Multiple sequence alignment - TraesCS2B01G511800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G511800 chr2B 100.000 2468 0 0 1 2468 707471404 707473871 0.000000e+00 4558
1 TraesCS2B01G511800 chr7B 96.198 789 22 2 429 1217 682368843 682369623 0.000000e+00 1284
2 TraesCS2B01G511800 chr7B 85.634 710 89 9 429 1135 602549297 602549996 0.000000e+00 734
3 TraesCS2B01G511800 chr7B 81.818 638 77 19 1270 1872 602550382 602551015 1.320000e-137 499
4 TraesCS2B01G511800 chr7B 89.275 345 37 0 2074 2418 602551316 602551660 1.360000e-117 433
5 TraesCS2B01G511800 chr7B 89.189 148 13 3 429 575 602552115 602551970 5.420000e-42 182
6 TraesCS2B01G511800 chr7B 85.606 132 19 0 1928 2059 602551123 602551254 3.310000e-29 139
7 TraesCS2B01G511800 chr4B 86.995 792 90 9 429 1217 453776430 453777211 0.000000e+00 880
8 TraesCS2B01G511800 chr4B 79.046 482 78 9 1588 2059 648942483 648942015 2.380000e-80 309
9 TraesCS2B01G511800 chr4B 96.667 60 2 0 2069 2128 648941957 648941898 1.560000e-17 100
10 TraesCS2B01G511800 chr2A 86.255 713 84 10 426 1135 744290456 744291157 0.000000e+00 761
11 TraesCS2B01G511800 chr2A 81.068 824 115 18 1270 2059 744291543 744292359 9.700000e-174 619
12 TraesCS2B01G511800 chr2A 88.986 345 38 0 2074 2418 744292422 744292766 6.310000e-116 427
13 TraesCS2B01G511800 chr2A 84.127 252 37 3 968 1217 72632526 72632776 8.820000e-60 241
14 TraesCS2B01G511800 chr2A 89.404 151 13 3 426 575 744293224 744293076 1.170000e-43 187
15 TraesCS2B01G511800 chr4D 81.671 862 118 21 1211 2059 459225939 459226773 0.000000e+00 680
16 TraesCS2B01G511800 chr4D 91.743 218 18 0 2069 2286 459226831 459227048 1.110000e-78 303
17 TraesCS2B01G511800 chr4D 85.616 146 18 3 431 575 459227640 459227497 1.530000e-32 150
18 TraesCS2B01G511800 chr7A 92.435 423 27 4 1216 1635 25339882 25339462 1.260000e-167 599
19 TraesCS2B01G511800 chr7A 83.406 458 50 19 1984 2425 25339140 25338693 3.820000e-108 401
20 TraesCS2B01G511800 chr7A 89.189 148 13 3 429 575 25338119 25338264 5.420000e-42 182
21 TraesCS2B01G511800 chr5B 90.828 447 20 8 1 428 461709035 461709479 1.650000e-161 579
22 TraesCS2B01G511800 chr4A 81.612 484 72 7 1585 2059 695669114 695669589 3.850000e-103 385
23 TraesCS2B01G511800 chr7D 84.462 251 38 1 968 1217 204007351 204007101 1.900000e-61 246
24 TraesCS2B01G511800 chr2D 83.267 251 41 1 968 1217 26453129 26452879 1.910000e-56 230


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G511800 chr2B 707471404 707473871 2467 False 4558.000000 4558 100.000000 1 2468 1 chr2B.!!$F1 2467
1 TraesCS2B01G511800 chr7B 682368843 682369623 780 False 1284.000000 1284 96.198000 429 1217 1 chr7B.!!$F1 788
2 TraesCS2B01G511800 chr7B 602549297 602551660 2363 False 451.250000 734 85.583250 429 2418 4 chr7B.!!$F2 1989
3 TraesCS2B01G511800 chr4B 453776430 453777211 781 False 880.000000 880 86.995000 429 1217 1 chr4B.!!$F1 788
4 TraesCS2B01G511800 chr4B 648941898 648942483 585 True 204.500000 309 87.856500 1588 2128 2 chr4B.!!$R1 540
5 TraesCS2B01G511800 chr2A 744290456 744292766 2310 False 602.333333 761 85.436333 426 2418 3 chr2A.!!$F2 1992
6 TraesCS2B01G511800 chr4D 459225939 459227048 1109 False 491.500000 680 86.707000 1211 2286 2 chr4D.!!$F1 1075
7 TraesCS2B01G511800 chr7A 25338693 25339882 1189 True 500.000000 599 87.920500 1216 2425 2 chr7A.!!$R1 1209

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
321 322 0.038251 GCGTGGTCATGAGTCAGTGA 60.038 55.0 0.0 0.21 0.0 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2072 2621 0.036164 TGTGGCTGGTTTAGTCGCAT 59.964 50.0 0.0 0.0 45.92 4.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 3.883631 GGCAACAAAAATTGAAGCTGG 57.116 42.857 0.00 0.00 35.47 4.85
26 27 3.465871 GGCAACAAAAATTGAAGCTGGA 58.534 40.909 0.00 0.00 35.47 3.86
27 28 4.067192 GGCAACAAAAATTGAAGCTGGAT 58.933 39.130 0.00 0.00 35.47 3.41
28 29 4.152938 GGCAACAAAAATTGAAGCTGGATC 59.847 41.667 0.00 0.00 35.47 3.36
29 30 4.152938 GCAACAAAAATTGAAGCTGGATCC 59.847 41.667 4.20 4.20 33.53 3.36
30 31 5.299148 CAACAAAAATTGAAGCTGGATCCA 58.701 37.500 15.27 15.27 0.00 3.41
31 32 5.549742 ACAAAAATTGAAGCTGGATCCAA 57.450 34.783 17.00 0.00 0.00 3.53
32 33 5.299949 ACAAAAATTGAAGCTGGATCCAAC 58.700 37.500 17.00 11.98 0.00 3.77
33 34 5.163322 ACAAAAATTGAAGCTGGATCCAACA 60.163 36.000 17.00 10.72 0.00 3.33
34 35 5.549742 AAAATTGAAGCTGGATCCAACAA 57.450 34.783 17.00 18.05 0.00 2.83
35 36 5.549742 AAATTGAAGCTGGATCCAACAAA 57.450 34.783 17.00 8.02 0.00 2.83
36 37 5.549742 AATTGAAGCTGGATCCAACAAAA 57.450 34.783 17.00 7.67 0.00 2.44
37 38 5.549742 ATTGAAGCTGGATCCAACAAAAA 57.450 34.783 17.00 8.46 0.00 1.94
56 57 4.948341 AAAACACCCCCAGTTACAAATC 57.052 40.909 0.00 0.00 0.00 2.17
57 58 2.597578 ACACCCCCAGTTACAAATCC 57.402 50.000 0.00 0.00 0.00 3.01
58 59 1.271707 ACACCCCCAGTTACAAATCCG 60.272 52.381 0.00 0.00 0.00 4.18
59 60 1.003812 CACCCCCAGTTACAAATCCGA 59.996 52.381 0.00 0.00 0.00 4.55
60 61 1.280998 ACCCCCAGTTACAAATCCGAG 59.719 52.381 0.00 0.00 0.00 4.63
61 62 1.379527 CCCCAGTTACAAATCCGAGC 58.620 55.000 0.00 0.00 0.00 5.03
62 63 1.339631 CCCCAGTTACAAATCCGAGCA 60.340 52.381 0.00 0.00 0.00 4.26
63 64 2.432444 CCCAGTTACAAATCCGAGCAA 58.568 47.619 0.00 0.00 0.00 3.91
64 65 2.817258 CCCAGTTACAAATCCGAGCAAA 59.183 45.455 0.00 0.00 0.00 3.68
65 66 3.254657 CCCAGTTACAAATCCGAGCAAAA 59.745 43.478 0.00 0.00 0.00 2.44
66 67 4.261825 CCCAGTTACAAATCCGAGCAAAAA 60.262 41.667 0.00 0.00 0.00 1.94
89 90 8.558973 AAAAATCACTGATTCCAACAAAACAA 57.441 26.923 4.70 0.00 30.29 2.83
90 91 8.558973 AAAATCACTGATTCCAACAAAACAAA 57.441 26.923 4.70 0.00 30.29 2.83
91 92 7.775397 AATCACTGATTCCAACAAAACAAAG 57.225 32.000 0.00 0.00 0.00 2.77
92 93 6.522625 TCACTGATTCCAACAAAACAAAGA 57.477 33.333 0.00 0.00 0.00 2.52
93 94 6.329496 TCACTGATTCCAACAAAACAAAGAC 58.671 36.000 0.00 0.00 0.00 3.01
94 95 5.519927 CACTGATTCCAACAAAACAAAGACC 59.480 40.000 0.00 0.00 0.00 3.85
95 96 5.017294 TGATTCCAACAAAACAAAGACCC 57.983 39.130 0.00 0.00 0.00 4.46
96 97 4.467795 TGATTCCAACAAAACAAAGACCCA 59.532 37.500 0.00 0.00 0.00 4.51
97 98 4.464069 TTCCAACAAAACAAAGACCCAG 57.536 40.909 0.00 0.00 0.00 4.45
98 99 3.436243 TCCAACAAAACAAAGACCCAGT 58.564 40.909 0.00 0.00 0.00 4.00
99 100 3.835395 TCCAACAAAACAAAGACCCAGTT 59.165 39.130 0.00 0.00 0.00 3.16
100 101 3.932089 CCAACAAAACAAAGACCCAGTTG 59.068 43.478 0.00 0.00 35.97 3.16
101 102 4.562552 CCAACAAAACAAAGACCCAGTTGT 60.563 41.667 0.00 0.00 39.63 3.32
102 103 5.336849 CCAACAAAACAAAGACCCAGTTGTA 60.337 40.000 0.00 0.00 36.97 2.41
103 104 5.576447 ACAAAACAAAGACCCAGTTGTAG 57.424 39.130 0.00 0.00 36.97 2.74
104 105 4.142249 ACAAAACAAAGACCCAGTTGTAGC 60.142 41.667 0.00 0.00 36.97 3.58
105 106 3.290948 AACAAAGACCCAGTTGTAGCA 57.709 42.857 0.00 0.00 36.97 3.49
106 107 3.290948 ACAAAGACCCAGTTGTAGCAA 57.709 42.857 0.00 0.00 36.22 3.91
107 108 3.626930 ACAAAGACCCAGTTGTAGCAAA 58.373 40.909 0.00 0.00 36.22 3.68
108 109 4.020543 ACAAAGACCCAGTTGTAGCAAAA 58.979 39.130 0.00 0.00 36.22 2.44
