Multiple sequence alignment - TraesCS2B01G511600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G511600 chr2B 100.000 5415 0 0 1 5415 707418686 707413272 0.000000e+00 10000.0
1 TraesCS2B01G511600 chr2B 88.841 4167 389 50 478 4594 707674359 707670219 0.000000e+00 5049.0
2 TraesCS2B01G511600 chr2B 83.777 1689 250 19 2736 4411 707691700 707690023 0.000000e+00 1580.0
3 TraesCS2B01G511600 chr2B 83.698 1693 252 20 2736 4413 707632012 707630329 0.000000e+00 1576.0
4 TraesCS2B01G511600 chr2B 83.979 1342 184 21 3181 4505 707462958 707461631 0.000000e+00 1258.0
5 TraesCS2B01G511600 chr2B 79.376 1411 236 37 1238 2615 707633529 707632141 0.000000e+00 942.0
6 TraesCS2B01G511600 chr2B 78.915 1456 248 36 1238 2665 707465051 707463627 0.000000e+00 933.0
7 TraesCS2B01G511600 chr2B 78.361 1391 247 38 1238 2596 707693219 707691851 0.000000e+00 852.0
8 TraesCS2B01G511600 chr2B 90.428 491 37 9 1 489 707674940 707674458 5.920000e-179 638.0
9 TraesCS2B01G511600 chr2B 89.256 484 30 12 4952 5415 550485273 550485754 2.170000e-163 586.0
10 TraesCS2B01G511600 chr2D 95.645 3605 104 24 317 3878 585897260 585893666 0.000000e+00 5738.0
11 TraesCS2B01G511600 chr2D 86.449 3616 396 56 939 4534 586151263 586154804 0.000000e+00 3877.0
12 TraesCS2B01G511600 chr2D 83.865 1692 250 20 2736 4413 585915207 585916889 0.000000e+00 1591.0
13 TraesCS2B01G511600 chr2D 86.842 1102 89 23 3863 4952 585893650 585892593 0.000000e+00 1181.0
14 TraesCS2B01G511600 chr2D 83.896 1155 164 17 3219 4368 619331282 619332419 0.000000e+00 1083.0
15 TraesCS2B01G511600 chr2D 78.434 1456 256 35 1226 2665 585913697 585915110 0.000000e+00 896.0
16 TraesCS2B01G511600 chr2D 78.654 609 116 6 2002 2596 619328190 619328798 5.080000e-105 392.0
17 TraesCS2B01G511600 chr2D 86.076 158 14 4 4550 4700 586154925 586155081 4.340000e-36 163.0
18 TraesCS2B01G511600 chr2D 87.097 62 6 2 154 215 98706834 98706775 9.730000e-08 69.4
19 TraesCS2B01G511600 chr2D 79.048 105 15 6 107 208 35203167 35203267 1.260000e-06 65.8
20 TraesCS2B01G511600 chr2D 100.000 32 0 0 372 403 598239909 598239940 5.860000e-05 60.2
21 TraesCS2B01G511600 chr2A 91.236 3982 295 33 996 4960 720062893 720058949 0.000000e+00 5371.0
22 TraesCS2B01G511600 chr2A 83.513 1674 241 26 2764 4416 721032075 721030416 0.000000e+00 1530.0
23 TraesCS2B01G511600 chr2A 79.616 1251 222 24 1238 2472 720521404 720520171 0.000000e+00 867.0
24 TraesCS2B01G511600 chr5B 91.195 477 21 5 4959 5415 545152368 545151893 3.560000e-176 628.0
25 TraesCS2B01G511600 chr5B 87.076 472 40 14 4956 5415 403752176 403752638 1.040000e-141 514.0
26 TraesCS2B01G511600 chr5B 93.976 249 12 3 4953 5198 545130930 545131178 1.840000e-99 374.0
27 TraesCS2B01G511600 chr4B 90.851 470 21 13 4956 5415 67034713 67034256 1.290000e-170 610.0
28 TraesCS2B01G511600 chr4B 90.889 461 28 10 4956 5415 66999587 66999140 1.670000e-169 606.0
29 TraesCS2B01G511600 chr4B 89.597 471 25 12 4956 5415 66972719 66972262 1.310000e-160 577.0
30 TraesCS2B01G511600 chr4B 89.172 471 27 12 4956 5415 66928043 66927586 2.830000e-157 566.0
31 TraesCS2B01G511600 chr4B 88.747 471 28 6 4956 5415 66898648 66898192 2.200000e-153 553.0
32 TraesCS2B01G511600 chr4B 88.323 471 30 12 4956 5415 66868087 66867631 4.770000e-150 542.0
33 TraesCS2B01G511600 chr4B 85.535 477 41 14 4956 5415 630535263 630534798 1.770000e-129 473.0
34 TraesCS2B01G511600 chr4B 93.522 247 13 2 4953 5198 67009826 67010070 1.110000e-96 364.0
35 TraesCS2B01G511600 chr7B 93.878 245 11 4 4954 5195 372045639 372045396 3.080000e-97 366.0
36 TraesCS2B01G511600 chr7B 93.776 241 13 2 4956 5195 51052714 51052953 1.430000e-95 361.0
37 TraesCS2B01G511600 chr7B 78.723 470 88 9 2999 3465 654917798 654918258 2.450000e-78 303.0
38 TraesCS2B01G511600 chr6B 82.105 475 33 20 4962 5415 157866332 157865889 5.160000e-95 359.0
39 TraesCS2B01G511600 chr6A 91.667 48 3 1 146 193 105011921 105011875 1.260000e-06 65.8
40 TraesCS2B01G511600 chr6D 84.615 65 6 3 150 212 457134777 457134715 1.630000e-05 62.1
41 TraesCS2B01G511600 chr3D 94.872 39 2 0 136 174 594360767 594360805 1.630000e-05 62.1
42 TraesCS2B01G511600 chr3B 81.013 79 11 4 137 215 789060632 789060706 5.860000e-05 60.2
43 TraesCS2B01G511600 chr3A 84.127 63 8 2 147 207 393964945 393964883 5.860000e-05 60.2
44 TraesCS2B01G511600 chr4D 90.476 42 4 0 147 188 297107475 297107434 7.580000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G511600 chr2B 707413272 707418686 5414 True 10000.0 10000 100.0000 1 5415 1 chr2B.!!$R1 5414
1 TraesCS2B01G511600 chr2B 707670219 707674940 4721 True 2843.5 5049 89.6345 1 4594 2 chr2B.!!$R4 4593
2 TraesCS2B01G511600 chr2B 707630329 707633529 3200 True 1259.0 1576 81.5370 1238 4413 2 chr2B.!!$R3 3175
3 TraesCS2B01G511600 chr2B 707690023 707693219 3196 True 1216.0 1580 81.0690 1238 4411 2 chr2B.!!$R5 3173
4 TraesCS2B01G511600 chr2B 707461631 707465051 3420 True 1095.5 1258 81.4470 1238 4505 2 chr2B.!!$R2 3267
5 TraesCS2B01G511600 chr2D 585892593 585897260 4667 True 3459.5 5738 91.2435 317 4952 2 chr2D.!!$R2 4635
6 TraesCS2B01G511600 chr2D 586151263 586155081 3818 False 2020.0 3877 86.2625 939 4700 2 chr2D.!!$F4 3761
7 TraesCS2B01G511600 chr2D 585913697 585916889 3192 False 1243.5 1591 81.1495 1226 4413 2 chr2D.!!$F3 3187
8 TraesCS2B01G511600 chr2D 619328190 619332419 4229 False 737.5 1083 81.2750 2002 4368 2 chr2D.!!$F5 2366
9 TraesCS2B01G511600 chr2A 720058949 720062893 3944 True 5371.0 5371 91.2360 996 4960 1 chr2A.!!$R1 3964
10 TraesCS2B01G511600 chr2A 721030416 721032075 1659 True 1530.0 1530 83.5130 2764 4416 1 chr2A.!!$R3 1652
11 TraesCS2B01G511600 chr2A 720520171 720521404 1233 True 867.0 867 79.6160 1238 2472 1 chr2A.!!$R2 1234

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
451 466 0.251341 AAAAATCCGGACCAGCAGCT 60.251 50.000 6.12 0.00 0.00 4.24 F
1155 1315 1.134610 CCAATTCCATTTCTGCAGCCC 60.135 52.381 9.47 0.00 0.00 5.19 F
1969 2168 1.082117 GGGCTCACCGTATTCACGTG 61.082 60.000 9.94 9.94 46.96 4.49 F
2842 3176 1.482182 TGTTGATACTCGCATGCCTCT 59.518 47.619 13.15 0.00 0.00 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1503 1689 0.319900 CAGACAACACCAGGTCGGAG 60.320 60.000 0.00 0.0 39.01 4.63 R
2433 2653 0.901827 TGGCAAGCCGAAGATACAGA 59.098 50.000 6.60 0.0 39.42 3.41 R
2953 3293 6.377996 TCCATTGTGGATTCCATACTTCTTTG 59.622 38.462 9.01 0.0 42.67 2.77 R
4648 7093 1.869767 GCAAGAGAGGCATTACCATCG 59.130 52.381 0.00 0.0 43.14 3.84 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
195 197 7.755373 TGTTCACGATTTCACAACAATGTTTAA 59.245 29.630 0.00 0.00 37.82 1.52
196 198 8.587950 GTTCACGATTTCACAACAATGTTTAAA 58.412 29.630 0.00 0.00 37.82 1.52
417 432 4.934356 AGGATCCCAATAGAAAAGCAACA 58.066 39.130 8.55 0.00 0.00 3.33
