Multiple sequence alignment - TraesCS2B01G511700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G511700 chr2B 100.000 4997 0 0 1 4997 707465712 707460716 0.000000e+00 9228.0
1 TraesCS2B01G511700 chr2B 93.205 2605 116 26 1 2565 707693885 707691302 0.000000e+00 3773.0
2 TraesCS2B01G511700 chr2B 93.737 2475 101 25 127 2565 707634067 707631611 0.000000e+00 3663.0
3 TraesCS2B01G511700 chr2B 93.705 1398 67 8 2702 4096 707631606 707630227 0.000000e+00 2074.0
4 TraesCS2B01G511700 chr2B 92.883 1391 75 7 2702 4086 707691297 707689925 0.000000e+00 1999.0
5 TraesCS2B01G511700 chr2B 85.805 1254 145 20 2756 4000 707671632 707670403 0.000000e+00 1299.0
6 TraesCS2B01G511700 chr2B 83.967 1341 186 19 2755 4082 707415506 707414182 0.000000e+00 1258.0
7 TraesCS2B01G511700 chr2B 79.238 1469 239 37 659 2086 707673590 707672147 0.000000e+00 963.0
8 TraesCS2B01G511700 chr2B 78.915 1456 248 36 662 2086 707417449 707416022 0.000000e+00 933.0
9 TraesCS2B01G511700 chr2B 73.077 338 87 4 1494 1829 707785253 707784918 3.160000e-22 117.0
10 TraesCS2B01G511700 chr2D 91.543 2294 130 25 301 2565 585913350 585915608 0.000000e+00 3103.0
11 TraesCS2B01G511700 chr2D 92.832 1395 79 7 2702 4093 585915613 585916989 0.000000e+00 2002.0
12 TraesCS2B01G511700 chr2D 83.597 1329 175 17 2756 4074 586153472 586154767 0.000000e+00 1206.0
13 TraesCS2B01G511700 chr2D 82.128 1203 193 19 2804 4000 619331292 619332478 0.000000e+00 1011.0
14 TraesCS2B01G511700 chr2D 79.491 1453 242 32 661 2083 586151535 586152961 0.000000e+00 981.0
15 TraesCS2B01G511700 chr2D 86.888 694 83 6 2755 3443 585894365 585893675 0.000000e+00 771.0
16 TraesCS2B01G511700 chr2D 77.187 903 186 14 4094 4985 196141095 196141988 4.460000e-140 508.0
17 TraesCS2B01G511700 chr2D 76.079 857 181 19 1053 1891 610886695 610887545 4.620000e-115 425.0
18 TraesCS2B01G511700 chr2D 83.462 260 39 4 1 256 102649432 102649691 6.470000e-59 239.0
19 TraesCS2B01G511700 chr2D 76.240 383 69 15 2184 2549 610891884 610892261 3.070000e-42 183.0
20 TraesCS2B01G511700 chr2D 74.611 386 76 13 2197 2565 610887783 610888163 3.120000e-32 150.0
21 TraesCS2B01G511700 chr2D 72.953 403 99 7 1483 1880 619403419 619403816 1.130000e-26 132.0
22 TraesCS2B01G511700 chr2D 100.000 29 0 0 259 287 585913276 585913304 3.000000e-03 54.7
23 TraesCS2B01G511700 chr2A 94.782 1399 60 4 504 1894 720521562 720520169 0.000000e+00 2167.0
24 TraesCS2B01G511700 chr2A 94.130 1397 62 9 2702 4096 720315177 720313799 0.000000e+00 2108.0
25 TraesCS2B01G511700 chr2A 90.498 1305 93 16 2702 3998 721031698 721030417 0.000000e+00 1694.0
26 TraesCS2B01G511700 chr2A 89.123 1232 104 13 736 1962 721033457 721032251 0.000000e+00 1506.0
27 TraesCS2B01G511700 chr2A 84.512 1343 181 18 2755 4086 720060725 720059399 0.000000e+00 1303.0
28 TraesCS2B01G511700 chr2A 79.301 1459 249 33 659 2086 720062674 720061238 0.000000e+00 972.0
29 TraesCS2B01G511700 chr2A 88.571 665 58 9 1916 2565 720315843 720315182 0.000000e+00 791.0
30 TraesCS2B01G511700 chr2A 87.449 494 37 10 2087 2565 721032186 721031703 3.400000e-151 545.0
31 TraesCS2B01G511700 chr2A 91.373 255 16 3 260 510 720521909 720521657 1.330000e-90 344.0
32 TraesCS2B01G511700 chr2A 92.701 137 7 1 2564 2700 65192991 65193124 1.420000e-45 195.0
33 TraesCS2B01G511700 chr2A 75.085 293 65 8 1536 1824 720228002 720227714 4.060000e-26 130.0
34 TraesCS2B01G511700 chr1B 87.500 904 110 2 4094 4997 97505411 97506311 0.000000e+00 1040.0
35 TraesCS2B01G511700 chr1B 83.525 261 39 4 1 257 658443753 658443493 1.800000e-59 241.0
36 TraesCS2B01G511700 chr1B 92.806 139 7 1 2555 2693 277456290 277456425 1.100000e-46 198.0
37 TraesCS2B01G511700 chr1B 93.382 136 5 2 2563 2698 613039584 613039453 1.100000e-46 198.0
38 TraesCS2B01G511700 chr1B 91.608 143 8 2 2562 2704 102627855 102627717 1.420000e-45 195.0
39 TraesCS2B01G511700 chr7D 85.304 905 128 4 4094 4997 312175286 312174386 0.000000e+00 929.0