109 110 4.464597 ACAAAGACCCAGTTGTAGCAAAAA 59.535 37.500 0.00 0.00 36.22 1.94
110 111 5.128663 ACAAAGACCCAGTTGTAGCAAAAAT 59.871 36.000 0.00 0.00 36.22 1.82
111 112 5.869649 AAGACCCAGTTGTAGCAAAAATT 57.130 34.783 0.00 0.00 0.00 1.82
112 113 5.200368 AGACCCAGTTGTAGCAAAAATTG 57.800 39.130 0.00 0.00 0.00 2.32
123 124 2.622546 CAAAAATTGCTGCCCATTGC 57.377 45.000 0.00 0.00 41.77 3.56
133 134 2.825836 CCCATTGCAGCTCCCGTC 60.826 66.667 0.00 0.00 0.00 4.79
134 135 3.197790 CCATTGCAGCTCCCGTCG 61.198 66.667 0.00 0.00 0.00 5.12
135 136 2.125552 CATTGCAGCTCCCGTCGA 60.126 61.111 0.00 0.00 0.00 4.20
136 137 2.169789 CATTGCAGCTCCCGTCGAG 61.170 63.158 0.00 0.00 42.04 4.04
137 138 3.376935 ATTGCAGCTCCCGTCGAGG 62.377 63.158 0.00 0.00 39.22 4.63
147 148 4.796231 CGTCGAGGCGGGTTCCAG 62.796 72.222 0.00 0.00 0.00 3.86
150 151 4.697756 CGAGGCGGGTTCCAGCAA 62.698 66.667 14.93 0.00 34.54 3.91
151 152 3.056328 GAGGCGGGTTCCAGCAAC 61.056 66.667 14.93 5.38 34.54 4.17
152 153 3.553095 GAGGCGGGTTCCAGCAACT 62.553 63.158 14.93 4.69 35.06 3.16
153 154 3.056328 GGCGGGTTCCAGCAACTC 61.056 66.667 14.93 0.00 35.06 3.01
154 155 3.056328 GCGGGTTCCAGCAACTCC 61.056 66.667 8.93 0.00 30.59 3.85
155 156 2.742372 CGGGTTCCAGCAACTCCG 60.742 66.667 0.00 0.00 40.31 4.63
156 157 2.359975 GGGTTCCAGCAACTCCGG 60.360 66.667 0.00 0.00 35.06 5.14
157 158 3.056328 GGTTCCAGCAACTCCGGC 61.056 66.667 0.00 0.00 35.06 6.13
158 159 3.423154 GTTCCAGCAACTCCGGCG 61.423 66.667 0.00 0.00 36.08 6.46
159 160 3.936203 TTCCAGCAACTCCGGCGT 61.936 61.111 6.01 0.00 36.08 5.68
160 161 4.680237 TCCAGCAACTCCGGCGTG 62.680 66.667 6.01 0.00 36.08 5.34
162 163 4.988598 CAGCAACTCCGGCGTGGT 62.989 66.667 6.01 0.00 39.52 4.16
163 164 4.988598 AGCAACTCCGGCGTGGTG 62.989 66.667 6.01 8.54 39.52 4.17
165 166 3.345808 CAACTCCGGCGTGGTGTG 61.346 66.667 6.01 0.00 43.56 3.82
190 191 4.211502 GGGTGCCGCCATGCATTC 62.212 66.667 0.00 0.00 44.30 2.67
191 192 4.211502 GGTGCCGCCATGCATTCC 62.212 66.667 0.00 0.00 44.30 3.01
192 193 4.211502 GTGCCGCCATGCATTCCC 62.212 66.667 0.00 0.00 44.30 3.97
193 194 4.445710 TGCCGCCATGCATTCCCT 62.446 61.111 0.00 0.00 36.04 4.20
194 195 3.149648 GCCGCCATGCATTCCCTT 61.150 61.111 0.00 0.00 0.00 3.95
195 196 2.809706 CCGCCATGCATTCCCTTG 59.190 61.111 0.00 0.00 0.00 3.61
196 197 2.788640 CCGCCATGCATTCCCTTGG 61.789 63.158 0.00 0.00 34.20 3.61
197 198 2.053865 CGCCATGCATTCCCTTGGT 61.054 57.895 0.00 0.00 33.75 3.67
198 199 0.751277 CGCCATGCATTCCCTTGGTA 60.751 55.000 0.00 0.00 33.75 3.25
199 200 0.746659 GCCATGCATTCCCTTGGTAC 59.253 55.000 0.00 0.00 33.75 3.34
200 201 1.959508 GCCATGCATTCCCTTGGTACA 60.960 52.381 0.00 0.00 33.75 2.90
213 214 2.543777 TGGTACAACTGGAGCAACTC 57.456 50.000 0.00 0.00 31.92 3.01
214 215 1.071699 TGGTACAACTGGAGCAACTCC 59.928 52.381 6.69 6.69 43.60 3.85
215 216 4.495392 TGGTACAACTGGAGCAACTCCG 62.495 54.545 9.01 6.55 45.42 4.63
222 223 4.681978 GAGCAACTCCGGCGTGGT 62.682 66.667 6.01 2.30 39.52 4.16
223 224 4.988598 AGCAACTCCGGCGTGGTG 62.989 66.667 6.01 8.54 39.52 4.17
235 236 4.961511 GTGGTGCGCGACTGGACA 62.962 66.667 12.10 0.00 30.91 4.02
236 237 4.228567 TGGTGCGCGACTGGACAA 62.229 61.111 12.10 0.00 30.91 3.18
237 238 3.712881 GGTGCGCGACTGGACAAC 61.713 66.667 12.10 0.00 30.91 3.32
238 239 2.661866 GTGCGCGACTGGACAACT 60.662 61.111 12.10 0.00 0.00 3.16
239 240 2.355837 TGCGCGACTGGACAACTC 60.356 61.111 12.10 0.00 0.00 3.01
240 241 3.470567 GCGCGACTGGACAACTCG 61.471 66.667 12.10 0.00 0.00 4.18
242 243 3.470567 GCGACTGGACAACTCGCG 61.471 66.667 0.00 0.00 42.94 5.87
243 244 2.805353 CGACTGGACAACTCGCGG 60.805 66.667 6.13 0.00 0.00 6.46
244 245 2.338984 GACTGGACAACTCGCGGT 59.661 61.111 6.13 0.00 0.00 5.68
245 246 2.022129 GACTGGACAACTCGCGGTG 61.022 63.158 6.13 4.92 0.00 4.94
246 247 2.738521 CTGGACAACTCGCGGTGG 60.739 66.667 6.13 3.09 0.00 4.61
247 248 3.515316 CTGGACAACTCGCGGTGGT 62.515 63.158 6.13 6.89 34.21 4.16
248 249 3.041940 GGACAACTCGCGGTGGTG 61.042 66.667 6.13 11.53 31.09 4.17
249 250 3.041940 GACAACTCGCGGTGGTGG 61.042 66.667 18.91 10.67 31.09 4.61
250 251 3.802418 GACAACTCGCGGTGGTGGT 62.802 63.158 18.91 13.33 31.09 4.16
251 252 3.345808 CAACTCGCGGTGGTGGTG 61.346 66.667 6.13 0.00 0.00 4.17
262 263 2.203195 GGTGGTGCACAGCAGACA 60.203 61.111 20.43 2.82 46.64 3.41
263 264 2.256591 GGTGGTGCACAGCAGACAG 61.257 63.158 20.43 0.00 46.64 3.51
264 265 2.592574 TGGTGCACAGCAGACAGC 60.593 61.111 20.43 0.00 40.08 4.40
284 285 4.137872 GCGGCGGTGGTGCTAGTA 62.138 66.667 9.78 0.00 34.52 1.82
285 286 2.812499 CGGCGGTGGTGCTAGTAT 59.188 61.111 0.00 0.00 34.52 2.12
286 287 2.035421 CGGCGGTGGTGCTAGTATA 58.965 57.895 0.00 0.00 34.52 1.47
287 288 0.039437 CGGCGGTGGTGCTAGTATAG 60.039 60.000 0.00 0.00 43.09 1.31
316 317 3.188786 GGCGCGTGGTCATGAGTC 61.189 66.667 8.43 0.00 0.00 3.36
317 318 2.432456 GCGCGTGGTCATGAGTCA 60.432 61.111 8.43 0.00 0.00 3.41
318 319 2.447887 GCGCGTGGTCATGAGTCAG 61.448 63.158 8.43 0.00 0.00 3.51
319 320 1.080501 CGCGTGGTCATGAGTCAGT 60.081 57.895 0.00 0.00 0.00 3.41
320 321 1.347097 CGCGTGGTCATGAGTCAGTG 61.347 60.000 0.00 0.00 0.00 3.66
321 322 0.038251 GCGTGGTCATGAGTCAGTGA 60.038 55.000 0.00 0.21 0.00 3.41
322 323 1.404717 GCGTGGTCATGAGTCAGTGAT 60.405 52.381 0.00 0.00 0.00 3.06
323 324 2.265683 CGTGGTCATGAGTCAGTGATG 58.734 52.381 0.00 0.00 0.00 3.07
324 325 2.005451 GTGGTCATGAGTCAGTGATGC 58.995 52.381 0.00 0.00 0.00 3.91
325 326 1.624813 TGGTCATGAGTCAGTGATGCA 59.375 47.619 0.00 0.00 0.00 3.96
326 327 2.237893 TGGTCATGAGTCAGTGATGCAT 59.762 45.455 0.00 0.00 0.00 3.96
327 328 3.276857 GGTCATGAGTCAGTGATGCATT 58.723 45.455 0.00 0.00 0.00 3.56
328 329 3.064958 GGTCATGAGTCAGTGATGCATTG 59.935 47.826 0.00 0.00 0.00 2.82
329 330 2.681344 TCATGAGTCAGTGATGCATTGC 59.319 45.455 0.00 0.46 0.00 3.56
330 331 2.188062 TGAGTCAGTGATGCATTGCA 57.812 45.000 14.72 14.72 44.86 4.08
331 332 2.081462 TGAGTCAGTGATGCATTGCAG 58.919 47.619 17.52 3.00 43.65 4.41
332 333 1.400846 GAGTCAGTGATGCATTGCAGG 59.599 52.381 17.52 4.38 43.65 4.85
333 334 1.003928 AGTCAGTGATGCATTGCAGGA 59.996 47.619 17.52 2.87 43.65 3.86
334 335 2.022195 GTCAGTGATGCATTGCAGGAT 58.978 47.619 17.52 0.00 43.65 3.24
335 336 2.426024 GTCAGTGATGCATTGCAGGATT 59.574 45.455 17.52 0.00 43.65 3.01
336 337 3.093814 TCAGTGATGCATTGCAGGATTT 58.906 40.909 17.52 0.00 43.65 2.17
337 338 3.119280 TCAGTGATGCATTGCAGGATTTG 60.119 43.478 17.52 11.06 43.65 2.32
338 339 2.829720 AGTGATGCATTGCAGGATTTGT 59.170 40.909 17.52 0.00 43.65 2.83
339 340 2.927477 GTGATGCATTGCAGGATTTGTG 59.073 45.455 17.52 0.00 43.65 3.33
340 341 2.093921 TGATGCATTGCAGGATTTGTGG 60.094 45.455 17.52 0.00 43.65 4.17
341 342 1.340088 TGCATTGCAGGATTTGTGGT 58.660 45.000 7.38 0.00 33.32 4.16
342 343 1.001068 TGCATTGCAGGATTTGTGGTG 59.999 47.619 7.38 0.00 33.32 4.17
343 344 1.001181 GCATTGCAGGATTTGTGGTGT 59.999 47.619 3.15 0.00 0.00 4.16
344 345 2.927871 GCATTGCAGGATTTGTGGTGTC 60.928 50.000 3.15 0.00 0.00 3.67
