Multiple sequence alignment - TraesCS2B01G511300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G511300 chr2B 100.000 5479 0 0 1 5479 707243589 707238111 0.000000e+00 10118.0
1 TraesCS2B01G511300 chr2B 85.473 2609 296 48 945 3520 758666275 758668833 0.000000e+00 2641.0
2 TraesCS2B01G511300 chr2B 97.015 804 23 1 4676 5479 707185620 707184818 0.000000e+00 1351.0
3 TraesCS2B01G511300 chr2B 86.660 952 97 18 3576 4518 758670736 758671666 0.000000e+00 1027.0
4 TraesCS2B01G511300 chr2B 78.193 1284 231 31 3094 4363 759440953 759442201 0.000000e+00 774.0
5 TraesCS2B01G511300 chr2B 77.847 1282 238 37 3094 4363 759346704 759347951 0.000000e+00 752.0
6 TraesCS2B01G511300 chr2B 94.694 245 10 3 1 242 73972403 73972159 1.440000e-100 377.0
7 TraesCS2B01G511300 chr2B 73.440 1058 234 38 3303 4351 756604228 756603209 2.430000e-93 353.0
8 TraesCS2B01G511300 chr2B 80.320 437 71 12 3100 3532 706731457 706731032 3.190000e-82 316.0
9 TraesCS2B01G511300 chr2B 79.863 437 74 11 3100 3532 706923393 706922967 1.920000e-79 307.0
10 TraesCS2B01G511300 chr2B 90.909 99 7 1 222 320 73969314 73969218 1.240000e-26 132.0
11 TraesCS2B01G511300 chr2B 82.119 151 13 7 445 591 758665723 758665863 3.470000e-22 117.0
12 TraesCS2B01G511300 chr2B 82.313 147 12 7 449 591 757908168 757908032 1.250000e-21 115.0
13 TraesCS2B01G511300 chr2B 95.000 60 2 1 222 281 73969416 73969358 5.840000e-15 93.5
14 TraesCS2B01G511300 chr2D 85.805 3628 396 59 945 4518 619565988 619569550 0.000000e+00 3736.0
15 TraesCS2B01G511300 chr2D 91.994 1449 96 12 3130 4565 585750303 585748862 0.000000e+00 2015.0
16 TraesCS2B01G511300 chr2D 93.497 1307 45 4 1825 3100 585751594 585750297 0.000000e+00 1906.0
17 TraesCS2B01G511300 chr2D 95.040 867 39 4 959 1823 585756438 585755574 0.000000e+00 1360.0
18 TraesCS2B01G511300 chr2D 78.977 1251 227 18 1024 2267 585696158 585694937 0.000000e+00 821.0
19 TraesCS2B01G511300 chr2D 78.043 1339 231 37 3094 4409 619702781 619704079 0.000000e+00 785.0
20 TraesCS2B01G511300 chr2D 77.354 1338 247 38 3094 4410 619664755 619666057 0.000000e+00 741.0
21 TraesCS2B01G511300 chr2D 86.525 423 35 13 431 839 585764157 585763743 3.890000e-121 446.0
22 TraesCS2B01G511300 chr2D 72.547 1060 248 34 3300 4351 619092158 619093182 6.900000e-79 305.0
23 TraesCS2B01G511300 chr2D 79.176 437 79 11 3100 3532 585687496 585687068 5.370000e-75 292.0
24 TraesCS2B01G511300 chr2D 82.684 231 38 2 3300 3529 619405011 619405240 2.590000e-48 204.0
25 TraesCS2B01G511300 chr2D 80.095 211 40 2 3312 3521 619575537 619575746 7.350000e-34 156.0
26 TraesCS2B01G511300 chr2D 83.673 147 10 7 449 591 619565468 619565604 5.760000e-25 126.0
27 TraesCS2B01G511300 chr2D 76.549 226 47 5 3302 3524 585737944 585737722 9.640000e-23 119.0
28 TraesCS2B01G511300 chr2D 85.000 60 6 3 276 334 59702113 59702170 2.130000e-04 58.4
29 TraesCS2B01G511300 chr2A 96.231 1990 74 1 1465 3454 719797818 719795830 0.000000e+00 3258.0
30 TraesCS2B01G511300 chr2A 83.067 1937 251 44 2618 4518 751167146 751169041 0.000000e+00 1688.0
31 TraesCS2B01G511300 chr2A 82.854 1913 249 44 2614 4486 751028113 751029986 0.000000e+00 1642.0
32 TraesCS2B01G511300 chr2A 80.162 1361 231 26 945 2291 751013291 751014626 0.000000e+00 981.0
33 TraesCS2B01G511300 chr2A 78.125 1248 245 19 1030 2267 751037349 751038578 0.000000e+00 767.0
34 TraesCS2B01G511300 chr2A 92.015 551 31 6 947 1495 719798359 719797820 0.000000e+00 761.0
35 TraesCS2B01G511300 chr2A 78.236 1066 202 20 946 1996 751171918 751172968 0.000000e+00 656.0
36 TraesCS2B01G511300 chr2A 77.059 1129 239 17 1018 2137 719732075 719730958 2.780000e-177 632.0
37 TraesCS2B01G511300 chr2A 85.991 464 41 14 449 892 719798815 719798356 4.970000e-130 475.0
38 TraesCS2B01G511300 chr2A 79.727 439 73 12 3100 3532 719730162 719729734 2.480000e-78 303.0
39 TraesCS2B01G511300 chr2A 72.514 1066 238 43 3300 4351 749954191 749955215 1.490000e-75 294.0
40 TraesCS2B01G511300 chr2A 75.726 585 96 28 2447 3003 752295668 752295102 9.110000e-63 252.0
41 TraesCS2B01G511300 chr2A 82.251 231 39 2 3300 3529 750556943 750557172 1.200000e-46 198.0
42 TraesCS2B01G511300 chr2A 77.686 121 20 4 565 685 751037294 751037407 3.540000e-07 67.6
43 TraesCS2B01G511300 chr6B 94.767 879 45 1 4597 5475 121891576 121892453 0.000000e+00 1367.0
44 TraesCS2B01G511300 chr5B 93.408 804 51 2 4676 5479 594949148 594949949 0.000000e+00 1190.0
45 TraesCS2B01G511300 chr5B 96.141 311 9 3 23 331 589467110 589467419 6.330000e-139 505.0
46 TraesCS2B01G511300 chr5B 79.470 151 27 4 3373 3521 533514992 533514844 2.700000e-18 104.0
47 TraesCS2B01G511300 chr3B 90.930 871 78 1 4602 5472 53620859 53621728 0.000000e+00 1170.0
48 TraesCS2B01G511300 chr3B 89.819 884 89 1 4596 5479 726831773 726832655 0.000000e+00 1133.0
49 TraesCS2B01G511300 chr3B 89.966 877 86 2 4596 5472 62449742 62448868 0.000000e+00 1131.0
50 TraesCS2B01G511300 chr3B 89.954 876 85 3 4597 5472 62475081 62474209 0.000000e+00 1127.0
51 TraesCS2B01G511300 chr3B 89.694 883 89 2 4597 5479 726818990 726819870 0.000000e+00 1125.0
52 TraesCS2B01G511300 chr7B 90.114 880 85 2 4596 5475 522250864 522249987 0.000000e+00 1142.0
53 TraesCS2B01G511300 chr7B 74.133 750 158 26 3614 4337 654921676 654922415 1.500000e-70 278.0
54 TraesCS2B01G511300 chr7B 94.375 160 7 1 180 337 731895090 731895249 1.520000e-60 244.0
55 TraesCS2B01G511300 chr7B 92.254 142 9 2 2 142 731894952 731895092 3.350000e-47 200.0
56 TraesCS2B01G511300 chr7B 94.231 52 3 0 280 331 74328499 74328448 4.550000e-11 80.5
57 TraesCS2B01G511300 chr7B 90.566 53 5 0 279 331 616778407 616778459 2.740000e-08 71.3
58 TraesCS2B01G511300 chr4B 93.675 332 19 2 1 331 648691599 648691929 3.810000e-136 496.0
59 TraesCS2B01G511300 chr7A 74.359 1092 216 51 3300 4345 675589159 675590232 1.840000e-109 407.0
60 TraesCS2B01G511300 chr7A 89.552 67 7 0 265 331 18608219 18608153 9.780000e-13 86.1
61 TraesCS2B01G511300 chr7A 94.444 54 3 0 280 333 609128043 609127990 3.520000e-12 84.2
62 TraesCS2B01G511300 chr1A 78.443 334 36 15 3 331 488216602 488216904 9.370000e-43 185.0
63 TraesCS2B01G511300 chr7D 73.256 430 104 10 3925 4347 585559226 585559651 4.420000e-31 147.0
64 TraesCS2B01G511300 chr3A 91.209 91 7 1 242 332 655577871 655577782 7.450000e-24 122.0
65 TraesCS2B01G511300 chr6D 97.727 44 1 0 288 331 277266002 277266045 5.890000e-10 76.8
66 TraesCS2B01G511300 chr1B 94.000 50 3 0 282 331 592637980 592638029 5.890000e-10 76.8
