 542 3.283259 AAAATCTAGTAGCCTGCCACC 57.717 47.619 0.00 0.00 0.00 4.61
413 543 4.261801 TCAAAAATCTAGTAGCCTGCCAC 58.738 43.478 0.00 0.00 0.00 5.01
414 544 4.568072 TCAAAAATCTAGTAGCCTGCCA 57.432 40.909 0.00 0.00 0.00 4.92
415 545 5.009110 GGAATCAAAAATCTAGTAGCCTGCC 59.991 44.000 0.00 0.00 0.00 4.85
416 546 5.590259 TGGAATCAAAAATCTAGTAGCCTGC 59.410 40.000 0.00 0.00 0.00 4.85
417 547 6.038714 GGTGGAATCAAAAATCTAGTAGCCTG 59.961 42.308 0.00 0.00 0.00 4.85
418 548 6.069381 AGGTGGAATCAAAAATCTAGTAGCCT 60.069 38.462 0.00 0.00 0.00 4.58
429 559 6.049955 AGTCTCGATAGGTGGAATCAAAAA 57.950 37.500 0.00 0.00 0.00 1.94
573 717 8.934825 GTGTGCATATTTTAAAATGGTTCATGT 58.065 29.630 21.19 0.00 0.00 3.21
715 862 0.386476 TGTCCAGTAAGTGTTCGCGT 59.614 50.000 5.77 0.00 0.00 6.01
718 865 1.337823 CCCCTGTCCAGTAAGTGTTCG 60.338 57.143 0.00 0.00 0.00 3.95
788 939 6.552445 ATCAAAATCTAGTAGCCTGACACT 57.448 37.500 0.00 0.00 0.00 3.55
825 976 7.094848 ACCTGTAAGTTACGAGTCTCTTTCTAC 60.095 40.741 8.47 0.00 0.00 2.59
852 1003 3.818787 GGCTTGCCCGAGTGCATG 61.819 66.667 0.00 0.00 41.70 4.06
872 1023 6.590068 TCATAGCTAGTACTCCGTACTTCTT 58.410 40.000 11.44 1.98 45.68 2.52
880 1031 8.270080 TCAGAATAATCATAGCTAGTACTCCG 57.730 38.462 0.00 0.00 0.00 4.63
918 1069 1.761198 GGGCCGACAGTTCTACCTAAT 59.239 52.381 0.00 0.00 0.00 1.73
935 1086 3.130693 CGCTACTTATATAGTGGAGGGGC 59.869 52.174 0.00 0.00 37.53 5.80
936 1087 4.985538 CGCTACTTATATAGTGGAGGGG 57.014 50.000 0.00 0.00 37.53 4.79
988 1141 1.376609 CCCGCCATTTTCCTTCTCGG 61.377 60.000 0.00 0.00 35.60 4.63
1241 2324 0.838122 ACTCCCCCTGGTCAAGACAG 60.838 60.000 2.29 0.00 35.74 3.51
1360 2452 1.000396 GCACCCTCTTCCCTTGCAT 60.000 57.895 0.00 0.00 33.24 3.96
1392 2491 0.532862 ACTTCACTTGGTGCTCCACG 60.533 55.000 7.09 8.48 44.22 4.94
1553 2687 8.783093 TGAAGTAGTAGTTTCAAATCCACAATG 58.217 33.333 0.00 0.00 30.84 2.82
1576 2710 2.297701 GCAGGTCTGGAAACTTGTGAA 58.702 47.619 0.00 0.00 0.00 3.18
1644 2972 1.934463 CGCGACACAGCTTCAGTTT 59.066 52.632 0.00 0.00 34.40 2.66
1661 2989 3.181526 CGATTTCTCCTCTGTTTCTTGCG 60.182 47.826 0.00 0.00 0.00 4.85
1702 3035 3.112709 GCTCGACGGTTGGCACTC 61.113 66.667 0.00 0.00 0.00 3.51
1762 3106 0.388649 CCTTCTGTCTCCGGTTGTCG 60.389 60.000 0.00 0.00 38.88 4.35
1780 3124 3.767806 GGTCCGGACGAACCTCCC 61.768 72.222 27.68 8.17 36.31 4.30
1842 3186 1.577736 CTTCTCTGGTCCTCCCATGT 58.422 55.000 0.00 0.00 44.15 3.21
2046 3399 6.009589 ACCATGTGGACAGAATCAAATTACA 58.990 36.000 5.96 0.00 38.94 2.41
2047 3400 6.375455 AGACCATGTGGACAGAATCAAATTAC 59.625 38.462 5.96 0.00 38.94 1.89