451 466 0.251341 AAAAATCCGGACCAGCAGCT 60.251 50.000 6.12 0.00 0.00 4.24
795 923 4.717629 TCGGTCTCGGTGCTTGCG 62.718 66.667 0.00 0.00 36.95 4.85
954 1093 4.681978 GTCCACGGCAAGCGTCCT 62.682 66.667 0.00 0.00 0.00 3.85
955 1094 3.936203 TCCACGGCAAGCGTCCTT 61.936 61.111 0.00 0.00 0.00 3.36
956 1095 2.047655 CCACGGCAAGCGTCCTTA 60.048 61.111 0.00 0.00 0.00 2.69
1030 1171 1.764851 CCATTTTTCTTTGCGCGTGA 58.235 45.000 8.43 0.00 0.00 4.35
1135 1292 6.204301 GGTTGTCCAGTTTCTAGTTTACCTTC 59.796 42.308 0.00 0.00 0.00 3.46
1136 1293 5.861727 TGTCCAGTTTCTAGTTTACCTTCC 58.138 41.667 0.00 0.00 0.00 3.46
1137 1294 5.367352 TGTCCAGTTTCTAGTTTACCTTCCA 59.633 40.000 0.00 0.00 0.00 3.53
1138 1295 6.126710 TGTCCAGTTTCTAGTTTACCTTCCAA 60.127 38.462 0.00 0.00 0.00 3.53
1139 1296 6.940867 GTCCAGTTTCTAGTTTACCTTCCAAT 59.059 38.462 0.00 0.00 0.00 3.16
1140 1297 7.447545 GTCCAGTTTCTAGTTTACCTTCCAATT 59.552 37.037 0.00 0.00 0.00 2.32
1145 1302 8.803235 GTTTCTAGTTTACCTTCCAATTCCATT 58.197 33.333 0.00 0.00 0.00 3.16
1155 1315 1.134610 CCAATTCCATTTCTGCAGCCC 60.135 52.381 9.47 0.00 0.00 5.19
1503 1689 1.210155 GCTCGCCATCACCAACAAC 59.790 57.895 0.00 0.00 0.00 3.32
1737 1926 2.684881 CAGACGCCTAATTGCTTGGAAT 59.315 45.455 0.00 0.00 0.00 3.01
1910 2106 4.659111 TCTTCACCGAAGTTGTTACTGA 57.341 40.909 3.81 0.00 40.24 3.41
1969 2168 1.082117 GGGCTCACCGTATTCACGTG 61.082 60.000 9.94 9.94 46.96 4.49
2433 2653 6.924060 GGAAGTATAGCAACTATGACGACAAT 59.076 38.462 0.00 0.00 0.00 2.71
2456 2676 2.084546 GTATCTTCGGCTTGCCAACTT 58.915 47.619 12.45 0.00 0.00 2.66
2538 2786 6.567687 ATCAACACCAACATTTAATCGTGA 57.432 33.333 0.00 0.00 0.00 4.35
2672 3001 3.972403 GCATAATGCAACATGCTCATGA 58.028 40.909 22.14 0.00 45.31 3.07
2842 3176 1.482182 TGTTGATACTCGCATGCCTCT 59.518 47.619 13.15 0.00 0.00 3.69
2903 3238 3.663025 CCCCTCGTTTTCAAAATTGCAT 58.337 40.909 0.00 0.00 0.00 3.96
2953 3293 6.620678 TGTATTGATCTTTAGCAAGCAAACC 58.379 36.000 0.00 0.00 33.84 3.27
3406 5668 4.018506 TGCTGTATTTTTGGGGATGAGAGA 60.019 41.667 0.00 0.00 0.00 3.10
4152 6452 1.259609 TGGGCAGATGGAAAAGCAAG 58.740 50.000 0.00 0.00 0.00 4.01
4181 6481 3.304928 GGTGCACTCTTCATTTGTTGAGG 60.305 47.826 17.98 0.00 35.27 3.86
4220 6520 5.464030 AGTTGTACGGTGTATTCAAGTCT 57.536 39.130 0.00 0.00 0.00 3.24
4369 6680 4.569943 TCGAAAGTGAAGAATCAAGGGAG 58.430 43.478 0.00 0.00 37.30 4.30
4413 6733 4.379243 AGCAGTCGAGGGGCGTTG 62.379 66.667 0.00 0.00 41.80 4.10
4507 6835 1.803334 TCGGTAGGTCATTGTGTTGC 58.197 50.000 0.00 0.00 0.00 4.17
4648 7093 1.839296 CCCGAGATCCCTCCTTCCC 60.839 68.421 0.00 0.00 36.04 3.97
4774 7234 9.733556 TGGTACTTTTATCTCTTCTGCATTTAA 57.266 29.630 0.00 0.00 0.00 1.52
4775 7235 9.989869 GGTACTTTTATCTCTTCTGCATTTAAC 57.010 33.333 0.00 0.00 0.00 2.01
4778 7238 9.507329 ACTTTTATCTCTTCTGCATTTAACTCA 57.493 29.630 0.00 0.00 0.00 3.41
4781 7241 9.671279 TTTATCTCTTCTGCATTTAACTCATGA 57.329 29.630 0.00 0.00 0.00 3.07
4782 7242 9.671279 TTATCTCTTCTGCATTTAACTCATGAA 57.329 29.630 0.00 0.00 0.00 2.57
4783 7243 7.369803 TCTCTTCTGCATTTAACTCATGAAC 57.630 36.000 0.00 0.00 0.00 3.18
4784 7244 6.936335 TCTCTTCTGCATTTAACTCATGAACA 59.064 34.615 0.00 0.00 0.00 3.18
4785 7245 7.609146 TCTCTTCTGCATTTAACTCATGAACAT 59.391 33.333 0.00 0.00 0.00 2.71
4786 7246 8.114331 TCTTCTGCATTTAACTCATGAACATT 57.886 30.769 0.00 0.00 0.00 2.71
4787 7247 8.579006 TCTTCTGCATTTAACTCATGAACATTT 58.421 29.630 0.00 0.00 0.00 2.32
4788 7248 9.844790 CTTCTGCATTTAACTCATGAACATTTA 57.155 29.630 0.00 0.00 0.00 1.40
4863 7323 5.565455 TCATATATGGTGTGGCATGAAGA 57.435 39.130 12.78 0.00 0.00 2.87
4866 7326 7.688343 TCATATATGGTGTGGCATGAAGATTA 58.312 34.615 12.78 0.00 0.00 1.75
4874 7334 6.311200 GGTGTGGCATGAAGATTATTTTGAAC 59.689 38.462 0.00 0.00 0.00 3.18
4947 7408 4.478317 TCCTTGGAACATTCTGGGTCATAT 59.522 41.667 0.00 0.00 39.30 1.78
4955 7416 7.974501 GGAACATTCTGGGTCATATATACTACG 59.025 40.741 0.00 0.00 0.00 3.51
4956 7417 8.645814 AACATTCTGGGTCATATATACTACGA 57.354 34.615 0.00 0.00 0.00 3.43
4957 7418 8.282455 ACATTCTGGGTCATATATACTACGAG 57.718 38.462 0.00 0.00 0.00 4.18
4958 7419 7.889073 ACATTCTGGGTCATATATACTACGAGT 59.111 37.037 0.00 0.00 0.00 4.18
4959 7420 9.392259 CATTCTGGGTCATATATACTACGAGTA 57.608 37.037 0.00 0.00 34.82 2.59
4960 7421 9.970553 ATTCTGGGTCATATATACTACGAGTAA 57.029 33.333 0.00 0.00 33.89 2.24
4961 7422 9.797642 TTCTGGGTCATATATACTACGAGTAAA 57.202 33.333 0.00 0.00 33.89 2.01
4962 7423 9.970553 TCTGGGTCATATATACTACGAGTAAAT 57.029 33.333 0.00 0.00 33.89 1.40
4965 7426 9.298774 GGGTCATATATACTACGAGTAAATTGC 57.701 37.037 0.00 0.00 33.89 3.56
4966 7427 9.850628 GGTCATATATACTACGAGTAAATTGCA 57.149 33.333 0.00 0.00 33.89 4.08
4973 7434 6.237313 ACTACGAGTAAATTGCAGAAAACC 57.763 37.500 0.00 0.00 0.00 3.27
4974 7435 5.761234 ACTACGAGTAAATTGCAGAAAACCA 59.239 36.000 0.00 0.00 0.00 3.67
4975 7436 4.855531 ACGAGTAAATTGCAGAAAACCAC 58.144 39.130 0.00 0.00 0.00 4.16
4976 7437 4.226761 CGAGTAAATTGCAGAAAACCACC 58.773 43.478 0.00 0.00 0.00 4.61
4977 7438 4.261405 CGAGTAAATTGCAGAAAACCACCA 60.261 41.667 0.00 0.00 0.00 4.17
4978 7439 4.944048 AGTAAATTGCAGAAAACCACCAC 58.056 39.130 0.00 0.00 0.00 4.16
4979 7440 4.649218 AGTAAATTGCAGAAAACCACCACT 59.351 37.500 0.00 0.00 0.00 4.00
4980 7441 4.486125 AAATTGCAGAAAACCACCACTT 57.514 36.364 0.00 0.00 0.00 3.16
4981 7442 4.486125 AATTGCAGAAAACCACCACTTT 57.514 36.364 0.00 0.00 0.00 2.66
4982 7443 5.606348 AATTGCAGAAAACCACCACTTTA 57.394 34.783 0.00 0.00 0.00 1.85
4983 7444 5.606348 ATTGCAGAAAACCACCACTTTAA 57.394 34.783 0.00 0.00 0.00 1.52
4984 7445 5.407407 TTGCAGAAAACCACCACTTTAAA 57.593 34.783 0.00 0.00 0.00 1.52
4985 7446 5.004922 TGCAGAAAACCACCACTTTAAAG 57.995 39.130 13.76 13.76 0.00 1.85
4986 7447 4.142049 TGCAGAAAACCACCACTTTAAAGG 60.142 41.667 19.14 6.08 0.00 3.11
4987 7448 4.368315 CAGAAAACCACCACTTTAAAGGC 58.632 43.478 19.14 0.00 0.00 4.35
4988 7449 4.027437 AGAAAACCACCACTTTAAAGGCA 58.973 39.130 19.14 0.00 0.00 4.75
4989 7450 4.468153 AGAAAACCACCACTTTAAAGGCAA 59.532 37.500 19.14 0.00 0.00 4.52
4990 7451 4.400529 AAACCACCACTTTAAAGGCAAG 57.599 40.909 19.14 7.22 0.00 4.01
4991 7452 1.686587 ACCACCACTTTAAAGGCAAGC 59.313 47.619 19.14 0.00 0.00 4.01
4992 7453 1.963515 CCACCACTTTAAAGGCAAGCT 59.036 47.619 19.14 0.00 0.00 3.74
4993 7454 2.029918 CCACCACTTTAAAGGCAAGCTC 60.030 50.000 19.14 0.00 0.00 4.09
4994 7455 2.887152 CACCACTTTAAAGGCAAGCTCT 59.113 45.455 19.14 0.00 0.00 4.09
4995 7456 2.887152 ACCACTTTAAAGGCAAGCTCTG 59.113 45.455 19.14 5.80 0.00 3.35
5003 7464 4.541020 GCAAGCTCTGCGAAAACC 57.459 55.556 5.35 0.00 42.37 3.27
5004 7465 1.654220 GCAAGCTCTGCGAAAACCA 59.346 52.632 5.35 0.00 42.37 3.67
5005 7466 0.661483 GCAAGCTCTGCGAAAACCAC 60.661 55.000 5.35 0.00 42.37 4.16
5006 7467 0.947244 CAAGCTCTGCGAAAACCACT 59.053 50.000 0.00 0.00 0.00 4.00