345 346 2.363306 TTGCAGGATTTGTGGTGTCT 57.637 45.000 0.00 0.00 0.00 3.41
346 347 1.608055 TGCAGGATTTGTGGTGTCTG 58.392 50.000 0.00 0.00 0.00 3.51
347 348 0.883833 GCAGGATTTGTGGTGTCTGG 59.116 55.000 0.00 0.00 0.00 3.86
348 349 1.819305 GCAGGATTTGTGGTGTCTGGT 60.819 52.381 0.00 0.00 0.00 4.00
349 350 1.881973 CAGGATTTGTGGTGTCTGGTG 59.118 52.381 0.00 0.00 0.00 4.17
350 351 1.494721 AGGATTTGTGGTGTCTGGTGT 59.505 47.619 0.00 0.00 0.00 4.16
351 352 1.608590 GGATTTGTGGTGTCTGGTGTG 59.391 52.381 0.00 0.00 0.00 3.82
352 353 2.297701 GATTTGTGGTGTCTGGTGTGT 58.702 47.619 0.00 0.00 0.00 3.72
353 354 2.208132 TTTGTGGTGTCTGGTGTGTT 57.792 45.000 0.00 0.00 0.00 3.32
354 355 1.458398 TTGTGGTGTCTGGTGTGTTG 58.542 50.000 0.00 0.00 0.00 3.33
355 356 0.393673 TGTGGTGTCTGGTGTGTTGG 60.394 55.000 0.00 0.00 0.00 3.77
356 357 0.107410 GTGGTGTCTGGTGTGTTGGA 60.107 55.000 0.00 0.00 0.00 3.53
357 358 0.180171 TGGTGTCTGGTGTGTTGGAG 59.820 55.000 0.00 0.00 0.00 3.86
358 359 0.468226 GGTGTCTGGTGTGTTGGAGA 59.532 55.000 0.00 0.00 0.00 3.71
359 360 1.134220 GGTGTCTGGTGTGTTGGAGAA 60.134 52.381 0.00 0.00 0.00 2.87
360 361 2.213499 GTGTCTGGTGTGTTGGAGAAG 58.787 52.381 0.00 0.00 0.00 2.85
361 362 2.115427 TGTCTGGTGTGTTGGAGAAGA 58.885 47.619 0.00 0.00 0.00 2.87
362 363 2.503765 TGTCTGGTGTGTTGGAGAAGAA 59.496 45.455 0.00 0.00 0.00 2.52
363 364 3.054728 TGTCTGGTGTGTTGGAGAAGAAA 60.055 43.478 0.00 0.00 0.00 2.52
364 365 3.561725 GTCTGGTGTGTTGGAGAAGAAAG 59.438 47.826 0.00 0.00 0.00 2.62
365 366 2.880890 CTGGTGTGTTGGAGAAGAAAGG 59.119 50.000 0.00 0.00 0.00 3.11
366 367 2.230660 GGTGTGTTGGAGAAGAAAGGG 58.769 52.381 0.00 0.00 0.00 3.95
367 368 2.230660 GTGTGTTGGAGAAGAAAGGGG 58.769 52.381 0.00 0.00 0.00 4.79
368 369 2.131854 TGTGTTGGAGAAGAAAGGGGA 58.868 47.619 0.00 0.00 0.00 4.81
369 370 2.106511 TGTGTTGGAGAAGAAAGGGGAG 59.893 50.000 0.00 0.00 0.00 4.30
370 371 2.372172 GTGTTGGAGAAGAAAGGGGAGA 59.628 50.000 0.00 0.00 0.00 3.71
371 372 3.053077 TGTTGGAGAAGAAAGGGGAGAA 58.947 45.455 0.00 0.00 0.00 2.87
372 373 3.461831 TGTTGGAGAAGAAAGGGGAGAAA 59.538 43.478 0.00 0.00 0.00 2.52
373 374 4.075682 GTTGGAGAAGAAAGGGGAGAAAG 58.924 47.826 0.00 0.00 0.00 2.62
374 375 3.598264 TGGAGAAGAAAGGGGAGAAAGA 58.402 45.455 0.00 0.00 0.00 2.52
375 376 3.584848 TGGAGAAGAAAGGGGAGAAAGAG 59.415 47.826 0.00 0.00 0.00 2.85
376 377 3.841255 GGAGAAGAAAGGGGAGAAAGAGA 59.159 47.826 0.00 0.00 0.00 3.10
377 378 4.081142 GGAGAAGAAAGGGGAGAAAGAGAG 60.081 50.000 0.00 0.00 0.00 3.20
378 379 4.757692 AGAAGAAAGGGGAGAAAGAGAGA 58.242 43.478 0.00 0.00 0.00 3.10
379 380 5.349690 AGAAGAAAGGGGAGAAAGAGAGAT 58.650 41.667 0.00 0.00 0.00 2.75
380 381 5.189539 AGAAGAAAGGGGAGAAAGAGAGATG 59.810 44.000 0.00 0.00 0.00 2.90
381 382 3.779738 AGAAAGGGGAGAAAGAGAGATGG 59.220 47.826 0.00 0.00 0.00 3.51
382 383 2.188818 AGGGGAGAAAGAGAGATGGG 57.811 55.000 0.00 0.00 0.00 4.00
383 384 1.653918 AGGGGAGAAAGAGAGATGGGA 59.346 52.381 0.00 0.00 0.00 4.37
384 385 2.252408 AGGGGAGAAAGAGAGATGGGAT 59.748 50.000 0.00 0.00 0.00 3.85
385 386 2.371510 GGGGAGAAAGAGAGATGGGATG 59.628 54.545 0.00 0.00 0.00 3.51
386 387 2.224499 GGGAGAAAGAGAGATGGGATGC 60.224 54.545 0.00 0.00 0.00 3.91
387 388 2.437281 GGAGAAAGAGAGATGGGATGCA 59.563 50.000 0.00 0.00 0.00 3.96
388 389 3.072768 GGAGAAAGAGAGATGGGATGCAT 59.927 47.826 0.00 0.00 0.00 3.96
389 390 4.317488 GAGAAAGAGAGATGGGATGCATC 58.683 47.826 18.81 18.81 0.00 3.91
390 391 2.835580 AAGAGAGATGGGATGCATCG 57.164 50.000 20.15 0.00 34.47 3.84
391 392 0.975135 AGAGAGATGGGATGCATCGG 59.025 55.000 20.15 0.00 34.47 4.18
392 393 0.683973 GAGAGATGGGATGCATCGGT 59.316 55.000 20.15 8.59 34.47 4.69
393 394 0.395686 AGAGATGGGATGCATCGGTG 59.604 55.000 20.15 0.00 34.47 4.94
394 395 0.107456 GAGATGGGATGCATCGGTGT 59.893 55.000 20.15 7.23 34.47 4.16
395 396 0.179037 AGATGGGATGCATCGGTGTG 60.179 55.000 20.15 0.00 34.47 3.82
396 397 0.179048 GATGGGATGCATCGGTGTGA 60.179 55.000 20.15 0.97 0.00 3.58
397 398 0.179037 ATGGGATGCATCGGTGTGAG 60.179 55.000 20.15 0.00 0.00 3.51
398 399 1.264045 TGGGATGCATCGGTGTGAGA 61.264 55.000 20.15 0.00 0.00 3.27
399 400 0.531532 GGGATGCATCGGTGTGAGAG 60.532 60.000 20.15 0.00 0.00 3.20
400 401 0.461548 GGATGCATCGGTGTGAGAGA 59.538 55.000 20.15 0.00 0.00 3.10
401 402 1.537776 GGATGCATCGGTGTGAGAGAG 60.538 57.143 20.15 0.00 0.00 3.20
402 403 1.406898 GATGCATCGGTGTGAGAGAGA 59.593 52.381 11.68 0.00 0.00 3.10
403 404 1.256812 TGCATCGGTGTGAGAGAGAA 58.743 50.000 0.00 0.00 0.00 2.87
404 405 1.618343 TGCATCGGTGTGAGAGAGAAA 59.382 47.619 0.00 0.00 0.00 2.52
405 406 2.037121 TGCATCGGTGTGAGAGAGAAAA 59.963 45.455 0.00 0.00 0.00 2.29
406 407 2.413453 GCATCGGTGTGAGAGAGAAAAC 59.587 50.000 0.00 0.00 0.00 2.43
407 408 2.417339 TCGGTGTGAGAGAGAAAACG 57.583 50.000 0.00 0.00 0.00 3.60
408 409 1.951602 TCGGTGTGAGAGAGAAAACGA 59.048 47.619 0.00 0.00 0.00 3.85
409 410 2.031069 TCGGTGTGAGAGAGAAAACGAG 60.031 50.000 0.00 0.00 0.00 4.18
410 411 2.031069 CGGTGTGAGAGAGAAAACGAGA 60.031 50.000 0.00 0.00 0.00 4.04
411 412 3.570559 GGTGTGAGAGAGAAAACGAGAG 58.429 50.000 0.00 0.00 0.00 3.20
412 413 3.253677 GGTGTGAGAGAGAAAACGAGAGA 59.746 47.826 0.00 0.00 0.00 3.10
413 414 4.082463 GGTGTGAGAGAGAAAACGAGAGAT 60.082 45.833 0.00 0.00 0.00 2.75
414 415 4.856487 GTGTGAGAGAGAAAACGAGAGATG 59.144 45.833 0.00 0.00 0.00 2.90
415 416 4.762251 TGTGAGAGAGAAAACGAGAGATGA 59.238 41.667 0.00 0.00 0.00 2.92
416 417 5.106357 TGTGAGAGAGAAAACGAGAGATGAG 60.106 44.000 0.00 0.00 0.00 2.90
417 418 5.123186 GTGAGAGAGAAAACGAGAGATGAGA 59.877 44.000 0.00 0.00 0.00 3.27
418 419 5.353956 TGAGAGAGAAAACGAGAGATGAGAG 59.646 44.000 0.00 0.00 0.00 3.20
419 420 5.496556 AGAGAGAAAACGAGAGATGAGAGA 58.503 41.667 0.00 0.00 0.00 3.10
420 421 5.586243 AGAGAGAAAACGAGAGATGAGAGAG 59.414 44.000 0.00 0.00 0.00 3.20
421 422 4.096382 AGAGAAAACGAGAGATGAGAGAGC 59.904 45.833 0.00 0.00 0.00 4.09
422 423 3.130340 AGAAAACGAGAGATGAGAGAGCC 59.870 47.826 0.00 0.00 0.00 4.70
423 424 2.435372 AACGAGAGATGAGAGAGCCT 57.565 50.000 0.00 0.00 0.00 4.58
424 425 3.569194 AACGAGAGATGAGAGAGCCTA 57.431 47.619 0.00 0.00 0.00 3.93
712 713 1.227089 CTTCTCCCCTGACGCATCG 60.227 63.158 0.00 0.00 0.00 3.84
754 755 4.402192 CGAACAGCGGATGATCGT 57.598 55.556 16.24 0.00 45.95 3.73
800 801 1.961394 AGAACAAGAGCAGGTACACGA 59.039 47.619 0.00 0.00 0.00 4.35
991 993 5.794687 TGCTGTAATGTAGGATTTTGTCG 57.205 39.130 0.00 0.00 0.00 4.35
1061 1063 2.484889 GGGAGAGTTCATACGGATTGC 58.515 52.381 0.00 0.00 0.00 3.56
1104 1106 5.222007 GGGTGGAGATATTGGAATGTCAGAT 60.222 44.000 0.00 0.00 0.00 2.90
1316 1608 2.203401 CTCTCAAGCTGCTGCATCTAC 58.797 52.381 18.42 0.00 42.74 2.59
1350 1642 4.142049 CCCAGAGTGACTAGAAGTTCATCC 60.142 50.000 5.50 0.00 0.00 3.51
1373 1665 1.920325 CTGCTGGAGGGAGTGGGAA 60.920 63.158 0.00 0.00 0.00 3.97
1379 1671 0.547954 GGAGGGAGTGGGAAAGGAGT 60.548 60.000 0.00 0.00 0.00 3.85
1393 1685 1.650528 AGGAGTTGGAAGAGGGACAG 58.349 55.000 0.00 0.00 0.00 3.51
1394 1686 0.615850 GGAGTTGGAAGAGGGACAGG 59.384 60.000 0.00 0.00 0.00 4.00
