Multiple sequence alignment - TraesCS2B01G510800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G510800 chr2B 100.000 4481 0 0 1 4481 706723500 706727980 0.000000e+00 8275.0
1 TraesCS2B01G510800 chr2B 79.391 1708 187 95 663 2311 759450865 759449264 0.000000e+00 1051.0
2 TraesCS2B01G510800 chr2B 80.000 495 50 26 3033 3488 759448606 759448122 2.010000e-83 320.0
3 TraesCS2B01G510800 chr2B 100.000 128 0 0 455 582 500713734 500713861 2.080000e-58 237.0
4 TraesCS2B01G510800 chr2B 75.487 616 78 46 3629 4220 759447951 759447385 2.700000e-57 233.0
5 TraesCS2B01G510800 chr2B 84.940 166 17 5 2492 2652 759449093 759448931 1.290000e-35 161.0
6 TraesCS2B01G510800 chr2B 92.308 104 7 1 2907 3010 759448768 759448666 3.610000e-31 147.0
7 TraesCS2B01G510800 chr2D 92.614 2031 75 32 2437 4438 585681292 585683276 0.000000e+00 2850.0
8 TraesCS2B01G510800 chr2D 93.286 1564 57 16 581 2101 585679307 585680865 0.000000e+00 2263.0
9 TraesCS2B01G510800 chr2D 81.717 1444 140 74 663 2068 619711928 619710571 0.000000e+00 1090.0
10 TraesCS2B01G510800 chr2D 90.560 339 13 12 2098 2426 585680977 585681306 8.900000e-117 431.0
11 TraesCS2B01G510800 chr2D 95.312 256 11 1 1 256 585678843 585679097 5.400000e-109 405.0
12 TraesCS2B01G510800 chr2D 73.956 1317 167 105 3033 4241 619709674 619708426 1.970000e-98 370.0
13 TraesCS2B01G510800 chr2D 99.219 128 1 0 455 582 637321514 637321387 9.690000e-57 231.0
14 TraesCS2B01G510800 chr2D 98.958 96 1 0 359 454 306134335 306134430 5.960000e-39 172.0
15 TraesCS2B01G510800 chr2D 85.542 166 16 6 2492 2652 619710170 619710008 2.770000e-37 167.0
16 TraesCS2B01G510800 chr2D 92.308 104 7 1 2907 3010 619709842 619709740 3.610000e-31 147.0
17 TraesCS2B01G510800 chr2D 93.671 79 5 0 272 350 585679161 585679239 7.870000e-23 119.0
18 TraesCS2B01G510800 chr2A 90.689 1858 65 47 2120 3945 719722176 719723957 0.000000e+00 2374.0
19 TraesCS2B01G510800 chr2A 92.037 1532 57 14 581 2092 719720691 719722177 0.000000e+00 2093.0
20 TraesCS2B01G510800 chr2A 79.347 1714 193 100 663 2311 751384014 751382397 0.000000e+00 1055.0
21 TraesCS2B01G510800 chr2A 95.985 274 11 0 4009 4282 719724297 719724570 3.180000e-121 446.0
22 TraesCS2B01G510800 chr2A 74.695 1312 156 111 3037 4241 751381764 751380522 5.360000e-114 422.0
23 TraesCS2B01G510800 chr2A 93.609 266 15 1 1 266 719720294 719720557 3.250000e-106 396.0
24 TraesCS2B01G510800 chr2A 94.656 131 5 1 4308 4438 719724568 719724696 7.600000e-48 202.0
25 TraesCS2B01G510800 chr2A 84.940 166 13 9 2492 2652 751382252 751382094 1.670000e-34 158.0
26 TraesCS2B01G510800 chr2A 91.346 104 8 1 2907 3010 751381928 751381826 1.680000e-29 141.0
27 TraesCS2B01G510800 chr2A 93.671 79 5 0 272 350 719720591 719720669 7.870000e-23 119.0
28 TraesCS2B01G510800 chr2A 98.000 50 1 0 3958 4007 719724225 719724274 2.220000e-13 87.9
29 TraesCS2B01G510800 chr2A 97.368 38 1 0 230 267 57534748 57534711 1.040000e-06 65.8