40 TraesCS2B01G511700 chr7D 84.344 907 133 7 4094 4997 564212962 564212062 0.000000e+00 880.0
41 TraesCS2B01G511700 chr7D 83.525 261 38 5 1 257 66483062 66483321 6.470000e-59 239.0
42 TraesCS2B01G511700 chr7D 85.965 228 27 4 35 258 249431518 249431292 6.470000e-59 239.0
43 TraesCS2B01G511700 chr7D 90.132 152 8 5 2551 2700 71873839 71873693 1.840000e-44 191.0
44 TraesCS2B01G511700 chr3D 84.129 901 133 6 4098 4997 302003560 302002669 0.000000e+00 863.0
45 TraesCS2B01G511700 chr3D 78.174 898 176 16 4108 4993 30215267 30216156 5.650000e-154 555.0
46 TraesCS2B01G511700 chr4B 82.861 846 133 10 4094 4933 517629744 517630583 0.000000e+00 749.0
47 TraesCS2B01G511700 chr4B 83.525 261 38 5 1 256 644871176 644870916 6.470000e-59 239.0
48 TraesCS2B01G511700 chr4B 85.841 226 29 3 35 257 87802608 87802383 2.330000e-58 237.0
49 TraesCS2B01G511700 chr4B 93.382 136 5 2 2563 2698 576982441 576982572 1.100000e-46 198.0
50 TraesCS2B01G511700 chr1A 82.014 884 147 10 4094 4974 100464399 100465273 0.000000e+00 741.0
51 TraesCS2B01G511700 chr7B 79.123 867 163 12 4094 4950 4796288 4797146 2.590000e-162 582.0
52 TraesCS2B01G511700 chr4A 88.372 258 27 3 1 256 661545336 661545592 1.750000e-79 307.0
53 TraesCS2B01G511700 chr6B 76.555 418 90 7 1471 1884 675451257 675450844 6.510000e-54 222.0
54 TraesCS2B01G511700 chr3B 94.030 134 5 1 2560 2693 666705174 666705044 3.050000e-47 200.0
55 TraesCS2B01G511700 chr3B 92.199 141 6 3 2554 2693 807600435 807600571 1.420000e-45 195.0
56 TraesCS2B01G511700 chr1D 91.549 142 8 2 2563 2704 368493812 368493675 5.110000e-45 193.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G511700 chr2B 707460716 707465712 4996 True 9228.000000 9228 100.000000 1 4997 1 chr2B.!!$R1 4996
1 TraesCS2B01G511700 chr2B 707689925 707693885 3960 True 2886.000000 3773 93.044000 1 4086 2 chr2B.!!$R6 4085
2 TraesCS2B01G511700 chr2B 707630227 707634067 3840 True 2868.500000 3663 93.721000 127 4096 2 chr2B.!!$R4 3969
3 TraesCS2B01G511700 chr2B 707670403 707673590 3187 True 1131.000000 1299 82.521500 659 4000 2 chr2B.!!$R5 3341
4 TraesCS2B01G511700 chr2B 707414182 707417449 3267 True 1095.500000 1258 81.441000 662 4082 2 chr2B.!!$R3 3420
5 TraesCS2B01G511700 chr2D 585913276 585916989 3713 False 1719.900000 3103 94.791667 259 4093 3 chr2D.!!$F5 3834
6 TraesCS2B01G511700 chr2D 586151535 586154767 3232 False 1093.500000 1206 81.544000 661 4074 2 chr2D.!!$F6 3413
7 TraesCS2B01G511700 chr2D 619331292 619332478 1186 False 1011.000000 1011 82.128000 2804 4000 1 chr2D.!!$F3 1196
8 TraesCS2B01G511700 chr2D 585893675 585894365 690 True 771.000000 771 86.888000 2755 3443 1 chr2D.!!$R1 688
9 TraesCS2B01G511700 chr2D 196141095 196141988 893 False 508.000000 508 77.187000 4094 4985 1 chr2D.!!$F2 891
10 TraesCS2B01G511700 chr2D 610886695 610892261 5566 False 252.666667 425 75.643333 1053 2565 3 chr2D.!!$F7 1512
11 TraesCS2B01G511700 chr2A 720313799 720315843 2044 True 1449.500000 2108 91.350500 1916 4096 2 chr2A.!!$R3 2180
12 TraesCS2B01G511700 chr2A 720520169 720521909 1740 True 1255.500000 2167 93.077500 260 1894 2 chr2A.!!$R4 1634
13 TraesCS2B01G511700 chr2A 721030417 721033457 3040 True 1248.333333 1694 89.023333 736 3998 3 chr2A.!!$R5 3262
14 TraesCS2B01G511700 chr2A 720059399 720062674 3275 True 1137.500000 1303 81.906500 659 4086 2 chr2A.!!$R2 3427
15 TraesCS2B01G511700 chr1B 97505411 97506311 900 False 1040.000000 1040 87.500000 4094 4997 1 chr1B.!!$F1 903
16 TraesCS2B01G511700 chr7D 312174386 312175286 900 True 929.000000 929 85.304000 4094 4997 1 chr7D.!!$R3 903
17 TraesCS2B01G511700 chr7D 564212062 564212962 900 True 880.000000 880 84.344000 4094 4997 1 chr7D.!!$R4 903
18 TraesCS2B01G511700 chr3D 302002669 302003560 891 True 863.000000 863 84.129000 4098 4997 1 chr3D.!!$R1 899
19 TraesCS2B01G511700 chr3D 30215267 30216156 889 False 555.000000 555 78.174000 4108 4993 1 chr3D.!!$F1 885