67 TraesCS2B01G511300 chr5D 77.143 140 20 8 3302 3438 438443081 438442951 2.740000e-08 71.3
68 TraesCS2B01G511300 chr4D 85.246 61 8 1 273 333 70117355 70117414 1.650000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G511300 chr2B 707238111 707243589 5478 True 10118.000000 10118 100.000000 1 5479 1 chr2B.!!$R4 5478
1 TraesCS2B01G511300 chr2B 707184818 707185620 802 True 1351.000000 1351 97.015000 4676 5479 1 chr2B.!!$R3 803
2 TraesCS2B01G511300 chr2B 758665723 758671666 5943 False 1261.666667 2641 84.750667 445 4518 3 chr2B.!!$F3 4073
3 TraesCS2B01G511300 chr2B 759440953 759442201 1248 False 774.000000 774 78.193000 3094 4363 1 chr2B.!!$F2 1269
4 TraesCS2B01G511300 chr2B 759346704 759347951 1247 False 752.000000 752 77.847000 3094 4363 1 chr2B.!!$F1 1269
5 TraesCS2B01G511300 chr2B 756603209 756604228 1019 True 353.000000 353 73.440000 3303 4351 1 chr2B.!!$R5 1048
6 TraesCS2B01G511300 chr2B 73969218 73972403 3185 True 200.833333 377 93.534333 1 320 3 chr2B.!!$R7 319
7 TraesCS2B01G511300 chr2D 619565468 619569550 4082 False 1931.000000 3736 84.739000 449 4518 2 chr2D.!!$F7 4069
8 TraesCS2B01G511300 chr2D 585748862 585756438 7576 True 1760.333333 2015 93.510333 959 4565 3 chr2D.!!$R5 3606
9 TraesCS2B01G511300 chr2D 585694937 585696158 1221 True 821.000000 821 78.977000 1024 2267 1 chr2D.!!$R2 1243
10 TraesCS2B01G511300 chr2D 619702781 619704079 1298 False 785.000000 785 78.043000 3094 4409 1 chr2D.!!$F6 1315
11 TraesCS2B01G511300 chr2D 619664755 619666057 1302 False 741.000000 741 77.354000 3094 4410 1 chr2D.!!$F5 1316
12 TraesCS2B01G511300 chr2D 619092158 619093182 1024 False 305.000000 305 72.547000 3300 4351 1 chr2D.!!$F2 1051
13 TraesCS2B01G511300 chr2A 751028113 751029986 1873 False 1642.000000 1642 82.854000 2614 4486 1 chr2A.!!$F4 1872
14 TraesCS2B01G511300 chr2A 719795830 719798815 2985 True 1498.000000 3258 91.412333 449 3454 3 chr2A.!!$R3 3005
15 TraesCS2B01G511300 chr2A 751167146 751172968 5822 False 1172.000000 1688 80.651500 946 4518 2 chr2A.!!$F6 3572
16 TraesCS2B01G511300 chr2A 751013291 751014626 1335 False 981.000000 981 80.162000 945 2291 1 chr2A.!!$F3 1346
17 TraesCS2B01G511300 chr2A 719729734 719732075 2341 True 467.500000 632 78.393000 1018 3532 2 chr2A.!!$R2 2514
18 TraesCS2B01G511300 chr2A 751037294 751038578 1284 False 417.300000 767 77.905500 565 2267 2 chr2A.!!$F5 1702
19 TraesCS2B01G511300 chr2A 749954191 749955215 1024 False 294.000000 294 72.514000 3300 4351 1 chr2A.!!$F1 1051
20 TraesCS2B01G511300 chr2A 752295102 752295668 566 True 252.000000 252 75.726000 2447 3003 1 chr2A.!!$R1 556
21 TraesCS2B01G511300 chr6B 121891576 121892453 877 False 1367.000000 1367 94.767000 4597 5475 1 chr6B.!!$F1 878
22 TraesCS2B01G511300 chr5B 594949148 594949949 801 False 1190.000000 1190 93.408000 4676 5479 1 chr5B.!!$F2 803
23 TraesCS2B01G511300 chr3B 53620859 53621728 869 False 1170.000000 1170 90.930000 4602 5472 1 chr3B.!!$F1 870
24 TraesCS2B01G511300 chr3B 726831773 726832655 882 False 1133.000000 1133 89.819000 4596 5479 1 chr3B.!!$F3 883
25 TraesCS2B01G511300 chr3B 62448868 62449742 874 True 1131.000000 1131 89.966000 4596 5472 1 chr3B.!!$R1 876
26 TraesCS2B01G511300 chr3B 62474209 62475081 872 True 1127.000000 1127 89.954000 4597 5472 1 chr3B.!!$R2 875
27 TraesCS2B01G511300 chr3B 726818990 726819870 880 False 1125.000000 1125 89.694000 4597 5479 1 chr3B.!!$F2 882
28 TraesCS2B01G511300 chr7B 522249987 522250864 877 True 1142.000000 1142 90.114000 4596 5475 1 chr7B.!!$R2 879
29 TraesCS2B01G511300 chr7B 654921676 654922415 739 False 278.000000 278 74.133000 3614 4337 1 chr7B.!!$F2 723
30 TraesCS2B01G511300 chr7A 675589159 675590232 1073 False 407.000000 407 74.359000 3300 4345 1 chr7A.!!$F1 1045

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
835 1007 0.040514 CGATGTGCGCAAAAAGTCCA 60.041 50.000 14.0 3.88 0.00 4.02 F
1901 6161 0.322456 TTGGCTACTGTGATGGCACC 60.322 55.000 0.0 0.00 44.51 5.01 F
2202 6511 0.606673 GGGGGAGCTTGTTGACACTC 60.607 60.000 0.0 0.00 0.00 3.51 F
3900 12363 1.985159 TGCTCAGTGTGGTATTCCCTT 59.015 47.619 0.0 0.00 0.00 3.95 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1903 6163 1.537202 ACTTGCAAGTTGGAATCGCTC 59.463 47.619 26.36 0.00 35.21 5.03 R
3867 12329 1.764723 ACTGAGCATAGCTGGTGCATA 59.235 47.619 22.70 12.71 44.87 3.14 R
4023 12536 2.864343 CCTTAACCCGCTTACAATCTCG 59.136 50.000 0.00 0.00 0.00 4.04 R
5195 15646 0.179000 GATCACTGTCGCCATTCCCT 59.821 55.000 0.00 0.00 0.00 4.20 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
193 197 2.017623 GCCCTGTACGAGACTAGAGCA 61.018 57.143 0.00 0.00 0.00 4.26
229 233 3.500680 TGAAAGGCCGAATTGACTACAAC 59.499 43.478 0.00 0.00 38.90 3.32
237 241 5.313623 CCGAATTGACTACAACGCTAAAAG 58.686 41.667 0.00 0.00 38.90 2.27
242 246 7.724305 ATTGACTACAACGCTAAAAGAAAGA 57.276 32.000 0.00 0.00 38.90 2.52
243 247 6.520792 TGACTACAACGCTAAAAGAAAGAC 57.479 37.500 0.00 0.00 0.00 3.01
244 248 6.278363 TGACTACAACGCTAAAAGAAAGACT 58.722 36.000 0.00 0.00 0.00 3.24
245 249 7.428020 TGACTACAACGCTAAAAGAAAGACTA 58.572 34.615 0.00 0.00 0.00 2.59
246 250 7.380602 TGACTACAACGCTAAAAGAAAGACTAC 59.619 37.037 0.00 0.00 0.00 2.73
247 251 7.205297 ACTACAACGCTAAAAGAAAGACTACA 58.795 34.615 0.00 0.00 0.00 2.74
251 255 7.441458 ACAACGCTAAAAGAAAGACTACAATCT 59.559 33.333 0.00 0.00 0.00 2.40
252 256 7.352719 ACGCTAAAAGAAAGACTACAATCTG 57.647 36.000 0.00 0.00 0.00 2.90
255 259 8.113062 CGCTAAAAGAAAGACTACAATCTGATG 58.887 37.037 0.00 0.00 0.00 3.07
259 263 9.956720 AAAAGAAAGACTACAATCTGATGTTTG 57.043 29.630 0.00 0.00 34.75 2.93
260 264 8.908786 AAGAAAGACTACAATCTGATGTTTGA 57.091 30.769 0.00 0.00 34.75 2.69
261 265 8.316640 AGAAAGACTACAATCTGATGTTTGAC 57.683 34.615 0.00 0.00 34.75 3.18
262 266 7.933577 AGAAAGACTACAATCTGATGTTTGACA 59.066 33.333 0.00 0.00 34.75 3.58
263 267 7.664082 AAGACTACAATCTGATGTTTGACAG 57.336 36.000 0.00 0.00 34.75 3.51
264 268 6.997655 AGACTACAATCTGATGTTTGACAGA 58.002 36.000 0.00 0.00 45.19 3.41
269 273 4.743057 ATCTGATGTTTGACAGATCGGA 57.257 40.909 0.00 0.00 46.59 4.55
270 274 4.535526 TCTGATGTTTGACAGATCGGAA 57.464 40.909 0.00 0.00 38.08 4.30
271 275 4.498241 TCTGATGTTTGACAGATCGGAAG 58.502 43.478 0.00 0.00 38.08 3.46
272 276 3.599343 TGATGTTTGACAGATCGGAAGG 58.401 45.455 0.00 0.00 0.00 3.46
273 277 3.007940 TGATGTTTGACAGATCGGAAGGT 59.992 43.478 0.00 0.00 0.00 3.50