30 TraesCS2B01G510800 chr7D 100.000 128 0 0 455 582 579025990 579026117 2.080000e-58 237.0
31 TraesCS2B01G510800 chr7D 97.917 96 2 0 359 454 382044300 382044395 2.770000e-37 167.0
32 TraesCS2B01G510800 chrUn 99.219 128 1 0 455 582 273320685 273320558 9.690000e-57 231.0
33 TraesCS2B01G510800 chrUn 97.917 96 2 0 359 454 45085454 45085359 2.770000e-37 167.0
34 TraesCS2B01G510800 chrUn 97.917 96 2 0 359 454 231546101 231546006 2.770000e-37 167.0
35 TraesCS2B01G510800 chrUn 100.000 38 0 0 232 269 232947707 232947670 2.240000e-08 71.3
36 TraesCS2B01G510800 chrUn 100.000 38 0 0 232 269 232958624 232958587 2.240000e-08 71.3
37 TraesCS2B01G510800 chr7A 99.219 128 1 0 455 582 60107381 60107254 9.690000e-57 231.0
38 TraesCS2B01G510800 chr7A 97.368 38 1 0 232 269 698141594 698141631 1.040000e-06 65.8
39 TraesCS2B01G510800 chr6D 99.219 128 1 0 455 582 108463965 108464092 9.690000e-57 231.0
40 TraesCS2B01G510800 chr5A 99.219 128 1 0 455 582 73031207 73031334 9.690000e-57 231.0
41 TraesCS2B01G510800 chr3D 99.219 128 1 0 455 582 308602975 308602848 9.690000e-57 231.0
42 TraesCS2B01G510800 chr1B 99.219 128 1 0 455 582 638750394 638750267 9.690000e-57 231.0
43 TraesCS2B01G510800 chr1B 97.917 96 2 0 359 454 619175262 619175167 2.770000e-37 167.0
44 TraesCS2B01G510800 chr4D 98.958 96 1 0 359 454 285036717 285036812 5.960000e-39 172.0
45 TraesCS2B01G510800 chr4D 97.938 97 1 1 359 454 241393633 241393537 2.770000e-37 167.0
46 TraesCS2B01G510800 chr4A 97.917 96 2 0 359 454 67529262 67529167 2.770000e-37 167.0
47 TraesCS2B01G510800 chr4A 97.917 96 2 0 359 454 552083277 552083182 2.770000e-37 167.0
48 TraesCS2B01G510800 chr5B 100.000 38 0 0 232 269 563727711 563727674 2.240000e-08 71.3
49 TraesCS2B01G510800 chr5B 100.000 38 0 0 232 269 563756217 563756180 2.240000e-08 71.3
50 TraesCS2B01G510800 chr5D 100.000 35 0 0 233 267 381564314 381564280 1.040000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G510800 chr2B 706723500 706727980 4480 False 8275.000000 8275 100.000000 1 4481 1 chr2B.!!$F2 4480
1 TraesCS2B01G510800 chr2B 759447385 759450865 3480 True 382.400000 1051 82.425200 663 4220 5 chr2B.!!$R1 3557
2 TraesCS2B01G510800 chr2D 585678843 585683276 4433 False 1213.600000 2850 93.088600 1 4438 5 chr2D.!!$F2 4437
3 TraesCS2B01G510800 chr2D 619708426 619711928 3502 True 443.500000 1090 83.380750 663 4241 4 chr2D.!!$R2 3578
4 TraesCS2B01G510800 chr2A 719720294 719724696 4402 False 816.842857 2374 94.092429 1 4438 7 chr2A.!!$F1 4437
5 TraesCS2B01G510800 chr2A 751380522 751384014 3492 True 444.000000 1055 82.582000 663 4241 4 chr2A.!!$R2 3578

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
392 488 0.105964 AACTGCTTAGTGGCGTGTGA 59.894 50.0 0.0 0.0 34.52 3.58 F
393 489 0.321671 ACTGCTTAGTGGCGTGTGAT 59.678 50.0 0.0 0.0 34.52 3.06 F
463 559 0.396435 TGTTCCTCAGACGCCAATGT 59.604 50.0 0.0 0.0 0.00 2.71 F