2101 3454 3.107661 GTGCTTGTTGCCGCATGC 61.108 61.111 7.91 7.91 42.00 4.06
2121 3476 6.141790 AGACTTATATTTAGGAACGGGGAGT 58.858 40.000 0.00 0.00 0.00 3.85
2123 3478 7.092757 ACAAAGACTTATATTTAGGAACGGGGA 60.093 37.037 0.00 0.00 0.00 4.81
2124 3479 7.052248 ACAAAGACTTATATTTAGGAACGGGG 58.948 38.462 0.00 0.00 0.00 5.73
2125 3480 9.257651 CTACAAAGACTTATATTTAGGAACGGG 57.742 37.037 0.00 0.00 0.00 5.28
2159 3514 9.882996 CATGCATTCGTATGTTATAGTTCATTT 57.117 29.630 0.00 0.00 34.12 2.32
2160 3515 9.056005 ACATGCATTCGTATGTTATAGTTCATT 57.944 29.630 0.00 0.00 44.98 2.57
2161 3516 8.607441 ACATGCATTCGTATGTTATAGTTCAT 57.393 30.769 0.00 0.00 44.98 2.57
2162 3517 9.191995 CTACATGCATTCGTATGTTATAGTTCA 57.808 33.333 0.00 0.00 44.98 3.18
2163 3518 9.406828 TCTACATGCATTCGTATGTTATAGTTC 57.593 33.333 0.00 0.00 44.98 3.01
2164 3519 9.193133 GTCTACATGCATTCGTATGTTATAGTT 57.807 33.333 0.00 0.00 44.98 2.24
2166 3521 8.742554 TGTCTACATGCATTCGTATGTTATAG 57.257 34.615 0.00 2.28 44.98 1.31
2169 3524 9.705290 AATATGTCTACATGCATTCGTATGTTA 57.295 29.630 0.00 0.00 44.98 2.41
2170 3525 8.607441 AATATGTCTACATGCATTCGTATGTT 57.393 30.769 0.00 0.00 44.98 2.71
2174 3529 9.974980 TCTAAAATATGTCTACATGCATTCGTA 57.025 29.630 0.00 0.00 37.15 3.43
2175 3530 8.887036 TCTAAAATATGTCTACATGCATTCGT 57.113 30.769 0.00 0.00 37.15 3.85
2180 3535 8.257306 TCACACTCTAAAATATGTCTACATGCA 58.743 33.333 5.85 0.00 37.15 3.96
2181 3536 8.648557 TCACACTCTAAAATATGTCTACATGC 57.351 34.615 5.85 0.00 37.15 4.06
2201 3556 6.073222 ACGGAGTAAAATGAGTGAATTCACAC 60.073 38.462 33.92 28.95 45.13 3.82
2202 3557 5.995282 ACGGAGTAAAATGAGTGAATTCACA 59.005 36.000 33.92 19.07 45.13 3.58
2212 3567 7.416438 AGGTGACTACATACGGAGTAAAATGAG 60.416 40.741 0.00 0.00 44.15 2.90
2214 3569 6.475727 CAGGTGACTACATACGGAGTAAAATG 59.524 42.308 0.00 0.00 44.16 2.32
2215 3570 6.154021 ACAGGTGACTACATACGGAGTAAAAT 59.846 38.462 0.00 0.00 44.16 1.82
2218 3573 4.592942 ACAGGTGACTACATACGGAGTAA 58.407 43.478 0.00 0.00 44.16 2.24
2219 3574 4.226427 ACAGGTGACTACATACGGAGTA 57.774 45.455 0.00 0.00 44.98 2.59
2220 3575 3.083122 ACAGGTGACTACATACGGAGT 57.917 47.619 0.00 0.00 43.06 3.85
2221 3576 3.442625 TCAACAGGTGACTACATACGGAG 59.557 47.826 0.00 0.00 40.21 4.63
2222 3577 3.423749 TCAACAGGTGACTACATACGGA 58.576 45.455 0.00 0.00 40.21 4.69
2224 3579 6.100004 AGATTTCAACAGGTGACTACATACG 58.900 40.000 0.00 0.00 40.21 3.06
2225 3580 7.324178 AGAGATTTCAACAGGTGACTACATAC 58.676 38.462 0.00 0.00 40.21 2.39
