Multiple sequence alignment - TraesCS2B01G512300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G512300 chr2B 100.000 4361 0 0 2890 7250 707962398 707958038 0.000000e+00 8054.0
1 TraesCS2B01G512300 chr2B 100.000 2309 0 0 1 2309 707965287 707962979 0.000000e+00 4265.0
2 TraesCS2B01G512300 chr2B 80.276 1303 209 30 5405 6671 707621306 707620016 0.000000e+00 939.0
3 TraesCS2B01G512300 chr2B 78.629 1240 210 33 5395 6595 707656934 707655711 0.000000e+00 771.0
4 TraesCS2B01G512300 chr2B 83.804 815 105 12 5411 6203 756637092 756637901 0.000000e+00 749.0
5 TraesCS2B01G512300 chr2B 82.776 807 116 15 5416 6203 756706139 756706941 0.000000e+00 699.0
6 TraesCS2B01G512300 chr2B 76.865 925 202 8 1073 1991 707533134 707532216 5.020000e-141 512.0
7 TraesCS2B01G512300 chr2B 78.253 538 91 16 4478 5011 707622273 707621758 9.070000e-84 322.0
8 TraesCS2B01G512300 chr2B 80.362 387 66 8 4545 4925 756636554 756636936 1.190000e-72 285.0
9 TraesCS2B01G512300 chr2B 75.993 579 113 19 6030 6595 707518543 707517978 7.160000e-70 276.0
10 TraesCS2B01G512300 chr2B 78.271 428 76 9 4501 4925 756705564 756705977 7.220000e-65 259.0
11 TraesCS2B01G512300 chr2B 81.250 272 48 2 4132 4401 757882852 757883122 4.400000e-52 217.0
12 TraesCS2B01G512300 chr2B 86.735 98 12 1 848 945 757879640 757879736 2.770000e-19 108.0
13 TraesCS2B01G512300 chr2B 88.136 59 5 2 542 600 757879387 757879443 1.310000e-07 69.4
14 TraesCS2B01G512300 chr2B 85.294 68 7 3 4068 4134 636470225 636470290 4.690000e-07 67.6
15 TraesCS2B01G512300 chr2A 94.245 1981 77 13 15 1991 721068014 721066067 0.000000e+00 2992.0
16 TraesCS2B01G512300 chr2A 94.305 1352 46 5 4132 5483 721066082 721064762 0.000000e+00 2041.0
17 TraesCS2B01G512300 chr2A 95.974 1068 36 3 5974 7035 721063058 721061992 0.000000e+00 1727.0
18 TraesCS2B01G512300 chr2A 96.334 491 16 2 5476 5965 721063676 721063187 0.000000e+00 806.0
19 TraesCS2B01G512300 chr2A 78.704 1235 210 40 5395 6596 720584420 720583206 0.000000e+00 774.0
20 TraesCS2B01G512300 chr2A 78.215 1244 215 34 5391 6595 720574908 720573682 0.000000e+00 745.0
21 TraesCS2B01G512300 chr2A 83.313 809 107 15 5417 6203 750208859 750208057 0.000000e+00 721.0
22 TraesCS2B01G512300 chr2A 82.062 747 106 18 5416 6140 749971808 749972548 4.810000e-171 612.0
23 TraesCS2B01G512300 chr2A 78.512 484 85 15 4540 5018 720575894 720575425 4.250000e-77 300.0
24 TraesCS2B01G512300 chr2A 83.471 242 35 4 6745 6984 720583530 720583292 3.400000e-53 220.0
25 TraesCS2B01G512300 chr2A 84.615 65 9 1 4254 4317 52765290 52765226 6.070000e-06 63.9
26 TraesCS2B01G512300 chr7B 98.550 1241 17 1 2890 4130 484273930 484275169 0.000000e+00 2191.0
27 TraesCS2B01G512300 chr7B 98.305 236 4 0 2074 2309 484273565 484273800 1.460000e-111 414.0
28 TraesCS2B01G512300 chr3A 98.061 1238 23 1 2890 4127 562894213 562895449 0.000000e+00 2152.0
29 TraesCS2B01G512300 chr3A 92.275 1165 90 0 2890 4054 550460034 550458870 0.000000e+00 1653.0
30 TraesCS2B01G512300 chr3A 95.851 241 9 1 2069 2309 562893844 562894083 8.820000e-104 388.0
31 TraesCS2B01G512300 chr5B 96.213 1241 47 0 2890 4130 70694365 70695605 0.000000e+00 2032.0
32 TraesCS2B01G512300 chr5B 93.450 229 15 0 2081 2309 70694007 70694235 2.500000e-89 340.0
33 TraesCS2B01G512300 chr1B 95.433 1248 57 0 2890 4137 46376390 46375143 0.000000e+00 1989.0
34 TraesCS2B01G512300 chr1B 92.208 231 18 0 2078 2308 46376743 46376513 1.950000e-85 327.0
35 TraesCS2B01G512300 chr6A 93.209 1237 84 0 2894 4130 77898311 77899547 0.000000e+00 1820.0
36 TraesCS2B01G512300 chr6A 92.438 1243 89 5 2890 4130 78032582 78033821 0.000000e+00 1770.0
37 TraesCS2B01G512300 chr7D 91.842 1238 92 5 2890 4127 173894214 173895442 0.000000e+00 1718.0
38 TraesCS2B01G512300 chr7D 92.641 231 15 2 2079 2308 3184014 3183785 1.510000e-86 331.0
39 TraesCS2B01G512300 chr7D 92.241 232 16 2 2079 2309 596066853 596066623 1.950000e-85 327.0
40 TraesCS2B01G512300 chr7A 91.210 1240 107 2 2890 4129 425313017 425314254 0.000000e+00 1685.0
41 TraesCS2B01G512300 chr7A 98.462 65 0 1 1990 2054 139788216 139788153 5.940000e-21 113.0
42 TraesCS2B01G512300 chr2D 85.823 1051 119 16 729 1768 586265787 586264756 0.000000e+00 1088.0
43 TraesCS2B01G512300 chr2D 79.005 1186 198 33 5392 6540 586294016 586292845 0.000000e+00 763.0
44 TraesCS2B01G512300 chr2D 83.558 815 106 14 5411 6203 619147426 619148234 0.000000e+00 737.0
45 TraesCS2B01G512300 chr2D 79.543 787 121 20 5201 5955 586056062 586056840 6.440000e-145 525.0
46 TraesCS2B01G512300 chr2D 89.753 283 22 2 4198 4474 586262686 586262405 8.950000e-94 355.0
47 TraesCS2B01G512300 chr2D 91.667 240 20 0 1752 1991 586264649 586264410 4.190000e-87 333.0
48 TraesCS2B01G512300 chr2D 78.091 461 87 12 4471 4925 619146818 619147270 5.540000e-71 279.0
49 TraesCS2B01G512300 chr2D 86.900 229 30 0 6745 6973 586293118 586292890 2.600000e-64 257.0
50 TraesCS2B01G512300 chr2D 76.898 303 62 7 4131 4427 610887238 610887538 1.620000e-36 165.0
51 TraesCS2B01G512300 chr2D 97.222 72 2 0 4132 4203 586264425 586264354 9.880000e-24 122.0
52 TraesCS2B01G512300 chrUn 80.000 1245 214 24 5397 6612 74781466 74782704 0.000000e+00 887.0
53 TraesCS2B01G512300 chrUn 75.076 983 210 29 987 1953 74777573 74778536 6.720000e-115 425.0
54 TraesCS2B01G512300 chrUn 91.810 232 19 0 2078 2309 95231872 95231641 2.520000e-84 324.0
55 TraesCS2B01G512300 chrUn 78.808 453 89 7 4542 4991 74780743 74781191 1.530000e-76 298.0
56 TraesCS2B01G512300 chr6D 75.348 1006 222 22 959 1953 446623649 446622659 1.840000e-125 460.0
57 TraesCS2B01G512300 chr6D 78.517 526 88 22 4502 5012 446621911 446621396 9.070000e-84 322.0
58 TraesCS2B01G512300 chr6B 93.421 228 15 0 2082 2309 10691737 10691510 9.010000e-89 339.0
59 TraesCS2B01G512300 chr6B 83.158 285 44 4 4730 5012 675450281 675449999 2.600000e-64 257.0
60 TraesCS2B01G512300 chr1D 90.830 229 21 0 2078 2306 136948195 136948423 2.540000e-79 307.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G512300 chr2B 707958038 707965287 7249 True 6159.500000 8054 100.000000 1 7250 2 chr2B.!!$R5 7249
1 TraesCS2B01G512300 chr2B 707655711 707656934 1223 True 771.000000 771 78.629000 5395 6595 1 chr2B.!!$R3 1200
2 TraesCS2B01G512300 chr2B 707620016 707622273 2257 True 630.500000 939 79.264500 4478 6671 2 chr2B.!!$R4 2193
3 TraesCS2B01G512300 chr2B 756636554 756637901 1347 False 517.000000 749 82.083000 4545 6203 2 chr2B.!!$F2 1658