20 TraesCS2B01G511700 chr4B 517629744 517630583 839 False 749.000000 749 82.861000 4094 4933 1 chr4B.!!$F1 839
21 TraesCS2B01G511700 chr1A 100464399 100465273 874 False 741.000000 741 82.014000 4094 4974 1 chr1A.!!$F1 880
22 TraesCS2B01G511700 chr7B 4796288 4797146 858 False 582.000000 582 79.123000 4094 4950 1 chr7B.!!$F1 856

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
181 183 1.073025 TCGCTCATGTTTGGTGGCT 59.927 52.632 0.00 0.0 0.00 4.75 F
803 953 1.677552 GCTTCTTCTCCCCGGACAA 59.322 57.895 0.73 0.0 0.00 3.18 F
2279 2567 1.162698 CATGTGTGCTGCTACTTGCT 58.837 50.000 0.00 0.0 43.37 3.91 F
2582 2899 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.0 44.66 2.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1038 1188 0.790207 CATTTGGTGACTGGACGACG 59.210 55.0 0.00 0.00 0.00 5.12 R
2566 2883 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.0 13.64 4.95 46.06 4.20 R
3795 4145 0.601311 AGTCTTGAACGCACAGGAGC 60.601 55.0 0.00 0.00 0.00 4.70 R
4443 7326 0.107703 CGCTGGATCTGGTGCCTTTA 60.108 55.0 0.00 0.00 0.00 1.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 1.748879 GCTTGCGGGCCAATGTCTA 60.749 57.895 4.39 0.00 31.91 2.59
23 24 1.172812 GCGGGCCAATGTCTAATCCC 61.173 60.000 4.39 0.00 0.00 3.85
62 63 3.286751 TTCTTGGTGCCGCTGTGC 61.287 61.111 0.00 0.00 0.00 4.57
86 87 3.206150 CGGGCTTCTACATTACTTGCAT 58.794 45.455 0.00 0.00 0.00 3.96
110 111 8.721019 ATGTTTTCATGATTTTCTTTGTGTGT 57.279 26.923 0.00 0.00 39.30 3.72
134 135 5.535333 AGTAGTGTGCGTTGTGTTATAAGT 58.465 37.500 0.00 0.00 0.00 2.24
156 158 7.661536 AGTTGTTCTATCAGCTCCTTGTATA 57.338 36.000 0.00 0.00 0.00 1.47
172 174 4.316205 TGTATATTTCGGTCGCTCATGT 57.684 40.909 0.00 0.00 0.00 3.21
181 183 1.073025 TCGCTCATGTTTGGTGGCT 59.927 52.632 0.00 0.00 0.00 4.75
192 194 3.957497 TGTTTGGTGGCTTTGTGTAATCT 59.043 39.130 0.00 0.00 0.00 2.40
232 234 6.959639 TTGTTAATTCAAAGTCAGGCTCTT 57.040 33.333 0.00 0.00 0.00 2.85
311 348 2.503061 CAGCAGGACCCTCCATCG 59.497 66.667 0.00 0.00 39.61 3.84
451 494 5.163913 ACACATACTACTCGTCACGTAGTTC 60.164 44.000 5.87 0.00 43.61 3.01
519 662 5.415077 ACACATACGAGTACTACTCTTGCTT 59.585 40.000 13.28 0.00 42.92 3.91
789 939 3.546397 GACTTCGCGCTCGGCTTC 61.546 66.667 5.56 0.00 40.44 3.86
790 940 3.973267 GACTTCGCGCTCGGCTTCT 62.973 63.158 5.56 0.00 40.44 2.85
791 941 2.811317 CTTCGCGCTCGGCTTCTT 60.811 61.111 5.56 0.00 40.44 2.52
803 953 1.677552 GCTTCTTCTCCCCGGACAA 59.322 57.895 0.73 0.00 0.00 3.18
1038 1188 2.095212 GCTTCTTGACACGGGGAATTTC 60.095 50.000 0.00 0.00 0.00 2.17
1256 1410 2.732619 GGAACGGGACTAGGCCCTG 61.733 68.421 31.66 25.25 46.44 4.45
1581 1776 1.483004 GAGCCCTCTGGTCCTAACTTC 59.517 57.143 0.00 0.00 35.38 3.01
1608 1803 4.279671 AGCGGATGTAGAAGAATCGAAGAT 59.720 41.667 0.00 0.00 45.12 2.40
1891 2089 3.046283 ACTCTCCTGGTATATGCACCA 57.954 47.619 0.00 0.00 46.46 4.17
1927 2134 5.059833 GCTTCTAGCCTTATGTTAGCATGT 58.940 41.667 1.80 0.00 34.48 3.21
1930 2141 6.425210 TCTAGCCTTATGTTAGCATGTCAT 57.575 37.500 1.80 0.00 36.58 3.06
2012 2235 8.298140 AGTATATCAGTAGCGGACAAATACTTC 58.702 37.037 0.00 0.00 0.00 3.01
2018 2243 5.995897 AGTAGCGGACAAATACTTCTTTTGT 59.004 36.000 1.72 1.72 46.89 2.83
2030 2255 7.964604 ATACTTCTTTTGTGTCCAACTACTC 57.035 36.000 0.00 0.00 0.00 2.59
2044 2269 4.142227 CCAACTACTCTGGTGTAAGCGTAT 60.142 45.833 0.00 0.00 36.92 3.06
2109 2335 4.474394 AGATCCCTTTTTAGCATAAGCCC 58.526 43.478 0.00 0.00 43.56 5.19
2140 2370 5.854010 TTCTAGAGGGTTATGTGTAGCAG 57.146 43.478 0.00 0.00 0.00 4.24
2153 2383 4.633175 TGTGTAGCAGTTTTATTCGGTCA 58.367 39.130 0.00 0.00 0.00 4.02
2256 2544 4.600111 TGGTAAAGATTGTACTCCCAACCT 59.400 41.667 0.00 0.00 0.00 3.50
2279 2567 1.162698 CATGTGTGCTGCTACTTGCT 58.837 50.000 0.00 0.00 43.37 3.91
2398 2687 8.971073 ACAAAAGTATTAATCTTTAGCAGGCAT 58.029 29.630 11.05 0.00 34.59 4.40
2565 2882 7.999679 AGGTTTTGGTAAAGTTTACAAGGTAC 58.000 34.615 23.64 14.80 0.00 3.34