2330 2653 1.067295 GGCATCATCCCATAGTCCCA 58.933 55.0 0.0 0.0 0.00 4.37 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1993 2179 2.164026 GCACGCTAGTCTGCTCAGC 61.164 63.158 0.00 0.00 0.0 4.26 R
2144 2454 7.186268 TGGCCACCTATTTATTTTAGTTTCCT 58.814 34.615 0.00 0.00 0.0 3.36 R
2462 2841 2.052782 AATACGGGCTTTCATCCACC 57.947 50.000 0.00 0.00 0.0 4.61 R
3534 4162 1.409064 TCAAGGTCGATCGATCAAGGG 59.591 52.381 28.86 15.07 0.0 3.95 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
119 120 4.364415 AAGTTGCTCGATCACTAGAGAC 57.636 45.455 0.00 0.00 36.65 3.36
170 171 1.619332 GAACAAAGGGACGAGGTCTCT 59.381 52.381 0.00 0.00 46.42 3.10
197 199 3.661944 TCGGTAGTCGAGATAGGATCAC 58.338 50.000 0.00 0.00 43.74 3.06
242 244 4.280789 AGACCATAATGTACTCCCTCCA 57.719 45.455 0.00 0.00 0.00 3.86
256 258 7.964867 TGTACTCCCTCCATCCCATAATATAAA 59.035 37.037 0.00 0.00 0.00 1.40
316 366 9.250986 CAAGACAATCGAGTTAAAGAAATTACG 57.749 33.333 0.00 0.00 0.00 3.18
317 367 8.752766 AGACAATCGAGTTAAAGAAATTACGA 57.247 30.769 0.00 0.00 0.00 3.43
345 441 1.268899 AGTGCAGTTGCTCTTCATTGC 59.731 47.619 5.62 0.00 41.50 3.56
353 449 4.587584 TTGCTCTTCATTGCAATTGTGA 57.412 36.364 9.83 2.75 43.17 3.58
358 454 2.565210 TCATTGCAATTGTGATCGGC 57.435 45.000 9.83 0.00 0.00 5.54
359 455 1.134753 TCATTGCAATTGTGATCGGCC 59.865 47.619 9.83 0.00 0.00 6.13
361 457 0.243365 TTGCAATTGTGATCGGCCAC 59.757 50.000 2.24 0.00 37.55 5.01
363 459 0.527565 GCAATTGTGATCGGCCACTT 59.472 50.000 2.24 0.00 37.89 3.16
365 461 1.135315 CAATTGTGATCGGCCACTTGG 60.135 52.381 2.24 0.00 37.89 3.61
370 466 2.156098 GTGATCGGCCACTTGGTTTAA 58.844 47.619 2.24 0.00 37.57 1.52
371 467 2.554893 GTGATCGGCCACTTGGTTTAAA 59.445 45.455 2.24 0.00 37.57 1.52
372 468 3.004944 GTGATCGGCCACTTGGTTTAAAA 59.995 43.478 2.24 0.00 37.57 1.52
373 469 3.637229 TGATCGGCCACTTGGTTTAAAAA 59.363 39.130 2.24 0.00 37.57 1.94
389 485 2.774439 AAAAACTGCTTAGTGGCGTG 57.226 45.000 0.00 0.00 34.52 5.34
390 486 1.675552 AAAACTGCTTAGTGGCGTGT 58.324 45.000 0.00 0.00 34.52 4.49
391 487 0.944386 AAACTGCTTAGTGGCGTGTG 59.056 50.000 0.00 0.00 34.52 3.82
392 488 0.105964 AACTGCTTAGTGGCGTGTGA 59.894 50.000 0.00 0.00 34.52 3.58
393 489 0.321671 ACTGCTTAGTGGCGTGTGAT 59.678 50.000 0.00 0.00 34.52 3.06
394 490 1.270839 ACTGCTTAGTGGCGTGTGATT 60.271 47.619 0.00 0.00 34.52 2.57
395 491 1.806542 CTGCTTAGTGGCGTGTGATTT 59.193 47.619 0.00 0.00 34.52 2.17
396 492 1.804151 TGCTTAGTGGCGTGTGATTTC 59.196 47.619 0.00 0.00 34.52 2.17
397 493 1.804151 GCTTAGTGGCGTGTGATTTCA 59.196 47.619 0.00 0.00 0.00 2.69
398 494 2.225491 GCTTAGTGGCGTGTGATTTCAA 59.775 45.455 0.00 0.00 0.00 2.69
399 495 3.810373 CTTAGTGGCGTGTGATTTCAAC 58.190 45.455 0.00 0.00 0.00 3.18
400 496 1.674359 AGTGGCGTGTGATTTCAACA 58.326 45.000 0.00 0.00 0.00 3.33
401 497 1.333619 AGTGGCGTGTGATTTCAACAC 59.666 47.619 0.00 0.00 38.55 3.32
402 498 1.333619 GTGGCGTGTGATTTCAACACT 59.666 47.619 5.29 0.00 38.81 3.55
403 499 2.546368 GTGGCGTGTGATTTCAACACTA 59.454 45.455 5.29 0.00 38.81 2.74