4 TraesCS2B01G512300 chr2B 707532216 707533134 918 True 512.000000 512 76.865000 1073 1991 1 chr2B.!!$R2 918
5 TraesCS2B01G512300 chr2B 756705564 756706941 1377 False 479.000000 699 80.523500 4501 6203 2 chr2B.!!$F3 1702
6 TraesCS2B01G512300 chr2B 707517978 707518543 565 True 276.000000 276 75.993000 6030 6595 1 chr2B.!!$R1 565
7 TraesCS2B01G512300 chr2A 721061992 721068014 6022 True 1891.500000 2992 95.214500 15 7035 4 chr2A.!!$R5 7020
8 TraesCS2B01G512300 chr2A 750208057 750208859 802 True 721.000000 721 83.313000 5417 6203 1 chr2A.!!$R2 786
9 TraesCS2B01G512300 chr2A 749971808 749972548 740 False 612.000000 612 82.062000 5416 6140 1 chr2A.!!$F1 724
10 TraesCS2B01G512300 chr2A 720573682 720575894 2212 True 522.500000 745 78.363500 4540 6595 2 chr2A.!!$R3 2055
11 TraesCS2B01G512300 chr2A 720583206 720584420 1214 True 497.000000 774 81.087500 5395 6984 2 chr2A.!!$R4 1589
12 TraesCS2B01G512300 chr7B 484273565 484275169 1604 False 1302.500000 2191 98.427500 2074 4130 2 chr7B.!!$F1 2056
13 TraesCS2B01G512300 chr3A 550458870 550460034 1164 True 1653.000000 1653 92.275000 2890 4054 1 chr3A.!!$R1 1164
14 TraesCS2B01G512300 chr3A 562893844 562895449 1605 False 1270.000000 2152 96.956000 2069 4127 2 chr3A.!!$F1 2058
15 TraesCS2B01G512300 chr5B 70694007 70695605 1598 False 1186.000000 2032 94.831500 2081 4130 2 chr5B.!!$F1 2049
16 TraesCS2B01G512300 chr1B 46375143 46376743 1600 True 1158.000000 1989 93.820500 2078 4137 2 chr1B.!!$R1 2059
17 TraesCS2B01G512300 chr6A 77898311 77899547 1236 False 1820.000000 1820 93.209000 2894 4130 1 chr6A.!!$F1 1236
18 TraesCS2B01G512300 chr6A 78032582 78033821 1239 False 1770.000000 1770 92.438000 2890 4130 1 chr6A.!!$F2 1240
19 TraesCS2B01G512300 chr7D 173894214 173895442 1228 False 1718.000000 1718 91.842000 2890 4127 1 chr7D.!!$F1 1237
20 TraesCS2B01G512300 chr7A 425313017 425314254 1237 False 1685.000000 1685 91.210000 2890 4129 1 chr7A.!!$F1 1239
21 TraesCS2B01G512300 chr2D 586056062 586056840 778 False 525.000000 525 79.543000 5201 5955 1 chr2D.!!$F1 754
22 TraesCS2B01G512300 chr2D 586292845 586294016 1171 True 510.000000 763 82.952500 5392 6973 2 chr2D.!!$R2 1581
23 TraesCS2B01G512300 chr2D 619146818 619148234 1416 False 508.000000 737 80.824500 4471 6203 2 chr2D.!!$F3 1732
24 TraesCS2B01G512300 chr2D 586262405 586265787 3382 True 474.500000 1088 91.116250 729 4474 4 chr2D.!!$R1 3745
25 TraesCS2B01G512300 chrUn 74777573 74782704 5131 False 536.666667 887 77.961333 987 6612 3 chrUn.!!$F1 5625
26 TraesCS2B01G512300 chr6D 446621396 446623649 2253 True 391.000000 460 76.932500 959 5012 2 chr6D.!!$R1 4053

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
719 727 0.332632 AGCAAGCATACCCACCACAT 59.667 50.000 0.00 0.0 0.00 3.21 F
720 728 0.457035 GCAAGCATACCCACCACATG 59.543 55.000 0.00 0.0 0.00 3.21 F
723 731 0.991146 AGCATACCCACCACATGACA 59.009 50.000 0.00 0.0 0.00 3.58 F
2068 2213 1.417517 TCAACTGGCTTGCTGAAGAGA 59.582 47.619 0.00 0.0 0.00 3.10 F
2070 2215 1.346062 ACTGGCTTGCTGAAGAGAGA 58.654 50.000 0.00 0.0 0.00 3.10 F
3097 3242 1.406898 TGGTCGAGTCTGCATCAGATC 59.593 52.381 0.00 0.0 42.73 2.75 F
4228 6047 3.814842 CCAGACAAGTTCTTGCACATACA 59.185 43.478 11.79 0.0 28.96 2.29 F
4767 8428 2.171341 AGGAGAGAAAACCAGAACGC 57.829 50.000 0.00 0.0 0.00 4.84 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2069 2214 0.847373 GGGAGGGAGGGGAAAGATTC 59.153 60.000 0.00 0.0 0.00 2.52 R
2070 2215 0.988678 CGGGAGGGAGGGGAAAGATT 60.989 60.000 0.00 0.0 0.00 2.40 R
2071 2216 1.384643 CGGGAGGGAGGGGAAAGAT 60.385 63.158 0.00 0.0 0.00 2.40 R
3541 3687 2.595463 TCGACCGACGGAACCACT 60.595 61.111 23.38 0.0 42.82 4.00 R
4139 4285 6.262944 TGCATTTCAGCACTTTCTTTCTCTTA 59.737 34.615 0.00 0.0 40.11 2.10 R
4243 6062 0.108615 GCACTCGGCAGTACACTCAT 60.109 55.000 0.00 0.0 43.97 2.90 R
6150 11415 0.036671 TGTGCTGAGGTGAGCTGATG 60.037 55.000 0.00 0.0 39.90 3.07 R
6731 12006 1.066430 TCAACATCTTACCACGCCTCC 60.066 52.381 0.00 0.0 0.00 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
75 76 1.428448 TGGTTTGATCTTCAGCGTCG 58.572 50.000 0.00 0.00 0.00 5.12
80 81 2.544480 TGATCTTCAGCGTCGTACAG 57.456 50.000 0.00 0.00 0.00 2.74
86 87 2.273370 TCAGCGTCGTACAGAAATCC 57.727 50.000 0.00 0.00 0.00 3.01
98 99 2.095059 ACAGAAATCCGATGCAAAGTGC 60.095 45.455 0.00 0.00 45.29 4.40
116 117 5.215252 AGTGCCATACTTATAGCATCGTT 57.785 39.130 0.00 0.00 35.67 3.85
121 122 6.147656 TGCCATACTTATAGCATCGTTCATTG 59.852 38.462 0.00 0.00 0.00 2.82
135 136 7.427606 GCATCGTTCATTGAAGATCAAGTTTAG 59.572 37.037 0.00 0.00 40.05 1.85
146 147 8.524487 TGAAGATCAAGTTTAGTCTAGAAGACC 58.476 37.037 0.00 0.00 46.18 3.85
148 149 5.056894 TCAAGTTTAGTCTAGAAGACCGC 57.943 43.478 0.00 0.00 46.18 5.68
174 175 7.133891 AGTGGTGTTAATTCAGAAATTCGAG 57.866 36.000 0.00 0.00 36.49 4.04
202 203 5.838521 TGATCAGTGGTATATAGAACAGCCA 59.161 40.000 0.00 0.00 0.00 4.75
217 218 2.235016 CAGCCACCTAGGAGCTAGTAG 58.765 57.143 24.38 12.68 41.22 2.57
227 228 3.301274 AGGAGCTAGTAGATGACCCAAC 58.699 50.000 0.00 0.00 0.00 3.77
290 291 7.784470 ATAGTTCTCAGTAAAGTTCTCACCT 57.216 36.000 0.00 0.00 0.00 4.00
310 312 7.406916 TCACCTTGGCCAATTTTATTCTACTA 58.593 34.615 20.85 0.00 0.00 1.82
311 313 7.338449 TCACCTTGGCCAATTTTATTCTACTAC 59.662 37.037 20.85 0.00 0.00 2.73
312 314 7.339466 CACCTTGGCCAATTTTATTCTACTACT 59.661 37.037 20.85 0.00 0.00 2.57
418 420 2.105128 ATAGCGCACCGTCAGCTC 59.895 61.111 11.47 0.00 41.88 4.09
419 421 2.710902 ATAGCGCACCGTCAGCTCA 61.711 57.895 11.47 0.00 41.88 4.26
420 422 2.021068 ATAGCGCACCGTCAGCTCAT 62.021 55.000 11.47 0.00 41.88 2.90
421 423 2.613739 TAGCGCACCGTCAGCTCATC 62.614 60.000 11.47 0.00 41.88 2.92
422 424 2.125952 CGCACCGTCAGCTCATCA 60.126 61.111 0.00 0.00 0.00 3.07
423 425 1.737735 CGCACCGTCAGCTCATCAA 60.738 57.895 0.00 0.00 0.00 2.57
424 426 1.291184 CGCACCGTCAGCTCATCAAA 61.291 55.000 0.00 0.00 0.00 2.69
425 427 0.874390 GCACCGTCAGCTCATCAAAA 59.126 50.000 0.00 0.00 0.00 2.44
426 428 1.470098 GCACCGTCAGCTCATCAAAAT 59.530 47.619 0.00 0.00 0.00 1.82
427 429 2.730090 GCACCGTCAGCTCATCAAAATG 60.730 50.000 0.00 0.00 0.00 2.32
428 430 2.485426 CACCGTCAGCTCATCAAAATGT 59.515 45.455 0.00 0.00 34.32 2.71
429 431 2.744202 ACCGTCAGCTCATCAAAATGTC 59.256 45.455 0.00 0.00 34.32 3.06
430 432 2.222886 CCGTCAGCTCATCAAAATGTCG 60.223 50.000 0.00 0.00 34.32 4.35