5007 7468 2.143122 CAAGCTCTGCGAAAACCACTA 58.857 47.619 0.00 0.00 0.00 2.74
5008 7469 1.797025 AGCTCTGCGAAAACCACTAC 58.203 50.000 0.00 0.00 0.00 2.73
5009 7470 1.070134 AGCTCTGCGAAAACCACTACA 59.930 47.619 0.00 0.00 0.00 2.74
5010 7471 1.871039 GCTCTGCGAAAACCACTACAA 59.129 47.619 0.00 0.00 0.00 2.41
5011 7472 2.484264 GCTCTGCGAAAACCACTACAAT 59.516 45.455 0.00 0.00 0.00 2.71
5012 7473 3.682858 GCTCTGCGAAAACCACTACAATA 59.317 43.478 0.00 0.00 0.00 1.90
5013 7474 4.435651 GCTCTGCGAAAACCACTACAATAC 60.436 45.833 0.00 0.00 0.00 1.89
5014 7475 4.633175 TCTGCGAAAACCACTACAATACA 58.367 39.130 0.00 0.00 0.00 2.29
5015 7476 5.242434 TCTGCGAAAACCACTACAATACAT 58.758 37.500 0.00 0.00 0.00 2.29
5016 7477 5.703592 TCTGCGAAAACCACTACAATACATT 59.296 36.000 0.00 0.00 0.00 2.71
5017 7478 6.205853 TCTGCGAAAACCACTACAATACATTT 59.794 34.615 0.00 0.00 0.00 2.32
5018 7479 6.740110 TGCGAAAACCACTACAATACATTTT 58.260 32.000 0.00 0.00 0.00 1.82
5019 7480 7.203910 TGCGAAAACCACTACAATACATTTTT 58.796 30.769 0.00 0.00 0.00 1.94
5042 7503 6.654793 TTTTTGCAAAAACACCATGTCTAC 57.345 33.333 28.85 0.00 33.29 2.59
5043 7504 3.617540 TGCAAAAACACCATGTCTACG 57.382 42.857 0.00 0.00 0.00 3.51
5044 7505 2.292016 TGCAAAAACACCATGTCTACGG 59.708 45.455 0.00 0.00 0.00 4.02
5045 7506 2.292292 GCAAAAACACCATGTCTACGGT 59.708 45.455 0.00 0.00 35.27 4.83
5046 7507 3.499157 GCAAAAACACCATGTCTACGGTA 59.501 43.478 0.00 0.00 32.98 4.02
5047 7508 4.023878 GCAAAAACACCATGTCTACGGTAA 60.024 41.667 0.00 0.00 32.98 2.85
5048 7509 5.335348 GCAAAAACACCATGTCTACGGTAAT 60.335 40.000 0.00 0.00 32.98 1.89
5049 7510 6.311723 CAAAAACACCATGTCTACGGTAATC 58.688 40.000 0.00 0.00 32.98 1.75
5050 7511 5.416271 AAACACCATGTCTACGGTAATCT 57.584 39.130 0.00 0.00 32.98 2.40
5051 7512 5.416271 AACACCATGTCTACGGTAATCTT 57.584 39.130 0.00 0.00 32.98 2.40
5052 7513 5.416271 ACACCATGTCTACGGTAATCTTT 57.584 39.130 0.00 0.00 32.98 2.52
5053 7514 5.801380 ACACCATGTCTACGGTAATCTTTT 58.199 37.500 0.00 0.00 32.98 2.27
5054 7515 6.235664 ACACCATGTCTACGGTAATCTTTTT 58.764 36.000 0.00 0.00 32.98 1.94
5055 7516 6.148811 ACACCATGTCTACGGTAATCTTTTTG 59.851 38.462 0.00 0.00 32.98 2.44
5056 7517 5.123344 ACCATGTCTACGGTAATCTTTTTGC 59.877 40.000 0.00 0.00 32.31 3.68
5057 7518 5.123186 CCATGTCTACGGTAATCTTTTTGCA 59.877 40.000 0.00 0.00 0.00 4.08
5058 7519 5.856126 TGTCTACGGTAATCTTTTTGCAG 57.144 39.130 0.00 0.00 0.00 4.41
5059 7520 5.543714 TGTCTACGGTAATCTTTTTGCAGA 58.456 37.500 0.00 0.00 0.00 4.26
5060 7521 5.992829 TGTCTACGGTAATCTTTTTGCAGAA 59.007 36.000 0.00 0.00 0.00 3.02
5061 7522 6.483974 TGTCTACGGTAATCTTTTTGCAGAAA 59.516 34.615 2.07 2.07 0.00 2.52
5062 7523 7.015877 GTCTACGGTAATCTTTTTGCAGAAAG 58.984 38.462 20.73 20.73 37.85 2.62
5063 7524 4.546570 ACGGTAATCTTTTTGCAGAAAGC 58.453 39.130 21.68 9.88 45.96 3.51
5073 7534 1.427020 GCAGAAAGCACTGATCGGC 59.573 57.895 0.00 0.00 44.79 5.54
5074 7535 1.712081 CAGAAAGCACTGATCGGCG 59.288 57.895 0.00 0.00 39.94 6.46
5075 7536 1.448540 AGAAAGCACTGATCGGCGG 60.449 57.895 7.21 0.00 34.54 6.13
5076 7537 1.447838 GAAAGCACTGATCGGCGGA 60.448 57.895 7.21 0.00 34.54 5.54
5077 7538 0.811616 GAAAGCACTGATCGGCGGAT 60.812 55.000 7.21 6.45 34.96 4.18
5084 7545 4.726351 GATCGGCGGATCGGGCTC 62.726 72.222 21.82 11.67 39.72 4.70
5088 7549 4.162690 GGCGGATCGGGCTCAGTT 62.163 66.667 18.13 0.00 0.00 3.16
5089 7550 2.792947 GGCGGATCGGGCTCAGTTA 61.793 63.158 18.13 0.00 0.00 2.24
5090 7551 1.143183 GCGGATCGGGCTCAGTTAA 59.857 57.895 2.13 0.00 0.00 2.01
5091 7552 0.876342 GCGGATCGGGCTCAGTTAAG 60.876 60.000 2.13 0.00 0.00 1.85
5092 7553 0.876342 CGGATCGGGCTCAGTTAAGC 60.876 60.000 0.00 0.00 41.73 3.09
5093 7554 0.466124 GGATCGGGCTCAGTTAAGCT 59.534 55.000 0.00 0.00 42.13 3.74
5094 7555 1.134371 GGATCGGGCTCAGTTAAGCTT 60.134 52.381 3.48 3.48 42.13 3.74
5095 7556 1.936547 GATCGGGCTCAGTTAAGCTTG 59.063 52.381 9.86 0.00 42.13 4.01
5096 7557 0.685097 TCGGGCTCAGTTAAGCTTGT 59.315 50.000 9.86 0.00 42.13 3.16
5097 7558 1.071699 TCGGGCTCAGTTAAGCTTGTT 59.928 47.619 9.86 0.00 42.13 2.83
5098 7559 1.880027 CGGGCTCAGTTAAGCTTGTTT 59.120 47.619 9.86 0.00 42.13 2.83
5099 7560 3.071479 CGGGCTCAGTTAAGCTTGTTTA 58.929 45.455 9.86 0.00 42.13 2.01
5100 7561 3.689649 CGGGCTCAGTTAAGCTTGTTTAT 59.310 43.478 9.86 0.00 42.13 1.40
5101 7562 4.437390 CGGGCTCAGTTAAGCTTGTTTATG 60.437 45.833 9.86 1.05 42.13 1.90
5102 7563 4.700213 GGGCTCAGTTAAGCTTGTTTATGA 59.300 41.667 9.86 5.47 42.13 2.15
5103 7564 5.392057 GGGCTCAGTTAAGCTTGTTTATGAC 60.392 44.000 9.86 0.00 42.13 3.06
5104 7565 5.181245 GGCTCAGTTAAGCTTGTTTATGACA 59.819 40.000 9.86 0.00 42.13 3.58
5105 7566 6.310197 GCTCAGTTAAGCTTGTTTATGACAG 58.690 40.000 9.86 0.00 39.27 3.51
5106 7567 6.621596 GCTCAGTTAAGCTTGTTTATGACAGG 60.622 42.308 9.86 0.00 39.27 4.00
5111 7572 1.094785 CTTGTTTATGACAGGCGGGG 58.905 55.000 0.00 0.00 39.94 5.73
5112 7573 0.963355 TTGTTTATGACAGGCGGGGC 60.963 55.000 0.00 0.00 39.94 5.80
5135 7596 1.355916 TTTTTGCGTACGTGGCACC 59.644 52.632 17.90 0.00 40.71 5.01
5136 7597 2.376231 TTTTTGCGTACGTGGCACCG 62.376 55.000 17.90 11.17 40.71 4.94
5137 7598 4.588854 TTGCGTACGTGGCACCGT 62.589 61.111 17.90 15.21 40.71 4.83
5158 7619 3.751246 CCGTCCCGACAGCCGTTA 61.751 66.667 0.00 0.00 36.31 3.18
5159 7620 2.505557 CGTCCCGACAGCCGTTAC 60.506 66.667 0.00 0.00 36.31 2.50
5160 7621 2.652530 GTCCCGACAGCCGTTACA 59.347 61.111 0.00 0.00 36.31 2.41
5161 7622 1.735559 GTCCCGACAGCCGTTACAC 60.736 63.158 0.00 0.00 36.31 2.90
5162 7623 2.807895 CCCGACAGCCGTTACACG 60.808 66.667 0.00 0.00 42.11 4.49
5171 7632 4.784128 CGTTACACGGCGTTTGAC 57.216 55.556 11.19 10.83 38.08 3.18
5179 7640 3.361977 GGCGTTTGACGGTGCCAT 61.362 61.111 2.48 0.00 46.76 4.40
5180 7641 2.175811 GCGTTTGACGGTGCCATC 59.824 61.111 2.48 0.00 42.82 3.51
5181 7642 2.867472 CGTTTGACGGTGCCATCC 59.133 61.111 0.00 0.00 38.08 3.51
5182 7643 2.686816 CGTTTGACGGTGCCATCCC 61.687 63.158 0.00 0.00 38.08 3.85
5183 7644 2.034999 TTTGACGGTGCCATCCCC 59.965 61.111 0.00 0.00 0.00 4.81
5184 7645 3.577334 TTTGACGGTGCCATCCCCC 62.577 63.158 0.00 0.00 0.00 5.40
5186 7647 4.176752 GACGGTGCCATCCCCCTC 62.177 72.222 0.00 0.00 0.00 4.30
5189 7650 4.129148 GGTGCCATCCCCCTCCAC 62.129 72.222 0.00 0.00 0.00 4.02
5190 7651 4.129148 GTGCCATCCCCCTCCACC 62.129 72.222 0.00 0.00 0.00 4.61
5208 7669 3.979497 CCCCCTGAAAAGGCCGGT 61.979 66.667 1.90 0.00 0.00 5.28
5209 7670 2.361230 CCCCTGAAAAGGCCGGTC 60.361 66.667 0.00 0.00 0.00 4.79
5210 7671 2.746277 CCCTGAAAAGGCCGGTCG 60.746 66.667 1.90 0.00 0.00 4.79
5211 7672 3.431725 CCTGAAAAGGCCGGTCGC 61.432 66.667 1.90 0.00 0.00 5.19
5212 7673 2.358737 CTGAAAAGGCCGGTCGCT 60.359 61.111 1.90 0.00 37.74 4.93
5213 7674 2.668212 TGAAAAGGCCGGTCGCTG 60.668 61.111 1.90 0.00 37.74 5.18