404 500 3.188460 GTGGCGTGTGATTTCAACACTAT 59.812 43.478 5.29 0.00 38.81 2.12
405 501 3.818210 TGGCGTGTGATTTCAACACTATT 59.182 39.130 5.29 0.00 38.81 1.73
406 502 4.083537 TGGCGTGTGATTTCAACACTATTC 60.084 41.667 5.29 0.00 38.81 1.75
407 503 4.403453 GCGTGTGATTTCAACACTATTCC 58.597 43.478 5.29 0.00 38.81 3.01
408 504 4.083537 GCGTGTGATTTCAACACTATTCCA 60.084 41.667 5.29 0.00 38.81 3.53
409 505 5.621422 CGTGTGATTTCAACACTATTCCAG 58.379 41.667 5.29 0.00 38.81 3.86
410 506 5.408299 CGTGTGATTTCAACACTATTCCAGA 59.592 40.000 5.29 0.00 38.81 3.86
411 507 6.401474 CGTGTGATTTCAACACTATTCCAGAG 60.401 42.308 5.29 0.00 38.81 3.35
412 508 5.939883 TGTGATTTCAACACTATTCCAGAGG 59.060 40.000 0.00 0.00 38.81 3.69
413 509 5.940470 GTGATTTCAACACTATTCCAGAGGT 59.060 40.000 0.00 0.00 35.66 3.85
414 510 7.103641 GTGATTTCAACACTATTCCAGAGGTA 58.896 38.462 0.00 0.00 35.66 3.08
415 511 7.770897 GTGATTTCAACACTATTCCAGAGGTAT 59.229 37.037 0.00 0.00 35.66 2.73
416 512 8.988060 TGATTTCAACACTATTCCAGAGGTATA 58.012 33.333 0.00 0.00 0.00 1.47
417 513 9.262358 GATTTCAACACTATTCCAGAGGTATAC 57.738 37.037 0.00 0.00 0.00 1.47
418 514 6.387041 TCAACACTATTCCAGAGGTATACG 57.613 41.667 0.00 0.00 0.00 3.06
419 515 6.124340 TCAACACTATTCCAGAGGTATACGA 58.876 40.000 0.00 0.00 0.00 3.43
420 516 6.039047 TCAACACTATTCCAGAGGTATACGAC 59.961 42.308 0.00 0.00 0.00 4.34
421 517 5.443283 ACACTATTCCAGAGGTATACGACA 58.557 41.667 0.00 0.00 0.00 4.35
422 518 5.889853 ACACTATTCCAGAGGTATACGACAA 59.110 40.000 0.00 0.00 0.00 3.18
423 519 6.379133 ACACTATTCCAGAGGTATACGACAAA 59.621 38.462 0.00 0.00 0.00 2.83
424 520 7.093640 ACACTATTCCAGAGGTATACGACAAAA 60.094 37.037 0.00 0.00 0.00 2.44
425 521 7.762615 CACTATTCCAGAGGTATACGACAAAAA 59.237 37.037 0.00 0.00 0.00 1.94
426 522 8.483758 ACTATTCCAGAGGTATACGACAAAAAT 58.516 33.333 0.00 0.00 0.00 1.82
427 523 9.326413 CTATTCCAGAGGTATACGACAAAAATT 57.674 33.333 0.00 0.00 0.00 1.82
428 524 6.978343 TCCAGAGGTATACGACAAAAATTG 57.022 37.500 0.00 0.00 0.00 2.32
430 526 6.370442 TCCAGAGGTATACGACAAAAATTGTG 59.630 38.462 0.00 0.00 45.52 3.33
431 527 6.403200 CCAGAGGTATACGACAAAAATTGTGG 60.403 42.308 0.00 2.13 45.52 4.17
432 528 5.646360 AGAGGTATACGACAAAAATTGTGGG 59.354 40.000 9.50 1.09 45.52 4.61
433 529 5.562635 AGGTATACGACAAAAATTGTGGGA 58.437 37.500 9.50 1.91 45.52 4.37
434 530 5.646360 AGGTATACGACAAAAATTGTGGGAG 59.354 40.000 9.50 0.00 45.52 4.30
435 531 5.644636 GGTATACGACAAAAATTGTGGGAGA 59.355 40.000 9.50 0.00 45.52 3.71
436 532 5.880054 ATACGACAAAAATTGTGGGAGAG 57.120 39.130 9.50 0.00 45.52 3.20
437 533 3.815809 ACGACAAAAATTGTGGGAGAGA 58.184 40.909 9.50 0.00 45.52 3.10
438 534 3.564225 ACGACAAAAATTGTGGGAGAGAC 59.436 43.478 9.50 0.00 45.52 3.36
439 535 3.058224 CGACAAAAATTGTGGGAGAGACC 60.058 47.826 0.00 0.00 45.52 3.85
440 536 4.145052 GACAAAAATTGTGGGAGAGACCT 58.855 43.478 0.00 0.00 45.52 3.85
441 537 4.145052 ACAAAAATTGTGGGAGAGACCTC 58.855 43.478 0.00 0.00 43.48 3.85