431 433 2.413112 CGTCAGCTCATCAAAATGTCGT 59.587 45.455 0.00 0.00 34.32 4.34
432 434 3.612423 CGTCAGCTCATCAAAATGTCGTA 59.388 43.478 0.00 0.00 34.32 3.43
433 435 4.091365 CGTCAGCTCATCAAAATGTCGTAA 59.909 41.667 0.00 0.00 34.32 3.18
434 436 5.389411 CGTCAGCTCATCAAAATGTCGTAAA 60.389 40.000 0.00 0.00 34.32 2.01
435 437 6.370593 GTCAGCTCATCAAAATGTCGTAAAA 58.629 36.000 0.00 0.00 34.32 1.52
436 438 6.303259 GTCAGCTCATCAAAATGTCGTAAAAC 59.697 38.462 0.00 0.00 34.32 2.43
540 542 1.474478 TGTCAAACAACACACGGCATT 59.526 42.857 0.00 0.00 0.00 3.56
542 544 3.040099 GTCAAACAACACACGGCATTAC 58.960 45.455 0.00 0.00 0.00 1.89
547 549 1.069296 CAACACACGGCATTACCACAG 60.069 52.381 0.00 0.00 39.03 3.66
562 564 1.007271 ACAGACGTCGCTGTTCCAG 60.007 57.895 10.46 0.00 46.42 3.86
715 723 3.200522 GCAGCAAGCATACCCACC 58.799 61.111 0.00 0.00 44.79 4.61
716 724 1.678635 GCAGCAAGCATACCCACCA 60.679 57.895 0.00 0.00 44.79 4.17
718 726 0.608856 CAGCAAGCATACCCACCACA 60.609 55.000 0.00 0.00 0.00 4.17
719 727 0.332632 AGCAAGCATACCCACCACAT 59.667 50.000 0.00 0.00 0.00 3.21
720 728 0.457035 GCAAGCATACCCACCACATG 59.543 55.000 0.00 0.00 0.00 3.21
721 729 1.954733 GCAAGCATACCCACCACATGA 60.955 52.381 0.00 0.00 0.00 3.07
722 730 1.745087 CAAGCATACCCACCACATGAC 59.255 52.381 0.00 0.00 0.00 3.06
723 731 0.991146 AGCATACCCACCACATGACA 59.009 50.000 0.00 0.00 0.00 3.58
724 732 1.565759 AGCATACCCACCACATGACAT 59.434 47.619 0.00 0.00 0.00 3.06
725 733 1.677576 GCATACCCACCACATGACATG 59.322 52.381 14.02 14.02 0.00 3.21
726 734 2.683447 GCATACCCACCACATGACATGA 60.683 50.000 22.19 0.00 0.00 3.07
727 735 3.824133 CATACCCACCACATGACATGAT 58.176 45.455 22.19 3.71 0.00 2.45
767 775 2.251818 CCTCTCACTCCAGACTCCAAA 58.748 52.381 0.00 0.00 0.00 3.28
866 877 2.930385 CTACTGGCCGGCCATCTGTG 62.930 65.000 46.65 35.27 46.15 3.66
879 891 3.332919 CCATCTGTGCTATGGTCTATGC 58.667 50.000 0.00 0.00 39.30 3.14
893 905 2.101582 GTCTATGCCGACCTTGATGTCT 59.898 50.000 0.00 0.00 32.97 3.41
909 921 9.347240 CCTTGATGTCTTTTATCCATATCACTT 57.653 33.333 0.00 0.00 0.00 3.16
1059 1075 6.889301 TTCTTGAGTTCATTCTGCAAATCT 57.111 33.333 0.00 0.00 0.00 2.40
1118 1134 2.611518 CCACACTCTCATCTCCGAAAC 58.388 52.381 0.00 0.00 0.00 2.78
1345 1361 5.954296 ATGGATGACAGCAAGCAATATAC 57.046 39.130 0.00 0.00 0.00 1.47
1594 1613 4.020617 CGCCAACCCCTCAGCTCA 62.021 66.667 0.00 0.00 0.00 4.26
1989 2134 6.859112 AGCTCTTCTAAAGGATGTAAGACA 57.141 37.500 0.00 0.00 0.00 3.41
1990 2135 7.246171 AGCTCTTCTAAAGGATGTAAGACAA 57.754 36.000 0.00 0.00 0.00 3.18
1991 2136 7.100409 AGCTCTTCTAAAGGATGTAAGACAAC 58.900 38.462 0.00 0.00 0.00 3.32
1992 2137 7.038658 AGCTCTTCTAAAGGATGTAAGACAACT 60.039 37.037 0.00 0.00 0.00 3.16
1993 2138 7.604545 GCTCTTCTAAAGGATGTAAGACAACTT 59.395 37.037 0.00 0.00 39.81 2.66
1994 2139 9.145865 CTCTTCTAAAGGATGTAAGACAACTTC 57.854 37.037 0.00 0.00 37.53 3.01
1995 2140 8.871125 TCTTCTAAAGGATGTAAGACAACTTCT 58.129 33.333 0.00 0.00 37.53 2.85
1998 2143 9.924650 TCTAAAGGATGTAAGACAACTTCTAAC 57.075 33.333 0.00 0.00 37.53 2.34
1999 2144 7.981102 AAAGGATGTAAGACAACTTCTAACC 57.019 36.000 0.00 0.00 37.53 2.85
2000 2145 6.681729 AGGATGTAAGACAACTTCTAACCA 57.318 37.500 0.00 0.00 37.53 3.67
2001 2146 6.465084 AGGATGTAAGACAACTTCTAACCAC 58.535 40.000 0.00 0.00 37.53 4.16
2002 2147 6.270231 AGGATGTAAGACAACTTCTAACCACT 59.730 38.462 0.00 0.00 37.53 4.00
2003 2148 6.935208 GGATGTAAGACAACTTCTAACCACTT 59.065 38.462 0.00 0.00 37.53 3.16
2004 2149 8.092687 GGATGTAAGACAACTTCTAACCACTTA 58.907 37.037 0.00 0.00 37.53 2.24
2005 2150 9.141400 GATGTAAGACAACTTCTAACCACTTAG 57.859 37.037 0.00 0.00 37.53 2.18
2006 2151 7.439381 TGTAAGACAACTTCTAACCACTTAGG 58.561 38.462 0.00 0.00 39.31 2.69
2007 2152 5.485209 AGACAACTTCTAACCACTTAGGG 57.515 43.478 0.00 0.00 35.22 3.53
2008 2153 4.906060 AGACAACTTCTAACCACTTAGGGT 59.094 41.667 0.00 0.00 45.04 4.34
2009 2154 7.071572 TAAGACAACTTCTAACCACTTAGGGTT 59.928 37.037 9.42 9.42 43.65 4.11
2039 2184 8.973835 TTTGCGAATAATTTTAACCACTTAGG 57.026 30.769 0.00 0.00 45.67 2.69
2055 2200 7.145932 CCACTTAGGTTAAATCTTCAACTGG 57.854 40.000 0.00 0.00 0.00 4.00
2056 2201 6.349363 CCACTTAGGTTAAATCTTCAACTGGC 60.349 42.308 0.00 0.00 0.00 4.85
2057 2202 6.431234 CACTTAGGTTAAATCTTCAACTGGCT 59.569 38.462 0.00 0.00 0.00 4.75
2058 2203 7.004691 ACTTAGGTTAAATCTTCAACTGGCTT 58.995 34.615 0.00 0.00 0.00 4.35
2059 2204 5.712152 AGGTTAAATCTTCAACTGGCTTG 57.288 39.130 0.00 0.00 0.00 4.01
2060 2205 4.021981 AGGTTAAATCTTCAACTGGCTTGC 60.022 41.667 0.00 0.00 0.00 4.01
2061 2206 4.021981 GGTTAAATCTTCAACTGGCTTGCT 60.022 41.667 0.00 0.00 0.00 3.91
2062 2207 3.655276 AAATCTTCAACTGGCTTGCTG 57.345 42.857 0.00 0.00 0.00 4.41
2063 2208 2.574006 ATCTTCAACTGGCTTGCTGA 57.426 45.000 0.00 0.00 0.00 4.26
2064 2209 2.346766 TCTTCAACTGGCTTGCTGAA 57.653 45.000 0.00 0.00 0.00 3.02
2065 2210 2.224606 TCTTCAACTGGCTTGCTGAAG 58.775 47.619 12.94 12.94 43.97 3.02
2066 2211 2.224606 CTTCAACTGGCTTGCTGAAGA 58.775 47.619 13.56 0.00 44.93 2.87
2067 2212 1.888215 TCAACTGGCTTGCTGAAGAG 58.112 50.000 0.00 0.00 0.00 2.85
2068 2213 1.417517 TCAACTGGCTTGCTGAAGAGA 59.582 47.619 0.00 0.00 0.00 3.10
2069 2214 1.805345 CAACTGGCTTGCTGAAGAGAG 59.195 52.381 0.00 0.00 0.00 3.20
2070 2215 1.346062 ACTGGCTTGCTGAAGAGAGA 58.654 50.000 0.00 0.00 0.00 3.10
2071 2216 1.696336 ACTGGCTTGCTGAAGAGAGAA 59.304 47.619 0.00 0.00 0.00 2.87
2072 2217 2.305343 ACTGGCTTGCTGAAGAGAGAAT 59.695 45.455 0.00 0.00 0.00 2.40
2244 2389 2.284699 CTCGTTCCCCCTCCCAGT 60.285 66.667 0.00 0.00 0.00 4.00
3097 3242 1.406898 TGGTCGAGTCTGCATCAGATC 59.593 52.381 0.00 0.00 42.73 2.75
4143 4289 5.371115 CTTTTTCGGCAAAGGATGTAAGA 57.629 39.130 0.00 0.00 31.10 2.10
4227 6046 4.065088 TCCAGACAAGTTCTTGCACATAC 58.935 43.478 11.79 0.00 28.96 2.39
4228 6047 3.814842 CCAGACAAGTTCTTGCACATACA 59.185 43.478 11.79 0.00 28.96 2.29
4229 6048 4.083643 CCAGACAAGTTCTTGCACATACAG 60.084 45.833 11.79 0.00 28.96 2.74
4230 6049 4.751600 CAGACAAGTTCTTGCACATACAGA 59.248 41.667 11.79 0.00 28.96 3.41
4231 6050 5.237127 CAGACAAGTTCTTGCACATACAGAA 59.763 40.000 11.79 0.00 28.96 3.02
4232 6051 6.000219 AGACAAGTTCTTGCACATACAGAAT 59.000 36.000 11.79 0.00 0.00 2.40
4233 6052 7.118245 CAGACAAGTTCTTGCACATACAGAATA 59.882 37.037 11.79 0.00 28.96 1.75
4234 6053 7.661437 AGACAAGTTCTTGCACATACAGAATAA 59.339 33.333 11.79 0.00 0.00 1.40