274 278 3.040147 TGTTTGACAGATCGGAAGGTC 57.960 47.619 0.00 0.00 43.12 3.85
275 279 2.367241 TGTTTGACAGATCGGAAGGTCA 59.633 45.455 0.00 1.81 45.97 4.02
276 280 3.181459 TGTTTGACAGATCGGAAGGTCAA 60.181 43.478 14.48 14.48 45.97 3.18
277 281 3.762407 TTGACAGATCGGAAGGTCAAA 57.238 42.857 15.51 4.88 45.97 2.69
278 282 3.762407 TGACAGATCGGAAGGTCAAAA 57.238 42.857 0.00 0.00 45.97 2.44
279 283 4.079980 TGACAGATCGGAAGGTCAAAAA 57.920 40.909 0.00 0.00 45.97 1.94
280 284 3.813166 TGACAGATCGGAAGGTCAAAAAC 59.187 43.478 0.00 0.00 45.97 2.43
281 285 2.806244 ACAGATCGGAAGGTCAAAAACG 59.194 45.455 0.00 0.00 45.97 3.60
282 286 2.806244 CAGATCGGAAGGTCAAAAACGT 59.194 45.455 0.00 0.00 45.97 3.99
283 287 2.806244 AGATCGGAAGGTCAAAAACGTG 59.194 45.455 0.00 0.00 45.97 4.49
284 288 2.312722 TCGGAAGGTCAAAAACGTGA 57.687 45.000 0.00 0.00 0.00 4.35
285 289 1.935199 TCGGAAGGTCAAAAACGTGAC 59.065 47.619 0.00 0.00 45.99 3.67
286 290 1.937899 CGGAAGGTCAAAAACGTGACT 59.062 47.619 5.40 0.00 45.98 3.41
287 291 2.286184 CGGAAGGTCAAAAACGTGACTG 60.286 50.000 5.40 0.00 45.98 3.51
288 292 2.940410 GGAAGGTCAAAAACGTGACTGA 59.060 45.455 5.40 0.00 45.98 3.41
289 293 3.002348 GGAAGGTCAAAAACGTGACTGAG 59.998 47.826 5.40 0.00 45.98 3.35
290 294 3.536956 AGGTCAAAAACGTGACTGAGA 57.463 42.857 5.40 0.00 45.98 3.27
291 295 3.195661 AGGTCAAAAACGTGACTGAGAC 58.804 45.455 5.40 1.70 45.98 3.36
292 296 2.287103 GGTCAAAAACGTGACTGAGACC 59.713 50.000 5.40 8.68 45.98 3.85
293 297 2.933906 GTCAAAAACGTGACTGAGACCA 59.066 45.455 0.00 0.00 43.82 4.02
294 298 3.560068 GTCAAAAACGTGACTGAGACCAT 59.440 43.478 0.00 0.00 43.82 3.55
295 299 4.748102 GTCAAAAACGTGACTGAGACCATA 59.252 41.667 0.00 0.00 43.82 2.74
296 300 4.748102 TCAAAAACGTGACTGAGACCATAC 59.252 41.667 0.00 0.00 0.00 2.39
297 301 4.602340 AAAACGTGACTGAGACCATACT 57.398 40.909 0.00 0.00 0.00 2.12
298 302 4.602340 AAACGTGACTGAGACCATACTT 57.398 40.909 0.00 0.00 0.00 2.24
299 303 5.717078 AAACGTGACTGAGACCATACTTA 57.283 39.130 0.00 0.00 0.00 2.24
300 304 5.717078 AACGTGACTGAGACCATACTTAA 57.283 39.130 0.00 0.00 0.00 1.85
301 305 5.717078 ACGTGACTGAGACCATACTTAAA 57.283 39.130 0.00 0.00 0.00 1.52
302 306 6.092955 ACGTGACTGAGACCATACTTAAAA 57.907 37.500 0.00 0.00 0.00 1.52
303 307 5.924825 ACGTGACTGAGACCATACTTAAAAC 59.075 40.000 0.00 0.00 0.00 2.43
304 308 6.157211 CGTGACTGAGACCATACTTAAAACT 58.843 40.000 0.00 0.00 0.00 2.66
305 309 6.308282 CGTGACTGAGACCATACTTAAAACTC 59.692 42.308 0.00 0.00 0.00 3.01
306 310 7.152645 GTGACTGAGACCATACTTAAAACTCA 58.847 38.462 0.00 0.00 0.00 3.41
308 312 6.654793 CTGAGACCATACTTAAAACTCAGC 57.345 41.667 0.00 0.00 41.63 4.26
309 313 6.360370 TGAGACCATACTTAAAACTCAGCT 57.640 37.500 0.00 0.00 0.00 4.24
310 314 7.476540 TGAGACCATACTTAAAACTCAGCTA 57.523 36.000 0.00 0.00 0.00 3.32
311 315 7.548097 TGAGACCATACTTAAAACTCAGCTAG 58.452 38.462 0.00 0.00 0.00 3.42
312 316 6.342111 AGACCATACTTAAAACTCAGCTAGC 58.658 40.000 6.62 6.62 0.00 3.42
313 317 6.155393 AGACCATACTTAAAACTCAGCTAGCT 59.845 38.462 12.68 12.68 0.00 3.32
314 318 6.109359 ACCATACTTAAAACTCAGCTAGCTG 58.891 40.000 34.48 34.48 44.86 4.24
337 341 4.755191 GTTTCAGCAAAACCGAAACTTC 57.245 40.909 0.00 0.00 43.23 3.01
338 342 4.421058 GTTTCAGCAAAACCGAAACTTCT 58.579 39.130 0.00 0.00 43.23 2.85
339 343 3.963383 TCAGCAAAACCGAAACTTCTC 57.037 42.857 0.00 0.00 0.00 2.87
340 344 3.541632 TCAGCAAAACCGAAACTTCTCT 58.458 40.909 0.00 0.00 0.00 3.10
341 345 3.945285 TCAGCAAAACCGAAACTTCTCTT 59.055 39.130 0.00 0.00 0.00 2.85
342 346 4.037690 CAGCAAAACCGAAACTTCTCTTG 58.962 43.478 0.00 0.00 0.00 3.02
343 347 3.066760 AGCAAAACCGAAACTTCTCTTGG 59.933 43.478 0.00 0.00 0.00 3.61
344 348 3.181490 GCAAAACCGAAACTTCTCTTGGT 60.181 43.478 0.00 0.00 0.00 3.67
345 349 4.676986 GCAAAACCGAAACTTCTCTTGGTT 60.677 41.667 0.00 0.00 41.22 3.67
347 351 5.654603 AAACCGAAACTTCTCTTGGTTTT 57.345 34.783 1.56 0.00 44.81 2.43
348 352 4.895224 ACCGAAACTTCTCTTGGTTTTC 57.105 40.909 0.00 0.00 36.04 2.29
349 353 4.524053 ACCGAAACTTCTCTTGGTTTTCT 58.476 39.130 0.00 0.00 36.04 2.52
350 354 4.948004 ACCGAAACTTCTCTTGGTTTTCTT 59.052 37.500 0.00 0.00 36.04 2.52
351 355 5.163652 ACCGAAACTTCTCTTGGTTTTCTTG 60.164 40.000 0.00 0.00 36.04 3.02
352 356 4.735338 CGAAACTTCTCTTGGTTTTCTTGC 59.265 41.667 0.00 0.00 36.04 4.01
353 357 3.971032 ACTTCTCTTGGTTTTCTTGCG 57.029 42.857 0.00 0.00 0.00 4.85
354 358 3.279434 ACTTCTCTTGGTTTTCTTGCGT 58.721 40.909 0.00 0.00 0.00 5.24
355 359 4.448210 ACTTCTCTTGGTTTTCTTGCGTA 58.552 39.130 0.00 0.00 0.00 4.42
356 360 4.511826 ACTTCTCTTGGTTTTCTTGCGTAG 59.488 41.667 0.00 0.00 0.00 3.51
357 361 4.067972 TCTCTTGGTTTTCTTGCGTAGT 57.932 40.909 0.00 0.00 0.00 2.73
358 362 5.204409 TCTCTTGGTTTTCTTGCGTAGTA 57.796 39.130 0.00 0.00 0.00 1.82
359 363 5.790593 TCTCTTGGTTTTCTTGCGTAGTAT 58.209 37.500 0.00 0.00 0.00 2.12
360 364 6.927416 TCTCTTGGTTTTCTTGCGTAGTATA 58.073 36.000 0.00 0.00 0.00 1.47
361 365 7.380536 TCTCTTGGTTTTCTTGCGTAGTATAA 58.619 34.615 0.00 0.00 0.00 0.98
362 366 7.544566 TCTCTTGGTTTTCTTGCGTAGTATAAG 59.455 37.037 0.00 0.00 0.00 1.73
363 367 7.380536 TCTTGGTTTTCTTGCGTAGTATAAGA 58.619 34.615 0.00 0.00 0.00 2.10
364 368 7.874016 TCTTGGTTTTCTTGCGTAGTATAAGAA 59.126 33.333 0.00 0.00 38.32 2.52
365 369 8.556213 TTGGTTTTCTTGCGTAGTATAAGAAT 57.444 30.769 0.00 0.00 39.40 2.40
366 370 8.556213 TGGTTTTCTTGCGTAGTATAAGAATT 57.444 30.769 0.00 0.00 39.40 2.17
367 371 9.005777 TGGTTTTCTTGCGTAGTATAAGAATTT 57.994 29.630 0.00 0.00 39.40 1.82
368 372 9.836076 GGTTTTCTTGCGTAGTATAAGAATTTT 57.164 29.630 0.00 0.00 39.40 1.82
376 380 8.875803 TGCGTAGTATAAGAATTTTACTTGTGG 58.124 33.333 0.00 0.00 39.32 4.17
377 381 8.876790 GCGTAGTATAAGAATTTTACTTGTGGT 58.123 33.333 0.00 0.00 39.32 4.16
386 390 8.232913 AGAATTTTACTTGTGGTTGTACATGT 57.767 30.769 2.69 2.69 40.61 3.21
387 391 8.349983 AGAATTTTACTTGTGGTTGTACATGTC 58.650 33.333 0.00 0.00 39.04 3.06
388 392 7.575414 ATTTTACTTGTGGTTGTACATGTCA 57.425 32.000 0.00 0.00 39.04 3.58
389 393 7.392494 TTTTACTTGTGGTTGTACATGTCAA 57.608 32.000 0.00 4.05 39.04 3.18
390 394 4.893424 ACTTGTGGTTGTACATGTCAAC 57.107 40.909 22.44 22.44 42.76 3.18
397 401 4.568152 GTTGTACATGTCAACCTTTGCT 57.432 40.909 21.05 0.00 39.13 3.91
398 402 4.932146 GTTGTACATGTCAACCTTTGCTT 58.068 39.130 21.05 0.00 39.13 3.91
399 403 4.566545 TGTACATGTCAACCTTTGCTTG 57.433 40.909 0.00 0.00 0.00 4.01
400 404 3.951037 TGTACATGTCAACCTTTGCTTGT 59.049 39.130 0.00 0.00 33.39 3.16