1401 1693 1.343478 GGAAGAGGGACAGGATCTGGA 60.343 57.143 0.00 0.00 35.51 3.86
1417 1727 1.216678 CTGGAAGAGGGAGAGGAGCTA 59.783 57.143 0.00 0.00 34.07 3.32
1420 1730 2.489073 GGAAGAGGGAGAGGAGCTAGAG 60.489 59.091 0.00 0.00 0.00 2.43
1421 1731 2.206322 AGAGGGAGAGGAGCTAGAGA 57.794 55.000 0.00 0.00 0.00 3.10
1440 1762 1.002069 AAGGGACAGGATTCATGCCA 58.998 50.000 11.84 0.00 0.00 4.92
1473 1795 5.363005 TGCTAGTGGGAATTACTAGAGTTCC 59.637 44.000 15.20 13.53 46.71 3.62
1498 1820 7.546667 CCTTGATGATGTGGTTATTTTGGAAAG 59.453 37.037 0.00 0.00 0.00 2.62
1603 1926 3.071874 TGATGTGAACATGGTCCTTCC 57.928 47.619 8.62 0.00 36.57 3.46
1610 1933 2.537633 ACATGGTCCTTCCGGTACTA 57.462 50.000 0.00 0.00 39.52 1.82
1611 1934 2.823959 ACATGGTCCTTCCGGTACTAA 58.176 47.619 0.00 0.00 39.52 2.24
1612 1935 3.381335 ACATGGTCCTTCCGGTACTAAT 58.619 45.455 0.00 0.00 39.52 1.73
1658 2048 1.442526 CGCCTGATGCTTGTGATCCC 61.443 60.000 0.00 0.00 38.05 3.85
1659 2049 0.106819 GCCTGATGCTTGTGATCCCT 60.107 55.000 0.00 0.00 36.87 4.20
1660 2050 1.141657 GCCTGATGCTTGTGATCCCTA 59.858 52.381 0.00 0.00 36.87 3.53
1661 2051 2.421952 GCCTGATGCTTGTGATCCCTAA 60.422 50.000 0.00 0.00 36.87 2.69
1662 2052 3.474600 CCTGATGCTTGTGATCCCTAAG 58.525 50.000 0.00 0.00 0.00 2.18
1663 2053 3.118112 CCTGATGCTTGTGATCCCTAAGT 60.118 47.826 0.00 0.00 0.00 2.24
1665 2055 2.113860 TGCTTGTGATCCCTAAGTGC 57.886 50.000 0.00 0.00 0.00 4.40
1666 2056 1.350684 TGCTTGTGATCCCTAAGTGCA 59.649 47.619 0.00 0.00 0.00 4.57
1670 2060 4.439289 GCTTGTGATCCCTAAGTGCATTTC 60.439 45.833 0.00 0.00 0.00 2.17
1680 2070 2.969443 AGTGCATTTCGTGTTACTGC 57.031 45.000 0.00 0.00 0.00 4.40
1685 2075 2.724174 GCATTTCGTGTTACTGCCAAAC 59.276 45.455 0.00 0.00 0.00 2.93
1688 2078 1.493772 TCGTGTTACTGCCAAACGAG 58.506 50.000 0.00 0.00 38.26 4.18
1702 2099 6.216569 TGCCAAACGAGCAATATTTGTTTAA 58.783 32.000 0.00 0.00 37.28 1.52
1729 2126 9.559958 GTTTAGTGTTATTGTCAAATGATCCTG 57.440 33.333 0.00 0.00 0.00 3.86
1730 2127 9.513906 TTTAGTGTTATTGTCAAATGATCCTGA 57.486 29.630 0.00 0.00 0.00 3.86
1798 2196 5.174395 TGACCACTTTGAAATTTGGTGTTG 58.826 37.500 14.13 0.00 42.60 3.33
1813 2211 1.867233 GTGTTGAGTGTACTGTGCTGG 59.133 52.381 0.00 0.00 0.00 4.85
1834 2232 4.403113 TGGTACTGCTAATTGATCGGTGTA 59.597 41.667 0.00 0.00 0.00 2.90
1836 2234 5.813672 GGTACTGCTAATTGATCGGTGTAAA 59.186 40.000 0.00 0.00 0.00 2.01
1872 2270 8.822805 TCCTCTTAAAGTATGTCCATGTAGTTT 58.177 33.333 0.00 0.00 0.00 2.66
1881 2279 4.713553 TGTCCATGTAGTTTCTTCTTGCA 58.286 39.130 0.00 0.00 0.00 4.08
1918 2374 9.414295 TGTCTGTGTACTGTATTTGTATTGTAC 57.586 33.333 0.00 0.00 0.00 2.90
1938 2395 4.900635 ACACTCACATCCAGTCAAAAAC 57.099 40.909 0.00 0.00 0.00 2.43
1956 2413 8.116136 GTCAAAAACTGGAAAATTTTGCTGTAG 58.884 33.333 26.87 17.16 41.50 2.74
1973 2430 6.530120 TGCTGTAGAAAGTATCAAAAGGTGA 58.470 36.000 0.00 0.00 41.67 4.02
2017 2517 7.658179 TGAGAAATTCAGACATACACAACTC 57.342 36.000 0.00 0.00 0.00 3.01
2023 2523 7.984422 ATTCAGACATACACAACTCATTTGA 57.016 32.000 0.00 0.00 38.73 2.69
2060 2560 9.850198 TTCATTCCAATATGATTCAGATACACA 57.150 29.630 0.00 0.00 34.67 3.72
2061 2561 9.498176 TCATTCCAATATGATTCAGATACACAG 57.502 33.333 0.00 0.00 29.82 3.66
2063 2563 5.928264 TCCAATATGATTCAGATACACAGCG 59.072 40.000 0.00 0.00 0.00 5.18
2064 2564 5.928264 CCAATATGATTCAGATACACAGCGA 59.072 40.000 0.00 0.00 0.00 4.93
2066 2566 7.118825 CCAATATGATTCAGATACACAGCGATT 59.881 37.037 0.00 0.00 0.00 3.34
2067 2567 9.143631 CAATATGATTCAGATACACAGCGATTA 57.856 33.333 0.00 0.00 0.00 1.75
2072 2621 5.079689 TCAGATACACAGCGATTAAACCA 57.920 39.130 0.00 0.00 0.00 3.67
2088 2637 0.676782 ACCATGCGACTAAACCAGCC 60.677 55.000 0.00 0.00 0.00 4.85
2155 2723 4.532126 TCACATCTTTCCTGTCACACCTAT 59.468 41.667 0.00 0.00 0.00 2.57
2199 2767 4.840680 TCAGTCTTCTTCTCCAATTCCTCA 59.159 41.667 0.00 0.00 0.00 3.86
2200 2768 5.307976 TCAGTCTTCTTCTCCAATTCCTCAA 59.692 40.000 0.00 0.00 0.00 3.02
2202 2770 6.093771 CAGTCTTCTTCTCCAATTCCTCAATG 59.906 42.308 0.00 0.00 0.00 2.82
2205 2773 7.338957 GTCTTCTTCTCCAATTCCTCAATGAAT 59.661 37.037 0.00 0.00 36.53 2.57
2229 2797 3.055963 CAGCAACTTCTCTCTCACTGGAT 60.056 47.826 0.00 0.00 0.00 3.41
2272 2840 2.040813 AGCATCCACACTTTGTCCTGAT 59.959 45.455 0.00 0.00 0.00 2.90
2304 2872 5.975693 ACAAATCACGGATAAATGGTGTT 57.024 34.783 0.00 0.00 33.51 3.32
2348 2916 1.205417 GAACCCATGCTGTCCAATTGG 59.795 52.381 19.08 19.08 0.00 3.16
2395 2963 2.534990 AGAACAGAGGGGAACAGAGAG 58.465 52.381 0.00 0.00 0.00 3.20
2406 2974 2.810852 GGAACAGAGAGAGCAAACAAGG 59.189 50.000 0.00 0.00 0.00 3.61
2409 2977 1.072965 CAGAGAGAGCAAACAAGGGGT 59.927 52.381 0.00 0.00 0.00 4.95
2418 2986 5.011023 AGAGCAAACAAGGGGTGAAATTTAG 59.989 40.000 0.00 0.00 0.00 1.85
2419 2987 3.745975 GCAAACAAGGGGTGAAATTTAGC 59.254 43.478 0.00 0.00 0.00 3.09
2421 2989 5.610398 CAAACAAGGGGTGAAATTTAGCTT 58.390 37.500 0.00 0.00 0.00 3.74
2422 2990 6.740122 GCAAACAAGGGGTGAAATTTAGCTTA 60.740 38.462 0.00 0.00 0.00 3.09
2424 2992 4.770531 ACAAGGGGTGAAATTTAGCTTACC 59.229 41.667 0.00 0.00 0.00 2.85
2425 2993 4.668138 AGGGGTGAAATTTAGCTTACCA 57.332 40.909 0.00 0.00 0.00 3.25
2426 2994 5.005628 AGGGGTGAAATTTAGCTTACCAA 57.994 39.130 0.00 0.00 0.00 3.67
2427 2995 5.016831 AGGGGTGAAATTTAGCTTACCAAG 58.983 41.667 0.00 0.00 0.00 3.61
2428 2996 5.014202 GGGGTGAAATTTAGCTTACCAAGA 58.986 41.667 0.00 0.00 0.00 3.02
2429 2997 5.125578 GGGGTGAAATTTAGCTTACCAAGAG 59.874 44.000 0.00 0.00 0.00 2.85
2430 2998 5.944007 GGGTGAAATTTAGCTTACCAAGAGA 59.056 40.000 0.00 0.00 0.00 3.10
2431 2999 6.094186 GGGTGAAATTTAGCTTACCAAGAGAG 59.906 42.308 0.00 0.00 0.00 3.20
2432 3000 6.403746 GGTGAAATTTAGCTTACCAAGAGAGC 60.404 42.308 0.00 0.00 36.68 4.09
2434 3002 6.372659 TGAAATTTAGCTTACCAAGAGAGCTG 59.627 38.462 7.30 0.00 45.66 4.24
2435 3003 5.683876 ATTTAGCTTACCAAGAGAGCTGA 57.316 39.130 7.30 0.00 45.66 4.26
2436 3004 4.457834 TTAGCTTACCAAGAGAGCTGAC 57.542 45.455 7.30 0.00 45.66 3.51
2437 3005 1.552792 AGCTTACCAAGAGAGCTGACC 59.447 52.381 0.00 0.00 44.53 4.02
2438 3006 1.406205 GCTTACCAAGAGAGCTGACCC 60.406 57.143 0.00 0.00 33.72 4.46
2439 3007 2.183679 CTTACCAAGAGAGCTGACCCT 58.816 52.381 0.00 0.00 0.00 4.34
2440 3008 1.853963 TACCAAGAGAGCTGACCCTC 58.146 55.000 0.00 0.00 0.00 4.30
2441 3009 0.907230 ACCAAGAGAGCTGACCCTCC 60.907 60.000 0.00 0.00 32.17 4.30
2442 3010 0.617249 CCAAGAGAGCTGACCCTCCT 60.617 60.000 0.00 0.00 32.17 3.69
2443 3011 1.342474 CCAAGAGAGCTGACCCTCCTA 60.342 57.143 0.00 0.00 32.17 2.94
2444 3012 1.754226 CAAGAGAGCTGACCCTCCTAC 59.246 57.143 0.00 0.00 32.17 3.18
2445 3013 0.106918 AGAGAGCTGACCCTCCTACG 60.107 60.000 0.00 0.00 32.17 3.51
2446 3014 1.730451 GAGAGCTGACCCTCCTACGC 61.730 65.000 0.00 0.00 32.17 4.42
2447 3015 2.760385 AGCTGACCCTCCTACGCC 60.760 66.667 0.00 0.00 0.00 5.68
2448 3016 2.760385 GCTGACCCTCCTACGCCT 60.760 66.667 0.00 0.00 0.00 5.52
2449 3017 2.787567 GCTGACCCTCCTACGCCTC 61.788 68.421 0.00 0.00 0.00 4.70
2450 3018 1.076632 CTGACCCTCCTACGCCTCT 60.077 63.158 0.00 0.00 0.00 3.69