4235 6054 8.165239 ACAAGTTCTTGCACATACAGAATAAA 57.835 30.769 11.79 0.00 0.00 1.40
4236 6055 8.629158 ACAAGTTCTTGCACATACAGAATAAAA 58.371 29.630 11.79 0.00 0.00 1.52
4237 6056 9.121517 CAAGTTCTTGCACATACAGAATAAAAG 57.878 33.333 1.34 0.00 0.00 2.27
4238 6057 7.308435 AGTTCTTGCACATACAGAATAAAAGC 58.692 34.615 1.34 0.00 0.00 3.51
4239 6058 7.175641 AGTTCTTGCACATACAGAATAAAAGCT 59.824 33.333 1.34 0.00 0.00 3.74
4240 6059 7.452880 TCTTGCACATACAGAATAAAAGCTT 57.547 32.000 0.00 0.00 0.00 3.74
4241 6060 7.885297 TCTTGCACATACAGAATAAAAGCTTT 58.115 30.769 5.69 5.69 0.00 3.51
4242 6061 7.809331 TCTTGCACATACAGAATAAAAGCTTTG 59.191 33.333 13.54 1.85 0.00 2.77
4243 6062 7.213216 TGCACATACAGAATAAAAGCTTTGA 57.787 32.000 13.54 5.36 0.00 2.69
4244 6063 7.829725 TGCACATACAGAATAAAAGCTTTGAT 58.170 30.769 13.54 8.01 0.00 2.57
4245 6064 7.756272 TGCACATACAGAATAAAAGCTTTGATG 59.244 33.333 13.54 9.68 0.00 3.07
4246 6065 7.970061 GCACATACAGAATAAAAGCTTTGATGA 59.030 33.333 13.54 0.00 0.00 2.92
4247 6066 9.499585 CACATACAGAATAAAAGCTTTGATGAG 57.500 33.333 13.54 6.98 0.00 2.90
4248 6067 9.236006 ACATACAGAATAAAAGCTTTGATGAGT 57.764 29.630 13.54 12.17 0.00 3.41
4249 6068 9.499585 CATACAGAATAAAAGCTTTGATGAGTG 57.500 33.333 13.54 11.18 0.00 3.51
4250 6069 7.516198 ACAGAATAAAAGCTTTGATGAGTGT 57.484 32.000 13.54 11.78 0.00 3.55
4251 6070 8.621532 ACAGAATAAAAGCTTTGATGAGTGTA 57.378 30.769 13.54 0.00 0.00 2.90
4252 6071 8.507249 ACAGAATAAAAGCTTTGATGAGTGTAC 58.493 33.333 13.54 0.00 0.00 2.90
4253 6072 8.725148 CAGAATAAAAGCTTTGATGAGTGTACT 58.275 33.333 13.54 0.00 0.00 2.73
4254 6073 8.725148 AGAATAAAAGCTTTGATGAGTGTACTG 58.275 33.333 13.54 0.00 0.00 2.74
4363 6210 4.103013 TGGTTTGGTTAGGGGAACTTAC 57.897 45.455 0.00 0.00 38.21 2.34
4440 7487 3.596046 TCCTGGTATTTGGTCTCCCATTT 59.404 43.478 0.00 0.00 41.49 2.32
4524 8161 9.941325 TTTCATGGTATTTATGCAAGTGAATTT 57.059 25.926 0.00 0.00 0.00 1.82
4543 8180 7.436970 GTGAATTTTCAATTTCTTACCGGTTGT 59.563 33.333 15.04 0.00 39.21 3.32
4766 8427 3.304057 GCAAAGGAGAGAAAACCAGAACG 60.304 47.826 0.00 0.00 0.00 3.95
4767 8428 2.171341 AGGAGAGAAAACCAGAACGC 57.829 50.000 0.00 0.00 0.00 4.84
4827 8488 4.254492 GGAGGCGAAAGTACAGAATTTCT 58.746 43.478 0.00 0.00 34.05 2.52
4952 8613 9.884636 AAAGTGATACTTGTAGCATAACATGTA 57.115 29.630 0.00 12.03 38.66 2.29
5026 8692 9.945904 AACTCTAGAAAAATCCTTAACTTCGAT 57.054 29.630 0.00 0.00 0.00 3.59
5027 8693 9.945904 ACTCTAGAAAAATCCTTAACTTCGATT 57.054 29.630 0.00 0.00 0.00 3.34
5104 8770 7.227910 ACACATTAGTTGTCGTAACCAAGAAAT 59.772 33.333 2.52 0.00 36.00 2.17
5151 8823 6.205464 GGTGTGGATATGTTGATGACTTATGG 59.795 42.308 0.00 0.00 30.99 2.74
5220 9142 7.448748 GGTACCAAATTAGTGAAACATGTCT 57.551 36.000 7.15 0.00 41.43 3.41
5340 9282 3.146847 CTCGGCTCAAAGTTAAAAGGGT 58.853 45.455 0.00 0.00 0.00 4.34
5409 9428 5.808042 TTGCTGCTCAACTGAGAAATATC 57.192 39.130 10.95 0.00 44.74 1.63
5453 9472 3.299503 AGGTGGAAATGAAGTTGCTGTT 58.700 40.909 0.00 0.00 0.00 3.16
5488 10600 8.755977 CAGTAAGGGTTCTAAACAAGGTATAGA 58.244 37.037 0.00 0.00 0.00 1.98
5657 10776 6.579666 ATGTGCTAGTTTGTTGATCACATT 57.420 33.333 0.00 0.00 39.70 2.71
5658 10777 7.686438 ATGTGCTAGTTTGTTGATCACATTA 57.314 32.000 0.00 0.00 39.70 1.90
5736 10867 2.413310 ATCATGACAGATGCTGCACA 57.587 45.000 3.57 0.00 34.37 4.57
5984 11238 8.196103 GGACATAGTAAGTAGACCACTAAAAGG 58.804 40.741 0.00 0.00 36.04 3.11
6150 11415 4.394729 TGGAGATTGTTAGTGGGTTGAAC 58.605 43.478 0.00 0.00 0.00 3.18
6358 11631 1.458064 CTTCAATTTTGCCAAGCTGCG 59.542 47.619 0.00 0.00 0.00 5.18
6439 11712 4.240888 CGATGATAGGCCACTAATGTCAG 58.759 47.826 5.01 0.00 31.86 3.51
6555 11829 4.264253 CAAGGGACAGCATGAACTATTCA 58.736 43.478 0.00 0.00 45.01 2.57
6576 11850 8.862325 ATTCAGTAAATGTAATGAGTTCCACA 57.138 30.769 0.00 0.00 35.84 4.17
6579 11853 7.015289 CAGTAAATGTAATGAGTTCCACAACG 58.985 38.462 0.00 0.00 37.61 4.10
6649 11924 7.348080 AGTATAGCTAGTTGTATGCTTCACA 57.652 36.000 0.00 0.00 38.15 3.58
6756 12031 3.521560 GCGTGGTAAGATGTTGATCTCA 58.478 45.455 0.00 0.00 38.03 3.27
6764 12039 8.539544 TGGTAAGATGTTGATCTCATTCTGTTA 58.460 33.333 0.00 0.00 38.03 2.41
6783 12058 6.782494 TCTGTTACTCAGGCATGGAGATTATA 59.218 38.462 0.00 0.00 43.76 0.98
6788 12063 5.248020 ACTCAGGCATGGAGATTATAGGAAG 59.752 44.000 0.00 0.00 36.26 3.46
6819 12094 4.540824 GCAATTGAACTTGTGGACTCTTC 58.459 43.478 10.34 0.00 0.00 2.87
6844 12119 7.439655 TCATTTGTTACAAGTTGCCCATTTAAC 59.560 33.333 1.81 4.05 0.00 2.01
6867 12142 4.328983 CGAAGTTTTGCGGTGTACTCATAT 59.671 41.667 0.00 0.00 0.00 1.78
6884 12159 6.248433 ACTCATATGGGAATCTTGTGTGTTT 58.752 36.000 10.29 0.00 0.00 2.83
6890 12165 4.141367 TGGGAATCTTGTGTGTTTAGGACA 60.141 41.667 0.00 0.00 35.42 4.02
6918 12193 8.690884 TGCTAATGATAGGCTACTAATCTCATC 58.309 37.037 0.00 0.00 29.50 2.92
6940 12215 9.309516 TCATCGGTTATGTTTATGTTAGAGAAC 57.690 33.333 0.00 0.00 36.89 3.01
6951 12226 2.059541 GTTAGAGAACGAAAGCGCACT 58.940 47.619 11.47 0.00 42.48 4.40
6952 12227 1.698165 TAGAGAACGAAAGCGCACTG 58.302 50.000 11.47 0.00 42.48 3.66
7009 12284 1.219393 GAAGGAAGGGAGAGCACCG 59.781 63.158 0.00 0.00 0.00 4.94
7060 12335 1.331756 CACTCAATGGCCGTTAGATGC 59.668 52.381 10.61 0.00 0.00 3.91
7062 12337 2.292267 CTCAATGGCCGTTAGATGCTT 58.708 47.619 10.61 0.00 0.00 3.91
7074 12349 7.869429 GGCCGTTAGATGCTTTATAACTTAGTA 59.131 37.037 0.00 0.00 0.00 1.82
7135 12410 8.380742 TGATTTAGATTTACTCTCCCTGAACT 57.619 34.615 0.00 0.00 35.28 3.01
7138 12413 5.669164 AGATTTACTCTCCCTGAACTGAC 57.331 43.478 0.00 0.00 0.00 3.51
7139 12414 5.087323 AGATTTACTCTCCCTGAACTGACA 58.913 41.667 0.00 0.00 0.00 3.58
7140 12415 5.723887 AGATTTACTCTCCCTGAACTGACAT 59.276 40.000 0.00 0.00 0.00 3.06
7141 12416 5.825593 TTTACTCTCCCTGAACTGACATT 57.174 39.130 0.00 0.00 0.00 2.71
7142 12417 5.825593 TTACTCTCCCTGAACTGACATTT 57.174 39.130 0.00 0.00 0.00 2.32
7143 12418 4.013267 ACTCTCCCTGAACTGACATTTG 57.987 45.455 0.00 0.00 0.00 2.32
7144 12419 3.244700 ACTCTCCCTGAACTGACATTTGG 60.245 47.826 0.00 0.00 0.00 3.28
7145 12420 1.815003 CTCCCTGAACTGACATTTGGC 59.185 52.381 0.00 0.00 0.00 4.52
7146 12421 1.144708 TCCCTGAACTGACATTTGGCA 59.855 47.619 0.00 0.00 0.00 4.92
7147 12422 2.173519 CCCTGAACTGACATTTGGCAT 58.826 47.619 0.00 0.00 29.25 4.40
7148 12423 3.010027 TCCCTGAACTGACATTTGGCATA 59.990 43.478 0.00 0.00 29.25 3.14
7149 12424 3.956199 CCCTGAACTGACATTTGGCATAT 59.044 43.478 0.00 0.00 29.25 1.78