401 405 4.400884 TGTACATGTCAACCTTTGCTTGTT 59.599 37.500 0.00 0.00 32.21 2.83
402 406 3.784338 ACATGTCAACCTTTGCTTGTTG 58.216 40.909 0.00 0.00 42.46 3.33
403 407 3.195396 ACATGTCAACCTTTGCTTGTTGT 59.805 39.130 0.00 0.00 41.92 3.32
404 408 3.502191 TGTCAACCTTTGCTTGTTGTC 57.498 42.857 0.00 0.00 41.92 3.18
405 409 2.822561 TGTCAACCTTTGCTTGTTGTCA 59.177 40.909 0.00 0.00 41.92 3.58
406 410 3.446873 TGTCAACCTTTGCTTGTTGTCAT 59.553 39.130 0.00 0.00 41.92 3.06
407 411 4.642437 TGTCAACCTTTGCTTGTTGTCATA 59.358 37.500 0.00 0.00 41.92 2.15
408 412 5.215160 GTCAACCTTTGCTTGTTGTCATAG 58.785 41.667 0.00 0.00 41.92 2.23
409 413 5.008613 GTCAACCTTTGCTTGTTGTCATAGA 59.991 40.000 0.00 0.00 41.92 1.98
410 414 5.592282 TCAACCTTTGCTTGTTGTCATAGAA 59.408 36.000 0.00 0.00 41.92 2.10
411 415 6.265196 TCAACCTTTGCTTGTTGTCATAGAAT 59.735 34.615 0.00 0.00 41.92 2.40
412 416 6.017400 ACCTTTGCTTGTTGTCATAGAATG 57.983 37.500 0.00 0.00 0.00 2.67
413 417 5.047802 ACCTTTGCTTGTTGTCATAGAATGG 60.048 40.000 0.00 0.00 0.00 3.16
414 418 4.439305 TTGCTTGTTGTCATAGAATGGC 57.561 40.909 0.00 0.00 34.88 4.40
415 419 3.419943 TGCTTGTTGTCATAGAATGGCA 58.580 40.909 0.00 0.00 44.28 4.92
432 436 3.374506 CAAGGATGCTCGATGCTGA 57.625 52.632 8.07 0.00 43.37 4.26
433 437 1.660167 CAAGGATGCTCGATGCTGAA 58.340 50.000 8.07 0.00 43.37 3.02
434 438 2.011947 CAAGGATGCTCGATGCTGAAA 58.988 47.619 8.07 0.00 43.37 2.69
435 439 2.617308 CAAGGATGCTCGATGCTGAAAT 59.383 45.455 8.07 0.00 43.37 2.17
436 440 2.492012 AGGATGCTCGATGCTGAAATC 58.508 47.619 8.07 3.52 43.37 2.17
437 441 2.104451 AGGATGCTCGATGCTGAAATCT 59.896 45.455 8.07 0.00 43.37 2.40
438 442 2.223611 GGATGCTCGATGCTGAAATCTG 59.776 50.000 8.07 0.00 43.37 2.90
439 443 2.678471 TGCTCGATGCTGAAATCTGA 57.322 45.000 8.07 0.00 43.37 3.27
440 444 3.189618 TGCTCGATGCTGAAATCTGAT 57.810 42.857 8.07 0.00 43.37 2.90
441 445 3.538591 TGCTCGATGCTGAAATCTGATT 58.461 40.909 0.00 0.00 43.37 2.57
442 446 4.696455 TGCTCGATGCTGAAATCTGATTA 58.304 39.130 2.85 0.00 43.37 1.75
443 447 5.303165 TGCTCGATGCTGAAATCTGATTAT 58.697 37.500 2.85 0.00 43.37 1.28
444 448 5.761726 TGCTCGATGCTGAAATCTGATTATT 59.238 36.000 2.85 0.00 43.37 1.40
445 449 6.261603 TGCTCGATGCTGAAATCTGATTATTT 59.738 34.615 2.85 0.00 43.37 1.40
446 450 6.796072 GCTCGATGCTGAAATCTGATTATTTC 59.204 38.462 2.85 0.00 43.28 2.17
477 481 3.119137 GCCACATCAGGAATACCAAAACC 60.119 47.826 0.00 0.00 38.94 3.27
478 482 4.344104 CCACATCAGGAATACCAAAACCT 58.656 43.478 0.00 0.00 38.94 3.50
479 483 4.399303 CCACATCAGGAATACCAAAACCTC 59.601 45.833 0.00 0.00 38.94 3.85
494 498 1.073199 CCTCGGGCTCTGTTTTGGT 59.927 57.895 0.00 0.00 0.00 3.67
516 522 5.936372 GGTTTTCTACCTCGTATTTGAACCT 59.064 40.000 0.00 0.00 44.10 3.50
560 567 4.602340 TCTTCACACCACTCCTTACTTC 57.398 45.455 0.00 0.00 0.00 3.01
585 592 1.302366 TCGCAAGCATATGCAGAAGG 58.698 50.000 28.62 13.70 46.76 3.46
597 612 1.565759 TGCAGAAGGAGGCCATATTGT 59.434 47.619 5.01 0.00 0.00 2.71
617 632 0.680280 GCACGACTCTCCTCCCTGTA 60.680 60.000 0.00 0.00 0.00 2.74
620 635 2.761208 CACGACTCTCCTCCCTGTATTT 59.239 50.000 0.00 0.00 0.00 1.40
631 646 1.561542 CCCTGTATTTGTCCTCCTGCT 59.438 52.381 0.00 0.00 0.00 4.24
653 668 3.951775 TTGGTTTGTTTCTGCAACTGT 57.048 38.095 0.00 0.00 36.21 3.55
659 674 2.929641 TGTTTCTGCAACTGTGATGGA 58.070 42.857 0.00 0.00 36.21 3.41
675 690 2.577606 TGGACACCCAATAACACCTG 57.422 50.000 0.00 0.00 40.09 4.00
748 770 4.498177 GGTTCTCTTCTTGGTCTGCAAAAC 60.498 45.833 0.00 0.00 0.00 2.43
756 778 0.307760 GGTCTGCAAAACTCCACACG 59.692 55.000 0.00 0.00 0.00 4.49
788 810 8.843262 CAATAGGAATGCTGAATAATCAACTCA 58.157 33.333 0.00 0.00 34.49 3.41
795 820 6.573434 TGCTGAATAATCAACTCATACGACT 58.427 36.000 0.00 0.00 34.49 4.18
835 1007 0.040514 CGATGTGCGCAAAAAGTCCA 60.041 50.000 14.00 3.88 0.00 4.02
842 1014 3.425193 GTGCGCAAAAAGTCCAATGTAAG 59.575 43.478 14.00 0.00 0.00 2.34
852 1024 3.879295 AGTCCAATGTAAGCAATCCGATG 59.121 43.478 0.00 0.00 0.00 3.84
871 1100 6.834451 TCCGATGAATAGGTAGAGAAAAGTCT 59.166 38.462 0.00 0.00 36.55 3.24
887 1116 1.202698 AGTCTGAGCAGTGTTTCCACC 60.203 52.381 0.00 0.00 42.88 4.61
888 1117 0.836606 TCTGAGCAGTGTTTCCACCA 59.163 50.000 0.00 0.00 42.88 4.17
907 1151 9.444600 TTCCACCATCTAGTAAACAATCTAAAC 57.555 33.333 0.00 0.00 0.00 2.01
908 1152 8.044908 TCCACCATCTAGTAAACAATCTAAACC 58.955 37.037 0.00 0.00 0.00 3.27
909 1153 7.827236 CCACCATCTAGTAAACAATCTAAACCA 59.173 37.037 0.00 0.00 0.00 3.67
910 1154 9.396022 CACCATCTAGTAAACAATCTAAACCAT 57.604 33.333 0.00 0.00 0.00 3.55
911 1155 9.614792 ACCATCTAGTAAACAATCTAAACCATC 57.385 33.333 0.00 0.00 0.00 3.51
912 1156 9.838339 CCATCTAGTAAACAATCTAAACCATCT 57.162 33.333 0.00 0.00 0.00 2.90
923 1167 9.911788 ACAATCTAAACCATCTTCATATGTTCT 57.088 29.630 1.90 0.00 0.00 3.01
927 1171 9.213777 TCTAAACCATCTTCATATGTTCTACCT 57.786 33.333 1.90 0.00 0.00 3.08
928 1172 9.838339 CTAAACCATCTTCATATGTTCTACCTT 57.162 33.333 1.90 0.00 0.00 3.50
929 1173 8.738645 AAACCATCTTCATATGTTCTACCTTC 57.261 34.615 1.90 0.00 0.00 3.46
930 1174 7.682787 ACCATCTTCATATGTTCTACCTTCT 57.317 36.000 1.90 0.00 0.00 2.85
931 1175 8.095452 ACCATCTTCATATGTTCTACCTTCTT 57.905 34.615 1.90 0.00 0.00 2.52
932 1176 8.207545 ACCATCTTCATATGTTCTACCTTCTTC 58.792 37.037 1.90 0.00 0.00 2.87
933 1177 7.659390 CCATCTTCATATGTTCTACCTTCTTCC 59.341 40.741 1.90 0.00 0.00 3.46
934 1178 7.979786 TCTTCATATGTTCTACCTTCTTCCT 57.020 36.000 1.90 0.00 0.00 3.36
935 1179 8.380742 TCTTCATATGTTCTACCTTCTTCCTT 57.619 34.615 1.90 0.00 0.00 3.36
936 1180 8.826765 TCTTCATATGTTCTACCTTCTTCCTTT 58.173 33.333 1.90 0.00 0.00 3.11
937 1181 9.454859 CTTCATATGTTCTACCTTCTTCCTTTT 57.545 33.333 1.90 0.00 0.00 2.27
938 1182 8.792830 TCATATGTTCTACCTTCTTCCTTTTG 57.207 34.615 1.90 0.00 0.00 2.44
939 1183 5.966742 ATGTTCTACCTTCTTCCTTTTGC 57.033 39.130 0.00 0.00 0.00 3.68
940 1184 5.048846 TGTTCTACCTTCTTCCTTTTGCT 57.951 39.130 0.00 0.00 0.00 3.91
941 1185 5.063880 TGTTCTACCTTCTTCCTTTTGCTC 58.936 41.667 0.00 0.00 0.00 4.26
942 1186 4.974645 TCTACCTTCTTCCTTTTGCTCA 57.025 40.909 0.00 0.00 0.00 4.26
943 1187 4.642429 TCTACCTTCTTCCTTTTGCTCAC 58.358 43.478 0.00 0.00 0.00 3.51
957 1201 6.016777 CCTTTTGCTCACCCATCTTCATATAC 60.017 42.308 0.00 0.00 0.00 1.47
1046 1290 7.121907 AGCTTTTATCCTCCTGTTCTTGATTTC 59.878 37.037 0.00 0.00 0.00 2.17
1054 1298 3.192212 CCTGTTCTTGATTTCCTTCTGCC 59.808 47.826 0.00 0.00 0.00 4.85
1097 1341 1.057851 ACAAAACCACTCTCCCCCGA 61.058 55.000 0.00 0.00 0.00 5.14