2227 3582 6.365970 AGAGATTTCAACAGGTGACTACAT 57.634 37.500 0.00 0.00 40.21 2.29
2229 3584 7.159322 TCTAGAGATTTCAACAGGTGACTAC 57.841 40.000 0.00 0.00 40.21 2.73
2231 3586 6.672266 TTCTAGAGATTTCAACAGGTGACT 57.328 37.500 0.00 0.00 46.44 3.41
2232 3587 7.117092 GTCTTTCTAGAGATTTCAACAGGTGAC 59.883 40.741 0.00 0.00 35.39 3.67
2234 3589 7.158021 AGTCTTTCTAGAGATTTCAACAGGTG 58.842 38.462 0.00 0.00 0.00 4.00
2235 3590 7.309770 AGTCTTTCTAGAGATTTCAACAGGT 57.690 36.000 0.00 0.00 0.00 4.00
2236 3591 9.883142 ATAAGTCTTTCTAGAGATTTCAACAGG 57.117 33.333 0.00 0.00 29.76 4.00
2249 3604 9.595823 TCCGTTTCCAAATATAAGTCTTTCTAG 57.404 33.333 0.00 0.00 0.00 2.43
2250 3605 9.595823 CTCCGTTTCCAAATATAAGTCTTTCTA 57.404 33.333 0.00 0.00 0.00 2.10
2252 3607 7.551617 TCCTCCGTTTCCAAATATAAGTCTTTC 59.448 37.037 0.00 0.00 0.00 2.62
2254 3609 6.954232 TCCTCCGTTTCCAAATATAAGTCTT 58.046 36.000 0.00 0.00 0.00 3.01
2255 3610 6.156429 ACTCCTCCGTTTCCAAATATAAGTCT 59.844 38.462 0.00 0.00 0.00 3.24
2258 3613 7.498443 ACTACTCCTCCGTTTCCAAATATAAG 58.502 38.462 0.00 0.00 0.00 1.73
2259 3614 7.427989 ACTACTCCTCCGTTTCCAAATATAA 57.572 36.000 0.00 0.00 0.00 0.98
2260 3615 7.427989 AACTACTCCTCCGTTTCCAAATATA 57.572 36.000 0.00 0.00 0.00 0.86
2262 3617 5.750352 AACTACTCCTCCGTTTCCAAATA 57.250 39.130 0.00 0.00 0.00 1.40
2264 3619 5.246656 TGATAACTACTCCTCCGTTTCCAAA 59.753 40.000 0.00 0.00 0.00 3.28
2266 3621 4.346730 TGATAACTACTCCTCCGTTTCCA 58.653 43.478 0.00 0.00 0.00 3.53
2267 3622 4.996788 TGATAACTACTCCTCCGTTTCC 57.003 45.455 0.00 0.00 0.00 3.13
2268 3623 5.963594 ACTTGATAACTACTCCTCCGTTTC 58.036 41.667 0.00 0.00 0.00 2.78
2269 3624 5.479375 TGACTTGATAACTACTCCTCCGTTT 59.521 40.000 0.00 0.00 0.00 3.60
2270 3625 5.014858 TGACTTGATAACTACTCCTCCGTT 58.985 41.667 0.00 0.00 0.00 4.44
2271 3626 4.597004 TGACTTGATAACTACTCCTCCGT 58.403 43.478 0.00 0.00 0.00 4.69
2272 3627 4.641094 ACTGACTTGATAACTACTCCTCCG 59.359 45.833 0.00 0.00 0.00 4.63
2274 3629 7.868906 AGTACTGACTTGATAACTACTCCTC 57.131 40.000 0.00 0.00 28.61 3.71
2275 3630 8.770322 TCTAGTACTGACTTGATAACTACTCCT 58.230 37.037 5.39 0.00 37.10 3.69
2276 3631 8.961294 TCTAGTACTGACTTGATAACTACTCC 57.039 38.462 5.39 0.00 37.10 3.85
2306 3700 9.927668 CAAATCCAAAAACCAGTAAATCATACT 57.072 29.630 0.00 0.00 0.00 2.12
2350 3744 6.651086 AGCCCTTTTCCTAGTAGTGTATTTC 58.349 40.000 0.00 0.00 0.00 2.17
2356 3750 7.607250 CATCTATAGCCCTTTTCCTAGTAGTG 58.393 42.308 0.00 0.00 0.00 2.74
2357 3751 7.784470 CATCTATAGCCCTTTTCCTAGTAGT 57.216 40.000 0.00 0.00 0.00 2.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.