5214 7675 4.103103 GAAAAGGCCGGTCGCTGC 62.103 66.667 1.90 0.00 37.74 5.25
5227 7688 3.798511 GCTGCCCCCACTCCCTAC 61.799 72.222 0.00 0.00 0.00 3.18
5228 7689 2.041265 CTGCCCCCACTCCCTACT 59.959 66.667 0.00 0.00 0.00 2.57
5229 7690 2.040606 TGCCCCCACTCCCTACTC 59.959 66.667 0.00 0.00 0.00 2.59
5230 7691 2.369001 GCCCCCACTCCCTACTCT 59.631 66.667 0.00 0.00 0.00 3.24
5231 7692 2.066999 GCCCCCACTCCCTACTCTG 61.067 68.421 0.00 0.00 0.00 3.35
5232 7693 1.392534 CCCCCACTCCCTACTCTGT 59.607 63.158 0.00 0.00 0.00 3.41
5233 7694 0.688087 CCCCCACTCCCTACTCTGTC 60.688 65.000 0.00 0.00 0.00 3.51
5234 7695 0.336737 CCCCACTCCCTACTCTGTCT 59.663 60.000 0.00 0.00 0.00 3.41
5235 7696 1.686741 CCCCACTCCCTACTCTGTCTC 60.687 61.905 0.00 0.00 0.00 3.36
5236 7697 1.384525 CCACTCCCTACTCTGTCTCG 58.615 60.000 0.00 0.00 0.00 4.04
5237 7698 0.736053 CACTCCCTACTCTGTCTCGC 59.264 60.000 0.00 0.00 0.00 5.03
5238 7699 0.621609 ACTCCCTACTCTGTCTCGCT 59.378 55.000 0.00 0.00 0.00 4.93
5239 7700 1.021202 CTCCCTACTCTGTCTCGCTG 58.979 60.000 0.00 0.00 0.00 5.18
5240 7701 1.032657 TCCCTACTCTGTCTCGCTGC 61.033 60.000 0.00 0.00 0.00 5.25
5241 7702 1.034838 CCCTACTCTGTCTCGCTGCT 61.035 60.000 0.00 0.00 0.00 4.24
5242 7703 0.380378 CCTACTCTGTCTCGCTGCTC 59.620 60.000 0.00 0.00 0.00 4.26
5243 7704 1.378531 CTACTCTGTCTCGCTGCTCT 58.621 55.000 0.00 0.00 0.00 4.09
5244 7705 1.330521 CTACTCTGTCTCGCTGCTCTC 59.669 57.143 0.00 0.00 0.00 3.20
5245 7706 1.312371 ACTCTGTCTCGCTGCTCTCC 61.312 60.000 0.00 0.00 0.00 3.71
5246 7707 1.001517 TCTGTCTCGCTGCTCTCCT 60.002 57.895 0.00 0.00 0.00 3.69
5247 7708 1.029408 TCTGTCTCGCTGCTCTCCTC 61.029 60.000 0.00 0.00 0.00 3.71
5248 7709 1.001517 TGTCTCGCTGCTCTCCTCT 60.002 57.895 0.00 0.00 0.00 3.69
5249 7710 1.029408 TGTCTCGCTGCTCTCCTCTC 61.029 60.000 0.00 0.00 0.00 3.20
5250 7711 1.817520 TCTCGCTGCTCTCCTCTCG 60.818 63.158 0.00 0.00 0.00 4.04
5251 7712 3.468266 CTCGCTGCTCTCCTCTCGC 62.468 68.421 0.00 0.00 0.00 5.03
5252 7713 3.517140 CGCTGCTCTCCTCTCGCT 61.517 66.667 0.00 0.00 0.00 4.93
5253 7714 2.412937 GCTGCTCTCCTCTCGCTC 59.587 66.667 0.00 0.00 0.00 5.03
5254 7715 2.413963 GCTGCTCTCCTCTCGCTCA 61.414 63.158 0.00 0.00 0.00 4.26
5255 7716 1.433064 CTGCTCTCCTCTCGCTCAC 59.567 63.158 0.00 0.00 0.00 3.51
5256 7717 1.001517 TGCTCTCCTCTCGCTCACT 60.002 57.895 0.00 0.00 0.00 3.41
5257 7718 1.029408 TGCTCTCCTCTCGCTCACTC 61.029 60.000 0.00 0.00 0.00 3.51
5258 7719 1.724582 GCTCTCCTCTCGCTCACTCC 61.725 65.000 0.00 0.00 0.00 3.85
5259 7720 0.107214 CTCTCCTCTCGCTCACTCCT 60.107 60.000 0.00 0.00 0.00 3.69
5260 7721 0.107410 TCTCCTCTCGCTCACTCCTC 60.107 60.000 0.00 0.00 0.00 3.71
5261 7722 1.077357 TCCTCTCGCTCACTCCTCC 60.077 63.158 0.00 0.00 0.00 4.30
5262 7723 1.077068 CCTCTCGCTCACTCCTCCT 60.077 63.158 0.00 0.00 0.00 3.69
5263 7724 1.101049 CCTCTCGCTCACTCCTCCTC 61.101 65.000 0.00 0.00 0.00 3.71
5264 7725 1.077357 TCTCGCTCACTCCTCCTCC 60.077 63.158 0.00 0.00 0.00 4.30
5265 7726 2.043852 TCGCTCACTCCTCCTCCC 60.044 66.667 0.00 0.00 0.00 4.30
5266 7727 2.363018 CGCTCACTCCTCCTCCCA 60.363 66.667 0.00 0.00 0.00 4.37
5267 7728 1.760086 CGCTCACTCCTCCTCCCAT 60.760 63.158 0.00 0.00 0.00 4.00
5268 7729 1.828768 GCTCACTCCTCCTCCCATG 59.171 63.158 0.00 0.00 0.00 3.66
5269 7730 0.980231 GCTCACTCCTCCTCCCATGT 60.980 60.000 0.00 0.00 0.00 3.21
5270 7731 1.118838 CTCACTCCTCCTCCCATGTC 58.881 60.000 0.00 0.00 0.00 3.06
5271 7732 0.712979 TCACTCCTCCTCCCATGTCT 59.287 55.000 0.00 0.00 0.00 3.41
5272 7733 1.079490 TCACTCCTCCTCCCATGTCTT 59.921 52.381 0.00 0.00 0.00 3.01
5273 7734 1.209019 CACTCCTCCTCCCATGTCTTG 59.791 57.143 0.00 0.00 0.00 3.02
5274 7735 0.179936 CTCCTCCTCCCATGTCTTGC 59.820 60.000 0.00 0.00 0.00 4.01
5275 7736 0.252881 TCCTCCTCCCATGTCTTGCT 60.253 55.000 0.00 0.00 0.00 3.91
5276 7737 0.179936 CCTCCTCCCATGTCTTGCTC 59.820 60.000 0.00 0.00 0.00 4.26
5277 7738 0.179936 CTCCTCCCATGTCTTGCTCC 59.820 60.000 0.00 0.00 0.00 4.70
5278 7739 0.252881 TCCTCCCATGTCTTGCTCCT 60.253 55.000 0.00 0.00 0.00 3.69
5279 7740 0.179936 CCTCCCATGTCTTGCTCCTC 59.820 60.000 0.00 0.00 0.00 3.71
5280 7741 1.202330 CTCCCATGTCTTGCTCCTCT 58.798 55.000 0.00 0.00 0.00 3.69
5281 7742 0.907486 TCCCATGTCTTGCTCCTCTG 59.093 55.000 0.00 0.00 0.00 3.35
5282 7743 0.617413 CCCATGTCTTGCTCCTCTGT 59.383 55.000 0.00 0.00 0.00 3.41
5283 7744 1.406614 CCCATGTCTTGCTCCTCTGTC 60.407 57.143 0.00 0.00 0.00 3.51
5284 7745 1.554160 CCATGTCTTGCTCCTCTGTCT 59.446 52.381 0.00 0.00 0.00 3.41
5285 7746 2.027377 CCATGTCTTGCTCCTCTGTCTT 60.027 50.000 0.00 0.00 0.00 3.01
5286 7747 2.827800 TGTCTTGCTCCTCTGTCTTG 57.172 50.000 0.00 0.00 0.00 3.02
5287 7748 1.270518 TGTCTTGCTCCTCTGTCTTGC 60.271 52.381 0.00 0.00 0.00 4.01
5288 7749 0.322975 TCTTGCTCCTCTGTCTTGCC 59.677 55.000 0.00 0.00 0.00 4.52
5289 7750 0.676151 CTTGCTCCTCTGTCTTGCCC 60.676 60.000 0.00 0.00 0.00 5.36
5290 7751 2.125350 GCTCCTCTGTCTTGCCCG 60.125 66.667 0.00 0.00 0.00 6.13
5291 7752 2.125350 CTCCTCTGTCTTGCCCGC 60.125 66.667 0.00 0.00 0.00 6.13
5292 7753 3.672295 CTCCTCTGTCTTGCCCGCC 62.672 68.421 0.00 0.00 0.00 6.13
5330 7791 2.867472 CCACGTCGGCATGGTTTC 59.133 61.111 0.00 0.00 0.00 2.78
5331 7792 1.671054 CCACGTCGGCATGGTTTCT 60.671 57.895 0.00 0.00 0.00 2.52
5332 7793 1.234615 CCACGTCGGCATGGTTTCTT 61.235 55.000 0.00 0.00 0.00 2.52
5333 7794 0.110238 CACGTCGGCATGGTTTCTTG 60.110 55.000 0.00 0.00 0.00 3.02
5334 7795 1.234615 ACGTCGGCATGGTTTCTTGG 61.235 55.000 0.00 0.00 0.00 3.61
5335 7796 0.953471 CGTCGGCATGGTTTCTTGGA 60.953 55.000 0.00 0.00 0.00 3.53
5336 7797 0.804989 GTCGGCATGGTTTCTTGGAG 59.195 55.000 0.00 0.00 0.00 3.86
5337 7798 0.960364 TCGGCATGGTTTCTTGGAGC 60.960 55.000 0.00 0.00 0.00 4.70
5338 7799 1.508088 GGCATGGTTTCTTGGAGCG 59.492 57.895 0.00 0.00 0.00 5.03
5339 7800 0.960364 GGCATGGTTTCTTGGAGCGA 60.960 55.000 0.00 0.00 0.00 4.93
5340 7801 1.098050 GCATGGTTTCTTGGAGCGAT 58.902 50.000 0.00 0.00 0.00 4.58
5341 7802 1.202222 GCATGGTTTCTTGGAGCGATG 60.202 52.381 0.00 0.00 0.00 3.84
5342 7803 1.402968 CATGGTTTCTTGGAGCGATGG 59.597 52.381 0.00 0.00 0.00 3.51
5343 7804 0.322456 TGGTTTCTTGGAGCGATGGG 60.322 55.000 0.00 0.00 0.00 4.00
5344 7805 0.322546 GGTTTCTTGGAGCGATGGGT 60.323 55.000 0.00 0.00 0.00 4.51
5345 7806 1.087501 GTTTCTTGGAGCGATGGGTC 58.912 55.000 0.00 0.00 39.95 4.46
5352 7813 1.080434 GAGCGATGGGTCCGATAGC 60.080 63.158 10.41 10.41 34.60 2.97
5353 7814 1.806461 GAGCGATGGGTCCGATAGCA 61.806 60.000 18.64 0.00 34.60 3.49
5354 7815 1.373497 GCGATGGGTCCGATAGCAG 60.373 63.158 12.99 0.00 0.00 4.24
5355 7816 1.373497 CGATGGGTCCGATAGCAGC 60.373 63.158 0.00 0.00 0.00 5.25
5356 7817 1.373497 GATGGGTCCGATAGCAGCG 60.373 63.158 0.00 0.00 0.00 5.18
5357 7818 1.806461 GATGGGTCCGATAGCAGCGA 61.806 60.000 0.00 0.00 0.00 4.93
5358 7819 1.810606 ATGGGTCCGATAGCAGCGAG 61.811 60.000 0.00 0.00 0.00 5.03