442 538 4.141158 ACAAAAATTGTGGGAGAGACCTCT 60.141 41.667 0.00 0.00 43.48 3.69
443 539 5.073144 ACAAAAATTGTGGGAGAGACCTCTA 59.927 40.000 0.00 0.00 43.48 2.43
444 540 6.183347 CAAAAATTGTGGGAGAGACCTCTAT 58.817 40.000 0.00 0.00 40.61 1.98
445 541 5.365021 AAATTGTGGGAGAGACCTCTATG 57.635 43.478 0.00 0.00 40.61 2.23
446 542 3.474798 TTGTGGGAGAGACCTCTATGT 57.525 47.619 0.00 0.00 40.61 2.29
447 543 3.474798 TGTGGGAGAGACCTCTATGTT 57.525 47.619 0.00 0.00 40.61 2.71
448 544 3.366396 TGTGGGAGAGACCTCTATGTTC 58.634 50.000 0.00 0.00 40.61 3.18
449 545 2.696187 GTGGGAGAGACCTCTATGTTCC 59.304 54.545 0.00 0.00 40.61 3.62
450 546 2.587777 TGGGAGAGACCTCTATGTTCCT 59.412 50.000 0.00 0.00 40.61 3.36
451 547 3.227614 GGGAGAGACCTCTATGTTCCTC 58.772 54.545 0.00 0.00 40.61 3.71
452 548 3.373220 GGGAGAGACCTCTATGTTCCTCA 60.373 52.174 0.00 0.00 40.61 3.86
453 549 3.888930 GGAGAGACCTCTATGTTCCTCAG 59.111 52.174 0.00 0.00 40.61 3.35
454 550 4.385865 GGAGAGACCTCTATGTTCCTCAGA 60.386 50.000 0.00 0.00 40.61 3.27
455 551 4.532834 AGAGACCTCTATGTTCCTCAGAC 58.467 47.826 0.00 0.00 38.35 3.51
456 552 3.283751 AGACCTCTATGTTCCTCAGACG 58.716 50.000 0.00 0.00 0.00 4.18
457 553 1.751924 ACCTCTATGTTCCTCAGACGC 59.248 52.381 0.00 0.00 0.00 5.19
458 554 1.067821 CCTCTATGTTCCTCAGACGCC 59.932 57.143 0.00 0.00 0.00 5.68
459 555 1.751351 CTCTATGTTCCTCAGACGCCA 59.249 52.381 0.00 0.00 0.00 5.69
460 556 2.166459 CTCTATGTTCCTCAGACGCCAA 59.834 50.000 0.00 0.00 0.00 4.52
461 557 2.766263 TCTATGTTCCTCAGACGCCAAT 59.234 45.455 0.00 0.00 0.00 3.16
462 558 1.742761 ATGTTCCTCAGACGCCAATG 58.257 50.000 0.00 0.00 0.00 2.82
463 559 0.396435 TGTTCCTCAGACGCCAATGT 59.604 50.000 0.00 0.00 0.00 2.71
464 560 1.202758 TGTTCCTCAGACGCCAATGTT 60.203 47.619 0.00 0.00 0.00 2.71
465 561 2.037902 TGTTCCTCAGACGCCAATGTTA 59.962 45.455 0.00 0.00 0.00 2.41
466 562 3.270877 GTTCCTCAGACGCCAATGTTAT 58.729 45.455 0.00 0.00 0.00 1.89
467 563 2.905075 TCCTCAGACGCCAATGTTATG 58.095 47.619 0.00 0.00 0.00 1.90
468 564 1.942657 CCTCAGACGCCAATGTTATGG 59.057 52.381 0.00 0.00 43.70 2.74
469 565 2.419990 CCTCAGACGCCAATGTTATGGA 60.420 50.000 0.00 0.00 43.54 3.41
470 566 3.270027 CTCAGACGCCAATGTTATGGAA 58.730 45.455 0.00 0.00 43.54 3.53
471 567 3.270027 TCAGACGCCAATGTTATGGAAG 58.730 45.455 0.00 0.00 43.54 3.46
472 568 3.009723 CAGACGCCAATGTTATGGAAGT 58.990 45.455 0.00 0.00 43.54 3.01
473 569 3.440173 CAGACGCCAATGTTATGGAAGTT 59.560 43.478 0.00 0.00 43.54 2.66
474 570 3.689649 AGACGCCAATGTTATGGAAGTTC 59.310 43.478 0.00 0.00 43.54 3.01
475 571 2.752903 ACGCCAATGTTATGGAAGTTCC 59.247 45.455 15.50 15.50 43.54 3.62
476 572 3.016736 CGCCAATGTTATGGAAGTTCCT 58.983 45.455 22.41 10.69 43.54 3.36
477 573 3.181497 CGCCAATGTTATGGAAGTTCCTG 60.181 47.826 22.41 10.33 43.54 3.86
478 574 3.131046 GCCAATGTTATGGAAGTTCCTGG 59.869 47.826 22.41 18.96 43.54 4.45
479 575 4.599041 CCAATGTTATGGAAGTTCCTGGA 58.401 43.478 22.41 3.04 43.54 3.86
480 576 5.203528 CCAATGTTATGGAAGTTCCTGGAT 58.796 41.667 22.41 10.55 43.54 3.41