2451 3019 1.076923 TGACCCTCCTACGCCTCTC 60.077 63.158 0.00 0.00 0.00 3.20
2452 3020 1.829096 GACCCTCCTACGCCTCTCC 60.829 68.421 0.00 0.00 0.00 3.71
2453 3021 2.287264 GACCCTCCTACGCCTCTCCT 62.287 65.000 0.00 0.00 0.00 3.69
2454 3022 1.075896 CCCTCCTACGCCTCTCCTT 60.076 63.158 0.00 0.00 0.00 3.36
2455 3023 1.110518 CCCTCCTACGCCTCTCCTTC 61.111 65.000 0.00 0.00 0.00 3.46
2456 3024 1.448922 CCTCCTACGCCTCTCCTTCG 61.449 65.000 0.00 0.00 0.00 3.79
2457 3025 0.464013 CTCCTACGCCTCTCCTTCGA 60.464 60.000 0.00 0.00 0.00 3.71
2458 3026 0.034767 TCCTACGCCTCTCCTTCGAA 60.035 55.000 0.00 0.00 0.00 3.71
2459 3027 1.033574 CCTACGCCTCTCCTTCGAAT 58.966 55.000 0.00 0.00 0.00 3.34
2460 3028 1.001158 CCTACGCCTCTCCTTCGAATC 60.001 57.143 0.00 0.00 0.00 2.52
2461 3029 1.001158 CTACGCCTCTCCTTCGAATCC 60.001 57.143 0.00 0.00 0.00 3.01
2462 3030 1.068250 CGCCTCTCCTTCGAATCCC 59.932 63.158 0.00 0.00 0.00 3.85
2463 3031 1.068250 GCCTCTCCTTCGAATCCCG 59.932 63.158 0.00 0.00 40.25 5.14
2464 3032 1.068250 CCTCTCCTTCGAATCCCGC 59.932 63.158 0.00 0.00 38.37 6.13
2465 3033 1.068250 CTCTCCTTCGAATCCCGCC 59.932 63.158 0.00 0.00 38.37 6.13
2466 3034 1.676678 CTCTCCTTCGAATCCCGCCA 61.677 60.000 0.00 0.00 38.37 5.69
2467 3035 1.521681 CTCCTTCGAATCCCGCCAC 60.522 63.158 0.00 0.00 38.37 5.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.969628 TCAATTTTTGTTGCCACCGT 57.030 40.000 0.00 0.00 0.00 4.83
1 2 2.032979 GCTTCAATTTTTGTTGCCACCG 60.033 45.455 0.00 0.00 0.00 4.94
2 3 3.002553 CAGCTTCAATTTTTGTTGCCACC 59.997 43.478 0.00 0.00 33.20 4.61
3 4 3.002553 CCAGCTTCAATTTTTGTTGCCAC 59.997 43.478 0.00 0.00 33.20 5.01
4 5 3.118482 TCCAGCTTCAATTTTTGTTGCCA 60.118 39.130 0.00 0.00 33.20 4.92
5 6 3.465871 TCCAGCTTCAATTTTTGTTGCC 58.534 40.909 0.00 0.00 33.20 4.52
6 7 4.152938 GGATCCAGCTTCAATTTTTGTTGC 59.847 41.667 6.95 0.00 0.00 4.17
7 8 5.299148 TGGATCCAGCTTCAATTTTTGTTG 58.701 37.500 11.44 0.00 0.00 3.33
8 9 5.549742 TGGATCCAGCTTCAATTTTTGTT 57.450 34.783 11.44 0.00 0.00 2.83
9 10 5.163322 TGTTGGATCCAGCTTCAATTTTTGT 60.163 36.000 26.58 0.00 0.00 2.83
10 11 5.299148 TGTTGGATCCAGCTTCAATTTTTG 58.701 37.500 26.58 0.00 0.00 2.44
11 12 5.549742 TGTTGGATCCAGCTTCAATTTTT 57.450 34.783 26.58 0.00 0.00 1.94
12 13 5.549742 TTGTTGGATCCAGCTTCAATTTT 57.450 34.783 26.58 0.00 0.00 1.82
13 14 5.549742 TTTGTTGGATCCAGCTTCAATTT 57.450 34.783 26.58 0.00 0.00 1.82
14 15 5.549742 TTTTGTTGGATCCAGCTTCAATT 57.450 34.783 26.58 0.00 0.00 2.32
15 16 5.549742 TTTTTGTTGGATCCAGCTTCAAT 57.450 34.783 26.58 0.00 0.00 2.57
34 35 4.101898 GGATTTGTAACTGGGGGTGTTTTT 59.898 41.667 0.00 0.00 0.00 1.94
35 36 3.644265 GGATTTGTAACTGGGGGTGTTTT 59.356 43.478 0.00 0.00 0.00 2.43
36 37 3.236047 GGATTTGTAACTGGGGGTGTTT 58.764 45.455 0.00 0.00 0.00 2.83
37 38 2.816337 CGGATTTGTAACTGGGGGTGTT 60.816 50.000 0.00 0.00 0.00 3.32
38 39 1.271707 CGGATTTGTAACTGGGGGTGT 60.272 52.381 0.00 0.00 0.00 4.16
39 40 1.003812 TCGGATTTGTAACTGGGGGTG 59.996 52.381 0.00 0.00 0.00 4.61
40 41 1.280998 CTCGGATTTGTAACTGGGGGT 59.719 52.381 0.00 0.00 0.00 4.95
41 42 2.017113 GCTCGGATTTGTAACTGGGGG 61.017 57.143 0.00 0.00 0.00 5.40
42 43 1.339631 TGCTCGGATTTGTAACTGGGG 60.340 52.381 0.00 0.00 0.00 4.96
43 44 2.107950 TGCTCGGATTTGTAACTGGG 57.892 50.000 0.00 0.00 0.00 4.45
44 45 4.497473 TTTTGCTCGGATTTGTAACTGG 57.503 40.909 0.00 0.00 0.00 4.00
64 65 8.558973 TTGTTTTGTTGGAATCAGTGATTTTT 57.441 26.923 19.19 0.00 31.89 1.94
65 66 8.558973 TTTGTTTTGTTGGAATCAGTGATTTT 57.441 26.923 19.19 0.00 31.89 1.82
66 67 8.040132 TCTTTGTTTTGTTGGAATCAGTGATTT 58.960 29.630 19.19 3.85 31.89 2.17
67 68 7.492344 GTCTTTGTTTTGTTGGAATCAGTGATT 59.508 33.333 18.31 18.31 34.71 2.57
68 69 6.980397 GTCTTTGTTTTGTTGGAATCAGTGAT 59.020 34.615 0.00 0.00 0.00 3.06
69 70 6.329496 GTCTTTGTTTTGTTGGAATCAGTGA 58.671 36.000 0.00 0.00 0.00 3.41
70 71 5.519927 GGTCTTTGTTTTGTTGGAATCAGTG 59.480 40.000 0.00 0.00 0.00 3.66
71 72 5.395214 GGGTCTTTGTTTTGTTGGAATCAGT 60.395 40.000 0.00 0.00 0.00 3.41
72 73 5.049828 GGGTCTTTGTTTTGTTGGAATCAG 58.950 41.667 0.00 0.00 0.00 2.90
73 74 4.467795 TGGGTCTTTGTTTTGTTGGAATCA 59.532 37.500 0.00 0.00 0.00 2.57
74 75 5.017294 TGGGTCTTTGTTTTGTTGGAATC 57.983 39.130 0.00 0.00 0.00 2.52
75 76 4.469586 ACTGGGTCTTTGTTTTGTTGGAAT 59.530 37.500 0.00 0.00 0.00 3.01
76 77 3.835395 ACTGGGTCTTTGTTTTGTTGGAA 59.165 39.130 0.00 0.00 0.00 3.53
77 78 3.436243 ACTGGGTCTTTGTTTTGTTGGA 58.564 40.909 0.00 0.00 0.00 3.53
78 79 3.885724 ACTGGGTCTTTGTTTTGTTGG 57.114 42.857 0.00 0.00 0.00 3.77
79 80 4.565022 ACAACTGGGTCTTTGTTTTGTTG 58.435 39.130 0.00 0.00 39.27 3.33
80 81 4.882842 ACAACTGGGTCTTTGTTTTGTT 57.117 36.364 0.00 0.00 31.78 2.83
81 82 4.142249 GCTACAACTGGGTCTTTGTTTTGT 60.142 41.667 0.00 0.00 37.19 2.83
82 83 4.142271 TGCTACAACTGGGTCTTTGTTTTG 60.142 41.667 0.00 0.00 37.19 2.44
83 84 4.020543 TGCTACAACTGGGTCTTTGTTTT 58.979 39.130 0.00 0.00 37.19 2.43
84 85 3.626930 TGCTACAACTGGGTCTTTGTTT 58.373 40.909 0.00 0.00 37.19 2.83
85 86 3.290948 TGCTACAACTGGGTCTTTGTT 57.709 42.857 0.00 0.00 37.19 2.83
86 87 3.290948 TTGCTACAACTGGGTCTTTGT 57.709 42.857 0.00 0.00 39.31 2.83
87 88 4.647424 TTTTGCTACAACTGGGTCTTTG 57.353 40.909 0.00 0.00 0.00 2.77
88 89 5.869649 ATTTTTGCTACAACTGGGTCTTT 57.130 34.783 0.00 0.00 0.00 2.52
89 90 5.600696 CAATTTTTGCTACAACTGGGTCTT 58.399 37.500 0.00 0.00 0.00 3.01
90 91 5.200368 CAATTTTTGCTACAACTGGGTCT 57.800 39.130 0.00 0.00 0.00 3.85
104 105 2.622546 GCAATGGGCAGCAATTTTTG 57.377 45.000 0.00 0.00 43.97 2.44
116 117 2.825836 GACGGGAGCTGCAATGGG 60.826 66.667 7.79 0.00 0.00 4.00
117 118 3.197790 CGACGGGAGCTGCAATGG 61.198 66.667 7.79 0.00 0.00 3.16
118 119 2.125552 TCGACGGGAGCTGCAATG 60.126 61.111 7.79 0.00 0.00 2.82
119 120 2.185350 CTCGACGGGAGCTGCAAT 59.815 61.111 7.79 0.00 35.63 3.56
120 121 4.069232 CCTCGACGGGAGCTGCAA 62.069 66.667 7.79 0.00 41.71 4.08
130 131 4.796231 CTGGAACCCGCCTCGACG 62.796 72.222 0.00 0.00 0.00 5.12
133 134 4.697756 TTGCTGGAACCCGCCTCG 62.698 66.667 4.93 0.00 0.00 4.63
134 135 3.056328 GTTGCTGGAACCCGCCTC 61.056 66.667 0.00 0.00 0.00 4.70
135 136 3.553095 GAGTTGCTGGAACCCGCCT 62.553 63.158 8.50 0.00 34.80 5.52
136 137 3.056328 GAGTTGCTGGAACCCGCC 61.056 66.667 8.50 0.00 34.80 6.13
137 138 3.056328 GGAGTTGCTGGAACCCGC 61.056 66.667 8.50 0.42 34.80 6.13
138 139 2.742372 CGGAGTTGCTGGAACCCG 60.742 66.667 20.52 20.52 40.03 5.28
139 140 2.359975 CCGGAGTTGCTGGAACCC 60.360 66.667 8.50 8.62 46.81 4.11
140 141 3.056328 GCCGGAGTTGCTGGAACC 61.056 66.667 5.05 0.64 46.81 3.62
141 142 3.423154 CGCCGGAGTTGCTGGAAC 61.423 66.667 5.05 3.63 46.81 3.62
142 143 3.936203 ACGCCGGAGTTGCTGGAA 61.936 61.111 5.05 0.00 46.81 3.53
143 144 4.680237 CACGCCGGAGTTGCTGGA 62.680 66.667 8.62 0.00 46.81 3.86
145 146 4.988598 ACCACGCCGGAGTTGCTG 62.989 66.667 8.62 0.00 38.63 4.41
146 147 4.988598 CACCACGCCGGAGTTGCT 62.989 66.667 8.62 0.00 38.63 3.91
148 149 3.345808 CACACCACGCCGGAGTTG 61.346 66.667 8.62 8.21 36.27 3.16