5359 7820 2.194212 GGGTCCGATAGCAGCGAGA 61.194 63.158 0.00 0.00 0.00 4.04
5360 7821 1.734137 GGTCCGATAGCAGCGAGAA 59.266 57.895 0.00 0.00 0.00 2.87
5361 7822 0.595310 GGTCCGATAGCAGCGAGAAC 60.595 60.000 0.00 0.00 0.00 3.01
5362 7823 0.100682 GTCCGATAGCAGCGAGAACA 59.899 55.000 0.00 0.00 0.00 3.18
5363 7824 0.100682 TCCGATAGCAGCGAGAACAC 59.899 55.000 0.00 0.00 0.00 3.32
5364 7825 0.872021 CCGATAGCAGCGAGAACACC 60.872 60.000 0.00 0.00 0.00 4.16
5365 7826 1.202973 CGATAGCAGCGAGAACACCG 61.203 60.000 0.00 0.00 0.00 4.94
5366 7827 0.179134 GATAGCAGCGAGAACACCGT 60.179 55.000 0.00 0.00 0.00 4.83
5367 7828 0.458543 ATAGCAGCGAGAACACCGTG 60.459 55.000 0.00 0.00 0.00 4.94
5368 7829 2.486636 TAGCAGCGAGAACACCGTGG 62.487 60.000 3.03 0.00 0.00 4.94
5369 7830 2.338620 CAGCGAGAACACCGTGGA 59.661 61.111 3.03 0.00 0.00 4.02
5370 7831 1.734477 CAGCGAGAACACCGTGGAG 60.734 63.158 3.03 0.00 0.00 3.86
5371 7832 2.201022 AGCGAGAACACCGTGGAGT 61.201 57.895 3.03 0.00 0.00 3.85
5372 7833 0.892358 AGCGAGAACACCGTGGAGTA 60.892 55.000 3.03 0.00 0.00 2.59
5373 7834 0.731855 GCGAGAACACCGTGGAGTAC 60.732 60.000 3.03 0.00 0.00 2.73
5381 7842 2.202623 CGTGGAGTACGCCAGCTC 60.203 66.667 19.57 6.62 46.92 4.09
5382 7843 2.970639 GTGGAGTACGCCAGCTCA 59.029 61.111 19.57 0.00 38.95 4.26
5383 7844 1.153745 GTGGAGTACGCCAGCTCAG 60.154 63.158 19.57 0.00 38.95 3.35
5384 7845 2.202810 GGAGTACGCCAGCTCAGC 60.203 66.667 11.20 0.00 33.66 4.26
5385 7846 2.716017 GGAGTACGCCAGCTCAGCT 61.716 63.158 11.20 0.00 40.77 4.24
5386 7847 1.216710 GAGTACGCCAGCTCAGCTT 59.783 57.895 0.00 0.00 36.40 3.74
5387 7848 0.804156 GAGTACGCCAGCTCAGCTTC 60.804 60.000 0.00 0.00 36.40 3.86
5388 7849 1.216710 GTACGCCAGCTCAGCTTCT 59.783 57.895 0.00 0.00 36.40 2.85
5389 7850 1.080995 GTACGCCAGCTCAGCTTCTG 61.081 60.000 0.00 0.00 36.40 3.02
5390 7851 1.250840 TACGCCAGCTCAGCTTCTGA 61.251 55.000 0.00 0.00 36.40 3.27
5391 7852 2.099431 CGCCAGCTCAGCTTCTGAC 61.099 63.158 0.00 0.00 36.40 3.51
5392 7853 2.099431 GCCAGCTCAGCTTCTGACG 61.099 63.158 0.00 0.00 36.40 4.35
5393 7854 1.588597 CCAGCTCAGCTTCTGACGA 59.411 57.895 0.00 0.00 36.40 4.20
5394 7855 0.735632 CCAGCTCAGCTTCTGACGAC 60.736 60.000 0.00 0.00 36.40 4.34
5395 7856 1.069924 CAGCTCAGCTTCTGACGACG 61.070 60.000 0.00 0.00 36.40 5.12
5396 7857 1.803519 GCTCAGCTTCTGACGACGG 60.804 63.158 0.00 0.00 35.39 4.79
5397 7858 1.803519 CTCAGCTTCTGACGACGGC 60.804 63.158 0.00 0.00 35.39 5.68
5398 7859 2.049156 CAGCTTCTGACGACGGCA 60.049 61.111 2.00 2.00 32.44 5.69
5399 7860 1.446792 CAGCTTCTGACGACGGCAT 60.447 57.895 2.55 0.00 32.44 4.40
5400 7861 1.153745 AGCTTCTGACGACGGCATC 60.154 57.895 2.55 0.00 0.00 3.91
5401 7862 1.446099 GCTTCTGACGACGGCATCA 60.446 57.895 2.55 0.00 0.00 3.07
5402 7863 0.807667 GCTTCTGACGACGGCATCAT 60.808 55.000 2.55 0.00 0.00 2.45
5403 7864 1.645034 CTTCTGACGACGGCATCATT 58.355 50.000 2.55 0.00 0.00 2.57
5404 7865 2.809446 CTTCTGACGACGGCATCATTA 58.191 47.619 2.55 0.00 0.00 1.90
5405 7866 2.951457 TCTGACGACGGCATCATTAA 57.049 45.000 2.55 0.00 0.00 1.40
5406 7867 2.809446 TCTGACGACGGCATCATTAAG 58.191 47.619 2.55 0.00 0.00 1.85
5407 7868 1.860950 CTGACGACGGCATCATTAAGG 59.139 52.381 2.55 0.00 0.00 2.69
5408 7869 1.206132 TGACGACGGCATCATTAAGGT 59.794 47.619 0.00 0.00 0.00 3.50
5409 7870 2.427812 TGACGACGGCATCATTAAGGTA 59.572 45.455 0.00 0.00 0.00 3.08
5410 7871 3.119065 TGACGACGGCATCATTAAGGTAA 60.119 43.478 0.00 0.00 0.00 2.85
5411 7872 3.454375 ACGACGGCATCATTAAGGTAAG 58.546 45.455 0.00 0.00 0.00 2.34
5412 7873 3.118884 ACGACGGCATCATTAAGGTAAGT 60.119 43.478 0.00 0.00 0.00 2.24
5413 7874 3.869246 CGACGGCATCATTAAGGTAAGTT 59.131 43.478 0.00 0.00 0.00 2.66
5414 7875 4.025979 CGACGGCATCATTAAGGTAAGTTC 60.026 45.833 0.00 0.00 0.00 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
131 133 9.656040 CATGAACATTTTTAGAATCCATGGAAA 57.344 29.630 20.67 6.90 0.00 3.13
132 134 9.033711 TCATGAACATTTTTAGAATCCATGGAA 57.966 29.630 20.67 0.00 32.28 3.53
133 135 8.592529 TCATGAACATTTTTAGAATCCATGGA 57.407 30.769 18.88 18.88 32.28 3.41
134 136 9.826574 AATCATGAACATTTTTAGAATCCATGG 57.173 29.630 4.97 4.97 32.28 3.66
172 174 8.864069 ATTTAAACATTGTTGTGAAATCGTGA 57.136 26.923 2.13 0.00 35.83 4.35
328 331 5.898120 TGGGATGGTTCTCTTTTTATTCCA 58.102 37.500 0.00 0.00 0.00 3.53
329 332 6.850752 TTGGGATGGTTCTCTTTTTATTCC 57.149 37.500 0.00 0.00 0.00 3.01
417 432 5.336451 CCGGATTTTTCTTTTCGAGGGATTT 60.336 40.000 0.00 0.00 0.00 2.17
451 466 0.969917 CGAATGGATTTGGGGTGGCA 60.970 55.000 0.00 0.00 0.00 4.92
567 692 2.746803 GCATCCCACGCGTACCAAC 61.747 63.158 13.44 0.00 0.00 3.77
568 693 2.435234 GCATCCCACGCGTACCAA 60.435 61.111 13.44 0.00 0.00 3.67
742 870 2.262915 GTGCAGCTGCTACCGTCT 59.737 61.111 36.61 0.00 42.66 4.18
795 923 2.586635 TCGCCACGAACACACACC 60.587 61.111 0.00 0.00 31.06 4.16
951 1090 2.753452 CCTCGCTCTGTAACTGTAAGGA 59.247 50.000 0.00 0.00 39.30 3.36
953 1092 3.851976 ACCTCGCTCTGTAACTGTAAG 57.148 47.619 0.00 0.00 42.29 2.34
954 1093 4.553323 GAAACCTCGCTCTGTAACTGTAA 58.447 43.478 0.00 0.00 0.00 2.41
955 1094 3.057033 GGAAACCTCGCTCTGTAACTGTA 60.057 47.826 0.00 0.00 0.00 2.74
956 1095 2.288886 GGAAACCTCGCTCTGTAACTGT 60.289 50.000 0.00 0.00 0.00 3.55
1030 1171 2.222027 CAAAGTCTCCAAAGGTCGCTT 58.778 47.619 0.00 0.00 0.00 4.68
1135 1292 1.134610 GGGCTGCAGAAATGGAATTGG 60.135 52.381 20.43 0.00 36.10 3.16
1136 1293 1.551430 TGGGCTGCAGAAATGGAATTG 59.449 47.619 20.43 0.00 36.10 2.32
1137 1294 1.941377 TGGGCTGCAGAAATGGAATT 58.059 45.000 20.43 0.00 38.98 2.17
1138 1295 1.551883 GTTGGGCTGCAGAAATGGAAT 59.448 47.619 20.43 0.00 0.00 3.01
1139 1296 0.968405 GTTGGGCTGCAGAAATGGAA 59.032 50.000 20.43 0.00 0.00 3.53
1140 1297 0.112995 AGTTGGGCTGCAGAAATGGA 59.887 50.000 20.43 0.00 0.00 3.41
1145 1302 1.228245 GACCAGTTGGGCTGCAGAA 60.228 57.895 20.43 0.00 43.71 3.02
1155 1315 2.289002 GTGTGCTTCTTCAGACCAGTTG 59.711 50.000 0.00 0.00 0.00 3.16
1503 1689 0.319900 CAGACAACACCAGGTCGGAG 60.320 60.000 0.00 0.00 39.01 4.63
1910 2106 2.644151 AGTAGAACCCATCCCCTGTTT 58.356 47.619 0.00 0.00 0.00 2.83
1969 2168 2.135933 GCCCATGTAGTCGAGCATAAC 58.864 52.381 0.00 0.00 0.00 1.89
2155 2370 4.860907 TCTACATCCGCTCGAAAAGTTAAC 59.139 41.667 0.00 0.00 0.00 2.01
2433 2653 0.901827 TGGCAAGCCGAAGATACAGA 59.098 50.000 6.60 0.00 39.42 3.41
2672 3001 6.411376 TCCGTGGACTGAATAAATGTGTTAT 58.589 36.000 0.00 0.00 0.00 1.89
2842 3176 6.765989 CCTCTGTATTTGAATATCCCGACAAA 59.234 38.462 0.00 0.00 36.82 2.83
2953 3293 6.377996 TCCATTGTGGATTCCATACTTCTTTG 59.622 38.462 9.01 0.00 42.67 2.77
4152 6452 2.533266 TGAAGAGTGCACCAGTTCTC 57.467 50.000 14.63 3.00 0.00 2.87
4181 6481 7.744715 CCGTACAACTTCATTTAGTGAACAATC 59.255 37.037 0.00 0.00 41.79 2.67
4369 6680 9.672086 GTGATACTCACTGTATTCATAGAGTTC 57.328 37.037 10.56 9.11 43.73 3.01