2567 2884 8.131100 GGTTTTGGTAAAGTTTACAAGGTACTC 58.869 37.037 23.64 7.53 38.49 2.59
2568 2885 7.806409 TTTGGTAAAGTTTACAAGGTACTCC 57.194 36.000 23.64 7.04 38.49 3.85
2569 2886 5.868454 TGGTAAAGTTTACAAGGTACTCCC 58.132 41.667 23.64 6.41 38.49 4.30
2571 2888 6.169094 GGTAAAGTTTACAAGGTACTCCCTC 58.831 44.000 23.64 2.04 45.47 4.30
2572 2889 4.904895 AAGTTTACAAGGTACTCCCTCC 57.095 45.455 0.00 0.00 45.47 4.30
2573 2890 2.830321 AGTTTACAAGGTACTCCCTCCG 59.170 50.000 0.00 0.00 45.47 4.63
2574 2891 2.564504 GTTTACAAGGTACTCCCTCCGT 59.435 50.000 0.00 0.00 45.47 4.69
2575 2892 2.134789 TACAAGGTACTCCCTCCGTC 57.865 55.000 0.00 0.00 45.47 4.79
2576 2893 0.614134 ACAAGGTACTCCCTCCGTCC 60.614 60.000 0.00 0.00 45.47 4.79
2577 2894 1.379576 AAGGTACTCCCTCCGTCCG 60.380 63.158 0.00 0.00 45.47 4.79
2578 2895 2.832201 GGTACTCCCTCCGTCCGG 60.832 72.222 0.00 0.00 0.00 5.14
2579 2896 2.273449 GTACTCCCTCCGTCCGGA 59.727 66.667 0.00 0.00 42.90 5.14
2580 2897 1.379044 GTACTCCCTCCGTCCGGAA 60.379 63.158 5.23 0.00 44.66 4.30
2581 2898 0.967380 GTACTCCCTCCGTCCGGAAA 60.967 60.000 5.23 0.00 44.66 3.13
2582 2899 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
2583 2900 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
2584 2901 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
2585 2902 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
2586 2903 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
2587 2904 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
2588 2905 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
2589 2906 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
2590 2907 1.894466 TCCGTCCGGAAATACTTGTCA 59.106 47.619 5.23 0.00 42.05 3.58
2591 2908 2.498481 TCCGTCCGGAAATACTTGTCAT 59.502 45.455 5.23 0.00 42.05 3.06
2592 2909 2.864343 CCGTCCGGAAATACTTGTCATC 59.136 50.000 5.23 0.00 37.50 2.92
2593 2910 3.517602 CGTCCGGAAATACTTGTCATCA 58.482 45.455 5.23 0.00 0.00 3.07
2594 2911 3.930229 CGTCCGGAAATACTTGTCATCAA 59.070 43.478 5.23 0.00 0.00 2.57
2595 2912 4.390603 CGTCCGGAAATACTTGTCATCAAA 59.609 41.667 5.23 0.00 32.87 2.69
2596 2913 5.106869 CGTCCGGAAATACTTGTCATCAAAA 60.107 40.000 5.23 0.00 32.87 2.44
2597 2914 6.403200 CGTCCGGAAATACTTGTCATCAAAAT 60.403 38.462 5.23 0.00 32.87 1.82
2598 2915 7.201574 CGTCCGGAAATACTTGTCATCAAAATA 60.202 37.037 5.23 0.00 32.87 1.40
2599 2916 8.455682 GTCCGGAAATACTTGTCATCAAAATAA 58.544 33.333 5.23 0.00 32.87 1.40
2600 2917 9.015367 TCCGGAAATACTTGTCATCAAAATAAA 57.985 29.630 0.00 0.00 32.87 1.40
2601 2918 9.801873 CCGGAAATACTTGTCATCAAAATAAAT 57.198 29.630 0.00 0.00 32.87 1.40
2609 2926 9.942850 ACTTGTCATCAAAATAAATTAAAGGGG 57.057 29.630 0.00 0.00 32.87 4.79
2610 2927 9.382275 CTTGTCATCAAAATAAATTAAAGGGGG 57.618 33.333 0.00 0.00 32.87 5.40
2611 2928 8.442660 TGTCATCAAAATAAATTAAAGGGGGT 57.557 30.769 0.00 0.00 0.00 4.95
2612 2929 8.317679 TGTCATCAAAATAAATTAAAGGGGGTG 58.682 33.333 0.00 0.00 0.00 4.61
2613 2930 8.318412 GTCATCAAAATAAATTAAAGGGGGTGT 58.682 33.333 0.00 0.00 0.00 4.16
2614 2931 9.548631 TCATCAAAATAAATTAAAGGGGGTGTA 57.451 29.630 0.00 0.00 0.00 2.90
2617 2934 9.777008 TCAAAATAAATTAAAGGGGGTGTATCT 57.223 29.630 0.00 0.00 0.00 1.98
2623 2940 7.707467 AATTAAAGGGGGTGTATCTAGATGT 57.293 36.000 15.79 0.00 0.00 3.06
2624 2941 8.808240 AATTAAAGGGGGTGTATCTAGATGTA 57.192 34.615 15.79 1.12 0.00 2.29
2625 2942 8.990693 ATTAAAGGGGGTGTATCTAGATGTAT 57.009 34.615 15.79 0.00 0.00 2.29
2628 2945 8.990693 AAAGGGGGTGTATCTAGATGTATATT 57.009 34.615 15.79 0.00 0.00 1.28
2661 2978 9.713684 AGATACATCCCTTTTTATCCATTTTGA 57.286 29.630 0.00 0.00 0.00 2.69
2664 2981 8.378115 ACATCCCTTTTTATCCATTTTGATGA 57.622 30.769 0.00 0.00 32.39 2.92
2665 2982 8.260114 ACATCCCTTTTTATCCATTTTGATGAC 58.740 33.333 0.00 0.00 32.39 3.06
2666 2983 7.789202 TCCCTTTTTATCCATTTTGATGACA 57.211 32.000 0.00 0.00 0.00 3.58
2667 2984 8.200024 TCCCTTTTTATCCATTTTGATGACAA 57.800 30.769 0.00 0.00 0.00 3.18