481 577 5.658190 CCAATGTTATGGAAGTTCCTGGATT 59.342 40.000 22.41 10.43 43.54 3.01
482 578 6.406177 CCAATGTTATGGAAGTTCCTGGATTG 60.406 42.308 22.41 19.08 43.54 2.67
483 579 5.255397 TGTTATGGAAGTTCCTGGATTGT 57.745 39.130 22.41 3.36 37.46 2.71
484 580 5.640147 TGTTATGGAAGTTCCTGGATTGTT 58.360 37.500 22.41 0.00 37.46 2.83
485 581 6.074648 TGTTATGGAAGTTCCTGGATTGTTT 58.925 36.000 22.41 0.11 37.46 2.83
486 582 6.015519 TGTTATGGAAGTTCCTGGATTGTTTG 60.016 38.462 22.41 0.00 37.46 2.93
487 583 4.177537 TGGAAGTTCCTGGATTGTTTGA 57.822 40.909 22.41 0.00 37.46 2.69
488 584 4.541705 TGGAAGTTCCTGGATTGTTTGAA 58.458 39.130 22.41 0.00 37.46 2.69
489 585 4.959210 TGGAAGTTCCTGGATTGTTTGAAA 59.041 37.500 22.41 0.00 37.46 2.69
490 586 5.602145 TGGAAGTTCCTGGATTGTTTGAAAT 59.398 36.000 22.41 0.00 37.46 2.17
491 587 6.780031 TGGAAGTTCCTGGATTGTTTGAAATA 59.220 34.615 22.41 0.00 37.46 1.40
492 588 7.288852 TGGAAGTTCCTGGATTGTTTGAAATAA 59.711 33.333 22.41 0.00 37.46 1.40
493 589 7.814587 GGAAGTTCCTGGATTGTTTGAAATAAG 59.185 37.037 15.09 0.00 32.53 1.73
494 590 8.477419 AAGTTCCTGGATTGTTTGAAATAAGA 57.523 30.769 0.00 0.00 0.00 2.10
495 591 8.655935 AGTTCCTGGATTGTTTGAAATAAGAT 57.344 30.769 0.00 0.00 0.00 2.40
496 592 9.093458 AGTTCCTGGATTGTTTGAAATAAGATT 57.907 29.630 0.00 0.00 0.00 2.40
499 595 9.753674 TCCTGGATTGTTTGAAATAAGATTAGT 57.246 29.630 0.00 0.00 0.00 2.24
511 607 8.458843 TGAAATAAGATTAGTACCAAAAGCTGC 58.541 33.333 0.00 0.00 0.00 5.25
512 608 6.944234 ATAAGATTAGTACCAAAAGCTGCC 57.056 37.500 0.00 0.00 0.00 4.85
513 609 4.576330 AGATTAGTACCAAAAGCTGCCT 57.424 40.909 0.00 0.00 0.00 4.75
514 610 4.518249 AGATTAGTACCAAAAGCTGCCTC 58.482 43.478 0.00 0.00 0.00 4.70
515 611 4.226168 AGATTAGTACCAAAAGCTGCCTCT 59.774 41.667 0.00 0.00 0.00 3.69
516 612 2.191128 AGTACCAAAAGCTGCCTCTG 57.809 50.000 0.00 0.00 0.00 3.35
517 613 1.699634 AGTACCAAAAGCTGCCTCTGA 59.300 47.619 0.00 0.00 0.00 3.27
518 614 2.307098 AGTACCAAAAGCTGCCTCTGAT 59.693 45.455 0.00 0.00 0.00 2.90
519 615 2.299326 ACCAAAAGCTGCCTCTGATT 57.701 45.000 0.00 0.00 0.00 2.57
520 616 2.601905 ACCAAAAGCTGCCTCTGATTT 58.398 42.857 0.00 0.00 0.00 2.17
521 617 2.560105 ACCAAAAGCTGCCTCTGATTTC 59.440 45.455 0.00 0.00 0.00 2.17
522 618 2.559668 CCAAAAGCTGCCTCTGATTTCA 59.440 45.455 0.00 0.00 0.00 2.69
523 619 3.367087 CCAAAAGCTGCCTCTGATTTCAG 60.367 47.826 0.97 0.97 45.08 3.02
550 646 5.743117 CCAATTTGGAAAATTGGCTATGGA 58.257 37.500 24.14 0.00 46.84 3.41
551 647 5.818857 CCAATTTGGAAAATTGGCTATGGAG 59.181 40.000 24.14 5.89 46.84 3.86
552 648 6.352051 CCAATTTGGAAAATTGGCTATGGAGA 60.352 38.462 24.14 0.00 46.84 3.71
553 649 7.277396 CAATTTGGAAAATTGGCTATGGAGAT 58.723 34.615 14.76 0.00 34.80 2.75
554 650 6.872585 TTTGGAAAATTGGCTATGGAGATT 57.127 33.333 0.00 0.00 0.00 2.40
555 651 6.872585 TTGGAAAATTGGCTATGGAGATTT 57.127 33.333 0.00 0.00 0.00 2.17
556 652 6.872585 TGGAAAATTGGCTATGGAGATTTT 57.127 33.333 0.00 0.00 33.87 1.82