4648 7093 1.869767 GCAAGAGAGGCATTACCATCG 59.130 52.381 0.00 0.00 43.14 3.84
4774 7234 9.768662 AAATTTTCAAGCTAAATGTTCATGAGT 57.231 25.926 0.00 0.00 0.00 3.41
4776 7236 9.761504 TGAAATTTTCAAGCTAAATGTTCATGA 57.238 25.926 9.36 0.00 36.59 3.07
4788 7248 9.947433 TTGATGGATTTATGAAATTTTCAAGCT 57.053 25.926 15.34 2.82 43.95 3.74
4803 7263 3.128589 GCTTCGCAGGTTTGATGGATTTA 59.871 43.478 0.00 0.00 0.00 1.40
4817 7277 2.163412 ACTAGAAGAGAGTGCTTCGCAG 59.837 50.000 0.00 0.00 46.81 5.18
4874 7334 8.746922 AATATGCCGCAAACATTGATTTATAG 57.253 30.769 0.00 0.00 0.00 1.31
4882 7342 8.746922 AATAATAGAATATGCCGCAAACATTG 57.253 30.769 0.00 0.00 0.00 2.82
4947 7408 9.090692 GGTTTTCTGCAATTTACTCGTAGTATA 57.909 33.333 0.00 0.00 29.64 1.47
4955 7416 4.982295 GTGGTGGTTTTCTGCAATTTACTC 59.018 41.667 0.00 0.00 0.00 2.59
4956 7417 4.649218 AGTGGTGGTTTTCTGCAATTTACT 59.351 37.500 0.00 0.00 0.00 2.24
4957 7418 4.944048 AGTGGTGGTTTTCTGCAATTTAC 58.056 39.130 0.00 0.00 0.00 2.01
4958 7419 5.606348 AAGTGGTGGTTTTCTGCAATTTA 57.394 34.783 0.00 0.00 0.00 1.40
4959 7420 4.486125 AAGTGGTGGTTTTCTGCAATTT 57.514 36.364 0.00 0.00 0.00 1.82
4960 7421 4.486125 AAAGTGGTGGTTTTCTGCAATT 57.514 36.364 0.00 0.00 0.00 2.32
4961 7422 5.606348 TTAAAGTGGTGGTTTTCTGCAAT 57.394 34.783 0.00 0.00 0.00 3.56
4962 7423 5.407407 TTTAAAGTGGTGGTTTTCTGCAA 57.593 34.783 0.00 0.00 0.00 4.08
4963 7424 4.142049 CCTTTAAAGTGGTGGTTTTCTGCA 60.142 41.667 14.03 0.00 0.00 4.41
4964 7425 4.368315 CCTTTAAAGTGGTGGTTTTCTGC 58.632 43.478 14.03 0.00 0.00 4.26
4965 7426 4.142049 TGCCTTTAAAGTGGTGGTTTTCTG 60.142 41.667 14.03 0.00 0.00 3.02
4966 7427 4.027437 TGCCTTTAAAGTGGTGGTTTTCT 58.973 39.130 14.03 0.00 0.00 2.52
4967 7428 4.394439 TGCCTTTAAAGTGGTGGTTTTC 57.606 40.909 14.03 0.00 0.00 2.29
4968 7429 4.765273 CTTGCCTTTAAAGTGGTGGTTTT 58.235 39.130 14.03 0.00 0.00 2.43
4969 7430 3.431626 GCTTGCCTTTAAAGTGGTGGTTT 60.432 43.478 14.03 0.00 0.00 3.27
4970 7431 2.102420 GCTTGCCTTTAAAGTGGTGGTT 59.898 45.455 14.03 0.00 0.00 3.67
4971 7432 1.686587 GCTTGCCTTTAAAGTGGTGGT 59.313 47.619 14.03 0.00 0.00 4.16
4972 7433 1.963515 AGCTTGCCTTTAAAGTGGTGG 59.036 47.619 14.03 0.41 0.00 4.61
4973 7434 2.887152 AGAGCTTGCCTTTAAAGTGGTG 59.113 45.455 14.03 0.02 0.00 4.17
4974 7435 2.887152 CAGAGCTTGCCTTTAAAGTGGT 59.113 45.455 14.03 6.78 0.00 4.16
4975 7436 3.565905 CAGAGCTTGCCTTTAAAGTGG 57.434 47.619 14.03 1.88 0.00 4.00
4987 7448 0.947244 AGTGGTTTTCGCAGAGCTTG 59.053 50.000 0.00 0.00 38.43 4.01
4988 7449 2.143925 GTAGTGGTTTTCGCAGAGCTT 58.856 47.619 0.00 0.00 38.43 3.74
4989 7450 1.070134 TGTAGTGGTTTTCGCAGAGCT 59.930 47.619 0.00 0.00 38.43 4.09
4990 7451 1.508632 TGTAGTGGTTTTCGCAGAGC 58.491 50.000 0.00 0.00 38.43 4.09
4991 7452 4.688879 TGTATTGTAGTGGTTTTCGCAGAG 59.311 41.667 0.00 0.00 38.43 3.35
4992 7453 4.633175 TGTATTGTAGTGGTTTTCGCAGA 58.367 39.130 0.00 0.00 0.00 4.26
4993 7454 5.545658 ATGTATTGTAGTGGTTTTCGCAG 57.454 39.130 0.00 0.00 0.00 5.18
4994 7455 5.950758 AATGTATTGTAGTGGTTTTCGCA 57.049 34.783 0.00 0.00 0.00 5.10
4995 7456 7.631915 AAAAATGTATTGTAGTGGTTTTCGC 57.368 32.000 0.00 0.00 0.00 4.70
5019 7480 5.289675 CGTAGACATGGTGTTTTTGCAAAAA 59.710 36.000 28.85 28.85 35.67 1.94
5020 7481 4.800993 CGTAGACATGGTGTTTTTGCAAAA 59.199 37.500 20.46 20.46 0.00 2.44
5021 7482 4.355437 CGTAGACATGGTGTTTTTGCAAA 58.645 39.130 8.05 8.05 0.00 3.68
5022 7483 3.243234 CCGTAGACATGGTGTTTTTGCAA 60.243 43.478 0.00 0.00 0.00 4.08
5023 7484 2.292016 CCGTAGACATGGTGTTTTTGCA 59.708 45.455 0.00 0.00 0.00 4.08
5024 7485 2.292292 ACCGTAGACATGGTGTTTTTGC 59.708 45.455 0.00 0.00 42.80 3.68
5025 7486 5.676532 TTACCGTAGACATGGTGTTTTTG 57.323 39.130 0.00 0.00 44.21 2.44
5026 7487 6.235664 AGATTACCGTAGACATGGTGTTTTT 58.764 36.000 0.00 0.00 44.21 1.94
5027 7488 5.801380 AGATTACCGTAGACATGGTGTTTT 58.199 37.500 0.00 0.00 44.21 2.43
5028 7489 5.416271 AGATTACCGTAGACATGGTGTTT 57.584 39.130 0.00 0.00 44.21 2.83
5029 7490 5.416271 AAGATTACCGTAGACATGGTGTT 57.584 39.130 0.00 0.00 44.21 3.32
5030 7491 5.416271 AAAGATTACCGTAGACATGGTGT 57.584 39.130 0.00 0.00 44.21 4.16
5031 7492 6.542852 CAAAAAGATTACCGTAGACATGGTG 58.457 40.000 0.00 0.00 44.21 4.17
5032 7493 5.123344 GCAAAAAGATTACCGTAGACATGGT 59.877 40.000 0.00 0.00 46.30 3.55
5033 7494 5.123186 TGCAAAAAGATTACCGTAGACATGG 59.877 40.000 0.00 0.00 36.82 3.66
5034 7495 6.092122 TCTGCAAAAAGATTACCGTAGACATG 59.908 38.462 0.00 0.00 0.00 3.21
5035 7496 6.170506 TCTGCAAAAAGATTACCGTAGACAT 58.829 36.000 0.00 0.00 0.00 3.06
5036 7497 5.543714 TCTGCAAAAAGATTACCGTAGACA 58.456 37.500 0.00 0.00 0.00 3.41
5037 7498 6.476243 TTCTGCAAAAAGATTACCGTAGAC 57.524 37.500 0.00 0.00 0.00 2.59
5038 7499 6.348213 GCTTTCTGCAAAAAGATTACCGTAGA 60.348 38.462 16.70 0.00 42.31 2.59
5039 7500 5.795441 GCTTTCTGCAAAAAGATTACCGTAG 59.205 40.000 16.70 0.00 42.31 3.51
5040 7501 5.695818 GCTTTCTGCAAAAAGATTACCGTA 58.304 37.500 16.70 0.00 42.31 4.02
5041 7502 4.546570 GCTTTCTGCAAAAAGATTACCGT 58.453 39.130 16.70 0.00 42.31 4.83
5055 7516 1.427020 GCCGATCAGTGCTTTCTGC 59.573 57.895 0.00 0.00 43.25 4.26
5056 7517 1.699656 CCGCCGATCAGTGCTTTCTG 61.700 60.000 0.00 0.00 36.85 3.02
5057 7518 1.448540 CCGCCGATCAGTGCTTTCT 60.449 57.895 0.00 0.00 0.00 2.52
5058 7519 0.811616 ATCCGCCGATCAGTGCTTTC 60.812 55.000 0.00 0.00 0.00 2.62
5059 7520 0.811616 GATCCGCCGATCAGTGCTTT 60.812 55.000 9.80 0.00 43.87 3.51
5060 7521 1.227380 GATCCGCCGATCAGTGCTT 60.227 57.895 9.80 0.00 43.87 3.91
5061 7522 2.419198 GATCCGCCGATCAGTGCT 59.581 61.111 9.80 0.00 43.87 4.40
5062 7523 3.032609 CGATCCGCCGATCAGTGC 61.033 66.667 14.20 0.00 44.55 4.40
5063 7524 2.355126 CCGATCCGCCGATCAGTG 60.355 66.667 14.20 0.00 44.55 3.66
5064 7525 3.606662 CCCGATCCGCCGATCAGT 61.607 66.667 14.20 0.00 44.55 3.41
5067 7528 4.726351 GAGCCCGATCCGCCGATC 62.726 72.222 5.09 5.09 41.43 3.69
5071 7532 2.306255 TTAACTGAGCCCGATCCGCC 62.306 60.000 0.00 0.00 0.00 6.13
5072 7533 0.876342 CTTAACTGAGCCCGATCCGC 60.876 60.000 0.00 0.00 0.00 5.54
5073 7534 0.876342 GCTTAACTGAGCCCGATCCG 60.876 60.000 0.00 0.00 36.66 4.18
5074 7535 0.466124 AGCTTAACTGAGCCCGATCC 59.534 55.000 0.00 0.00 43.74 3.36
5075 7536 1.936547 CAAGCTTAACTGAGCCCGATC 59.063 52.381 0.00 0.00 43.74 3.69
5076 7537 1.279271 ACAAGCTTAACTGAGCCCGAT 59.721 47.619 0.00 0.00 43.74 4.18
5077 7538 0.685097 ACAAGCTTAACTGAGCCCGA 59.315 50.000 0.00 0.00 43.74 5.14
5078 7539 1.523758 AACAAGCTTAACTGAGCCCG 58.476 50.000 0.00 0.00 43.74 6.13
5079 7540 4.700213 TCATAAACAAGCTTAACTGAGCCC 59.300 41.667 0.00 0.00 43.74 5.19
5080 7541 5.181245 TGTCATAAACAAGCTTAACTGAGCC 59.819 40.000 0.00 0.00 36.77 4.70
5081 7542 6.241207 TGTCATAAACAAGCTTAACTGAGC 57.759 37.500 0.00 0.00 36.53 4.26
5082 7543 6.621596 GCCTGTCATAAACAAGCTTAACTGAG 60.622 42.308 0.00 0.00 41.33 3.35