2668 2985 8.093927 TCCCTTTTTATCCATTTTGATGACAAC 58.906 33.333 0.00 0.00 35.63 3.32
2669 2986 7.877097 CCCTTTTTATCCATTTTGATGACAACA 59.123 33.333 0.00 0.00 35.63 3.33
2670 2987 9.270640 CCTTTTTATCCATTTTGATGACAACAA 57.729 29.630 0.00 0.00 35.63 2.83
2672 2989 9.829507 TTTTTATCCATTTTGATGACAACAAGT 57.170 25.926 0.00 0.00 35.63 3.16
2678 2995 9.474920 TCCATTTTGATGACAACAAGTATTTTC 57.525 29.630 0.00 0.00 35.63 2.29
2679 2996 8.427012 CCATTTTGATGACAACAAGTATTTTCG 58.573 33.333 0.00 0.00 35.63 3.46
2680 2997 7.922505 TTTTGATGACAACAAGTATTTTCGG 57.077 32.000 0.00 0.00 35.63 4.30
2681 2998 6.869315 TTGATGACAACAAGTATTTTCGGA 57.131 33.333 0.00 0.00 0.00 4.55
2682 2999 6.236017 TGATGACAACAAGTATTTTCGGAC 57.764 37.500 0.00 0.00 0.00 4.79
2683 3000 4.718858 TGACAACAAGTATTTTCGGACG 57.281 40.909 0.00 0.00 0.00 4.79
2684 3001 3.495377 TGACAACAAGTATTTTCGGACGG 59.505 43.478 0.00 0.00 0.00 4.79
2685 3002 3.731089 ACAACAAGTATTTTCGGACGGA 58.269 40.909 0.00 0.00 0.00 4.69
2686 3003 3.744426 ACAACAAGTATTTTCGGACGGAG 59.256 43.478 0.00 0.00 0.00 4.63
2687 3004 2.968675 ACAAGTATTTTCGGACGGAGG 58.031 47.619 0.00 0.00 0.00 4.30
2688 3005 2.277084 CAAGTATTTTCGGACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
2689 3006 1.856629 AGTATTTTCGGACGGAGGGA 58.143 50.000 0.00 0.00 0.00 4.20
2690 3007 1.755380 AGTATTTTCGGACGGAGGGAG 59.245 52.381 0.00 0.00 0.00 4.30
2691 3008 1.479730 GTATTTTCGGACGGAGGGAGT 59.520 52.381 0.00 0.00 0.00 3.85
2692 3009 1.856629 ATTTTCGGACGGAGGGAGTA 58.143 50.000 0.00 0.00 0.00 2.59
2693 3010 1.631405 TTTTCGGACGGAGGGAGTAA 58.369 50.000 0.00 0.00 0.00 2.24
2694 3011 0.890683 TTTCGGACGGAGGGAGTAAC 59.109 55.000 0.00 0.00 0.00 2.50
2695 3012 0.251297 TTCGGACGGAGGGAGTAACA 60.251 55.000 0.00 0.00 0.00 2.41
2696 3013 0.033796 TCGGACGGAGGGAGTAACAT 60.034 55.000 0.00 0.00 0.00 2.71
2697 3014 1.212688 TCGGACGGAGGGAGTAACATA 59.787 52.381 0.00 0.00 0.00 2.29
2698 3015 2.158564 TCGGACGGAGGGAGTAACATAT 60.159 50.000 0.00 0.00 0.00 1.78
2699 3016 3.072915 TCGGACGGAGGGAGTAACATATA 59.927 47.826 0.00 0.00 0.00 0.86
2700 3017 4.015084 CGGACGGAGGGAGTAACATATAT 58.985 47.826 0.00 0.00 0.00 0.86
2753 3070 6.570058 CACGTTCTCTGTTTTTGAAGAATACG 59.430 38.462 0.00 0.00 36.31 3.06
2759 3076 9.273016 TCTCTGTTTTTGAAGAATACGAAGAAT 57.727 29.630 0.00 0.00 0.00 2.40
2877 3196 4.042934 TCAAAAGGCTTAGTAAGGGCTCTT 59.957 41.667 3.26 3.26 37.36 2.85
2987 3306 8.861086 TGTATTTATGGAGATGAGAGGTTACTC 58.139 37.037 0.00 0.00 44.31 2.59
3226 3558 6.139679 TCTTTACCTCCACCAAGATTCAAT 57.860 37.500 0.00 0.00 0.00 2.57
3266 3598 5.645067 CAGAGATCTCAAACCAAGCAACATA 59.355 40.000 24.39 0.00 0.00 2.29
3316 3648 3.627395 ATCAGACTTCGGTATGGCAAA 57.373 42.857 0.00 0.00 37.71 3.68
3455 3796 6.880529 CCCAAATTATGCACCTCTTTGAATTT 59.119 34.615 12.07 0.00 0.00 1.82
3716 4066 2.325661 TGGAGACTGTGGGAAGATGA 57.674 50.000 0.00 0.00 0.00 2.92
3732 4082 6.016276 GGGAAGATGAAAAAGCAACAGAACTA 60.016 38.462 0.00 0.00 0.00 2.24
3795 4145 1.000607 CTACGGTGTATCCATGTCGGG 60.001 57.143 0.00 0.00 35.57 5.14
3882 4232 0.813184 ATGAAAGTGCATTGCTCCCG 59.187 50.000 10.49 0.00 0.00 5.14
4006 4367 1.527370 GGGCGTTAGATGGGAAGCT 59.473 57.895 0.00 0.00 0.00 3.74
4010 4371 2.224305 GGCGTTAGATGGGAAGCTGTAT 60.224 50.000 0.00 0.00 0.00 2.29
4163 5004 1.340991 GGGCATAGAAAGAGCACCCAA 60.341 52.381 0.00 0.00 35.84 4.12
4246 5685 0.106819 GGTGGCCATCTTCTCTGCAT 60.107 55.000 9.72 0.00 0.00 3.96
4310 7178 2.576832 GGCTGGTGGCATGCAAAGT 61.577 57.895 21.36 0.00 44.01 2.66
4379 7255 2.184631 AGTGGAGGAGGGGAAGGGA 61.185 63.158 0.00 0.00 0.00 4.20
4469 7352 3.882326 CAGATCCAGCGCCCCCAT 61.882 66.667 2.29 0.00 0.00 4.00
4488 7371 3.790437 CCCCATCAGGCGCTCACT 61.790 66.667 7.64 0.00 0.00 3.41
4545 7428 2.930562 AGCCAGGGGAAGCGAACT 60.931 61.111 0.00 0.00 0.00 3.01
4558 7444 2.636412 CGAACTGCGTGGAGGAGGA 61.636 63.158 0.00 0.00 43.20 3.71
4584 7474 3.003173 CGGGAGCCAGGACCAGAA 61.003 66.667 0.00 0.00 0.00 3.02