7150 12425 4.202080 CCCTGAACTGACATTTGGCATATG 60.202 45.833 15.16 15.16 29.25 1.78
7151 12426 4.400251 CCTGAACTGACATTTGGCATATGT 59.600 41.667 21.11 21.11 38.86 2.29
7152 12427 5.313520 TGAACTGACATTTGGCATATGTG 57.686 39.130 25.00 15.23 36.41 3.21
7153 12428 4.766373 TGAACTGACATTTGGCATATGTGT 59.234 37.500 25.00 15.79 36.41 3.72
7154 12429 5.942826 TGAACTGACATTTGGCATATGTGTA 59.057 36.000 25.00 14.01 36.41 2.90
7155 12430 6.602803 TGAACTGACATTTGGCATATGTGTAT 59.397 34.615 25.00 10.53 36.41 2.29
7156 12431 7.122501 TGAACTGACATTTGGCATATGTGTATT 59.877 33.333 25.00 15.88 36.41 1.89
7157 12432 7.408756 ACTGACATTTGGCATATGTGTATTT 57.591 32.000 25.00 2.59 36.41 1.40
7158 12433 8.518430 ACTGACATTTGGCATATGTGTATTTA 57.482 30.769 25.00 6.47 36.41 1.40
7159 12434 9.135189 ACTGACATTTGGCATATGTGTATTTAT 57.865 29.630 25.00 1.21 36.41 1.40
7185 12460 7.984422 ATATCCATGAGTTTATTGAATGCGA 57.016 32.000 0.00 0.00 0.00 5.10
7186 12461 6.698008 ATCCATGAGTTTATTGAATGCGAA 57.302 33.333 0.00 0.00 0.00 4.70
7187 12462 6.507958 TCCATGAGTTTATTGAATGCGAAA 57.492 33.333 0.00 0.00 0.00 3.46
7188 12463 6.918626 TCCATGAGTTTATTGAATGCGAAAA 58.081 32.000 0.00 0.00 0.00 2.29
7189 12464 7.028962 TCCATGAGTTTATTGAATGCGAAAAG 58.971 34.615 0.00 0.00 0.00 2.27
7190 12465 6.808212 CCATGAGTTTATTGAATGCGAAAAGT 59.192 34.615 0.00 0.00 0.00 2.66
7191 12466 7.967854 CCATGAGTTTATTGAATGCGAAAAGTA 59.032 33.333 0.00 0.00 0.00 2.24
7192 12467 9.340695 CATGAGTTTATTGAATGCGAAAAGTAA 57.659 29.630 0.00 0.00 0.00 2.24
7194 12469 9.340695 TGAGTTTATTGAATGCGAAAAGTAATG 57.659 29.630 0.00 0.00 0.00 1.90
7195 12470 9.554724 GAGTTTATTGAATGCGAAAAGTAATGA 57.445 29.630 0.00 0.00 0.00 2.57
7196 12471 9.906660 AGTTTATTGAATGCGAAAAGTAATGAA 57.093 25.926 0.00 0.00 0.00 2.57
7201 12476 9.853555 ATTGAATGCGAAAAGTAATGAATAACA 57.146 25.926 0.00 0.00 0.00 2.41
7202 12477 9.853555 TTGAATGCGAAAAGTAATGAATAACAT 57.146 25.926 0.00 0.00 41.45 2.71
7205 12480 9.950680 AATGCGAAAAGTAATGAATAACATAGG 57.049 29.630 0.00 0.00 38.38 2.57
7206 12481 7.414436 TGCGAAAAGTAATGAATAACATAGGC 58.586 34.615 0.00 0.00 38.38 3.93
7207 12482 6.573725 GCGAAAAGTAATGAATAACATAGGCG 59.426 38.462 0.00 0.00 38.38 5.52
7208 12483 7.069569 CGAAAAGTAATGAATAACATAGGCGG 58.930 38.462 0.00 0.00 38.38 6.13
7209 12484 7.042321 CGAAAAGTAATGAATAACATAGGCGGA 60.042 37.037 0.00 0.00 38.38 5.54
7210 12485 8.691661 AAAAGTAATGAATAACATAGGCGGAT 57.308 30.769 0.00 0.00 38.38 4.18
7211 12486 7.907214 AAGTAATGAATAACATAGGCGGATC 57.093 36.000 0.00 0.00 38.38 3.36
7212 12487 6.407202 AGTAATGAATAACATAGGCGGATCC 58.593 40.000 0.00 0.00 38.38 3.36
7213 12488 4.908601 ATGAATAACATAGGCGGATCCA 57.091 40.909 13.41 0.00 37.46 3.41
7214 12489 4.908601 TGAATAACATAGGCGGATCCAT 57.091 40.909 13.41 0.00 37.29 3.41
7215 12490 5.241403 TGAATAACATAGGCGGATCCATT 57.759 39.130 13.41 0.00 37.29 3.16
7216 12491 5.245531 TGAATAACATAGGCGGATCCATTC 58.754 41.667 13.41 10.19 37.29 2.67
7217 12492 5.013079 TGAATAACATAGGCGGATCCATTCT 59.987 40.000 13.41 8.06 37.29 2.40
7218 12493 3.409026 AACATAGGCGGATCCATTCTC 57.591 47.619 13.41 0.00 37.29 2.87
7219 12494 2.329267 ACATAGGCGGATCCATTCTCA 58.671 47.619 13.41 0.00 37.29 3.27
7220 12495 2.037772 ACATAGGCGGATCCATTCTCAC 59.962 50.000 13.41 0.00 37.29 3.51
7221 12496 1.048601 TAGGCGGATCCATTCTCACC 58.951 55.000 13.41 0.96 37.29 4.02
7222 12497 1.227973 GGCGGATCCATTCTCACCC 60.228 63.158 13.41 0.00 34.01 4.61
7223 12498 1.700042 GGCGGATCCATTCTCACCCT 61.700 60.000 13.41 0.00 34.01 4.34
7224 12499 1.048601 GCGGATCCATTCTCACCCTA 58.951 55.000 13.41 0.00 0.00 3.53
7225 12500 1.270358 GCGGATCCATTCTCACCCTAC 60.270 57.143 13.41 0.00 0.00 3.18
7226 12501 1.344763 CGGATCCATTCTCACCCTACC 59.655 57.143 13.41 0.00 0.00 3.18
7227 12502 1.700186 GGATCCATTCTCACCCTACCC 59.300 57.143 6.95 0.00 0.00 3.69
7228 12503 1.700186 GATCCATTCTCACCCTACCCC 59.300 57.143 0.00 0.00 0.00 4.95
7229 12504 0.722676 TCCATTCTCACCCTACCCCT 59.277 55.000 0.00 0.00 0.00 4.79
7230 12505 0.839946 CCATTCTCACCCTACCCCTG 59.160 60.000 0.00 0.00 0.00 4.45
7231 12506 1.584724 CATTCTCACCCTACCCCTGT 58.415 55.000 0.00 0.00 0.00 4.00
7232 12507 1.486726 CATTCTCACCCTACCCCTGTC 59.513 57.143 0.00 0.00 0.00 3.51
7233 12508 0.790993 TTCTCACCCTACCCCTGTCT 59.209 55.000 0.00 0.00 0.00 3.41
7234 12509 1.690010 TCTCACCCTACCCCTGTCTA 58.310 55.000 0.00 0.00 0.00 2.59
7235 12510 2.005350 TCTCACCCTACCCCTGTCTAA 58.995 52.381 0.00 0.00 0.00 2.10
7236 12511 2.024273 TCTCACCCTACCCCTGTCTAAG 60.024 54.545 0.00 0.00 0.00 2.18
7237 12512 0.831307 CACCCTACCCCTGTCTAAGC 59.169 60.000 0.00 0.00 0.00 3.09
7238 12513 0.717196 ACCCTACCCCTGTCTAAGCT 59.283 55.000 0.00 0.00 0.00 3.74
7239 12514 1.935196 ACCCTACCCCTGTCTAAGCTA 59.065 52.381 0.00 0.00 0.00 3.32
7240 12515 2.317973 CCCTACCCCTGTCTAAGCTAC 58.682 57.143 0.00 0.00 0.00 3.58
7241 12516 2.091222 CCCTACCCCTGTCTAAGCTACT 60.091 54.545 0.00 0.00 0.00 2.57
7242 12517 3.139770 CCCTACCCCTGTCTAAGCTACTA 59.860 52.174 0.00 0.00 0.00 1.82
7243 12518 4.387211 CCCTACCCCTGTCTAAGCTACTAA 60.387 50.000 0.00 0.00 0.00 2.24
7244 12519 5.206587 CCTACCCCTGTCTAAGCTACTAAA 58.793 45.833 0.00 0.00 0.00 1.85
7245 12520 5.068855 CCTACCCCTGTCTAAGCTACTAAAC 59.931 48.000 0.00 0.00 0.00 2.01
7246 12521 4.422984 ACCCCTGTCTAAGCTACTAAACA 58.577 43.478 0.00 0.00 0.00 2.83
7247 12522 5.030820 ACCCCTGTCTAAGCTACTAAACAT 58.969 41.667 0.00 0.00 0.00 2.71
7248 12523 6.200114 ACCCCTGTCTAAGCTACTAAACATA 58.800 40.000 0.00 0.00 0.00 2.29
7249 12524 6.844917 ACCCCTGTCTAAGCTACTAAACATAT 59.155 38.462 0.00 0.00 0.00 1.78
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.508663 GCCTCGTCGTACCAAGGC 60.509 66.667 6.19 6.19 46.76 4.35
2 3 1.133598 TGTATGCCTCGTCGTACCAAG 59.866 52.381 0.00 0.00 0.00 3.61
5 6 0.594284 GCTGTATGCCTCGTCGTACC 60.594 60.000 0.00 0.00 35.15 3.34
6 7 0.099968 TGCTGTATGCCTCGTCGTAC 59.900 55.000 0.00 0.00 42.00 3.67
8 9 1.139734 CTGCTGTATGCCTCGTCGT 59.860 57.895 0.00 0.00 42.00 4.34
10 11 2.233654 CGCTGCTGTATGCCTCGTC 61.234 63.158 0.00 0.00 42.00 4.20
11 12 2.202797 CGCTGCTGTATGCCTCGT 60.203 61.111 0.00 0.00 42.00 4.18
12 13 2.202797 ACGCTGCTGTATGCCTCG 60.203 61.111 0.00 0.00 42.00 4.63
25 26 0.665369 GCAGAAAAATGCAGCACGCT 60.665 50.000 0.00 0.00 45.77 5.07
75 76 4.651994 CACTTTGCATCGGATTTCTGTAC 58.348 43.478 0.00 0.00 0.00 2.90
80 81 8.552506 AAGTATGGCACTTTGCATCGGATTTC 62.553 42.308 0.00 0.00 45.54 2.17