1103 1347 2.052690 CACTCTCCCCCGACGACAT 61.053 63.158 0.00 0.00 0.00 3.06
1107 1351 3.000819 TCCCCCGACGACATGCTT 61.001 61.111 0.00 0.00 0.00 3.91
1241 1485 2.975799 GAACCGCGACAGCCCAAA 60.976 61.111 8.23 0.00 41.18 3.28
1257 1501 2.242043 CCAAATCACCAGCAGTTCCTT 58.758 47.619 0.00 0.00 0.00 3.36
1292 1536 5.545063 TGTGACCAACAACTCTGATCTTA 57.455 39.130 0.00 0.00 35.24 2.10
1304 1548 6.532988 ACTCTGATCTTACCTTGTTAGACC 57.467 41.667 0.00 0.00 0.00 3.85
1526 1804 2.592993 CCTTGTCGCTTGGAGGGGA 61.593 63.158 0.00 0.00 0.00 4.81
1654 1932 2.512745 TGGTGCGCTTGTCAACGT 60.513 55.556 9.73 0.00 0.00 3.99
1901 6161 0.322456 TTGGCTACTGTGATGGCACC 60.322 55.000 0.00 0.00 44.51 5.01
1903 6163 1.815421 GCTACTGTGATGGCACCGG 60.815 63.158 0.00 0.00 44.51 5.28
2202 6511 0.606673 GGGGGAGCTTGTTGACACTC 60.607 60.000 0.00 0.00 0.00 3.51
2325 6674 5.252547 TGCAGTTAGATTGATTGCCTGTTA 58.747 37.500 0.00 0.00 33.98 2.41
2653 7532 8.587950 CAGTTCATCAGAGTTTAGTCGATTTAC 58.412 37.037 0.00 0.00 0.00 2.01
2844 7917 8.642432 TGACATTATTCTCTTGGTGGACTATAG 58.358 37.037 0.00 0.00 0.00 1.31
2847 7920 9.650539 CATTATTCTCTTGGTGGACTATAGATG 57.349 37.037 6.78 0.00 0.00 2.90
3212 9812 4.873827 GGAAAAGGTGGTTTTGGAAAAGTC 59.126 41.667 0.00 0.00 38.54 3.01
3370 9981 2.369668 TGGATCTGGGAAAGGGGTTA 57.630 50.000 0.00 0.00 0.00 2.85
3683 12145 4.517075 GTCATTAAAGGGATAGCAAGAGGC 59.483 45.833 0.00 0.00 45.30 4.70
3699 12161 3.454858 AGAGGCCTTCTTTATCTCCACA 58.545 45.455 6.77 0.00 29.61 4.17
3769 12231 5.697633 ACATCTTGTTGGATGCAAAAATGAC 59.302 36.000 9.65 0.00 44.81 3.06
3773 12235 3.640498 TGTTGGATGCAAAAATGACTCCA 59.360 39.130 0.00 0.00 0.00 3.86
3820 12282 3.173965 AGGATCTTTGGAGGAAACGAGA 58.826 45.455 0.00 0.00 0.00 4.04
3896 12359 3.806521 CAGCTATGCTCAGTGTGGTATTC 59.193 47.826 0.00 0.00 36.40 1.75
3900 12363 1.985159 TGCTCAGTGTGGTATTCCCTT 59.015 47.619 0.00 0.00 0.00 3.95
3901 12364 3.178046 TGCTCAGTGTGGTATTCCCTTA 58.822 45.455 0.00 0.00 0.00 2.69
3902 12365 3.585289 TGCTCAGTGTGGTATTCCCTTAA 59.415 43.478 0.00 0.00 0.00 1.85
3903 12366 4.042311 TGCTCAGTGTGGTATTCCCTTAAA 59.958 41.667 0.00 0.00 0.00 1.52
3904 12367 4.636206 GCTCAGTGTGGTATTCCCTTAAAG 59.364 45.833 0.00 0.00 0.00 1.85
3909 12372 8.701895 TCAGTGTGGTATTCCCTTAAAGTATAG 58.298 37.037 0.00 0.00 0.00 1.31
3972 12485 3.006217 TGTCTCCTGAATATGCGATGGAG 59.994 47.826 9.69 9.69 41.57 3.86
4023 12536 0.315251 GCTTTGGGGTTCTGCTGTTC 59.685 55.000 0.00 0.00 0.00 3.18
4133 12652 9.602568 AACGTTTTAATTTCCAATGGTTTAAGT 57.397 25.926 0.00 0.00 0.00 2.24
4219 12747 1.856629 ATGCAAGGGAATTGGTGGAG 58.143 50.000 0.00 0.00 39.47 3.86
4237 12765 2.344950 GAGTCGTCGGTTGTAGAGAGA 58.655 52.381 0.00 0.00 0.00 3.10
4364 12897 1.302511 GAAACAGCTCCGCTTCCCA 60.303 57.895 0.00 0.00 36.40 4.37
4372 12905 0.321671 CTCCGCTTCCCAGAGAAACA 59.678 55.000 0.00 0.00 32.88 2.83
4410 12943 2.632377 GGAATCATGAAGCCGAAGACA 58.368 47.619 0.00 0.00 0.00 3.41
4433 12966 5.767168 CAGGAGAAAATACATGGGAAGATCC 59.233 44.000 0.00 0.00 35.23 3.36
4467 13000 4.459330 TGAAATGACCATCACAACACTGA 58.541 39.130 0.00 0.00 0.00 3.41
4475 13008 1.116308 TCACAACACTGAAGGGACGA 58.884 50.000 0.00 0.00 0.00 4.20
4488 13021 7.910162 CACTGAAGGGACGATAAATGTTTATTG 59.090 37.037 9.99 9.99 39.41 1.90
4493 13026 8.217131 AGGGACGATAAATGTTTATTGGTTAC 57.783 34.615 14.25 7.27 38.35 2.50
4494 13027 7.830201 AGGGACGATAAATGTTTATTGGTTACA 59.170 33.333 14.25 0.00 38.35 2.41
4566 13101 5.726980 ACCAATTCATGTTTGCATACACT 57.273 34.783 12.37 0.00 33.30 3.55
4567 13102 5.472148 ACCAATTCATGTTTGCATACACTG 58.528 37.500 12.37 11.48 33.30 3.66
4568 13103 5.010922 ACCAATTCATGTTTGCATACACTGT 59.989 36.000 12.37 0.00 33.30 3.55
4575 13122 5.778161 TGTTTGCATACACTGTCGAATAG 57.222 39.130 5.83 0.00 0.00 1.73
4578 13125 6.593770 TGTTTGCATACACTGTCGAATAGATT 59.406 34.615 5.83 0.00 0.00 2.40
4582 13129 6.035975 TGCATACACTGTCGAATAGATTGTTG 59.964 38.462 5.07 3.70 0.00 3.33
4588 13135 5.989168 ACTGTCGAATAGATTGTTGTCAACA 59.011 36.000 14.48 14.48 40.21 3.33
4591 13138 4.081761 CGAATAGATTGTTGTCAACACGC 58.918 43.478 17.99 12.44 41.97 5.34
4592 13139 4.376920 CGAATAGATTGTTGTCAACACGCA 60.377 41.667 17.99 4.48 41.97 5.24
4593 13140 5.431420 AATAGATTGTTGTCAACACGCAA 57.569 34.783 17.99 4.10 41.97 4.85
4703 13975 1.409427 CCAGGGACGACTCCAAGATAC 59.591 57.143 0.00 0.00 38.52 2.24
5102 15549 2.343758 GGAGCACAGAAGACGGCA 59.656 61.111 0.00 0.00 0.00 5.69
5195 15646 1.816074 GCCATTAACCGGACAAGACA 58.184 50.000 9.46 0.00 0.00 3.41
5259 16557 2.350895 CGACCCCATGACCAAGCA 59.649 61.111 0.00 0.00 0.00 3.91
5400 16699 1.841277 AGCCGGATTACCATTGTACCA 59.159 47.619 5.05 0.00 35.59 3.25
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
98 99 3.950395 GCTACATGGGCTTTCTTCATCTT 59.050 43.478 0.00 0.00 0.00 2.40
99 100 3.549794 GCTACATGGGCTTTCTTCATCT 58.450 45.455 0.00 0.00 0.00 2.90
100 101 2.620585 GGCTACATGGGCTTTCTTCATC 59.379 50.000 11.62 0.00 0.00 2.92
101 102 2.659428 GGCTACATGGGCTTTCTTCAT 58.341 47.619 11.62 0.00 0.00 2.57
102 103 1.340991 GGGCTACATGGGCTTTCTTCA 60.341 52.381 11.62 0.00 0.00 3.02
103 104 1.340991 TGGGCTACATGGGCTTTCTTC 60.341 52.381 11.62 0.00 0.00 2.87
105 106 0.257039 CTGGGCTACATGGGCTTTCT 59.743 55.000 11.62 0.00 0.00 2.52
106 107 1.387295 GCTGGGCTACATGGGCTTTC 61.387 60.000 11.62 4.55 0.00 2.62
153 157 1.754803 CGTAGCCCAGGTGAATGAGTA 59.245 52.381 0.00 0.00 0.00 2.59
193 197 1.078759 CTTTCAATCCGAGCGACGCT 61.079 55.000 24.77 24.77 43.88 5.07
202 206 1.742831 TCAATTCGGCCTTTCAATCCG 59.257 47.619 0.00 0.00 44.16 4.18
220 224 6.278363 AGTCTTTCTTTTAGCGTTGTAGTCA 58.722 36.000 0.00 0.00 0.00 3.41
229 233 7.582435 TCAGATTGTAGTCTTTCTTTTAGCG 57.418 36.000 0.00 0.00 0.00 4.26
237 241 8.087982 TGTCAAACATCAGATTGTAGTCTTTC 57.912 34.615 0.00 0.00 0.00 2.62
242 246 6.533012 CGATCTGTCAAACATCAGATTGTAGT 59.467 38.462 8.67 0.00 46.92 2.73
243 247 6.019237 CCGATCTGTCAAACATCAGATTGTAG 60.019 42.308 16.27 7.34 46.92 2.74
244 248 5.812127 CCGATCTGTCAAACATCAGATTGTA 59.188 40.000 16.27 0.00 46.92 2.41
245 249 4.633126 CCGATCTGTCAAACATCAGATTGT 59.367 41.667 16.27 0.00 46.92 2.71
246 250 4.872124 TCCGATCTGTCAAACATCAGATTG 59.128 41.667 12.70 12.70 46.92 2.67
247 251 5.089970 TCCGATCTGTCAAACATCAGATT 57.910 39.130 8.67 0.00 46.92 2.40
251 255 3.007940 ACCTTCCGATCTGTCAAACATCA 59.992 43.478 0.00 0.00 0.00 3.07
252 256 3.600388 ACCTTCCGATCTGTCAAACATC 58.400 45.455 0.00 0.00 0.00 3.06
255 259 3.040147 TGACCTTCCGATCTGTCAAAC 57.960 47.619 0.00 0.00 34.98 2.93