4658 7548 4.468689 GGCCTCCGACCCCGAAAG 62.469 72.222 0.00 0.00 38.22 2.62
4757 7647 2.746277 GGCCACTTGCGACCGAAT 60.746 61.111 0.00 0.00 42.61 3.34
4793 7683 2.986306 GCTTCGAACGGAGGGACGA 61.986 63.158 4.67 0.00 37.61 4.20
4805 7695 2.486042 GGACGACTCGAGCTCCAC 59.514 66.667 13.61 0.46 0.00 4.02
4869 7759 0.107508 CCAACATGGCCTCACTCGAT 60.108 55.000 3.32 0.00 0.00 3.59
4901 7791 0.392863 CGATCCATGGCCACAACAGA 60.393 55.000 8.16 0.13 0.00 3.41
4925 7815 1.569072 GAAGGAGAGAGAGAGAGGGGT 59.431 57.143 0.00 0.00 0.00 4.95
4931 7821 2.540910 AGAGAGAGGGGTGGGGGA 60.541 66.667 0.00 0.00 0.00 4.81
4962 7855 1.886585 CGATAGAGAGGGATGCGGG 59.113 63.158 0.00 0.00 39.76 6.13
4993 7886 3.289407 ACACAGATCAGATCGAGAGGA 57.711 47.619 4.67 0.00 0.00 3.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.042930 AGGGAAGCCTCGGGGATT 59.957 61.111 3.35 3.35 44.73 3.01
23 24 2.269241 GGAACAGGGAAGCCTCGG 59.731 66.667 0.00 0.00 0.00 4.63
62 63 2.604046 AGTAATGTAGAAGCCCGCTG 57.396 50.000 0.00 0.00 0.00 5.18
73 74 9.926158 AAATCATGAAAACATGCAAGTAATGTA 57.074 25.926 0.00 0.00 37.27 2.29
86 87 9.299963 CTACACACAAAGAAAATCATGAAAACA 57.700 29.630 0.00 0.00 0.00 2.83
110 111 6.680810 ACTTATAACACAACGCACACTACTA 58.319 36.000 0.00 0.00 0.00 1.82
134 135 9.547753 GAAATATACAAGGAGCTGATAGAACAA 57.452 33.333 0.00 0.00 0.00 2.83
156 158 1.468520 CCAAACATGAGCGACCGAAAT 59.531 47.619 0.00 0.00 0.00 2.17
172 174 4.202202 CCAAGATTACACAAAGCCACCAAA 60.202 41.667 0.00 0.00 0.00 3.28
181 183 4.452825 TCAACCGACCAAGATTACACAAA 58.547 39.130 0.00 0.00 0.00 2.83
192 194 0.958091 CAAAGCCATCAACCGACCAA 59.042 50.000 0.00 0.00 0.00 3.67
789 939 1.597461 GGAGTTGTCCGGGGAGAAG 59.403 63.158 0.00 0.00 31.37 2.85
790 940 3.801620 GGAGTTGTCCGGGGAGAA 58.198 61.111 0.00 0.00 31.37 2.87
803 953 2.273179 TACAGGCTCGCGTTGGAGT 61.273 57.895 5.77 3.69 36.41 3.85
1038 1188 0.790207 CATTTGGTGACTGGACGACG 59.210 55.000 0.00 0.00 0.00 5.12
1297 1457 7.772166 TCATACAAGACAGTATTCTGGTACAG 58.228 38.462 4.24 0.00 44.51 2.74
1581 1776 3.733224 CGATTCTTCTACATCCGCTTGAG 59.267 47.826 0.00 0.00 0.00 3.02
1891 2089 3.802866 GCTAGAAGCCTAGAATGCAGTT 58.197 45.455 0.00 0.00 44.00 3.16
1998 2221 4.855531 ACACAAAAGAAGTATTTGTCCGC 58.144 39.130 1.92 0.00 45.27 5.54
2012 2235 4.273480 CACCAGAGTAGTTGGACACAAAAG 59.727 45.833 0.00 0.00 38.54 2.27
2018 2243 3.006537 GCTTACACCAGAGTAGTTGGACA 59.993 47.826 0.00 0.00 39.08 4.02
2030 2255 6.682746 AGATCTATCAATACGCTTACACCAG 58.317 40.000 0.00 0.00 0.00 4.00
2083 2309 7.888546 GGGCTTATGCTAAAAAGGGATCTAATA 59.111 37.037 0.13 0.00 39.59 0.98
2092 2318 2.760092 TGCTGGGCTTATGCTAAAAAGG 59.240 45.455 0.13 0.00 39.59 3.11
2109 2335 6.703607 CACATAACCCTCTAGAATTACTGCTG 59.296 42.308 0.00 0.00 0.00 4.41
2140 2370 6.009115 AGTGAACCATTGACCGAATAAAAC 57.991 37.500 0.00 0.00 0.00 2.43
2153 2383 2.592102 ACAGCCATGAGTGAACCATT 57.408 45.000 0.00 0.00 0.00 3.16
2223 2511 9.722056 GAGTACAATCTTTACCAATTTGCTATG 57.278 33.333 0.00 0.00 0.00 2.23
2279 2567 0.038021 TGCTGACAAGGGCTATGCAA 59.962 50.000 0.00 0.00 0.00 4.08
2398 2687 2.036098 TCGGTCCCTTCTGCCGTA 59.964 61.111 0.00 0.00 45.11 4.02
2416 2732 2.152830 ACGAGCTAAGGTATCCTAGCG 58.847 52.381 0.00 0.00 36.28 4.26
2565 2882 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
2566 2883 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
2567 2884 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
2568 2885 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
2569 2886 2.094390 TGACAAGTATTTCCGGACGGAG 60.094 50.000 13.64 3.15 46.06 4.63
2570 2887 1.894466 TGACAAGTATTTCCGGACGGA 59.106 47.619 1.83 9.76 43.52 4.69
2571 2888 2.373540 TGACAAGTATTTCCGGACGG 57.626 50.000 1.83 3.96 0.00 4.79
2572 2889 3.517602 TGATGACAAGTATTTCCGGACG 58.482 45.455 1.83 0.00 0.00 4.79
2573 2890 5.873179 TTTGATGACAAGTATTTCCGGAC 57.127 39.130 1.83 0.00 37.32 4.79