86 87 4.818534 ATAAGTATGGCACTTTGCATCG 57.181 40.909 0.00 0.00 45.54 3.84
98 99 7.889589 TCAATGAACGATGCTATAAGTATGG 57.110 36.000 0.00 0.00 0.00 2.74
113 114 8.023050 AGACTAAACTTGATCTTCAATGAACG 57.977 34.615 0.00 0.00 35.59 3.95
121 122 7.698970 CGGTCTTCTAGACTAAACTTGATCTTC 59.301 40.741 6.77 0.00 44.46 2.87
135 136 0.099082 CCACTCGCGGTCTTCTAGAC 59.901 60.000 6.13 0.00 44.32 2.59
146 147 2.333926 TCTGAATTAACACCACTCGCG 58.666 47.619 0.00 0.00 0.00 5.87
148 149 6.015504 CGAATTTCTGAATTAACACCACTCG 58.984 40.000 0.00 0.00 35.65 4.18
174 175 7.596995 GCTGTTCTATATACCACTGATCAACTC 59.403 40.741 0.00 0.00 0.00 3.01
202 203 3.074836 GGGTCATCTACTAGCTCCTAGGT 59.925 52.174 9.08 0.00 38.30 3.08
227 228 7.369800 CGATCTCGTTTTCGGTAAACAATAATG 59.630 37.037 10.24 0.00 45.20 1.90
310 312 0.537188 CATGTGGCTCCCGTAGAAGT 59.463 55.000 0.00 0.00 0.00 3.01
311 313 0.537188 ACATGTGGCTCCCGTAGAAG 59.463 55.000 0.00 0.00 0.00 2.85
312 314 0.981183 AACATGTGGCTCCCGTAGAA 59.019 50.000 0.00 0.00 0.00 2.10
367 369 9.760077 ACGTATAGTAAATTGAGGAACTAATGG 57.240 33.333 0.00 0.00 41.55 3.16
387 389 4.437794 GGTGCGCTATGCTACATACGTATA 60.438 45.833 9.73 0.00 46.63 1.47
388 390 3.499048 GTGCGCTATGCTACATACGTAT 58.501 45.455 9.73 1.14 46.63 3.06
418 420 5.127693 TGGGGTTTTACGACATTTTGATG 57.872 39.130 0.00 0.00 0.00 3.07
419 421 5.279256 CCTTGGGGTTTTACGACATTTTGAT 60.279 40.000 0.00 0.00 0.00 2.57
420 422 4.038162 CCTTGGGGTTTTACGACATTTTGA 59.962 41.667 0.00 0.00 0.00 2.69
421 423 4.303282 CCTTGGGGTTTTACGACATTTTG 58.697 43.478 0.00 0.00 0.00 2.44
422 424 3.322541 CCCTTGGGGTTTTACGACATTTT 59.677 43.478 0.00 0.00 38.25 1.82
423 425 2.894765 CCCTTGGGGTTTTACGACATTT 59.105 45.455 0.00 0.00 38.25 2.32
424 426 2.521126 CCCTTGGGGTTTTACGACATT 58.479 47.619 0.00 0.00 38.25 2.71
425 427 1.272258 CCCCTTGGGGTTTTACGACAT 60.272 52.381 16.51 0.00 42.41 3.06
426 428 0.110869 CCCCTTGGGGTTTTACGACA 59.889 55.000 16.51 0.00 42.41 4.35
427 429 0.401356 TCCCCTTGGGGTTTTACGAC 59.599 55.000 23.01 0.00 44.51 4.34
428 430 1.147333 TTCCCCTTGGGGTTTTACGA 58.853 50.000 23.01 0.23 44.51 3.43
429 431 2.097036 GATTCCCCTTGGGGTTTTACG 58.903 52.381 23.01 0.00 44.51 3.18
430 432 3.096852 CAGATTCCCCTTGGGGTTTTAC 58.903 50.000 23.01 11.78 44.51 2.01
431 433 2.043801 CCAGATTCCCCTTGGGGTTTTA 59.956 50.000 23.01 8.89 44.51 1.52
432 434 1.203300 CCAGATTCCCCTTGGGGTTTT 60.203 52.381 23.01 10.05 44.51 2.43
433 435 0.413434 CCAGATTCCCCTTGGGGTTT 59.587 55.000 23.01 12.42 44.51 3.27
434 436 2.096168 CCAGATTCCCCTTGGGGTT 58.904 57.895 23.01 12.76 44.51 4.11
435 437 2.626467 GCCAGATTCCCCTTGGGGT 61.626 63.158 23.01 6.08 44.51 4.95
436 438 2.280079 GCCAGATTCCCCTTGGGG 59.720 66.667 18.54 18.54 44.51 4.96
512 514 3.490526 GTGTGTTGTTTGACATTGGCATC 59.509 43.478 0.00 0.00 0.00 3.91
513 515 3.456280 GTGTGTTGTTTGACATTGGCAT 58.544 40.909 0.00 0.00 0.00 4.40
540 542 0.039798 GAACAGCGACGTCTGTGGTA 60.040 55.000 20.35 0.00 45.77 3.25
542 544 2.022129 GGAACAGCGACGTCTGTGG 61.022 63.158 20.35 3.01 45.77 4.17
562 564 1.160137 GTCATGAGCTTGACCCACAC 58.840 55.000 7.23 0.00 40.11 3.82
594 596 1.348008 TGGTCTCCCATCATGGCCTC 61.348 60.000 3.32 0.00 35.79 4.70
600 602 4.022603 CGATCTATCTGGTCTCCCATCAT 58.977 47.826 0.00 0.00 40.90 2.45
606 608 1.807742 CCGACGATCTATCTGGTCTCC 59.192 57.143 0.00 0.00 0.00 3.71
667 669 1.066071 GTGGAGGAAGGTAAGCTGGTC 60.066 57.143 0.00 0.00 0.00 4.02
716 724 4.914983 AGAAACCTCACATCATGTCATGT 58.085 39.130 12.54 0.00 37.49 3.21
718 726 4.521146 GGAGAAACCTCACATCATGTCAT 58.479 43.478 0.00 0.00 35.41 3.06
719 727 3.942829 GGAGAAACCTCACATCATGTCA 58.057 45.455 0.00 0.00 35.41 3.58
879 891 4.513442 TGGATAAAAGACATCAAGGTCGG 58.487 43.478 0.00 0.00 42.62 4.79
909 921 4.141287 CAAACTGTGGAGTTAATGGGACA 58.859 43.478 0.00 0.00 41.87 4.02
952 964 1.890876 CCGAGGGTGAAAATGTGTCA 58.109 50.000 0.00 0.00 0.00 3.58
1059 1075 3.742385 TGCTTGTGTGAGTTGATCATCA 58.258 40.909 6.55 0.76 40.92 3.07
1118 1134 1.432270 GCCAAGAGCGAAATCTCCGG 61.432 60.000 0.00 0.00 33.66 5.14
1280 1296 8.790718 AGTCAGATAATACCAATGATGAATTGC 58.209 33.333 0.00 0.00 43.80 3.56
1345 1361 0.179097 GCTCTGGAAACTCTAGCGGG 60.179 60.000 0.00 0.00 0.00 6.13
1416 1435 1.227645 GCTCTGCCATATGTCCGCA 60.228 57.895 1.24 3.56 0.00 5.69
1549 1568 3.195182 GGGTCGCTACTTAAGGAGAAGTT 59.805 47.826 19.46 0.00 40.22 2.66
1594 1613 2.112998 CTTGGTCCCATGCCAAATGAT 58.887 47.619 5.02 0.00 44.37 2.45
2013 2158 9.413048 CCTAAGTGGTTAAAATTATTCGCAAAA 57.587 29.630 0.00 0.00 0.00 2.44
2014 2159 8.973835 CCTAAGTGGTTAAAATTATTCGCAAA 57.026 30.769 0.00 0.00 0.00 3.68
2031 2176 6.349363 GCCAGTTGAAGATTTAACCTAAGTGG 60.349 42.308 0.00 0.00 39.16 4.00
2032 2177 6.431234 AGCCAGTTGAAGATTTAACCTAAGTG 59.569 38.462 0.00 0.00 0.00 3.16
2033 2178 6.543735 AGCCAGTTGAAGATTTAACCTAAGT 58.456 36.000 0.00 0.00 0.00 2.24
2034 2179 7.308435 CAAGCCAGTTGAAGATTTAACCTAAG 58.692 38.462 0.00 0.00 38.60 2.18
2035 2180 6.294508 GCAAGCCAGTTGAAGATTTAACCTAA 60.295 38.462 0.00 0.00 38.60 2.69
2036 2181 5.183140 GCAAGCCAGTTGAAGATTTAACCTA 59.817 40.000 0.00 0.00 38.60 3.08
2037 2182 4.021981 GCAAGCCAGTTGAAGATTTAACCT 60.022 41.667 0.00 0.00 38.60 3.50
2038 2183 4.021981 AGCAAGCCAGTTGAAGATTTAACC 60.022 41.667 0.00 0.00 38.60 2.85
2039 2184 4.919754 CAGCAAGCCAGTTGAAGATTTAAC 59.080 41.667 0.00 0.00 38.60 2.01
2040 2185 4.826733 TCAGCAAGCCAGTTGAAGATTTAA 59.173 37.500 0.00 0.00 38.60 1.52
2041 2186 4.397420 TCAGCAAGCCAGTTGAAGATTTA 58.603 39.130 0.00 0.00 38.60 1.40
2042 2187 3.225104 TCAGCAAGCCAGTTGAAGATTT 58.775 40.909 0.00 0.00 38.60 2.17
2043 2188 2.867624 TCAGCAAGCCAGTTGAAGATT 58.132 42.857 0.00 0.00 38.60 2.40
2044 2189 2.574006 TCAGCAAGCCAGTTGAAGAT 57.426 45.000 0.00 0.00 38.60 2.40
2045 2190 2.346766 TTCAGCAAGCCAGTTGAAGA 57.653 45.000 1.92 0.00 38.60 2.87
2046 2191 2.701073 CTTCAGCAAGCCAGTTGAAG 57.299 50.000 14.88 14.88 45.73 3.02
2047 2192 2.158769 TCTCTTCAGCAAGCCAGTTGAA 60.159 45.455 5.42 5.42 38.60 2.69
2048 2193 1.417517 TCTCTTCAGCAAGCCAGTTGA 59.582 47.619 0.00 0.00 38.60 3.18
2049 2194 1.805345 CTCTCTTCAGCAAGCCAGTTG 59.195 52.381 0.00 0.00 39.41 3.16
2050 2195 1.696336 TCTCTCTTCAGCAAGCCAGTT 59.304 47.619 0.00 0.00 0.00 3.16
2051 2196 1.346062 TCTCTCTTCAGCAAGCCAGT 58.654 50.000 0.00 0.00 0.00 4.00
2052 2197 2.469274 TTCTCTCTTCAGCAAGCCAG 57.531 50.000 0.00 0.00 0.00 4.85
2053 2198 2.570752 AGATTCTCTCTTCAGCAAGCCA 59.429 45.455 0.00 0.00 0.00 4.75