257 261 3.762407 TTTGACCTTCCGATCTGTCAA 57.238 42.857 0.00 0.00 43.73 3.18
258 262 3.762407 TTTTGACCTTCCGATCTGTCA 57.238 42.857 0.00 0.00 36.04 3.58
259 263 3.120649 CGTTTTTGACCTTCCGATCTGTC 60.121 47.826 0.00 0.00 0.00 3.51
260 264 2.806244 CGTTTTTGACCTTCCGATCTGT 59.194 45.455 0.00 0.00 0.00 3.41
261 265 2.806244 ACGTTTTTGACCTTCCGATCTG 59.194 45.455 0.00 0.00 0.00 2.90
262 266 2.806244 CACGTTTTTGACCTTCCGATCT 59.194 45.455 0.00 0.00 0.00 2.75
263 267 2.803956 TCACGTTTTTGACCTTCCGATC 59.196 45.455 0.00 0.00 0.00 3.69
264 268 2.546789 GTCACGTTTTTGACCTTCCGAT 59.453 45.455 0.00 0.00 40.15 4.18
265 269 1.935199 GTCACGTTTTTGACCTTCCGA 59.065 47.619 0.00 0.00 40.15 4.55
266 270 1.937899 AGTCACGTTTTTGACCTTCCG 59.062 47.619 0.66 0.00 46.14 4.30
267 271 2.940410 TCAGTCACGTTTTTGACCTTCC 59.060 45.455 0.66 0.00 46.14 3.46
268 272 3.869246 TCTCAGTCACGTTTTTGACCTTC 59.131 43.478 0.66 0.00 46.14 3.46
269 273 3.621715 GTCTCAGTCACGTTTTTGACCTT 59.378 43.478 0.66 0.00 46.14 3.50
270 274 3.195661 GTCTCAGTCACGTTTTTGACCT 58.804 45.455 0.66 0.00 46.14 3.85
271 275 2.287103 GGTCTCAGTCACGTTTTTGACC 59.713 50.000 0.66 3.94 46.14 4.02
272 276 2.933906 TGGTCTCAGTCACGTTTTTGAC 59.066 45.455 0.00 0.00 45.45 3.18
273 277 3.254470 TGGTCTCAGTCACGTTTTTGA 57.746 42.857 0.00 0.00 0.00 2.69
274 278 4.750098 AGTATGGTCTCAGTCACGTTTTTG 59.250 41.667 0.00 0.00 0.00 2.44
275 279 4.957296 AGTATGGTCTCAGTCACGTTTTT 58.043 39.130 0.00 0.00 0.00 1.94
276 280 4.602340 AGTATGGTCTCAGTCACGTTTT 57.398 40.909 0.00 0.00 0.00 2.43
277 281 4.602340 AAGTATGGTCTCAGTCACGTTT 57.398 40.909 0.00 0.00 0.00 3.60
278 282 5.717078 TTAAGTATGGTCTCAGTCACGTT 57.283 39.130 0.00 0.00 0.00 3.99
279 283 5.717078 TTTAAGTATGGTCTCAGTCACGT 57.283 39.130 0.00 0.00 0.00 4.49
280 284 6.157211 AGTTTTAAGTATGGTCTCAGTCACG 58.843 40.000 0.00 0.00 0.00 4.35
281 285 7.152645 TGAGTTTTAAGTATGGTCTCAGTCAC 58.847 38.462 0.00 0.00 0.00 3.67
282 286 7.297936 TGAGTTTTAAGTATGGTCTCAGTCA 57.702 36.000 0.00 0.00 0.00 3.41
283 287 6.311690 GCTGAGTTTTAAGTATGGTCTCAGTC 59.688 42.308 16.74 8.59 44.92 3.51
284 288 6.014156 AGCTGAGTTTTAAGTATGGTCTCAGT 60.014 38.462 16.74 5.39 44.92 3.41
285 289 6.402222 AGCTGAGTTTTAAGTATGGTCTCAG 58.598 40.000 12.88 12.88 45.49 3.35
286 290 6.360370 AGCTGAGTTTTAAGTATGGTCTCA 57.640 37.500 0.00 0.00 0.00 3.27
287 291 6.477360 GCTAGCTGAGTTTTAAGTATGGTCTC 59.523 42.308 7.70 0.00 0.00 3.36
288 292 6.155393 AGCTAGCTGAGTTTTAAGTATGGTCT 59.845 38.462 18.57 0.00 0.00 3.85
289 293 6.256757 CAGCTAGCTGAGTTTTAAGTATGGTC 59.743 42.308 36.47 0.00 46.30 4.02
290 294 6.070767 TCAGCTAGCTGAGTTTTAAGTATGGT 60.071 38.462 37.64 0.00 46.80 3.55
291 295 6.341316 TCAGCTAGCTGAGTTTTAAGTATGG 58.659 40.000 37.64 11.75 46.80 2.74
312 316 3.691049 TTCGGTTTTGCTGAAACTCAG 57.309 42.857 13.41 0.00 46.90 3.35
317 321 4.398044 AGAGAAGTTTCGGTTTTGCTGAAA 59.602 37.500 0.00 0.00 46.81 2.69
318 322 3.945285 AGAGAAGTTTCGGTTTTGCTGAA 59.055 39.130 0.00 0.00 40.47 3.02
319 323 3.541632 AGAGAAGTTTCGGTTTTGCTGA 58.458 40.909 0.00 0.00 0.00 4.26
320 324 3.971032 AGAGAAGTTTCGGTTTTGCTG 57.029 42.857 0.00 0.00 0.00 4.41
321 325 3.066760 CCAAGAGAAGTTTCGGTTTTGCT 59.933 43.478 0.00 0.00 0.00 3.91
322 326 3.181490 ACCAAGAGAAGTTTCGGTTTTGC 60.181 43.478 0.00 0.00 0.00 3.68
323 327 4.632538 ACCAAGAGAAGTTTCGGTTTTG 57.367 40.909 0.00 0.00 0.00 2.44
324 328 5.654603 AAACCAAGAGAAGTTTCGGTTTT 57.345 34.783 0.00 0.00 42.53 2.43
325 329 5.417894 AGAAAACCAAGAGAAGTTTCGGTTT 59.582 36.000 0.00 0.00 46.01 3.27
326 330 4.948004 AGAAAACCAAGAGAAGTTTCGGTT 59.052 37.500 0.00 0.00 38.35 4.44
327 331 4.524053 AGAAAACCAAGAGAAGTTTCGGT 58.476 39.130 0.00 0.00 35.19 4.69
328 332 5.273944 CAAGAAAACCAAGAGAAGTTTCGG 58.726 41.667 0.00 0.00 35.19 4.30
329 333 4.735338 GCAAGAAAACCAAGAGAAGTTTCG 59.265 41.667 0.00 0.00 35.19 3.46
330 334 4.735338 CGCAAGAAAACCAAGAGAAGTTTC 59.265 41.667 0.00 0.00 35.19 2.78
331 335 4.157840 ACGCAAGAAAACCAAGAGAAGTTT 59.842 37.500 0.00 0.00 43.62 2.66
332 336 3.694566 ACGCAAGAAAACCAAGAGAAGTT 59.305 39.130 0.00 0.00 43.62 2.66
333 337 3.279434 ACGCAAGAAAACCAAGAGAAGT 58.721 40.909 0.00 0.00 43.62 3.01
334 338 3.971032 ACGCAAGAAAACCAAGAGAAG 57.029 42.857 0.00 0.00 43.62 2.85
335 339 4.448210 ACTACGCAAGAAAACCAAGAGAA 58.552 39.130 0.00 0.00 43.62 2.87
336 340 4.067972 ACTACGCAAGAAAACCAAGAGA 57.932 40.909 0.00 0.00 43.62 3.10
337 341 7.544566 TCTTATACTACGCAAGAAAACCAAGAG 59.455 37.037 0.00 0.00 43.62 2.85
338 342 7.380536 TCTTATACTACGCAAGAAAACCAAGA 58.619 34.615 0.00 0.00 43.62 3.02
339 343 7.591006 TCTTATACTACGCAAGAAAACCAAG 57.409 36.000 0.00 0.00 43.62 3.61
340 344 7.966246 TTCTTATACTACGCAAGAAAACCAA 57.034 32.000 0.00 0.00 35.83 3.67
341 345 8.556213 AATTCTTATACTACGCAAGAAAACCA 57.444 30.769 0.62 0.00 40.58 3.67
342 346 9.836076 AAAATTCTTATACTACGCAAGAAAACC 57.164 29.630 0.62 0.00 40.58 3.27
350 354 8.875803 CCACAAGTAAAATTCTTATACTACGCA 58.124 33.333 0.00 0.00 30.03 5.24
351 355 8.876790 ACCACAAGTAAAATTCTTATACTACGC 58.123 33.333 0.00 0.00 30.03 4.42
360 364 8.691797 ACATGTACAACCACAAGTAAAATTCTT 58.308 29.630 0.00 0.00 29.13 2.52
361 365 8.232913 ACATGTACAACCACAAGTAAAATTCT 57.767 30.769 0.00 0.00 29.13 2.40
362 366 8.132362 TGACATGTACAACCACAAGTAAAATTC 58.868 33.333 0.00 0.00 30.96 2.17
363 367 8.001881 TGACATGTACAACCACAAGTAAAATT 57.998 30.769 0.00 0.00 30.96 1.82
364 368 7.575414 TGACATGTACAACCACAAGTAAAAT 57.425 32.000 0.00 0.00 30.96 1.82
365 369 7.251994 GTTGACATGTACAACCACAAGTAAAA 58.748 34.615 21.05 0.00 40.86 1.52
366 370 6.787225 GTTGACATGTACAACCACAAGTAAA 58.213 36.000 21.05 0.00 40.86 2.01
367 371 6.366315 GTTGACATGTACAACCACAAGTAA 57.634 37.500 21.05 0.00 40.86 2.24
368 372 5.994887 GTTGACATGTACAACCACAAGTA 57.005 39.130 21.05 0.00 40.86 2.24
369 373 4.893424 GTTGACATGTACAACCACAAGT 57.107 40.909 21.05 0.00 40.86 3.16
376 380 4.568152 AGCAAAGGTTGACATGTACAAC 57.432 40.909 22.44 22.44 44.40 3.32
377 381 4.400884 ACAAGCAAAGGTTGACATGTACAA 59.599 37.500 14.94 2.35 42.72 2.41
378 382 3.951037 ACAAGCAAAGGTTGACATGTACA 59.049 39.130 14.94 0.00 42.72 2.90
379 383 4.568152 ACAAGCAAAGGTTGACATGTAC 57.432 40.909 14.94 0.00 42.72 2.90
380 384 4.400884 ACAACAAGCAAAGGTTGACATGTA 59.599 37.500 14.94 0.00 45.50 2.29
381 385 3.195396 ACAACAAGCAAAGGTTGACATGT 59.805 39.130 14.94 0.00 45.50 3.21
382 386 3.784338 ACAACAAGCAAAGGTTGACATG 58.216 40.909 14.94 12.11 45.50 3.21