557 653 6.642430 TGGAAAATTGGCTATGGAGATTTTG 58.358 36.000 0.00 0.00 32.00 2.44
558 654 6.213195 TGGAAAATTGGCTATGGAGATTTTGT 59.787 34.615 0.00 0.00 32.00 2.83
559 655 6.536224 GGAAAATTGGCTATGGAGATTTTGTG 59.464 38.462 0.00 0.00 32.00 3.33
560 656 4.660789 ATTGGCTATGGAGATTTTGTGC 57.339 40.909 0.00 0.00 0.00 4.57
561 657 2.016318 TGGCTATGGAGATTTTGTGCG 58.984 47.619 0.00 0.00 0.00 5.34
562 658 1.334869 GGCTATGGAGATTTTGTGCGG 59.665 52.381 0.00 0.00 0.00 5.69
563 659 2.017049 GCTATGGAGATTTTGTGCGGT 58.983 47.619 0.00 0.00 0.00 5.68
564 660 2.032178 GCTATGGAGATTTTGTGCGGTC 59.968 50.000 0.00 0.00 0.00 4.79
565 661 2.198827 ATGGAGATTTTGTGCGGTCA 57.801 45.000 0.00 0.00 0.00 4.02
566 662 1.522668 TGGAGATTTTGTGCGGTCAG 58.477 50.000 0.00 0.00 0.00 3.51
567 663 1.071542 TGGAGATTTTGTGCGGTCAGA 59.928 47.619 0.00 0.00 0.00 3.27
568 664 1.734465 GGAGATTTTGTGCGGTCAGAG 59.266 52.381 0.00 0.00 0.00 3.35
569 665 2.612972 GGAGATTTTGTGCGGTCAGAGA 60.613 50.000 0.00 0.00 0.00 3.10
570 666 3.265791 GAGATTTTGTGCGGTCAGAGAT 58.734 45.455 0.00 0.00 0.00 2.75
571 667 3.679389 AGATTTTGTGCGGTCAGAGATT 58.321 40.909 0.00 0.00 0.00 2.40
572 668 3.686726 AGATTTTGTGCGGTCAGAGATTC 59.313 43.478 0.00 0.00 0.00 2.52
573 669 2.542020 TTTGTGCGGTCAGAGATTCA 57.458 45.000 0.00 0.00 0.00 2.57
574 670 2.768253 TTGTGCGGTCAGAGATTCAT 57.232 45.000 0.00 0.00 0.00 2.57
575 671 3.885724 TTGTGCGGTCAGAGATTCATA 57.114 42.857 0.00 0.00 0.00 2.15
576 672 3.165058 TGTGCGGTCAGAGATTCATAC 57.835 47.619 0.00 0.00 0.00 2.39
577 673 2.495669 TGTGCGGTCAGAGATTCATACA 59.504 45.455 0.00 0.00 0.00 2.29
578 674 3.119291 GTGCGGTCAGAGATTCATACAG 58.881 50.000 0.00 0.00 0.00 2.74
579 675 3.023832 TGCGGTCAGAGATTCATACAGA 58.976 45.455 0.00 0.00 0.00 3.41
650 746 2.149578 GCATGACAGTGCTGTTCTCTT 58.850 47.619 6.28 0.00 45.05 2.85
712 810 4.397103 TGATCAGTTGCACCAGATCAATTC 59.603 41.667 15.43 0.00 42.61 2.17
713 811 3.753815 TCAGTTGCACCAGATCAATTCA 58.246 40.909 0.00 0.00 0.00 2.57
851 954 1.620822 ACCACATCTTTTCCACTGCC 58.379 50.000 0.00 0.00 0.00 4.85
852 955 1.133513 ACCACATCTTTTCCACTGCCA 60.134 47.619 0.00 0.00 0.00 4.92
946 1053 2.753043 ATCCCAGCTTGCTTGCCG 60.753 61.111 0.00 0.00 0.00 5.69
1198 1334 4.830765 GCTACGACATGGCGGCCA 62.831 66.667 27.41 26.11 38.19 5.36
1287 1426 3.139077 CGTAACCTTCCAAGAAACAGCT 58.861 45.455 0.00 0.00 0.00 4.24
1412 1566 5.048643 CCCTTCGTGATCTCGTACTATCAAT 60.049 44.000 16.03 0.00 34.06 2.57
1522 1695 3.489416 TGAAATCTATGCGTATGTGCGTC 59.511 43.478 0.00 0.00 37.81 5.19
1707 1881 2.906897 CACCACCACCACCAGCAC 60.907 66.667 0.00 0.00 0.00 4.40
1828 2008 2.125350 CGCTGTTGAGGAGCCTCC 60.125 66.667 13.69 1.26 42.09 4.30
2078 2268 3.412386 CACTAAAGGTAAGCTTGTGCCT 58.588 45.455 9.86 10.99 40.80 4.75
2090 2280 3.772025 AGCTTGTGCCTAGTGATTACTCT 59.228 43.478 0.00 0.00 40.80 3.24
2091 2281 4.956700 AGCTTGTGCCTAGTGATTACTCTA 59.043 41.667 0.00 0.00 40.80 2.43
2144 2454 5.767665 AGCATGGAGTACACAATAACACAAA 59.232 36.000 0.00 0.00 0.00 2.83