2574 2891 8.568676 TTATTTTGATGACAAGTATTTCCGGA 57.431 30.769 0.00 0.00 37.32 5.14
2575 2892 9.801873 ATTTATTTTGATGACAAGTATTTCCGG 57.198 29.630 0.00 0.00 37.32 5.14
2583 2900 9.942850 CCCCTTTAATTTATTTTGATGACAAGT 57.057 29.630 0.00 0.00 37.32 3.16
2584 2901 9.382275 CCCCCTTTAATTTATTTTGATGACAAG 57.618 33.333 0.00 0.00 37.32 3.16
2585 2902 8.885346 ACCCCCTTTAATTTATTTTGATGACAA 58.115 29.630 0.00 0.00 0.00 3.18
2586 2903 8.317679 CACCCCCTTTAATTTATTTTGATGACA 58.682 33.333 0.00 0.00 0.00 3.58
2587 2904 8.318412 ACACCCCCTTTAATTTATTTTGATGAC 58.682 33.333 0.00 0.00 0.00 3.06
2588 2905 8.442660 ACACCCCCTTTAATTTATTTTGATGA 57.557 30.769 0.00 0.00 0.00 2.92
2591 2908 9.777008 AGATACACCCCCTTTAATTTATTTTGA 57.223 29.630 0.00 0.00 0.00 2.69
2597 2914 9.232882 ACATCTAGATACACCCCCTTTAATTTA 57.767 33.333 4.54 0.00 0.00 1.40
2598 2915 8.114301 ACATCTAGATACACCCCCTTTAATTT 57.886 34.615 4.54 0.00 0.00 1.82
2599 2916 7.707467 ACATCTAGATACACCCCCTTTAATT 57.293 36.000 4.54 0.00 0.00 1.40
2600 2917 8.990693 ATACATCTAGATACACCCCCTTTAAT 57.009 34.615 4.54 0.00 0.00 1.40
2603 2920 8.990693 AATATACATCTAGATACACCCCCTTT 57.009 34.615 4.54 0.00 0.00 3.11
2635 2952 9.713684 TCAAAATGGATAAAAAGGGATGTATCT 57.286 29.630 0.00 0.00 0.00 1.98
2638 2955 9.486123 TCATCAAAATGGATAAAAAGGGATGTA 57.514 29.630 0.00 0.00 33.42 2.29
2639 2956 8.260114 GTCATCAAAATGGATAAAAAGGGATGT 58.740 33.333 0.00 0.00 33.42 3.06
2640 2957 8.259411 TGTCATCAAAATGGATAAAAAGGGATG 58.741 33.333 0.00 0.00 33.42 3.51
2641 2958 8.378115 TGTCATCAAAATGGATAAAAAGGGAT 57.622 30.769 0.00 0.00 33.42 3.85
2642 2959 7.789202 TGTCATCAAAATGGATAAAAAGGGA 57.211 32.000 0.00 0.00 33.42 4.20
2643 2960 7.877097 TGTTGTCATCAAAATGGATAAAAAGGG 59.123 33.333 0.00 0.00 35.20 3.95
2644 2961 8.830201 TGTTGTCATCAAAATGGATAAAAAGG 57.170 30.769 0.00 0.00 35.20 3.11
2646 2963 9.829507 ACTTGTTGTCATCAAAATGGATAAAAA 57.170 25.926 0.00 0.00 35.20 1.94
2652 2969 9.474920 GAAAATACTTGTTGTCATCAAAATGGA 57.525 29.630 0.00 0.00 35.20 3.41
2653 2970 8.427012 CGAAAATACTTGTTGTCATCAAAATGG 58.573 33.333 0.00 0.00 35.20 3.16
2654 2971 8.427012 CCGAAAATACTTGTTGTCATCAAAATG 58.573 33.333 0.00 0.00 35.20 2.32
2655 2972 8.356657 TCCGAAAATACTTGTTGTCATCAAAAT 58.643 29.630 0.00 0.00 35.20 1.82
2656 2973 7.646130 GTCCGAAAATACTTGTTGTCATCAAAA 59.354 33.333 0.00 0.00 35.20 2.44
2657 2974 7.136119 GTCCGAAAATACTTGTTGTCATCAAA 58.864 34.615 0.00 0.00 35.20 2.69
2658 2975 6.565060 CGTCCGAAAATACTTGTTGTCATCAA 60.565 38.462 0.00 0.00 0.00 2.57
2659 2976 5.107259 CGTCCGAAAATACTTGTTGTCATCA 60.107 40.000 0.00 0.00 0.00 3.07
2660 2977 5.313623 CGTCCGAAAATACTTGTTGTCATC 58.686 41.667 0.00 0.00 0.00 2.92
2661 2978 4.153475 CCGTCCGAAAATACTTGTTGTCAT 59.847 41.667 0.00 0.00 0.00 3.06
2662 2979 3.495377 CCGTCCGAAAATACTTGTTGTCA 59.505 43.478 0.00 0.00 0.00 3.58
2663 2980 3.742369 TCCGTCCGAAAATACTTGTTGTC 59.258 43.478 0.00 0.00 0.00 3.18
2664 2981 3.731089 TCCGTCCGAAAATACTTGTTGT 58.269 40.909 0.00 0.00 0.00 3.32
2665 2982 3.124636 CCTCCGTCCGAAAATACTTGTTG 59.875 47.826 0.00 0.00 0.00 3.33
2666 2983 3.332034 CCTCCGTCCGAAAATACTTGTT 58.668 45.455 0.00 0.00 0.00 2.83
2667 2984 2.354403 CCCTCCGTCCGAAAATACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
2668 2985 2.093869 TCCCTCCGTCCGAAAATACTTG 60.094 50.000 0.00 0.00 0.00 3.16
2669 2986 2.167900 CTCCCTCCGTCCGAAAATACTT 59.832 50.000 0.00 0.00 0.00 2.24
2670 2987 1.755380 CTCCCTCCGTCCGAAAATACT 59.245 52.381 0.00 0.00 0.00 2.12
2671 2988 1.479730 ACTCCCTCCGTCCGAAAATAC 59.520 52.381 0.00 0.00 0.00 1.89
2672 2989 1.856629 ACTCCCTCCGTCCGAAAATA 58.143 50.000 0.00 0.00 0.00 1.40
2673 2990 1.856629 TACTCCCTCCGTCCGAAAAT 58.143 50.000 0.00 0.00 0.00 1.82
2674 2991 1.273327 GTTACTCCCTCCGTCCGAAAA 59.727 52.381 0.00 0.00 0.00 2.29
2675 2992 0.890683 GTTACTCCCTCCGTCCGAAA 59.109 55.000 0.00 0.00 0.00 3.46
2676 2993 0.251297 TGTTACTCCCTCCGTCCGAA 60.251 55.000 0.00 0.00 0.00 4.30
2677 2994 0.033796 ATGTTACTCCCTCCGTCCGA 60.034 55.000 0.00 0.00 0.00 4.55