177 178 3.149648 AAGGGAATGCATGGCGGC 61.150 61.111 0.00 0.00 0.00 6.53
178 179 2.788640 CCAAGGGAATGCATGGCGG 61.789 63.158 0.00 0.00 0.00 6.13
179 180 0.751277 TACCAAGGGAATGCATGGCG 60.751 55.000 0.00 0.00 36.37 5.69
180 181 0.746659 GTACCAAGGGAATGCATGGC 59.253 55.000 0.00 0.00 36.37 4.40
181 182 2.142356 TGTACCAAGGGAATGCATGG 57.858 50.000 0.00 0.00 38.91 3.66
182 183 3.091545 AGTTGTACCAAGGGAATGCATG 58.908 45.455 0.00 0.00 0.00 4.06
183 184 3.091545 CAGTTGTACCAAGGGAATGCAT 58.908 45.455 0.00 0.00 0.00 3.96
184 185 2.513753 CAGTTGTACCAAGGGAATGCA 58.486 47.619 0.00 0.00 0.00 3.96
185 186 1.818674 CCAGTTGTACCAAGGGAATGC 59.181 52.381 0.00 0.00 0.00 3.56
186 187 3.347216 CTCCAGTTGTACCAAGGGAATG 58.653 50.000 0.00 0.00 0.00 2.67
187 188 2.290960 GCTCCAGTTGTACCAAGGGAAT 60.291 50.000 0.00 0.00 0.00 3.01
188 189 1.073284 GCTCCAGTTGTACCAAGGGAA 59.927 52.381 0.00 0.00 0.00 3.97
189 190 0.690762 GCTCCAGTTGTACCAAGGGA 59.309 55.000 0.00 0.00 0.00 4.20
190 191 0.400213 TGCTCCAGTTGTACCAAGGG 59.600 55.000 0.00 0.00 0.00 3.95
191 192 1.880027 GTTGCTCCAGTTGTACCAAGG 59.120 52.381 0.00 0.00 0.00 3.61
192 193 2.808543 GAGTTGCTCCAGTTGTACCAAG 59.191 50.000 0.00 0.00 0.00 3.61
193 194 2.846193 GAGTTGCTCCAGTTGTACCAA 58.154 47.619 0.00 0.00 0.00 3.67
194 195 2.543777 GAGTTGCTCCAGTTGTACCA 57.456 50.000 0.00 0.00 0.00 3.25
205 206 4.681978 ACCACGCCGGAGTTGCTC 62.682 66.667 8.62 0.00 38.63 4.26
206 207 4.988598 CACCACGCCGGAGTTGCT 62.989 66.667 8.62 0.00 38.63 3.91
218 219 4.961511 TGTCCAGTCGCGCACCAC 62.962 66.667 8.75 0.00 0.00 4.16
219 220 4.228567 TTGTCCAGTCGCGCACCA 62.229 61.111 8.75 0.00 0.00 4.17
220 221 3.712881 GTTGTCCAGTCGCGCACC 61.713 66.667 8.75 0.00 0.00 5.01
221 222 2.658707 GAGTTGTCCAGTCGCGCAC 61.659 63.158 8.75 4.91 0.00 5.34
222 223 2.355837 GAGTTGTCCAGTCGCGCA 60.356 61.111 8.75 0.00 0.00 6.09
223 224 3.470567 CGAGTTGTCCAGTCGCGC 61.471 66.667 0.00 0.00 41.41 6.86
227 228 2.022129 CACCGCGAGTTGTCCAGTC 61.022 63.158 8.23 0.00 0.00 3.51
228 229 2.029073 CACCGCGAGTTGTCCAGT 59.971 61.111 8.23 0.00 0.00 4.00
229 230 2.738521 CCACCGCGAGTTGTCCAG 60.739 66.667 8.23 0.00 0.00 3.86
230 231 3.542676 ACCACCGCGAGTTGTCCA 61.543 61.111 8.23 0.00 0.00 4.02
231 232 3.041940 CACCACCGCGAGTTGTCC 61.042 66.667 8.23 0.00 0.00 4.02
232 233 3.041940 CCACCACCGCGAGTTGTC 61.042 66.667 8.23 0.00 0.00 3.18
233 234 3.857038 ACCACCACCGCGAGTTGT 61.857 61.111 8.23 2.84 0.00 3.32
234 235 3.345808 CACCACCACCGCGAGTTG 61.346 66.667 8.23 2.11 0.00 3.16
242 243 3.289834 CTGCTGTGCACCACCACC 61.290 66.667 15.69 0.00 34.85 4.61
243 244 2.203195 TCTGCTGTGCACCACCAC 60.203 61.111 15.69 0.00 33.79 4.16
244 245 2.203195 GTCTGCTGTGCACCACCA 60.203 61.111 15.69 7.66 33.79 4.17
245 246 2.203195 TGTCTGCTGTGCACCACC 60.203 61.111 15.69 2.83 33.79 4.61
246 247 2.901292 GCTGTCTGCTGTGCACCAC 61.901 63.158 15.69 6.83 38.95 4.16
247 248 2.592574 GCTGTCTGCTGTGCACCA 60.593 61.111 15.69 4.89 38.95 4.17
267 268 2.079020 TATACTAGCACCACCGCCGC 62.079 60.000 0.00 0.00 0.00 6.53
268 269 0.039437 CTATACTAGCACCACCGCCG 60.039 60.000 0.00 0.00 0.00 6.46
269 270 3.888093 CTATACTAGCACCACCGCC 57.112 57.895 0.00 0.00 0.00 6.13
299 300 3.188786 GACTCATGACCACGCGCC 61.189 66.667 5.73 0.00 0.00 6.53
300 301 2.432456 TGACTCATGACCACGCGC 60.432 61.111 5.73 0.00 0.00 6.86
301 302 1.080501 ACTGACTCATGACCACGCG 60.081 57.895 3.53 3.53 0.00 6.01
302 303 0.038251 TCACTGACTCATGACCACGC 60.038 55.000 0.00 0.00 0.00 5.34
303 304 2.265683 CATCACTGACTCATGACCACG 58.734 52.381 0.00 0.00 0.00 4.94
304 305 2.005451 GCATCACTGACTCATGACCAC 58.995 52.381 0.00 0.00 0.00 4.16
305 306 1.624813 TGCATCACTGACTCATGACCA 59.375 47.619 0.00 0.00 0.00 4.02
306 307 2.391616 TGCATCACTGACTCATGACC 57.608 50.000 0.00 0.00 0.00 4.02
307 308 3.487042 GCAATGCATCACTGACTCATGAC 60.487 47.826 0.00 0.00 0.00 3.06
308 309 2.681344 GCAATGCATCACTGACTCATGA 59.319 45.455 0.00 0.00 0.00 3.07
309 310 2.422127 TGCAATGCATCACTGACTCATG 59.578 45.455 2.72 0.00 31.71 3.07
310 311 2.683362 CTGCAATGCATCACTGACTCAT 59.317 45.455 8.91 0.00 38.13 2.90
311 312 2.081462 CTGCAATGCATCACTGACTCA 58.919 47.619 8.91 0.00 38.13 3.41
312 313 1.400846 CCTGCAATGCATCACTGACTC 59.599 52.381 8.91 0.00 38.13 3.36
313 314 1.003928 TCCTGCAATGCATCACTGACT 59.996 47.619 8.91 0.00 38.13 3.41
314 315 1.456296 TCCTGCAATGCATCACTGAC 58.544 50.000 8.91 0.00 38.13 3.51
315 316 2.430248 ATCCTGCAATGCATCACTGA 57.570 45.000 8.91 1.25 38.13 3.41
316 317 3.186909 CAAATCCTGCAATGCATCACTG 58.813 45.455 8.91 0.00 38.13 3.66
317 318 2.829720 ACAAATCCTGCAATGCATCACT 59.170 40.909 8.91 0.00 38.13 3.41
318 319 2.927477 CACAAATCCTGCAATGCATCAC 59.073 45.455 8.91 0.00 38.13 3.06
319 320 2.093921 CCACAAATCCTGCAATGCATCA 60.094 45.455 8.91 0.00 38.13 3.07
320 321 2.093869 ACCACAAATCCTGCAATGCATC 60.094 45.455 8.91 0.00 38.13 3.91
321 322 1.903860 ACCACAAATCCTGCAATGCAT 59.096 42.857 8.91 0.00 38.13 3.96
322 323 1.001068 CACCACAAATCCTGCAATGCA 59.999 47.619 7.99 7.99 36.92 3.96
323 324 1.001181 ACACCACAAATCCTGCAATGC 59.999 47.619 0.00 0.00 0.00 3.56
324 325 2.559668 AGACACCACAAATCCTGCAATG 59.440 45.455 0.00 0.00 0.00 2.82
325 326 2.559668 CAGACACCACAAATCCTGCAAT 59.440 45.455 0.00 0.00 0.00 3.56
326 327 1.955778 CAGACACCACAAATCCTGCAA 59.044 47.619 0.00 0.00 0.00 4.08
327 328 1.608055 CAGACACCACAAATCCTGCA 58.392 50.000 0.00 0.00 0.00 4.41
328 329 0.883833 CCAGACACCACAAATCCTGC 59.116 55.000 0.00 0.00 0.00 4.85
329 330 1.881973 CACCAGACACCACAAATCCTG 59.118 52.381 0.00 0.00 0.00 3.86
330 331 1.494721 ACACCAGACACCACAAATCCT 59.505 47.619 0.00 0.00 0.00 3.24
331 332 1.608590 CACACCAGACACCACAAATCC 59.391 52.381 0.00 0.00 0.00 3.01
332 333 2.297701 ACACACCAGACACCACAAATC 58.702 47.619 0.00 0.00 0.00 2.17
333 334 2.426738 CAACACACCAGACACCACAAAT 59.573 45.455 0.00 0.00 0.00 2.32
334 335 1.815613 CAACACACCAGACACCACAAA 59.184 47.619 0.00 0.00 0.00 2.83
335 336 1.458398 CAACACACCAGACACCACAA 58.542 50.000 0.00 0.00 0.00 3.33
336 337 0.393673 CCAACACACCAGACACCACA 60.394 55.000 0.00 0.00 0.00 4.17
337 338 0.107410 TCCAACACACCAGACACCAC 60.107 55.000 0.00 0.00 0.00 4.16
338 339 0.180171 CTCCAACACACCAGACACCA 59.820 55.000 0.00 0.00 0.00 4.17
339 340 0.468226 TCTCCAACACACCAGACACC 59.532 55.000 0.00 0.00 0.00 4.16
340 341 2.158957 TCTTCTCCAACACACCAGACAC 60.159 50.000 0.00 0.00 0.00 3.67
341 342 2.115427 TCTTCTCCAACACACCAGACA 58.885 47.619 0.00 0.00 0.00 3.41
342 343 2.910688 TCTTCTCCAACACACCAGAC 57.089 50.000 0.00 0.00 0.00 3.51
343 344 3.433598 CCTTTCTTCTCCAACACACCAGA 60.434 47.826 0.00 0.00 0.00 3.86
344 345 2.880890 CCTTTCTTCTCCAACACACCAG 59.119 50.000 0.00 0.00 0.00 4.00
345 346 2.422803 CCCTTTCTTCTCCAACACACCA 60.423 50.000 0.00 0.00 0.00 4.17
346 347 2.230660 CCCTTTCTTCTCCAACACACC 58.769 52.381 0.00 0.00 0.00 4.16
347 348 2.158667 TCCCCTTTCTTCTCCAACACAC 60.159 50.000 0.00 0.00 0.00 3.82
348 349 2.106511 CTCCCCTTTCTTCTCCAACACA 59.893 50.000 0.00 0.00 0.00 3.72