2054 2199 3.264998 AGATTCTCTCTTCAGCAAGCC 57.735 47.619 0.00 0.00 0.00 4.35
2055 2200 4.094739 GGAAAGATTCTCTCTTCAGCAAGC 59.905 45.833 0.00 0.00 43.60 4.01
2056 2201 4.635324 GGGAAAGATTCTCTCTTCAGCAAG 59.365 45.833 0.00 0.00 43.60 4.01
2057 2202 4.566488 GGGGAAAGATTCTCTCTTCAGCAA 60.566 45.833 0.00 0.00 43.60 3.91
2058 2203 3.054802 GGGGAAAGATTCTCTCTTCAGCA 60.055 47.826 0.00 0.00 43.60 4.41
2059 2204 3.199727 AGGGGAAAGATTCTCTCTTCAGC 59.800 47.826 0.00 0.00 43.60 4.26
2060 2205 4.141733 GGAGGGGAAAGATTCTCTCTTCAG 60.142 50.000 10.97 0.00 43.60 3.02
2061 2206 3.777522 GGAGGGGAAAGATTCTCTCTTCA 59.222 47.826 10.97 0.00 43.60 3.02
2062 2207 3.135712 GGGAGGGGAAAGATTCTCTCTTC 59.864 52.174 10.97 0.00 43.60 2.87
2063 2208 3.119319 GGGAGGGGAAAGATTCTCTCTT 58.881 50.000 10.97 0.00 46.44 2.85
2064 2209 2.320675 AGGGAGGGGAAAGATTCTCTCT 59.679 50.000 0.00 0.00 32.69 3.10
2065 2210 2.703536 GAGGGAGGGGAAAGATTCTCTC 59.296 54.545 0.00 0.00 32.96 3.20
2066 2211 2.630995 GGAGGGAGGGGAAAGATTCTCT 60.631 54.545 0.00 0.00 0.00 3.10
2067 2212 1.771854 GGAGGGAGGGGAAAGATTCTC 59.228 57.143 0.00 0.00 0.00 2.87
2068 2213 1.629464 GGGAGGGAGGGGAAAGATTCT 60.629 57.143 0.00 0.00 0.00 2.40
2069 2214 0.847373 GGGAGGGAGGGGAAAGATTC 59.153 60.000 0.00 0.00 0.00 2.52
2070 2215 0.988678 CGGGAGGGAGGGGAAAGATT 60.989 60.000 0.00 0.00 0.00 2.40
2071 2216 1.384643 CGGGAGGGAGGGGAAAGAT 60.385 63.158 0.00 0.00 0.00 2.40
2072 2217 2.040606 CGGGAGGGAGGGGAAAGA 59.959 66.667 0.00 0.00 0.00 2.52
3097 3242 3.672295 GAGCGCCAGACCAGGAAGG 62.672 68.421 2.29 0.00 45.67 3.46
3541 3687 2.595463 TCGACCGACGGAACCACT 60.595 61.111 23.38 0.00 42.82 4.00
4130 4276 7.040823 AGCACTTTCTTTCTCTTACATCCTTTG 60.041 37.037 0.00 0.00 0.00 2.77
4137 4283 7.642669 CATTTCAGCACTTTCTTTCTCTTACA 58.357 34.615 0.00 0.00 0.00 2.41
4138 4284 6.580416 GCATTTCAGCACTTTCTTTCTCTTAC 59.420 38.462 0.00 0.00 0.00 2.34
4139 4285 6.262944 TGCATTTCAGCACTTTCTTTCTCTTA 59.737 34.615 0.00 0.00 40.11 2.10
4140 4286 5.068198 TGCATTTCAGCACTTTCTTTCTCTT 59.932 36.000 0.00 0.00 40.11 2.85
4141 4287 4.581824 TGCATTTCAGCACTTTCTTTCTCT 59.418 37.500 0.00 0.00 40.11 3.10
4142 4288 4.863491 TGCATTTCAGCACTTTCTTTCTC 58.137 39.130 0.00 0.00 40.11 2.87
4143 4289 4.868067 CTGCATTTCAGCACTTTCTTTCT 58.132 39.130 0.00 0.00 40.11 2.52
4227 6046 8.725148 AGTACACTCATCAAAGCTTTTATTCTG 58.275 33.333 9.53 4.83 0.00 3.02
4228 6047 8.725148 CAGTACACTCATCAAAGCTTTTATTCT 58.275 33.333 9.53 0.00 0.00 2.40
4229 6048 7.483059 GCAGTACACTCATCAAAGCTTTTATTC 59.517 37.037 9.53 0.00 0.00 1.75
4230 6049 7.308435 GCAGTACACTCATCAAAGCTTTTATT 58.692 34.615 9.53 0.00 0.00 1.40
4231 6050 6.127897 GGCAGTACACTCATCAAAGCTTTTAT 60.128 38.462 9.53 4.24 0.00 1.40
4232 6051 5.181245 GGCAGTACACTCATCAAAGCTTTTA 59.819 40.000 9.53 1.36 0.00 1.52
4233 6052 4.022849 GGCAGTACACTCATCAAAGCTTTT 60.023 41.667 9.53 0.00 0.00 2.27
4234 6053 3.503748 GGCAGTACACTCATCAAAGCTTT 59.496 43.478 5.69 5.69 0.00 3.51
4235 6054 3.077359 GGCAGTACACTCATCAAAGCTT 58.923 45.455 0.00 0.00 0.00 3.74
4236 6055 2.704572 GGCAGTACACTCATCAAAGCT 58.295 47.619 0.00 0.00 0.00 3.74
4237 6056 1.394917 CGGCAGTACACTCATCAAAGC 59.605 52.381 0.00 0.00 0.00 3.51
4238 6057 2.926200 CTCGGCAGTACACTCATCAAAG 59.074 50.000 0.00 0.00 0.00 2.77
4239 6058 2.299013 ACTCGGCAGTACACTCATCAAA 59.701 45.455 0.00 0.00 0.00 2.69
4240 6059 1.893137 ACTCGGCAGTACACTCATCAA 59.107 47.619 0.00 0.00 0.00 2.57
4241 6060 1.202348 CACTCGGCAGTACACTCATCA 59.798 52.381 0.00 0.00 0.00 3.07
4242 6061 1.914634 CACTCGGCAGTACACTCATC 58.085 55.000 0.00 0.00 0.00 2.92
4243 6062 0.108615 GCACTCGGCAGTACACTCAT 60.109 55.000 0.00 0.00 43.97 2.90
4244 6063 1.289066 GCACTCGGCAGTACACTCA 59.711 57.895 0.00 0.00 43.97 3.41
4245 6064 4.170723 GCACTCGGCAGTACACTC 57.829 61.111 0.00 0.00 43.97 3.51
4334 6181 1.886542 CCTAACCAAACCAAGCACCTC 59.113 52.381 0.00 0.00 0.00 3.85
4363 6210 0.955919 GGTTCCTTTCCCAGCGTCAG 60.956 60.000 0.00 0.00 0.00 3.51
4708 8351 7.363268 GCTGGTTGAGACATCCATTATTTCTTT 60.363 37.037 0.00 0.00 33.46 2.52
4766 8427 7.494625 TGTACTAAAGTATCCTTGCATTAGTGC 59.505 37.037 12.95 12.16 41.13 4.40
4767 8428 8.942338 TGTACTAAAGTATCCTTGCATTAGTG 57.058 34.615 12.95 0.00 34.37 2.74
4827 8488 9.905713 AAAGGATGTCTTCATAGCTAACAAATA 57.094 29.630 0.00 0.00 33.94 1.40
5062 8728 2.667199 GTGTGTGGTGGGCGGTAC 60.667 66.667 0.00 0.00 0.00 3.34
5067 8733 0.881118 CTAATGTGTGTGTGGTGGGC 59.119 55.000 0.00 0.00 0.00 5.36
5104 8770 1.002069 ATCATCCAAGTCAGGGGCAA 58.998 50.000 0.00 0.00 0.00 4.52
5220 9142 7.041848 CGATTTAGACAATATGGCATCAAGACA 60.042 37.037 1.65 0.00 41.62 3.41
5409 9428 2.093500 TCAGTGTGCCCTACATAAGCAG 60.093 50.000 0.00 0.00 42.24 4.24
5453 9472 4.062490 AGAACCCTTACTGAGCCTCTTA 57.938 45.455 0.00 0.00 0.00 2.10
5488 10600 7.993183 TCAGAACTACTTCATTTTTGAACTCCT 59.007 33.333 0.00 0.00 0.00 3.69
5657 10776 9.995003 ATTTTGGTCAATGTAAGAATTTTGCTA 57.005 25.926 0.00 0.00 0.00 3.49
5658 10777 8.776470 CATTTTGGTCAATGTAAGAATTTTGCT 58.224 29.630 0.00 0.00 30.60 3.91
5736 10867 3.810941 CAGCCAATCAAGCACATGTTTTT 59.189 39.130 0.00 0.00 0.00 1.94
5984 11238 8.563123 AAGTCTCCTTAACCATAAAAAGTAGC 57.437 34.615 0.00 0.00 0.00 3.58
6015 11280 7.448748 AACAATCAACAGGTTAGTATGGAAC 57.551 36.000 0.00 0.00 0.00 3.62
6150 11415 0.036671 TGTGCTGAGGTGAGCTGATG 60.037 55.000 0.00 0.00 39.90 3.07
6555 11829 6.148811 CCGTTGTGGAACTCATTACATTTACT 59.851 38.462 0.00 0.00 42.00 2.24
6579 11853 3.538634 AACATCTAACGGCCTTCTACC 57.461 47.619 0.00 0.00 0.00 3.18
6731 12006 1.066430 TCAACATCTTACCACGCCTCC 60.066 52.381 0.00 0.00 0.00 4.30
6764 12039 4.756564 TCCTATAATCTCCATGCCTGAGT 58.243 43.478 0.00 0.00 0.00 3.41
6783 12058 3.420893 TCAATTGCGTTTCCATCTTCCT 58.579 40.909 0.00 0.00 0.00 3.36
6788 12063 4.148696 CACAAGTTCAATTGCGTTTCCATC 59.851 41.667 0.00 0.00 33.28 3.51
6819 12094 7.568497 CGTTAAATGGGCAACTTGTAACAAATG 60.568 37.037 0.00 0.00 0.00 2.32
6844 12119 1.862201 TGAGTACACCGCAAAACTTCG 59.138 47.619 0.00 0.00 0.00 3.79
6861 12136 6.764308 AAACACACAAGATTCCCATATGAG 57.236 37.500 3.65 0.00 0.00 2.90
6867 12142 4.141367 TGTCCTAAACACACAAGATTCCCA 60.141 41.667 0.00 0.00 31.20 4.37
6884 12159 4.483950 AGCCTATCATTAGCACTGTCCTA 58.516 43.478 0.00 0.00 0.00 2.94
6890 12165 7.671819 TGAGATTAGTAGCCTATCATTAGCACT 59.328 37.037 0.00 0.00 0.00 4.40
6918 12193 7.745022 TCGTTCTCTAACATAAACATAACCG 57.255 36.000 0.00 0.00 35.16 4.44