5083 7544 5.181245 GCCTGTCATAAACAAGCTTAACTGA 59.819 40.000 0.00 0.00 41.33 3.41
5084 7545 5.393962 GCCTGTCATAAACAAGCTTAACTG 58.606 41.667 0.00 0.00 41.33 3.16
5085 7546 4.154195 CGCCTGTCATAAACAAGCTTAACT 59.846 41.667 0.00 0.00 42.19 2.24
5086 7547 4.403453 CGCCTGTCATAAACAAGCTTAAC 58.597 43.478 0.00 0.00 42.19 2.01
5087 7548 3.438781 CCGCCTGTCATAAACAAGCTTAA 59.561 43.478 0.00 0.00 42.19 1.85
5088 7549 3.006940 CCGCCTGTCATAAACAAGCTTA 58.993 45.455 0.00 0.00 42.19 3.09
5089 7550 1.812571 CCGCCTGTCATAAACAAGCTT 59.187 47.619 0.00 0.00 42.19 3.74
5090 7551 1.453155 CCGCCTGTCATAAACAAGCT 58.547 50.000 0.00 0.00 42.19 3.74
5091 7552 0.451783 CCCGCCTGTCATAAACAAGC 59.548 55.000 0.00 0.00 41.16 4.01
5092 7553 1.094785 CCCCGCCTGTCATAAACAAG 58.905 55.000 0.00 0.00 37.45 3.16
5093 7554 0.963355 GCCCCGCCTGTCATAAACAA 60.963 55.000 0.00 0.00 37.45 2.83
5094 7555 1.377987 GCCCCGCCTGTCATAAACA 60.378 57.895 0.00 0.00 36.18 2.83
5095 7556 2.119029 GGCCCCGCCTGTCATAAAC 61.119 63.158 0.00 0.00 46.69 2.01
5096 7557 2.274104 GGCCCCGCCTGTCATAAA 59.726 61.111 0.00 0.00 46.69 1.40
5117 7578 1.355916 GGTGCCACGTACGCAAAAA 59.644 52.632 16.72 0.00 38.13 1.94
5118 7579 2.883468 CGGTGCCACGTACGCAAAA 61.883 57.895 16.72 0.00 38.13 2.44
5119 7580 3.339464 CGGTGCCACGTACGCAAA 61.339 61.111 16.72 0.00 38.13 3.68
5120 7581 4.588854 ACGGTGCCACGTACGCAA 62.589 61.111 16.72 0.00 46.58 4.85
5143 7604 1.735559 GTGTAACGGCTGTCGGGAC 60.736 63.158 6.61 3.85 44.45 4.46
5144 7605 2.652530 GTGTAACGGCTGTCGGGA 59.347 61.111 6.61 0.00 44.45 5.14
5155 7616 1.202320 CCGTCAAACGCCGTGTAAC 59.798 57.895 0.00 0.00 40.91 2.50
5156 7617 1.227205 ACCGTCAAACGCCGTGTAA 60.227 52.632 0.00 0.00 40.91 2.41
5157 7618 1.950130 CACCGTCAAACGCCGTGTA 60.950 57.895 0.00 0.00 40.91 2.90
5158 7619 3.266376 CACCGTCAAACGCCGTGT 61.266 61.111 0.00 0.00 40.91 4.49
5159 7620 4.659874 GCACCGTCAAACGCCGTG 62.660 66.667 0.00 5.03 40.91 4.94
5162 7623 3.322706 GATGGCACCGTCAAACGCC 62.323 63.158 3.95 0.00 45.11 5.68
5163 7624 2.175811 GATGGCACCGTCAAACGC 59.824 61.111 3.95 0.00 40.91 4.84
5164 7625 2.686816 GGGATGGCACCGTCAAACG 61.687 63.158 10.95 0.00 42.11 3.60
5165 7626 2.340328 GGGGATGGCACCGTCAAAC 61.340 63.158 10.95 0.90 33.86 2.93
5166 7627 2.034999 GGGGATGGCACCGTCAAA 59.965 61.111 10.95 0.00 33.86 2.69
5167 7628 4.041762 GGGGGATGGCACCGTCAA 62.042 66.667 10.95 0.00 39.04 3.18
5169 7630 4.176752 GAGGGGGATGGCACCGTC 62.177 72.222 0.00 0.00 44.41 4.79
5172 7633 4.129148 GTGGAGGGGGATGGCACC 62.129 72.222 0.00 0.00 36.60 5.01
5173 7634 4.129148 GGTGGAGGGGGATGGCAC 62.129 72.222 0.00 0.00 0.00 5.01
5191 7652 3.938637 GACCGGCCTTTTCAGGGGG 62.939 68.421 0.00 0.00 41.21 5.40
5192 7653 2.361230 GACCGGCCTTTTCAGGGG 60.361 66.667 0.00 0.00 41.21 4.79
5193 7654 2.746277 CGACCGGCCTTTTCAGGG 60.746 66.667 0.00 0.00 41.21 4.45
5194 7655 3.431725 GCGACCGGCCTTTTCAGG 61.432 66.667 0.00 0.00 44.28 3.86
5195 7656 2.358737 AGCGACCGGCCTTTTCAG 60.359 61.111 0.00 0.00 45.17 3.02
5196 7657 2.668212 CAGCGACCGGCCTTTTCA 60.668 61.111 0.00 0.00 45.17 2.69
5197 7658 4.103103 GCAGCGACCGGCCTTTTC 62.103 66.667 0.00 0.00 45.17 2.29
5210 7671 3.798511 GTAGGGAGTGGGGGCAGC 61.799 72.222 0.00 0.00 0.00 5.25
5211 7672 2.041265 AGTAGGGAGTGGGGGCAG 59.959 66.667 0.00 0.00 0.00 4.85
5212 7673 2.040606 GAGTAGGGAGTGGGGGCA 59.959 66.667 0.00 0.00 0.00 5.36
5213 7674 2.066999 CAGAGTAGGGAGTGGGGGC 61.067 68.421 0.00 0.00 0.00 5.80
5214 7675 0.688087 GACAGAGTAGGGAGTGGGGG 60.688 65.000 0.00 0.00 0.00 5.40
5215 7676 0.336737 AGACAGAGTAGGGAGTGGGG 59.663 60.000 0.00 0.00 0.00 4.96
5216 7677 1.770294 GAGACAGAGTAGGGAGTGGG 58.230 60.000 0.00 0.00 0.00 4.61
5217 7678 1.384525 CGAGACAGAGTAGGGAGTGG 58.615 60.000 0.00 0.00 0.00 4.00
5218 7679 0.736053 GCGAGACAGAGTAGGGAGTG 59.264 60.000 0.00 0.00 0.00 3.51
5219 7680 0.621609 AGCGAGACAGAGTAGGGAGT 59.378 55.000 0.00 0.00 0.00 3.85
5220 7681 1.021202 CAGCGAGACAGAGTAGGGAG 58.979 60.000 0.00 0.00 0.00 4.30
5221 7682 1.032657 GCAGCGAGACAGAGTAGGGA 61.033 60.000 0.00 0.00 0.00 4.20
5222 7683 1.034838 AGCAGCGAGACAGAGTAGGG 61.035 60.000 0.00 0.00 0.00 3.53
5223 7684 0.380378 GAGCAGCGAGACAGAGTAGG 59.620 60.000 0.00 0.00 0.00 3.18
5224 7685 1.330521 GAGAGCAGCGAGACAGAGTAG 59.669 57.143 0.00 0.00 0.00 2.57
5225 7686 1.374560 GAGAGCAGCGAGACAGAGTA 58.625 55.000 0.00 0.00 0.00 2.59
5226 7687 1.312371 GGAGAGCAGCGAGACAGAGT 61.312 60.000 0.00 0.00 0.00 3.24
5227 7688 1.031571 AGGAGAGCAGCGAGACAGAG 61.032 60.000 0.00 0.00 0.00 3.35
5228 7689 1.001517 AGGAGAGCAGCGAGACAGA 60.002 57.895 0.00 0.00 0.00 3.41
5229 7690 1.031571 AGAGGAGAGCAGCGAGACAG 61.032 60.000 0.00 0.00 0.00 3.51
5230 7691 1.001517 AGAGGAGAGCAGCGAGACA 60.002 57.895 0.00 0.00 0.00 3.41
5231 7692 1.727467 GAGAGGAGAGCAGCGAGAC 59.273 63.158 0.00 0.00 0.00 3.36
5232 7693 1.817520 CGAGAGGAGAGCAGCGAGA 60.818 63.158 0.00 0.00 0.00 4.04
5233 7694 2.715005 CGAGAGGAGAGCAGCGAG 59.285 66.667 0.00 0.00 0.00 5.03
5234 7695 3.513438 GCGAGAGGAGAGCAGCGA 61.513 66.667 0.00 0.00 0.00 4.93
5235 7696 3.468266 GAGCGAGAGGAGAGCAGCG 62.468 68.421 0.00 0.00 0.00 5.18
5236 7697 2.412937 GAGCGAGAGGAGAGCAGC 59.587 66.667 0.00 0.00 0.00 5.25
5237 7698 1.031571 AGTGAGCGAGAGGAGAGCAG 61.032 60.000 0.00 0.00 0.00 4.24
5238 7699 1.001517 AGTGAGCGAGAGGAGAGCA 60.002 57.895 0.00 0.00 0.00 4.26
5239 7700 1.724582 GGAGTGAGCGAGAGGAGAGC 61.725 65.000 0.00 0.00 0.00 4.09
5240 7701 0.107214 AGGAGTGAGCGAGAGGAGAG 60.107 60.000 0.00 0.00 0.00 3.20
5241 7702 0.107410 GAGGAGTGAGCGAGAGGAGA 60.107 60.000 0.00 0.00 0.00 3.71
5242 7703 1.101049 GGAGGAGTGAGCGAGAGGAG 61.101 65.000 0.00 0.00 0.00 3.69
5243 7704 1.077357 GGAGGAGTGAGCGAGAGGA 60.077 63.158 0.00 0.00 0.00 3.71
5244 7705 1.077068 AGGAGGAGTGAGCGAGAGG 60.077 63.158 0.00 0.00 0.00 3.69
5245 7706 1.101049 GGAGGAGGAGTGAGCGAGAG 61.101 65.000 0.00 0.00 0.00 3.20
5246 7707 1.077357 GGAGGAGGAGTGAGCGAGA 60.077 63.158 0.00 0.00 0.00 4.04
5247 7708 2.124693 GGGAGGAGGAGTGAGCGAG 61.125 68.421 0.00 0.00 0.00 5.03
5248 7709 2.043852 GGGAGGAGGAGTGAGCGA 60.044 66.667 0.00 0.00 0.00 4.93
5249 7710 1.760086 ATGGGAGGAGGAGTGAGCG 60.760 63.158 0.00 0.00 0.00 5.03
5250 7711 0.980231 ACATGGGAGGAGGAGTGAGC 60.980 60.000 0.00 0.00 0.00 4.26
5251 7712 1.118838 GACATGGGAGGAGGAGTGAG 58.881 60.000 0.00 0.00 0.00 3.51
5252 7713 0.712979 AGACATGGGAGGAGGAGTGA 59.287 55.000 0.00 0.00 0.00 3.41
5253 7714 1.209019 CAAGACATGGGAGGAGGAGTG 59.791 57.143 0.00 0.00 0.00 3.51
5254 7715 1.577736 CAAGACATGGGAGGAGGAGT 58.422 55.000 0.00 0.00 0.00 3.85
5255 7716 0.179936 GCAAGACATGGGAGGAGGAG 59.820 60.000 0.00 0.00 0.00 3.69
5256 7717 0.252881 AGCAAGACATGGGAGGAGGA 60.253 55.000 0.00 0.00 0.00 3.71
5257 7718 0.179936 GAGCAAGACATGGGAGGAGG 59.820 60.000 0.00 0.00 0.00 4.30