349 350 2.372172 TCTCCCCTTTCTTCTCCAACAC 59.628 50.000 0.00 0.00 0.00 3.32
350 351 2.701551 TCTCCCCTTTCTTCTCCAACA 58.298 47.619 0.00 0.00 0.00 3.33
351 352 3.790089 TTCTCCCCTTTCTTCTCCAAC 57.210 47.619 0.00 0.00 0.00 3.77
352 353 3.980698 TCTTTCTCCCCTTTCTTCTCCAA 59.019 43.478 0.00 0.00 0.00 3.53
353 354 3.584848 CTCTTTCTCCCCTTTCTTCTCCA 59.415 47.826 0.00 0.00 0.00 3.86
354 355 3.841255 TCTCTTTCTCCCCTTTCTTCTCC 59.159 47.826 0.00 0.00 0.00 3.71
355 356 4.775253 TCTCTCTTTCTCCCCTTTCTTCTC 59.225 45.833 0.00 0.00 0.00 2.87
356 357 4.757692 TCTCTCTTTCTCCCCTTTCTTCT 58.242 43.478 0.00 0.00 0.00 2.85
357 358 5.427378 CATCTCTCTTTCTCCCCTTTCTTC 58.573 45.833 0.00 0.00 0.00 2.87
358 359 4.227073 CCATCTCTCTTTCTCCCCTTTCTT 59.773 45.833 0.00 0.00 0.00 2.52
359 360 3.779738 CCATCTCTCTTTCTCCCCTTTCT 59.220 47.826 0.00 0.00 0.00 2.52
360 361 3.118075 CCCATCTCTCTTTCTCCCCTTTC 60.118 52.174 0.00 0.00 0.00 2.62
361 362 2.849318 CCCATCTCTCTTTCTCCCCTTT 59.151 50.000 0.00 0.00 0.00 3.11
362 363 2.046447 TCCCATCTCTCTTTCTCCCCTT 59.954 50.000 0.00 0.00 0.00 3.95
363 364 1.653918 TCCCATCTCTCTTTCTCCCCT 59.346 52.381 0.00 0.00 0.00 4.79
364 365 2.182516 TCCCATCTCTCTTTCTCCCC 57.817 55.000 0.00 0.00 0.00 4.81
365 366 2.224499 GCATCCCATCTCTCTTTCTCCC 60.224 54.545 0.00 0.00 0.00 4.30
366 367 2.437281 TGCATCCCATCTCTCTTTCTCC 59.563 50.000 0.00 0.00 0.00 3.71
367 368 3.834489 TGCATCCCATCTCTCTTTCTC 57.166 47.619 0.00 0.00 0.00 2.87
368 369 3.244146 CGATGCATCCCATCTCTCTTTCT 60.244 47.826 20.87 0.00 46.61 2.52
369 370 3.065655 CGATGCATCCCATCTCTCTTTC 58.934 50.000 20.87 0.00 46.61 2.62
370 371 2.224475 CCGATGCATCCCATCTCTCTTT 60.224 50.000 20.87 0.00 46.61 2.52
371 372 1.347050 CCGATGCATCCCATCTCTCTT 59.653 52.381 20.87 0.00 46.61 2.85
372 373 0.975135 CCGATGCATCCCATCTCTCT 59.025 55.000 20.87 0.00 46.61 3.10
373 374 0.683973 ACCGATGCATCCCATCTCTC 59.316 55.000 20.87 0.00 46.61 3.20
374 375 0.395686 CACCGATGCATCCCATCTCT 59.604 55.000 20.87 0.00 46.61 3.10
375 376 0.107456 ACACCGATGCATCCCATCTC 59.893 55.000 20.87 0.00 46.61 2.75
376 377 0.179037 CACACCGATGCATCCCATCT 60.179 55.000 20.87 0.00 46.61 2.90
377 378 0.179048 TCACACCGATGCATCCCATC 60.179 55.000 20.87 0.00 45.58 3.51
378 379 0.179037 CTCACACCGATGCATCCCAT 60.179 55.000 20.87 3.66 36.70 4.00
379 380 1.221566 CTCACACCGATGCATCCCA 59.778 57.895 20.87 0.00 0.00 4.37
380 381 0.531532 CTCTCACACCGATGCATCCC 60.532 60.000 20.87 0.00 0.00 3.85
381 382 0.461548 TCTCTCACACCGATGCATCC 59.538 55.000 20.87 3.71 0.00 3.51
382 383 1.406898 TCTCTCTCACACCGATGCATC 59.593 52.381 17.10 17.10 0.00 3.91
383 384 1.478631 TCTCTCTCACACCGATGCAT 58.521 50.000 0.00 0.00 0.00 3.96
384 385 1.256812 TTCTCTCTCACACCGATGCA 58.743 50.000 0.00 0.00 0.00 3.96
385 386 2.370281 TTTCTCTCTCACACCGATGC 57.630 50.000 0.00 0.00 0.00 3.91
386 387 2.663602 CGTTTTCTCTCTCACACCGATG 59.336 50.000 0.00 0.00 0.00 3.84
387 388 2.557056 TCGTTTTCTCTCTCACACCGAT 59.443 45.455 0.00 0.00 0.00 4.18
388 389 1.951602 TCGTTTTCTCTCTCACACCGA 59.048 47.619 0.00 0.00 0.00 4.69
389 390 2.031069 TCTCGTTTTCTCTCTCACACCG 60.031 50.000 0.00 0.00 0.00 4.94
390 391 3.253677 TCTCTCGTTTTCTCTCTCACACC 59.746 47.826 0.00 0.00 0.00 4.16
391 392 4.491234 TCTCTCGTTTTCTCTCTCACAC 57.509 45.455 0.00 0.00 0.00 3.82
392 393 4.762251 TCATCTCTCGTTTTCTCTCTCACA 59.238 41.667 0.00 0.00 0.00 3.58
393 394 5.123186 TCTCATCTCTCGTTTTCTCTCTCAC 59.877 44.000 0.00 0.00 0.00 3.51
394 395 5.249420 TCTCATCTCTCGTTTTCTCTCTCA 58.751 41.667 0.00 0.00 0.00 3.27
395 396 5.584649 TCTCTCATCTCTCGTTTTCTCTCTC 59.415 44.000 0.00 0.00 0.00 3.20
396 397 5.496556 TCTCTCATCTCTCGTTTTCTCTCT 58.503 41.667 0.00 0.00 0.00 3.10
397 398 5.730568 GCTCTCTCATCTCTCGTTTTCTCTC 60.731 48.000 0.00 0.00 0.00 3.20
398 399 4.096382 GCTCTCTCATCTCTCGTTTTCTCT 59.904 45.833 0.00 0.00 0.00 3.10
399 400 4.351192 GCTCTCTCATCTCTCGTTTTCTC 58.649 47.826 0.00 0.00 0.00 2.87
400 401 3.130340 GGCTCTCTCATCTCTCGTTTTCT 59.870 47.826 0.00 0.00 0.00 2.52
401 402 3.130340 AGGCTCTCTCATCTCTCGTTTTC 59.870 47.826 0.00 0.00 0.00 2.29
402 403 3.096092 AGGCTCTCTCATCTCTCGTTTT 58.904 45.455 0.00 0.00 0.00 2.43
403 404 2.733956 AGGCTCTCTCATCTCTCGTTT 58.266 47.619 0.00 0.00 0.00 3.60
404 405 2.435372 AGGCTCTCTCATCTCTCGTT 57.565 50.000 0.00 0.00 0.00 3.85
405 406 2.171659 TGTAGGCTCTCTCATCTCTCGT 59.828 50.000 0.00 0.00 0.00 4.18
406 407 2.807967 CTGTAGGCTCTCTCATCTCTCG 59.192 54.545 0.00 0.00 0.00 4.04
407 408 3.149196 CCTGTAGGCTCTCTCATCTCTC 58.851 54.545 0.00 0.00 0.00 3.20
408 409 2.158475 CCCTGTAGGCTCTCTCATCTCT 60.158 54.545 0.00 0.00 0.00 3.10
409 410 2.238521 CCCTGTAGGCTCTCTCATCTC 58.761 57.143 0.00 0.00 0.00 2.75
410 411 1.133199 CCCCTGTAGGCTCTCTCATCT 60.133 57.143 0.00 0.00 0.00 2.90
411 412 1.133325 TCCCCTGTAGGCTCTCTCATC 60.133 57.143 0.00 0.00 0.00 2.92
412 413 0.937441 TCCCCTGTAGGCTCTCTCAT 59.063 55.000 0.00 0.00 0.00 2.90
413 414 0.260230 CTCCCCTGTAGGCTCTCTCA 59.740 60.000 0.00 0.00 0.00 3.27
414 415 0.553819 TCTCCCCTGTAGGCTCTCTC 59.446 60.000 0.00 0.00 0.00 3.20
415 416 1.011595 TTCTCCCCTGTAGGCTCTCT 58.988 55.000 0.00 0.00 0.00 3.10
416 417 1.342574 ACTTCTCCCCTGTAGGCTCTC 60.343 57.143 0.00 0.00 0.00 3.20
417 418 0.713579 ACTTCTCCCCTGTAGGCTCT 59.286 55.000 0.00 0.00 0.00 4.09
418 419 1.116308 GACTTCTCCCCTGTAGGCTC 58.884 60.000 0.00 0.00 0.00 4.70
419 420 0.713579 AGACTTCTCCCCTGTAGGCT 59.286 55.000 0.00 0.00 0.00 4.58
420 421 0.827368 CAGACTTCTCCCCTGTAGGC 59.173 60.000 0.00 0.00 0.00 3.93
421 422 2.239681 ACAGACTTCTCCCCTGTAGG 57.760 55.000 0.00 0.00 39.15 3.18
422 423 4.625607 AAAACAGACTTCTCCCCTGTAG 57.374 45.455 0.00 0.00 39.93 2.74
423 424 6.293698 GTTTAAAACAGACTTCTCCCCTGTA 58.706 40.000 0.00 0.00 39.93 2.74
424 425 5.131067 GTTTAAAACAGACTTCTCCCCTGT 58.869 41.667 0.00 0.00 42.34 4.00
712 713 4.856607 CGCCGCGGAGGAGAAGTC 62.857 72.222 33.48 6.41 43.02 3.01
742 743 1.364171 GTGGCTACGATCATCCGCT 59.636 57.895 0.00 0.00 0.00 5.52
754 755 1.035932 GTGCTAGTCGGAGGTGGCTA 61.036 60.000 0.00 0.00 0.00 3.93
800 801 1.218316 GGACGCTCGGGAAGAACAT 59.782 57.895 0.00 0.00 0.00 2.71
901 902 4.409187 ACCTTAGCGAAAATTAAACCCCA 58.591 39.130 0.00 0.00 0.00 4.96
915 916 3.074412 ACAAAACCATCTGACCTTAGCG 58.926 45.455 0.00 0.00 0.00 4.26
971 973 5.580691 TCAGCGACAAAATCCTACATTACAG 59.419 40.000 0.00 0.00 0.00 2.74
991 993 1.820519 TGCTGGATCCATGTTTTCAGC 59.179 47.619 16.63 13.01 45.28 4.26
1061 1063 2.810274 CCCACATAATCAAGCGATGGAG 59.190 50.000 0.00 0.00 30.13 3.86
1125 1127 1.002868 GCCTTTCAGCTCTGGCAGA 60.003 57.895 17.68 17.68 44.34 4.26
1308 1600 1.555075 GGTGGTCTGAAGGTAGATGCA 59.445 52.381 0.00 0.00 0.00 3.96
1316 1608 0.322975 CACTCTGGGTGGTCTGAAGG 59.677 60.000 0.00 0.00 41.90 3.46
1373 1665 1.981495 CTGTCCCTCTTCCAACTCCTT 59.019 52.381 0.00 0.00 0.00 3.36
1379 1671 2.191400 CAGATCCTGTCCCTCTTCCAA 58.809 52.381 0.00 0.00 0.00 3.53
1393 1685 1.219213 TCCTCTCCCTCTTCCAGATCC 59.781 57.143 0.00 0.00 0.00 3.36
1394 1686 2.597455 CTCCTCTCCCTCTTCCAGATC 58.403 57.143 0.00 0.00 0.00 2.75