6951 12226 4.379174 GCTTTGGAGTCGGAAGCA 57.621 55.556 18.75 0.00 43.89 3.91
6952 12227 0.238553 GTTGCTTTGGAGTCGGAAGC 59.761 55.000 17.49 17.49 44.51 3.86
6958 12233 4.278419 ACAATTACTGGTTGCTTTGGAGTC 59.722 41.667 0.00 0.00 0.00 3.36
7009 12284 6.734104 ACTCATTGCATTTACAGAGTTCTC 57.266 37.500 0.00 0.00 32.88 2.87
7038 12313 2.093306 TCTAACGGCCATTGAGTGTG 57.907 50.000 2.24 0.00 0.00 3.82
7044 12319 4.836125 ATAAAGCATCTAACGGCCATTG 57.164 40.909 2.24 0.00 0.00 2.82
7045 12320 6.062095 AGTTATAAAGCATCTAACGGCCATT 58.938 36.000 2.24 0.00 32.04 3.16
7076 12351 7.887381 ACAACTAGCTATACTAAGATTCGCAT 58.113 34.615 0.00 0.00 0.00 4.73
7104 12379 8.997734 AGGGAGAGTAAATCTAAATCATGAAGT 58.002 33.333 0.00 0.00 38.84 3.01
7108 12383 9.050601 GTTCAGGGAGAGTAAATCTAAATCATG 57.949 37.037 0.00 0.00 38.84 3.07
7113 12388 7.234782 TGTCAGTTCAGGGAGAGTAAATCTAAA 59.765 37.037 0.00 0.00 38.84 1.85
7114 12389 6.724441 TGTCAGTTCAGGGAGAGTAAATCTAA 59.276 38.462 0.00 0.00 38.84 2.10
7115 12390 6.253758 TGTCAGTTCAGGGAGAGTAAATCTA 58.746 40.000 0.00 0.00 38.84 1.98
7116 12391 5.087323 TGTCAGTTCAGGGAGAGTAAATCT 58.913 41.667 0.00 0.00 42.61 2.40
7117 12392 5.407407 TGTCAGTTCAGGGAGAGTAAATC 57.593 43.478 0.00 0.00 0.00 2.17
7118 12393 6.380079 AATGTCAGTTCAGGGAGAGTAAAT 57.620 37.500 0.00 0.00 0.00 1.40
7128 12403 4.400251 ACATATGCCAAATGTCAGTTCAGG 59.600 41.667 1.58 0.00 32.02 3.86
7129 12404 5.106038 ACACATATGCCAAATGTCAGTTCAG 60.106 40.000 1.58 0.00 35.39 3.02
7159 12434 9.500785 TCGCATTCAATAAACTCATGGATATTA 57.499 29.630 0.00 0.00 0.00 0.98
7160 12435 8.394971 TCGCATTCAATAAACTCATGGATATT 57.605 30.769 0.00 0.00 0.00 1.28
7161 12436 7.984422 TCGCATTCAATAAACTCATGGATAT 57.016 32.000 0.00 0.00 0.00 1.63
7162 12437 7.800155 TTCGCATTCAATAAACTCATGGATA 57.200 32.000 0.00 0.00 0.00 2.59
7163 12438 6.698008 TTCGCATTCAATAAACTCATGGAT 57.302 33.333 0.00 0.00 0.00 3.41
7164 12439 6.507958 TTTCGCATTCAATAAACTCATGGA 57.492 33.333 0.00 0.00 0.00 3.41
7165 12440 6.808212 ACTTTTCGCATTCAATAAACTCATGG 59.192 34.615 0.00 0.00 0.00 3.66
7166 12441 7.801547 ACTTTTCGCATTCAATAAACTCATG 57.198 32.000 0.00 0.00 0.00 3.07
7168 12443 9.340695 CATTACTTTTCGCATTCAATAAACTCA 57.659 29.630 0.00 0.00 0.00 3.41
7169 12444 9.554724 TCATTACTTTTCGCATTCAATAAACTC 57.445 29.630 0.00 0.00 0.00 3.01
7170 12445 9.906660 TTCATTACTTTTCGCATTCAATAAACT 57.093 25.926 0.00 0.00 0.00 2.66
7175 12450 9.853555 TGTTATTCATTACTTTTCGCATTCAAT 57.146 25.926 0.00 0.00 0.00 2.57
7176 12451 9.853555 ATGTTATTCATTACTTTTCGCATTCAA 57.146 25.926 0.00 0.00 32.08 2.69
7179 12454 9.950680 CCTATGTTATTCATTACTTTTCGCATT 57.049 29.630 0.00 0.00 37.91 3.56
7180 12455 8.076178 GCCTATGTTATTCATTACTTTTCGCAT 58.924 33.333 0.00 0.00 37.91 4.73
7181 12456 7.414436 GCCTATGTTATTCATTACTTTTCGCA 58.586 34.615 0.00 0.00 37.91 5.10
7182 12457 6.573725 CGCCTATGTTATTCATTACTTTTCGC 59.426 38.462 0.00 0.00 37.91 4.70
7183 12458 7.042321 TCCGCCTATGTTATTCATTACTTTTCG 60.042 37.037 0.00 0.00 37.91 3.46
7184 12459 8.149973 TCCGCCTATGTTATTCATTACTTTTC 57.850 34.615 0.00 0.00 37.91 2.29
7185 12460 8.691661 ATCCGCCTATGTTATTCATTACTTTT 57.308 30.769 0.00 0.00 37.91 2.27
7186 12461 7.390718 GGATCCGCCTATGTTATTCATTACTTT 59.609 37.037 0.00 0.00 37.91 2.66
7187 12462 6.879458 GGATCCGCCTATGTTATTCATTACTT 59.121 38.462 0.00 0.00 37.91 2.24
7188 12463 6.013725 TGGATCCGCCTATGTTATTCATTACT 60.014 38.462 7.39 0.00 37.63 2.24
7189 12464 6.170506 TGGATCCGCCTATGTTATTCATTAC 58.829 40.000 7.39 0.00 37.63 1.89
7190 12465 6.367374 TGGATCCGCCTATGTTATTCATTA 57.633 37.500 7.39 0.00 37.63 1.90
7191 12466 5.241403 TGGATCCGCCTATGTTATTCATT 57.759 39.130 7.39 0.00 37.63 2.57
7192 12467 4.908601 TGGATCCGCCTATGTTATTCAT 57.091 40.909 7.39 0.00 37.63 2.57
7193 12468 4.908601 ATGGATCCGCCTATGTTATTCA 57.091 40.909 7.39 0.00 37.63 2.57
7194 12469 5.491982 AGAATGGATCCGCCTATGTTATTC 58.508 41.667 7.39 7.34 37.63 1.75
7195 12470 5.013079 TGAGAATGGATCCGCCTATGTTATT 59.987 40.000 7.39 0.00 37.63 1.40
7196 12471 4.532126 TGAGAATGGATCCGCCTATGTTAT 59.468 41.667 7.39 0.00 37.63 1.89
7197 12472 3.901222 TGAGAATGGATCCGCCTATGTTA 59.099 43.478 7.39 0.00 37.63 2.41
7198 12473 2.705658 TGAGAATGGATCCGCCTATGTT 59.294 45.455 7.39 0.00 37.63 2.71
7199 12474 2.037772 GTGAGAATGGATCCGCCTATGT 59.962 50.000 7.39 0.00 37.63 2.29
7200 12475 2.613977 GGTGAGAATGGATCCGCCTATG 60.614 54.545 7.39 0.00 37.63 2.23
7201 12476 1.625818 GGTGAGAATGGATCCGCCTAT 59.374 52.381 7.39 0.00 37.63 2.57
7202 12477 1.048601 GGTGAGAATGGATCCGCCTA 58.951 55.000 7.39 0.00 37.63 3.93
7203 12478 1.700042 GGGTGAGAATGGATCCGCCT 61.700 60.000 7.39 3.56 37.63 5.52
7204 12479 1.227973 GGGTGAGAATGGATCCGCC 60.228 63.158 7.39 0.00 37.10 6.13
7205 12480 1.048601 TAGGGTGAGAATGGATCCGC 58.951 55.000 7.39 0.00 0.00 5.54
7206 12481 1.344763 GGTAGGGTGAGAATGGATCCG 59.655 57.143 7.39 0.00 0.00 4.18
7207 12482 1.700186 GGGTAGGGTGAGAATGGATCC 59.300 57.143 4.20 4.20 0.00 3.36
7208 12483 1.700186 GGGGTAGGGTGAGAATGGATC 59.300 57.143 0.00 0.00 0.00 3.36
7209 12484 1.298382 AGGGGTAGGGTGAGAATGGAT 59.702 52.381 0.00 0.00 0.00 3.41
7210 12485 0.722676 AGGGGTAGGGTGAGAATGGA 59.277 55.000 0.00 0.00 0.00 3.41
7211 12486 0.839946 CAGGGGTAGGGTGAGAATGG 59.160 60.000 0.00 0.00 0.00 3.16
7212 12487 1.486726 GACAGGGGTAGGGTGAGAATG 59.513 57.143 0.00 0.00 0.00 2.67
7213 12488 1.366435 AGACAGGGGTAGGGTGAGAAT 59.634 52.381 0.00 0.00 0.00 2.40
7214 12489 0.790993 AGACAGGGGTAGGGTGAGAA 59.209 55.000 0.00 0.00 0.00 2.87
7215 12490 1.690010 TAGACAGGGGTAGGGTGAGA 58.310 55.000 0.00 0.00 0.00 3.27
7216 12491 2.389715 CTTAGACAGGGGTAGGGTGAG 58.610 57.143 0.00 0.00 0.00 3.51
7217 12492 1.621622 GCTTAGACAGGGGTAGGGTGA 60.622 57.143 0.00 0.00 0.00 4.02
7218 12493 0.831307 GCTTAGACAGGGGTAGGGTG 59.169 60.000 0.00 0.00 0.00 4.61
7219 12494 0.717196 AGCTTAGACAGGGGTAGGGT 59.283 55.000 0.00 0.00 0.00 4.34
7220 12495 2.091222 AGTAGCTTAGACAGGGGTAGGG 60.091 54.545 0.00 0.00 0.00 3.53
7221 12496 3.315880 AGTAGCTTAGACAGGGGTAGG 57.684 52.381 0.00 0.00 0.00 3.18
7222 12497 5.655532 TGTTTAGTAGCTTAGACAGGGGTAG 59.344 44.000 0.00 0.00 0.00 3.18
7223 12498 5.582953 TGTTTAGTAGCTTAGACAGGGGTA 58.417 41.667 0.00 0.00 0.00 3.69
7224 12499 4.422984 TGTTTAGTAGCTTAGACAGGGGT 58.577 43.478 0.00 0.00 0.00 4.95
7225 12500 5.615925 ATGTTTAGTAGCTTAGACAGGGG 57.384 43.478 0.00 0.00 0.00 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.