5258 7719 0.179936 GGAGCAAGACATGGGAGGAG 59.820 60.000 0.00 0.00 0.00 3.69
5259 7720 0.252881 AGGAGCAAGACATGGGAGGA 60.253 55.000 0.00 0.00 0.00 3.71
5260 7721 0.179936 GAGGAGCAAGACATGGGAGG 59.820 60.000 0.00 0.00 0.00 4.30
5261 7722 1.134461 CAGAGGAGCAAGACATGGGAG 60.134 57.143 0.00 0.00 0.00 4.30
5262 7723 0.907486 CAGAGGAGCAAGACATGGGA 59.093 55.000 0.00 0.00 0.00 4.37
5263 7724 0.617413 ACAGAGGAGCAAGACATGGG 59.383 55.000 0.00 0.00 0.00 4.00
5264 7725 1.554160 AGACAGAGGAGCAAGACATGG 59.446 52.381 0.00 0.00 0.00 3.66
5265 7726 3.001414 CAAGACAGAGGAGCAAGACATG 58.999 50.000 0.00 0.00 0.00 3.21
5266 7727 2.614987 GCAAGACAGAGGAGCAAGACAT 60.615 50.000 0.00 0.00 0.00 3.06
5267 7728 1.270518 GCAAGACAGAGGAGCAAGACA 60.271 52.381 0.00 0.00 0.00 3.41
5268 7729 1.437625 GCAAGACAGAGGAGCAAGAC 58.562 55.000 0.00 0.00 0.00 3.01
5269 7730 0.322975 GGCAAGACAGAGGAGCAAGA 59.677 55.000 0.00 0.00 0.00 3.02
5270 7731 0.676151 GGGCAAGACAGAGGAGCAAG 60.676 60.000 0.00 0.00 0.00 4.01
5271 7732 1.376466 GGGCAAGACAGAGGAGCAA 59.624 57.895 0.00 0.00 0.00 3.91
5272 7733 2.947532 CGGGCAAGACAGAGGAGCA 61.948 63.158 0.00 0.00 0.00 4.26
5273 7734 2.125350 CGGGCAAGACAGAGGAGC 60.125 66.667 0.00 0.00 0.00 4.70
5274 7735 2.125350 GCGGGCAAGACAGAGGAG 60.125 66.667 0.00 0.00 0.00 3.69
5275 7736 3.706373 GGCGGGCAAGACAGAGGA 61.706 66.667 0.00 0.00 0.00 3.71
5314 7775 0.110238 CAAGAAACCATGCCGACGTG 60.110 55.000 0.00 0.00 0.00 4.49
5315 7776 1.234615 CCAAGAAACCATGCCGACGT 61.235 55.000 0.00 0.00 0.00 4.34
5316 7777 0.953471 TCCAAGAAACCATGCCGACG 60.953 55.000 0.00 0.00 0.00 5.12
5317 7778 0.804989 CTCCAAGAAACCATGCCGAC 59.195 55.000 0.00 0.00 0.00 4.79
5318 7779 0.960364 GCTCCAAGAAACCATGCCGA 60.960 55.000 0.00 0.00 0.00 5.54
5319 7780 1.508088 GCTCCAAGAAACCATGCCG 59.492 57.895 0.00 0.00 0.00 5.69
5320 7781 0.960364 TCGCTCCAAGAAACCATGCC 60.960 55.000 0.00 0.00 0.00 4.40
5321 7782 1.098050 ATCGCTCCAAGAAACCATGC 58.902 50.000 0.00 0.00 0.00 4.06
5322 7783 1.402968 CCATCGCTCCAAGAAACCATG 59.597 52.381 0.00 0.00 0.00 3.66
5323 7784 1.683011 CCCATCGCTCCAAGAAACCAT 60.683 52.381 0.00 0.00 0.00 3.55
5324 7785 0.322456 CCCATCGCTCCAAGAAACCA 60.322 55.000 0.00 0.00 0.00 3.67
5325 7786 0.322546 ACCCATCGCTCCAAGAAACC 60.323 55.000 0.00 0.00 0.00 3.27
5326 7787 1.087501 GACCCATCGCTCCAAGAAAC 58.912 55.000 0.00 0.00 0.00 2.78
5327 7788 0.035439 GGACCCATCGCTCCAAGAAA 60.035 55.000 0.00 0.00 0.00 2.52
5328 7789 1.602237 GGACCCATCGCTCCAAGAA 59.398 57.895 0.00 0.00 0.00 2.52
5329 7790 2.721167 CGGACCCATCGCTCCAAGA 61.721 63.158 0.00 0.00 0.00 3.02
5330 7791 2.032860 ATCGGACCCATCGCTCCAAG 62.033 60.000 0.00 0.00 0.00 3.61
5331 7792 0.757561 TATCGGACCCATCGCTCCAA 60.758 55.000 0.00 0.00 0.00 3.53
5332 7793 1.152631 TATCGGACCCATCGCTCCA 60.153 57.895 0.00 0.00 0.00 3.86
5333 7794 1.587054 CTATCGGACCCATCGCTCC 59.413 63.158 0.00 0.00 0.00 4.70
5334 7795 1.080434 GCTATCGGACCCATCGCTC 60.080 63.158 0.00 0.00 0.00 5.03
5335 7796 1.810606 CTGCTATCGGACCCATCGCT 61.811 60.000 0.00 0.00 0.00 4.93
5336 7797 1.373497 CTGCTATCGGACCCATCGC 60.373 63.158 0.00 0.00 0.00 4.58
5337 7798 1.373497 GCTGCTATCGGACCCATCG 60.373 63.158 0.00 0.00 0.00 3.84
5338 7799 1.373497 CGCTGCTATCGGACCCATC 60.373 63.158 0.00 0.00 0.00 3.51
5339 7800 1.810606 CTCGCTGCTATCGGACCCAT 61.811 60.000 0.00 0.00 0.00 4.00
5340 7801 2.441348 TCGCTGCTATCGGACCCA 60.441 61.111 0.00 0.00 0.00 4.51
5341 7802 1.735376 TTCTCGCTGCTATCGGACCC 61.735 60.000 0.00 0.00 0.00 4.46
5342 7803 0.595310 GTTCTCGCTGCTATCGGACC 60.595 60.000 0.00 0.00 0.00 4.46
5343 7804 0.100682 TGTTCTCGCTGCTATCGGAC 59.899 55.000 0.00 0.00 0.00 4.79
5344 7805 0.100682 GTGTTCTCGCTGCTATCGGA 59.899 55.000 0.00 0.00 0.00 4.55
5345 7806 0.872021 GGTGTTCTCGCTGCTATCGG 60.872 60.000 0.00 0.00 0.00 4.18
5346 7807 1.202973 CGGTGTTCTCGCTGCTATCG 61.203 60.000 0.00 0.00 0.00 2.92
5347 7808 0.179134 ACGGTGTTCTCGCTGCTATC 60.179 55.000 0.00 0.00 34.14 2.08
5348 7809 0.458543 CACGGTGTTCTCGCTGCTAT 60.459 55.000 0.00 0.00 34.14 2.97
5349 7810 1.080772 CACGGTGTTCTCGCTGCTA 60.081 57.895 0.00 0.00 34.14 3.49
5350 7811 2.356313 CACGGTGTTCTCGCTGCT 60.356 61.111 0.00 0.00 34.14 4.24
5351 7812 3.414700 CCACGGTGTTCTCGCTGC 61.415 66.667 7.45 0.00 34.14 5.25
5352 7813 1.734477 CTCCACGGTGTTCTCGCTG 60.734 63.158 7.45 0.00 36.60 5.18
5353 7814 0.892358 TACTCCACGGTGTTCTCGCT 60.892 55.000 7.45 0.00 0.00 4.93
5354 7815 0.731855 GTACTCCACGGTGTTCTCGC 60.732 60.000 7.45 0.00 0.00 5.03
5355 7816 3.396491 GTACTCCACGGTGTTCTCG 57.604 57.895 7.45 0.00 0.00 4.04
5365 7826 1.153745 CTGAGCTGGCGTACTCCAC 60.154 63.158 0.00 0.00 31.65 4.02
5366 7827 3.006756 GCTGAGCTGGCGTACTCCA 62.007 63.158 4.17 4.17 31.65 3.86
5367 7828 2.202810 GCTGAGCTGGCGTACTCC 60.203 66.667 0.00 0.00 31.65 3.85
5368 7829 0.804156 GAAGCTGAGCTGGCGTACTC 60.804 60.000 8.16 0.00 39.62 2.59
5369 7830 1.216710 GAAGCTGAGCTGGCGTACT 59.783 57.895 8.16 0.00 39.62 2.73
5370 7831 1.080995 CAGAAGCTGAGCTGGCGTAC 61.081 60.000 8.16 0.00 39.62 3.67
5371 7832 1.216444 CAGAAGCTGAGCTGGCGTA 59.784 57.895 8.16 0.00 39.62 4.42
5372 7833 2.047465 CAGAAGCTGAGCTGGCGT 60.047 61.111 8.16 0.00 39.62 5.68
5373 7834 2.099431 GTCAGAAGCTGAGCTGGCG 61.099 63.158 8.16 0.00 41.46 5.69
5374 7835 2.099431 CGTCAGAAGCTGAGCTGGC 61.099 63.158 8.16 3.22 41.46 4.85
5375 7836 0.735632 GTCGTCAGAAGCTGAGCTGG 60.736 60.000 8.16 0.58 41.46 4.85
5376 7837 1.069924 CGTCGTCAGAAGCTGAGCTG 61.070 60.000 8.16 0.00 41.46 4.24
5377 7838 1.211449 CGTCGTCAGAAGCTGAGCT 59.789 57.895 0.00 0.00 41.46 4.09
5378 7839 1.803519 CCGTCGTCAGAAGCTGAGC 60.804 63.158 0.00 0.00 41.46 4.26
5379 7840 1.803519 GCCGTCGTCAGAAGCTGAG 60.804 63.158 0.00 0.00 41.46 3.35
5380 7841 1.877576 ATGCCGTCGTCAGAAGCTGA 61.878 55.000 0.00 0.00 38.25 4.26
5381 7842 1.416813 GATGCCGTCGTCAGAAGCTG 61.417 60.000 0.00 0.00 0.00 4.24
5382 7843 1.153745 GATGCCGTCGTCAGAAGCT 60.154 57.895 0.00 0.00 0.00 3.74
5383 7844 0.807667 ATGATGCCGTCGTCAGAAGC 60.808 55.000 0.00 0.00 41.15 3.86
5384 7845 1.645034 AATGATGCCGTCGTCAGAAG 58.355 50.000 0.00 0.00 41.15 2.85
5385 7846 2.951457 TAATGATGCCGTCGTCAGAA 57.049 45.000 0.00 0.00 41.15 3.02
5386 7847 2.481276 CCTTAATGATGCCGTCGTCAGA 60.481 50.000 0.00 0.00 41.15 3.27
5387 7848 1.860950 CCTTAATGATGCCGTCGTCAG 59.139 52.381 0.00 0.00 41.15 3.51
5388 7849 1.206132 ACCTTAATGATGCCGTCGTCA 59.794 47.619 0.00 0.00 41.97 4.35
5389 7850 1.935933 ACCTTAATGATGCCGTCGTC 58.064 50.000 0.00 0.00 0.00 4.20
5390 7851 3.118884 ACTTACCTTAATGATGCCGTCGT 60.119 43.478 0.00 0.00 0.00 4.34
5391 7852 3.454375 ACTTACCTTAATGATGCCGTCG 58.546 45.455 0.00 0.00 0.00 5.12
5392 7853 5.405331 GAACTTACCTTAATGATGCCGTC 57.595 43.478 0.00 0.00 0.00 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.