2678 2995 1.683943 TATGTTACTCCCTCCGTCCG 58.316 55.000 0.00 0.00 0.00 4.79
2679 2996 7.472334 TTTATATATGTTACTCCCTCCGTCC 57.528 40.000 0.00 0.00 0.00 4.79
2680 2997 7.034397 GCTTTATATATGTTACTCCCTCCGTC 58.966 42.308 0.00 0.00 0.00 4.79
2681 2998 6.070938 GGCTTTATATATGTTACTCCCTCCGT 60.071 42.308 0.00 0.00 0.00 4.69
2682 2999 6.154706 AGGCTTTATATATGTTACTCCCTCCG 59.845 42.308 0.00 0.00 0.00 4.63
2683 3000 7.497773 AGGCTTTATATATGTTACTCCCTCC 57.502 40.000 0.00 0.00 0.00 4.30
2684 3001 9.872721 GTAAGGCTTTATATATGTTACTCCCTC 57.127 37.037 4.45 0.00 0.00 4.30
2685 3002 8.823794 GGTAAGGCTTTATATATGTTACTCCCT 58.176 37.037 4.45 0.00 0.00 4.20
2686 3003 8.823794 AGGTAAGGCTTTATATATGTTACTCCC 58.176 37.037 4.45 0.00 0.00 4.30
2687 3004 9.872721 GAGGTAAGGCTTTATATATGTTACTCC 57.127 37.037 4.45 0.00 0.00 3.85
2688 3005 9.872721 GGAGGTAAGGCTTTATATATGTTACTC 57.127 37.037 4.45 0.00 0.00 2.59
2689 3006 9.388672 TGGAGGTAAGGCTTTATATATGTTACT 57.611 33.333 4.45 0.00 0.00 2.24
2690 3007 9.433153 GTGGAGGTAAGGCTTTATATATGTTAC 57.567 37.037 4.45 0.00 0.00 2.50
2691 3008 9.161572 TGTGGAGGTAAGGCTTTATATATGTTA 57.838 33.333 4.45 0.00 0.00 2.41
2692 3009 8.041143 TGTGGAGGTAAGGCTTTATATATGTT 57.959 34.615 4.45 0.00 0.00 2.71
2693 3010 7.292591 ACTGTGGAGGTAAGGCTTTATATATGT 59.707 37.037 4.45 0.00 0.00 2.29
2694 3011 7.680730 ACTGTGGAGGTAAGGCTTTATATATG 58.319 38.462 4.45 0.00 0.00 1.78
2695 3012 7.873699 ACTGTGGAGGTAAGGCTTTATATAT 57.126 36.000 4.45 0.00 0.00 0.86
2696 3013 7.685849 AACTGTGGAGGTAAGGCTTTATATA 57.314 36.000 4.45 0.00 0.00 0.86
2697 3014 6.576778 AACTGTGGAGGTAAGGCTTTATAT 57.423 37.500 4.45 0.00 0.00 0.86
2698 3015 7.685849 ATAACTGTGGAGGTAAGGCTTTATA 57.314 36.000 4.45 0.00 0.00 0.98
2699 3016 4.929146 AACTGTGGAGGTAAGGCTTTAT 57.071 40.909 4.45 0.00 0.00 1.40
2700 3017 6.670902 ACTATAACTGTGGAGGTAAGGCTTTA 59.329 38.462 4.45 0.00 0.00 1.85
2753 3070 9.367444 TCGTTTCCAGAGATAAAAGTATTCTTC 57.633 33.333 0.00 0.00 32.90 2.87
2759 3076 7.103641 AGCAATCGTTTCCAGAGATAAAAGTA 58.896 34.615 0.00 0.00 0.00 2.24
2770 3087 4.549458 ACAATGAAAGCAATCGTTTCCAG 58.451 39.130 0.00 0.00 33.67 3.86
2877 3196 2.317900 TGAACTCCTCTATCCCTTGGGA 59.682 50.000 11.22 11.22 0.00 4.37
3044 3363 8.589629 CAAAAACTTGTAATATGCATCAGAAGC 58.410 33.333 0.19 0.00 0.00 3.86
3316 3648 6.706295 TCTTGTTTGTTTCCACCAAAGATTT 58.294 32.000 0.00 0.00 32.79 2.17
3455 3796 6.261381 GGTGACATGTAACCACTGTTTTAGAA 59.739 38.462 25.49 0.00 34.05 2.10
3716 4066 4.399303 AGTGCACTAGTTCTGTTGCTTTTT 59.601 37.500 20.16 0.00 0.00 1.94
3732 4082 3.258372 TCTCAATAACCGAAGAGTGCACT 59.742 43.478 21.88 21.88 0.00 4.40
3795 4145 0.601311 AGTCTTGAACGCACAGGAGC 60.601 55.000 0.00 0.00 0.00 4.70
3882 4232 4.368543 GCAGGCTGCTTTGGTGCC 62.369 66.667 31.37 0.00 46.42 5.01
3910 4262 2.762745 TCCAGGTTCAAAGCTTCGTAC 58.237 47.619 0.00 0.00 33.87 3.67
4246 5685 6.373005 TTCAATCCACCTTTCTGTCTCATA 57.627 37.500 0.00 0.00 0.00 2.15
4310 7178 4.042174 CCACCCAACCCTAATCTTACCTA 58.958 47.826 0.00 0.00 0.00 3.08
4379 7255 2.335092 CTGGGCGATGGGATCTTGCT 62.335 60.000 0.00 0.00 0.00 3.91
4443 7326 0.107703 CGCTGGATCTGGTGCCTTTA 60.108 55.000 0.00 0.00 0.00 1.85
4506 7389 1.681327 GGTGGTGGTCGCTCCTCTA 60.681 63.158 0.00 0.00 37.07 2.43
4685 7575 1.519246 CTCCAGAAGGATGAGCGCA 59.481 57.895 11.47 0.00 44.70 6.09
4765 7655 2.047274 TTCGAAGCTTGAGGCCGG 60.047 61.111 2.10 0.00 43.05 6.13
4793 7683 3.069980 GCGGATGTGGAGCTCGAGT 62.070 63.158 15.13 0.23 0.00 4.18
4869 7759 1.248101 TGGATCGTTCTCGTGGCTCA 61.248 55.000 0.00 0.00 38.33 4.26
4901 7791 2.355716 CCTCTCTCTCTCTCCTTCACGT 60.356 54.545 0.00 0.00 0.00 4.49
4925 7815 2.628465 AGATCCCCTCCTCCCCCA 60.628 66.667 0.00 0.00 0.00 4.96
4931 7821 0.780637 TCTATCGCAGATCCCCTCCT 59.219 55.000 0.00 0.00 45.12 3.69
4962 7855 1.648467 GATCTGTGTTGCTTCCGCCC 61.648 60.000 0.00 0.00 34.43 6.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.