1401 1693 2.498441 TCTCTAGCTCCTCTCCCTCTT 58.502 52.381 0.00 0.00 0.00 2.85
1409 1719 2.306847 CTGTCCCTTCTCTAGCTCCTC 58.693 57.143 0.00 0.00 0.00 3.71
1417 1727 2.172293 GCATGAATCCTGTCCCTTCTCT 59.828 50.000 0.00 0.00 0.00 3.10
1420 1730 1.064463 TGGCATGAATCCTGTCCCTTC 60.064 52.381 0.00 0.00 0.00 3.46
1421 1731 1.002069 TGGCATGAATCCTGTCCCTT 58.998 50.000 0.00 0.00 0.00 3.95
1473 1795 8.090214 ACTTTCCAAAATAACCACATCATCAAG 58.910 33.333 0.00 0.00 0.00 3.02
1498 1820 4.752101 ACAAGCACTAGTTCATTCTGACAC 59.248 41.667 0.00 0.00 0.00 3.67
1658 2048 4.394795 GCAGTAACACGAAATGCACTTAG 58.605 43.478 0.00 0.00 36.88 2.18
1659 2049 3.187637 GGCAGTAACACGAAATGCACTTA 59.812 43.478 0.00 0.00 38.63 2.24
1660 2050 2.031157 GGCAGTAACACGAAATGCACTT 60.031 45.455 0.00 0.00 38.63 3.16
1661 2051 1.535462 GGCAGTAACACGAAATGCACT 59.465 47.619 0.00 0.00 38.63 4.40
1662 2052 1.265635 TGGCAGTAACACGAAATGCAC 59.734 47.619 0.00 0.00 38.63 4.57
1663 2053 1.598882 TGGCAGTAACACGAAATGCA 58.401 45.000 0.00 0.00 38.63 3.96
1665 2055 2.970609 CGTTTGGCAGTAACACGAAATG 59.029 45.455 3.24 0.00 32.51 2.32
1666 2056 2.873472 TCGTTTGGCAGTAACACGAAAT 59.127 40.909 3.24 0.00 36.96 2.17
1670 2060 0.110823 GCTCGTTTGGCAGTAACACG 60.111 55.000 3.24 1.82 0.00 4.49
1680 2070 7.867445 ACTTAAACAAATATTGCTCGTTTGG 57.133 32.000 12.34 9.10 37.20 3.28
1685 2075 9.607285 ACACTAAACTTAAACAAATATTGCTCG 57.393 29.630 0.00 0.00 0.00 5.03
1702 2099 9.520515 AGGATCATTTGACAATAACACTAAACT 57.479 29.630 0.00 0.00 0.00 2.66
1714 2111 6.127925 GCAGTACATTCAGGATCATTTGACAA 60.128 38.462 0.00 0.00 0.00 3.18
1729 2126 2.919229 GCAGCAAACATGCAGTACATTC 59.081 45.455 3.41 0.00 43.31 2.67
1730 2127 2.950433 GCAGCAAACATGCAGTACATT 58.050 42.857 3.41 0.00 43.31 2.71
1798 2196 2.927014 GCAGTACCAGCACAGTACACTC 60.927 54.545 11.88 0.13 42.09 3.51
1813 2211 6.897259 TTTACACCGATCAATTAGCAGTAC 57.103 37.500 0.00 0.00 0.00 2.73
1819 2217 6.363577 AGCACATTTACACCGATCAATTAG 57.636 37.500 0.00 0.00 0.00 1.73
1829 2227 3.821033 AGAGGAACAAGCACATTTACACC 59.179 43.478 0.00 0.00 0.00 4.16
1834 2232 6.715347 ACTTTAAGAGGAACAAGCACATTT 57.285 33.333 0.00 0.00 0.00 2.32
1836 2234 6.942576 ACATACTTTAAGAGGAACAAGCACAT 59.057 34.615 0.00 0.00 0.00 3.21
1902 2302 8.604035 GGATGTGAGTGTACAATACAAATACAG 58.396 37.037 0.00 0.00 40.93 2.74
1904 2360 8.487313 TGGATGTGAGTGTACAATACAAATAC 57.513 34.615 0.00 0.64 40.93 1.89
1905 2361 8.318412 ACTGGATGTGAGTGTACAATACAAATA 58.682 33.333 0.00 0.00 40.93 1.40
1913 2369 4.681074 TTGACTGGATGTGAGTGTACAA 57.319 40.909 0.00 0.00 33.69 2.41
1938 2395 9.346725 GATACTTTCTACAGCAAAATTTTCCAG 57.653 33.333 0.00 0.00 0.00 3.86
1945 2402 8.860088 ACCTTTTGATACTTTCTACAGCAAAAT 58.140 29.630 0.00 0.00 34.51 1.82
1969 2426 6.253512 CAGTTTTGACAGCTAAAGTTTTCACC 59.746 38.462 0.00 0.00 0.00 4.02
1973 2430 7.391148 TCTCAGTTTTGACAGCTAAAGTTTT 57.609 32.000 0.00 0.00 0.00 2.43
1980 2437 7.194607 CTGAATTTCTCAGTTTTGACAGCTA 57.805 36.000 0.00 0.00 45.76 3.32
2059 2559 1.665679 AGTCGCATGGTTTAATCGCTG 59.334 47.619 0.00 0.00 0.00 5.18
2060 2560 2.024176 AGTCGCATGGTTTAATCGCT 57.976 45.000 0.00 0.00 0.00 4.93
2061 2561 3.936902 TTAGTCGCATGGTTTAATCGC 57.063 42.857 0.00 0.00 0.00 4.58
2063 2563 5.554822 TGGTTTAGTCGCATGGTTTAATC 57.445 39.130 0.00 0.00 0.00 1.75
2064 2564 4.142469 GCTGGTTTAGTCGCATGGTTTAAT 60.142 41.667 0.00 0.00 0.00 1.40
2066 2566 2.745281 GCTGGTTTAGTCGCATGGTTTA 59.255 45.455 0.00 0.00 0.00 2.01
2067 2567 1.539827 GCTGGTTTAGTCGCATGGTTT 59.460 47.619 0.00 0.00 0.00 3.27
2072 2621 0.036164 TGTGGCTGGTTTAGTCGCAT 59.964 50.000 0.00 0.00 45.92 4.73
2088 2637 7.062605 GCAGTTTATGGTTTGATGATCTTTGTG 59.937 37.037 0.00 0.00 0.00 3.33
2199 2767 4.333690 AGAGAGAAGTTGCTGCATTCATT 58.666 39.130 15.92 5.65 0.00 2.57
2200 2768 3.940221 GAGAGAGAAGTTGCTGCATTCAT 59.060 43.478 15.92 6.21 0.00 2.57
2202 2770 3.124976 GTGAGAGAGAAGTTGCTGCATTC 59.875 47.826 1.84 5.45 0.00 2.67
2205 2773 1.690893 AGTGAGAGAGAAGTTGCTGCA 59.309 47.619 0.00 0.00 0.00 4.41
2229 2797 0.397941 AGGCTGCTGTTGCTAGTCAA 59.602 50.000 0.00 0.00 40.48 3.18
2272 2840 2.304470 TCCGTGATTTGTTGGGAGATCA 59.696 45.455 0.00 0.00 0.00 2.92
2348 2916 9.358872 ACTTCTCTTGTTCTGAAATTTGTTTTC 57.641 29.630 0.00 0.00 43.42 2.29
2370 2938 3.833070 TCTGTTCCCCTCTGTTCTACTTC 59.167 47.826 0.00 0.00 0.00 3.01
2395 2963 3.751479 AATTTCACCCCTTGTTTGCTC 57.249 42.857 0.00 0.00 0.00 4.26
2406 2974 5.944007 TCTCTTGGTAAGCTAAATTTCACCC 59.056 40.000 0.00 0.00 0.00 4.61
2409 2977 6.372659 CAGCTCTCTTGGTAAGCTAAATTTCA 59.627 38.462 0.00 0.00 44.30 2.69
2418 2986 1.406205 GGGTCAGCTCTCTTGGTAAGC 60.406 57.143 0.00 0.00 36.27 3.09
2419 2987 2.167487 GAGGGTCAGCTCTCTTGGTAAG 59.833 54.545 0.00 0.00 39.14 2.34
2421 2989 1.619977 GGAGGGTCAGCTCTCTTGGTA 60.620 57.143 0.69 0.00 41.89 3.25
2422 2990 0.907230 GGAGGGTCAGCTCTCTTGGT 60.907 60.000 0.69 0.00 41.89 3.67
2424 2992 1.754226 GTAGGAGGGTCAGCTCTCTTG 59.246 57.143 0.69 0.00 41.89 3.02
2425 2993 1.683629 CGTAGGAGGGTCAGCTCTCTT 60.684 57.143 0.69 0.00 41.89 2.85
2426 2994 0.106918 CGTAGGAGGGTCAGCTCTCT 60.107 60.000 0.69 0.00 41.89 3.10
2427 2995 1.730451 GCGTAGGAGGGTCAGCTCTC 61.730 65.000 0.00 0.00 41.48 3.20
2428 2996 1.755008 GCGTAGGAGGGTCAGCTCT 60.755 63.158 0.00 0.00 0.00 4.09
2429 2997 2.787567 GGCGTAGGAGGGTCAGCTC 61.788 68.421 0.00 0.00 0.00 4.09
2430 2998 2.760385 GGCGTAGGAGGGTCAGCT 60.760 66.667 0.00 0.00 0.00 4.24
2431 2999 2.760385 AGGCGTAGGAGGGTCAGC 60.760 66.667 0.00 0.00 0.00 4.26
2432 3000 1.076632 AGAGGCGTAGGAGGGTCAG 60.077 63.158 0.00 0.00 0.00 3.51
2433 3001 1.076923 GAGAGGCGTAGGAGGGTCA 60.077 63.158 0.00 0.00 0.00 4.02
2434 3002 1.829096 GGAGAGGCGTAGGAGGGTC 60.829 68.421 0.00 0.00 0.00 4.46
2435 3003 1.876546 AAGGAGAGGCGTAGGAGGGT 61.877 60.000 0.00 0.00 0.00 4.34
2436 3004 1.075896 AAGGAGAGGCGTAGGAGGG 60.076 63.158 0.00 0.00 0.00 4.30
2437 3005 1.448922 CGAAGGAGAGGCGTAGGAGG 61.449 65.000 0.00 0.00 0.00 4.30
2438 3006 0.464013 TCGAAGGAGAGGCGTAGGAG 60.464 60.000 0.00 0.00 0.00 3.69
2439 3007 0.034767 TTCGAAGGAGAGGCGTAGGA 60.035 55.000 0.00 0.00 0.00 2.94
2440 3008 1.001158 GATTCGAAGGAGAGGCGTAGG 60.001 57.143 3.35 0.00 0.00 3.18
2441 3009 1.001158 GGATTCGAAGGAGAGGCGTAG 60.001 57.143 3.35 0.00 0.00 3.51
2442 3010 1.030457 GGATTCGAAGGAGAGGCGTA 58.970 55.000 3.35 0.00 0.00 4.42
2443 3011 1.677637 GGGATTCGAAGGAGAGGCGT 61.678 60.000 3.35 0.00 0.00 5.68
2444 3012 1.068250 GGGATTCGAAGGAGAGGCG 59.932 63.158 3.35 0.00 0.00 5.52
2445 3013 1.068250 CGGGATTCGAAGGAGAGGC 59.932 63.158 3.35 0.00 42.43 4.70
2446 3014 1.068250 GCGGGATTCGAAGGAGAGG 59.932 63.158 3.35 0.00 42.43 3.69
2447 3015 1.068250 GGCGGGATTCGAAGGAGAG 59.932 63.158 3.35 0.00 42.43 3.20
2448 3016 1.684391 TGGCGGGATTCGAAGGAGA 60.684 57.895 3.35 0.00 42.43 3.71
2449 3017 1.521681 GTGGCGGGATTCGAAGGAG 60.522 63.158 3.35 0.00 42.43 3.69
2450 3018 2.582436 GTGGCGGGATTCGAAGGA 59.418 61.111 3.35 0.00 42.43 3.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.