383 387 3.446873 TGACAACAAGCAAAGGTTGACAT 59.553 39.130 14.94 0.70 45.50 3.06
384 388 2.822561 TGACAACAAGCAAAGGTTGACA 59.177 40.909 14.94 8.27 45.50 3.58
385 389 3.502191 TGACAACAAGCAAAGGTTGAC 57.498 42.857 14.94 5.89 45.50 3.18
386 390 5.129634 TCTATGACAACAAGCAAAGGTTGA 58.870 37.500 14.94 0.00 45.50 3.18
388 392 6.449698 CATTCTATGACAACAAGCAAAGGTT 58.550 36.000 0.00 0.00 0.00 3.50
389 393 5.047802 CCATTCTATGACAACAAGCAAAGGT 60.048 40.000 0.00 0.00 0.00 3.50
390 394 5.404946 CCATTCTATGACAACAAGCAAAGG 58.595 41.667 0.00 0.00 0.00 3.11
391 395 4.860907 GCCATTCTATGACAACAAGCAAAG 59.139 41.667 0.00 0.00 0.00 2.77
392 396 4.280425 TGCCATTCTATGACAACAAGCAAA 59.720 37.500 0.00 0.00 0.00 3.68
393 397 3.825585 TGCCATTCTATGACAACAAGCAA 59.174 39.130 0.00 0.00 0.00 3.91
394 398 3.419943 TGCCATTCTATGACAACAAGCA 58.580 40.909 0.00 0.00 0.00 3.91
395 399 4.418392 CTTGCCATTCTATGACAACAAGC 58.582 43.478 0.00 0.00 29.50 4.01
396 400 4.701651 TCCTTGCCATTCTATGACAACAAG 59.298 41.667 0.00 0.00 29.50 3.16
397 401 4.661222 TCCTTGCCATTCTATGACAACAA 58.339 39.130 0.00 0.00 29.50 2.83
398 402 4.299586 TCCTTGCCATTCTATGACAACA 57.700 40.909 0.00 0.00 29.50 3.33
399 403 4.498682 GCATCCTTGCCATTCTATGACAAC 60.499 45.833 0.00 0.00 43.38 3.32
400 404 3.633525 GCATCCTTGCCATTCTATGACAA 59.366 43.478 0.00 0.00 43.38 3.18
401 405 3.216800 GCATCCTTGCCATTCTATGACA 58.783 45.455 0.00 0.00 43.38 3.58
402 406 3.911661 GCATCCTTGCCATTCTATGAC 57.088 47.619 0.00 0.00 43.38 3.06
420 424 7.519488 GAAATAATCAGATTTCAGCATCGAGCA 60.519 37.037 0.00 0.00 42.80 4.26
421 425 5.859521 ATAATCAGATTTCAGCATCGAGC 57.140 39.130 0.00 0.00 46.19 5.03
422 426 7.296660 GGAAATAATCAGATTTCAGCATCGAG 58.703 38.462 0.00 0.00 44.34 4.04
423 427 6.073602 CGGAAATAATCAGATTTCAGCATCGA 60.074 38.462 0.00 0.00 44.34 3.59
424 428 6.075918 CGGAAATAATCAGATTTCAGCATCG 58.924 40.000 0.00 2.13 44.34 3.84
425 429 6.854892 CACGGAAATAATCAGATTTCAGCATC 59.145 38.462 0.00 0.00 44.34 3.91
426 430 6.543465 TCACGGAAATAATCAGATTTCAGCAT 59.457 34.615 0.00 0.00 44.34 3.79
427 431 5.879777 TCACGGAAATAATCAGATTTCAGCA 59.120 36.000 0.00 0.00 44.34 4.41
428 432 6.183360 TGTCACGGAAATAATCAGATTTCAGC 60.183 38.462 0.00 0.00 44.34 4.26
429 433 7.307493 TGTCACGGAAATAATCAGATTTCAG 57.693 36.000 0.00 8.70 44.34 3.02
430 434 7.626240 GCTTGTCACGGAAATAATCAGATTTCA 60.626 37.037 0.00 0.00 44.34 2.69
431 435 6.688813 GCTTGTCACGGAAATAATCAGATTTC 59.311 38.462 0.00 1.11 42.63 2.17
432 436 6.404734 GGCTTGTCACGGAAATAATCAGATTT 60.405 38.462 0.00 0.00 0.00 2.17
433 437 5.066505 GGCTTGTCACGGAAATAATCAGATT 59.933 40.000 0.20 0.20 0.00 2.40
434 438 4.576463 GGCTTGTCACGGAAATAATCAGAT 59.424 41.667 0.00 0.00 0.00 2.90
435 439 3.938963 GGCTTGTCACGGAAATAATCAGA 59.061 43.478 0.00 0.00 0.00 3.27
436 440 3.689161 TGGCTTGTCACGGAAATAATCAG 59.311 43.478 0.00 0.00 0.00 2.90
437 441 3.438781 GTGGCTTGTCACGGAAATAATCA 59.561 43.478 0.00 0.00 0.00 2.57
438 442 3.438781 TGTGGCTTGTCACGGAAATAATC 59.561 43.478 0.83 0.00 40.31 1.75
439 443 3.417101 TGTGGCTTGTCACGGAAATAAT 58.583 40.909 0.83 0.00 40.31 1.28
440 444 2.852449 TGTGGCTTGTCACGGAAATAA 58.148 42.857 0.83 0.00 40.31 1.40
441 445 2.552599 TGTGGCTTGTCACGGAAATA 57.447 45.000 0.83 0.00 40.31 1.40
442 446 1.812571 GATGTGGCTTGTCACGGAAAT 59.187 47.619 0.83 0.00 40.31 2.17
443 447 1.234821 GATGTGGCTTGTCACGGAAA 58.765 50.000 0.83 0.00 40.31 3.13
444 448 0.107643 TGATGTGGCTTGTCACGGAA 59.892 50.000 0.83 0.00 40.31 4.30
445 449 0.320683 CTGATGTGGCTTGTCACGGA 60.321 55.000 0.83 0.00 40.31 4.69
446 450 1.300971 CCTGATGTGGCTTGTCACGG 61.301 60.000 0.83 0.00 40.31 4.94
477 481 1.318576 AAACCAAAACAGAGCCCGAG 58.681 50.000 0.00 0.00 0.00 4.63
478 482 1.679153 GAAAACCAAAACAGAGCCCGA 59.321 47.619 0.00 0.00 0.00 5.14
479 483 1.681264 AGAAAACCAAAACAGAGCCCG 59.319 47.619 0.00 0.00 0.00 6.13
494 498 6.652062 GGAAGGTTCAAATACGAGGTAGAAAA 59.348 38.462 0.00 0.00 0.00 2.29
516 522 2.974692 TTCGGGCTGCTTGCTTGGAA 62.975 55.000 0.00 2.17 42.39 3.53
541 547 4.202326 GGAAGAAGTAAGGAGTGGTGTGAA 60.202 45.833 0.00 0.00 0.00 3.18
545 551 4.570930 GAAGGAAGAAGTAAGGAGTGGTG 58.429 47.826 0.00 0.00 0.00 4.17
585 592 0.657840 GTCGTGCACAATATGGCCTC 59.342 55.000 18.64 0.00 0.00 4.70
597 612 1.979155 CAGGGAGGAGAGTCGTGCA 60.979 63.158 0.00 0.00 0.00 4.57
617 632 4.322057 AACCAATAGCAGGAGGACAAAT 57.678 40.909 0.00 0.00 0.00 2.32
620 635 2.375174 ACAAACCAATAGCAGGAGGACA 59.625 45.455 0.00 0.00 0.00 4.02
631 646 5.126222 TCACAGTTGCAGAAACAAACCAATA 59.874 36.000 0.00 0.00 41.61 1.90
653 668 2.647299 AGGTGTTATTGGGTGTCCATCA 59.353 45.455 0.00 0.00 43.63 3.07
659 674 2.373335 TTGCAGGTGTTATTGGGTGT 57.627 45.000 0.00 0.00 0.00 4.16
663 678 1.617850 TGGCTTTGCAGGTGTTATTGG 59.382 47.619 0.00 0.00 0.00 3.16
664 679 2.610232 GGTGGCTTTGCAGGTGTTATTG 60.610 50.000 0.00 0.00 0.00 1.90
665 680 1.618343 GGTGGCTTTGCAGGTGTTATT 59.382 47.619 0.00 0.00 0.00 1.40
666 681 1.203050 AGGTGGCTTTGCAGGTGTTAT 60.203 47.619 0.00 0.00 0.00 1.89
694 715 1.354337 CTGTCCACCATCACGAAGCG 61.354 60.000 0.00 0.00 0.00 4.68
756 778 3.845781 TCAGCATTCCTATTGGTCTCC 57.154 47.619 0.00 0.00 34.23 3.71
795 820 2.948979 GACAAATGACACAGGACCACAA 59.051 45.455 0.00 0.00 0.00 3.33
835 1007 6.299141 ACCTATTCATCGGATTGCTTACATT 58.701 36.000 0.00 0.00 0.00 2.71
842 1014 5.392767 TCTCTACCTATTCATCGGATTGC 57.607 43.478 0.00 0.00 0.00 3.56
852 1024 6.868622 TGCTCAGACTTTTCTCTACCTATTC 58.131 40.000 0.00 0.00 0.00 1.75
907 1151 7.659390 GGAAGAAGGTAGAACATATGAAGATGG 59.341 40.741 10.38 0.00 0.00 3.51
908 1152 8.428063 AGGAAGAAGGTAGAACATATGAAGATG 58.572 37.037 10.38 0.00 0.00 2.90
909 1153 8.560124 AGGAAGAAGGTAGAACATATGAAGAT 57.440 34.615 10.38 0.00 0.00 2.40
910 1154 7.979786 AGGAAGAAGGTAGAACATATGAAGA 57.020 36.000 10.38 0.00 0.00 2.87
911 1155 9.454859 AAAAGGAAGAAGGTAGAACATATGAAG 57.545 33.333 10.38 0.00 0.00 3.02
912 1156 9.231297 CAAAAGGAAGAAGGTAGAACATATGAA 57.769 33.333 10.38 0.00 0.00 2.57
913 1157 7.336931 GCAAAAGGAAGAAGGTAGAACATATGA 59.663 37.037 10.38 0.00 0.00 2.15
914 1158 7.337942 AGCAAAAGGAAGAAGGTAGAACATATG 59.662 37.037 0.00 0.00 0.00 1.78
915 1159 7.406104 AGCAAAAGGAAGAAGGTAGAACATAT 58.594 34.615 0.00 0.00 0.00 1.78
916 1160 6.779860 AGCAAAAGGAAGAAGGTAGAACATA 58.220 36.000 0.00 0.00 0.00 2.29
917 1161 5.635120 AGCAAAAGGAAGAAGGTAGAACAT 58.365 37.500 0.00 0.00 0.00 2.71
918 1162 5.048846 AGCAAAAGGAAGAAGGTAGAACA 57.951 39.130 0.00 0.00 0.00 3.18
919 1163 5.049336 GTGAGCAAAAGGAAGAAGGTAGAAC 60.049 44.000 0.00 0.00 0.00 3.01
920 1164 5.063880 GTGAGCAAAAGGAAGAAGGTAGAA 58.936 41.667 0.00 0.00 0.00 2.10
921 1165 4.505039 GGTGAGCAAAAGGAAGAAGGTAGA 60.505 45.833 0.00 0.00 0.00 2.59
922 1166 3.753797 GGTGAGCAAAAGGAAGAAGGTAG 59.246 47.826 0.00 0.00 0.00 3.18
923 1167 3.497942 GGGTGAGCAAAAGGAAGAAGGTA 60.498 47.826 0.00 0.00 0.00 3.08
924 1168 2.587522 GGTGAGCAAAAGGAAGAAGGT 58.412 47.619 0.00 0.00 0.00 3.50
925 1169 1.889170 GGGTGAGCAAAAGGAAGAAGG 59.111 52.381 0.00 0.00 0.00 3.46
926 1170 2.586425 TGGGTGAGCAAAAGGAAGAAG 58.414 47.619 0.00 0.00 0.00 2.85
927 1171 2.746279 TGGGTGAGCAAAAGGAAGAA 57.254 45.000 0.00 0.00 0.00 2.52
928 1172 2.376518 AGATGGGTGAGCAAAAGGAAGA 59.623 45.455 0.00 0.00 0.00 2.87
929 1173 2.800250 AGATGGGTGAGCAAAAGGAAG 58.200 47.619 0.00 0.00 0.00 3.46
930 1174 2.978156 AGATGGGTGAGCAAAAGGAA 57.022 45.000 0.00 0.00 0.00 3.36
931 1175 2.108075 TGAAGATGGGTGAGCAAAAGGA 59.892 45.455 0.00 0.00 0.00 3.36
932 1176 2.517959 TGAAGATGGGTGAGCAAAAGG 58.482 47.619 0.00 0.00 0.00 3.11
933 1177 6.543465 TGTATATGAAGATGGGTGAGCAAAAG 59.457 38.462 0.00 0.00 0.00 2.27
934 1178 6.318648 GTGTATATGAAGATGGGTGAGCAAAA 59.681 38.462 0.00 0.00 0.00 2.44
935 1179 5.822519 GTGTATATGAAGATGGGTGAGCAAA 59.177 40.000 0.00 0.00 0.00 3.68
936 1180 5.130975 AGTGTATATGAAGATGGGTGAGCAA 59.869 40.000 0.00 0.00 0.00 3.91
937 1181 4.655649 AGTGTATATGAAGATGGGTGAGCA 59.344 41.667 0.00 0.00 0.00 4.26
938 1182 5.220710 AGTGTATATGAAGATGGGTGAGC 57.779 43.478 0.00 0.00 0.00 4.26
939 1183 6.495181 AGGTAGTGTATATGAAGATGGGTGAG 59.505 42.308 0.00 0.00 0.00 3.51
940 1184 6.382087 AGGTAGTGTATATGAAGATGGGTGA 58.618 40.000 0.00 0.00 0.00 4.02
941 1185 6.672266 AGGTAGTGTATATGAAGATGGGTG 57.328 41.667 0.00 0.00 0.00 4.61
942 1186 7.076446 AGAAGGTAGTGTATATGAAGATGGGT 58.924 38.462 0.00 0.00 0.00 4.51
943 1187 7.546250 AGAAGGTAGTGTATATGAAGATGGG 57.454 40.000 0.00 0.00 0.00 4.00
957 1201 2.996621 CGAGCAAAGGAAGAAGGTAGTG 59.003 50.000 0.00 0.00 0.00 2.74
990 1234 3.979501 ATCATGTCCATTAGGCCCTTT 57.020 42.857 0.00 0.00 33.74 3.11
995 1239 4.278419 GGGTGTAAATCATGTCCATTAGGC 59.722 45.833 0.00 0.00 33.74 3.93
1046 1290 2.149578 GATCATCGGATTGGCAGAAGG 58.850 52.381 0.00 0.00 32.67 3.46
1054 1298 2.476619 GTGTTAGGCGATCATCGGATTG 59.523 50.000 9.59 0.00 40.84 2.67
1097 1341 2.196749 CGCTTGAGATAAGCATGTCGT 58.803 47.619 11.62 0.00 43.15 4.34
1103 1347 0.744414 GCCACCGCTTGAGATAAGCA 60.744 55.000 11.62 0.00 43.15 3.91
1107 1351 1.123077 AGATGCCACCGCTTGAGATA 58.877 50.000 0.00 0.00 35.36 1.98
1224 1468 2.253414 GATTTGGGCTGTCGCGGTTC 62.253 60.000 6.13 0.00 36.88 3.62
1241 1485 1.915141 CCAAAGGAACTGCTGGTGAT 58.085 50.000 0.00 0.00 40.86 3.06
1292 1536 3.750922 GCTTCTTTGGGGTCTAACAAGGT 60.751 47.826 0.00 0.00 0.00 3.50
1526 1804 1.125093 TTGTGGACGGGTCATCAGGT 61.125 55.000 0.75 0.00 0.00 4.00
1631 1909 1.891919 GACAAGCGCACCAGTCCAA 60.892 57.895 11.47 0.00 0.00 3.53
1903 6163 1.537202 ACTTGCAAGTTGGAATCGCTC 59.463 47.619 26.36 0.00 35.21 5.03
2202 6511 2.257409 ATACCACCAGCAGGCTTCCG 62.257 60.000 0.00 0.00 39.06 4.30
2325 6674 6.481643 AGTAGCCACCATACAAACTTACATT 58.518 36.000 0.00 0.00 0.00 2.71
2750 7645 7.686438 TTGTAACATCTCATGTACTGCAAAT 57.314 32.000 0.00 0.00 44.07 2.32
2844 7917 6.005583 TCTTTTTCTCATCAACTGCACATC 57.994 37.500 0.00 0.00 0.00 3.06
2847 7920 6.026513 GCTATCTTTTTCTCATCAACTGCAC 58.973 40.000 0.00 0.00 0.00 4.57
3342 9951 5.369699 CCCTTTCCCAGATCCAATACTAAGA 59.630 44.000 0.00 0.00 0.00 2.10
3370 9981 8.658840 AGAACTACTTCATTCCTAAACTCTCT 57.341 34.615 0.00 0.00 0.00 3.10
3545 12002 6.412214 ACCCTCGCTGTAGTTAATGTAAAAT 58.588 36.000 0.00 0.00 0.00 1.82
3560 12017 1.940613 GCCATAGTAAAACCCTCGCTG 59.059 52.381 0.00 0.00 0.00 5.18
3683 12145 7.928307 TGAATCTTTGTGGAGATAAAGAAGG 57.072 36.000 0.00 0.00 43.67 3.46
3792 12254 2.029623 CCTCCAAAGATCCTTGCCATG 58.970 52.381 0.00 0.00 0.00 3.66
3820 12282 3.434637 CACGCTTAGTGTTTGCTTGTTT 58.565 40.909 0.00 0.00 45.51 2.83
3867 12329 1.764723 ACTGAGCATAGCTGGTGCATA 59.235 47.619 22.70 12.71 44.87 3.14
3972 12485 5.365619 TCAGACTTGACAGAAAAGTAACCC 58.634 41.667 0.00 0.00 37.98 4.11
4023 12536 2.864343 CCTTAACCCGCTTACAATCTCG 59.136 50.000 0.00 0.00 0.00 4.04
4053 12566 3.515602 AAGTCCATTATGAGATGGGGC 57.484 47.619 4.23 0.00 45.42 5.80
4133 12652 9.653287 CAATTTCTGGTCAAGTTACTATGAGTA 57.347 33.333 0.00 0.00 0.00 2.59
4141 12663 9.696917 AATGAAATCAATTTCTGGTCAAGTTAC 57.303 29.630 14.67 0.00 44.85 2.50
4219 12747 2.419324 ACATCTCTCTACAACCGACGAC 59.581 50.000 0.00 0.00 0.00 4.34
4237 12765 5.995282 TCGTAAAACTTCATCAAGTGGACAT 59.005 36.000 0.00 0.00 42.45 3.06
4410 12943 5.455326 CGGATCTTCCCATGTATTTTCTCCT 60.455 44.000 0.00 0.00 31.13 3.69
4433 12966 4.498241 TGGTCATTTCATTCTGAGTCTCG 58.502 43.478 0.00 0.00 0.00 4.04
4467 13000 7.712204 AACCAATAAACATTTATCGTCCCTT 57.288 32.000 0.00 0.00 32.46 3.95
4488 13021 4.823790 ACGAACAAGGAACAATGTAACC 57.176 40.909 0.00 2.15 30.66 2.85
4493 13026 4.675114 GCAGTTTACGAACAAGGAACAATG 59.325 41.667 0.00 0.00 38.26 2.82
4494 13027 4.578928 AGCAGTTTACGAACAAGGAACAAT 59.421 37.500 0.00 0.00 38.26 2.71
4525 13060 2.614481 GGTAGGAATCGCTCAACCACAA 60.614 50.000 0.00 0.00 33.67 3.33
4528 13063 1.271856 TGGTAGGAATCGCTCAACCA 58.728 50.000 6.67 6.67 38.60 3.67
4529 13064 2.396590 TTGGTAGGAATCGCTCAACC 57.603 50.000 0.00 0.00 33.94 3.77
4566 13101 5.107645 CGTGTTGACAACAATCTATTCGACA 60.108 40.000 22.16 0.00 44.16 4.35
4567 13102 5.305812 CGTGTTGACAACAATCTATTCGAC 58.694 41.667 22.16 5.51 44.16 4.20
4568 13103 4.143200 GCGTGTTGACAACAATCTATTCGA 60.143 41.667 22.16 0.00 44.16 3.71
4575 13122 1.780860 GCTTGCGTGTTGACAACAATC 59.219 47.619 22.16 16.20 44.16 2.67
4578 13125 0.098552 CAGCTTGCGTGTTGACAACA 59.901 50.000 17.02 17.02 39.52 3.33
4582 13129 1.009675 CCACAGCTTGCGTGTTGAC 60.010 57.895 13.25 0.00 32.26 3.18
4588 13135 0.324943 ATTACTCCCACAGCTTGCGT 59.675 50.000 0.00 0.00 0.00 5.24
4591 13138 1.755179 CCCATTACTCCCACAGCTTG 58.245 55.000 0.00 0.00 0.00 4.01
4592 13139 0.034089 GCCCATTACTCCCACAGCTT 60.034 55.000 0.00 0.00 0.00 3.74
4593 13140 1.609783 GCCCATTACTCCCACAGCT 59.390 57.895 0.00 0.00 0.00 4.24
5102 15549 3.446570 CGTCTTCGGGGCGTACCT 61.447 66.667 0.00 0.00 40.03 3.08
5195 15646 0.179000 GATCACTGTCGCCATTCCCT 59.821 55.000 0.00 0.00 0.00 4.20
5259 16557 1.290203 CCGTGCTTCTAATGACGCAT 58.710 50.000 0.88 0.00 46.54 4.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.