2146 2456 6.611381 CATGGAGTACACAATAACACAAAGG 58.389 40.000 0.00 0.00 0.00 3.11
2149 2459 6.829298 TGGAGTACACAATAACACAAAGGAAA 59.171 34.615 0.00 0.00 0.00 3.13
2150 2460 7.136772 GGAGTACACAATAACACAAAGGAAAC 58.863 38.462 0.00 0.00 0.00 2.78
2152 2462 8.967664 AGTACACAATAACACAAAGGAAACTA 57.032 30.769 0.00 0.00 42.68 2.24
2330 2653 1.067295 GGCATCATCCCATAGTCCCA 58.933 55.000 0.00 0.00 0.00 4.37
2331 2654 1.637553 GGCATCATCCCATAGTCCCAT 59.362 52.381 0.00 0.00 0.00 4.00
2332 2655 2.846206 GGCATCATCCCATAGTCCCATA 59.154 50.000 0.00 0.00 0.00 2.74
2333 2656 3.461085 GGCATCATCCCATAGTCCCATAT 59.539 47.826 0.00 0.00 0.00 1.78
2334 2657 4.079558 GGCATCATCCCATAGTCCCATATT 60.080 45.833 0.00 0.00 0.00 1.28
2396 2775 5.993441 GGTCAACTTAACTTACAACCAGCTA 59.007 40.000 0.00 0.00 0.00 3.32
2417 2796 5.065988 GCTAGTTCTTTCAAACTCCACACAA 59.934 40.000 0.00 0.00 40.01 3.33
2418 2797 5.975693 AGTTCTTTCAAACTCCACACAAA 57.024 34.783 0.00 0.00 34.37 2.83
2419 2798 6.530019 AGTTCTTTCAAACTCCACACAAAT 57.470 33.333 0.00 0.00 34.37 2.32
2420 2799 6.935167 AGTTCTTTCAAACTCCACACAAATT 58.065 32.000 0.00 0.00 34.37 1.82
2421 2800 7.386059 AGTTCTTTCAAACTCCACACAAATTT 58.614 30.769 0.00 0.00 34.37 1.82
2422 2801 8.527810 AGTTCTTTCAAACTCCACACAAATTTA 58.472 29.630 0.00 0.00 34.37 1.40
2423 2802 9.313118 GTTCTTTCAAACTCCACACAAATTTAT 57.687 29.630 0.00 0.00 0.00 1.40
2424 2803 9.883142 TTCTTTCAAACTCCACACAAATTTATT 57.117 25.926 0.00 0.00 0.00 1.40
2425 2804 9.883142 TCTTTCAAACTCCACACAAATTTATTT 57.117 25.926 0.00 0.00 0.00 1.40
2462 2841 4.389382 CACACATTATTTGGTGCATGTTGG 59.611 41.667 0.00 0.00 38.57 3.77
2469 2848 0.899253 TGGTGCATGTTGGGTGGATG 60.899 55.000 0.00 0.00 0.00 3.51
2473 2852 1.894466 TGCATGTTGGGTGGATGAAAG 59.106 47.619 0.00 0.00 0.00 2.62
2486 2872 5.354234 GGTGGATGAAAGCCCGTATTATATG 59.646 44.000 0.00 0.00 46.54 1.78
2488 2874 5.937540 TGGATGAAAGCCCGTATTATATGTG 59.062 40.000 0.00 0.00 46.54 3.21
2490 2890 6.128282 GGATGAAAGCCCGTATTATATGTGTG 60.128 42.308 0.00 0.00 35.29 3.82
2494 2894 3.071023 AGCCCGTATTATATGTGTGTGCT 59.929 43.478 0.00 0.00 0.00 4.40
2511 2913 8.453320 TGTGTGTGCTTCTTTATTGATTGATAG 58.547 33.333 0.00 0.00 0.00 2.08
2566 2972 0.757188 AGCTAGGGGACAGGATCACG 60.757 60.000 0.00 0.00 0.00 4.35
2669 3126 2.559698 TGTCCAATCGTCCAATGTGT 57.440 45.000 0.00 0.00 0.00 3.72
2670 3127 2.150390 TGTCCAATCGTCCAATGTGTG 58.850 47.619 0.00 0.00 0.00 3.82
2732 3189 9.599866 CAATATCATTACACAAACCAGTAGAGA 57.400 33.333 0.00 0.00 0.00 3.10
2733 3190 9.823647 AATATCATTACACAAACCAGTAGAGAG 57.176 33.333 0.00 0.00 0.00 3.20
2743 3200 2.494073 ACCAGTAGAGAGTACTGCTTGC 59.506 50.000 0.00 0.00 42.53 4.01
2748 3210 3.760580 AGAGAGTACTGCTTGCAAGTT 57.239 42.857 26.55 14.20 0.00 2.66
2835 3311 1.686052 CCTTTCCTCTCCTCGATCCTG 59.314 57.143 0.00 0.00 0.00 3.86
2856 3332 4.770795 TGTCGAGAGATATGACAGACAGA 58.229 43.478 0.00 0.00 45.19 3.41
2857 3333 4.572795 TGTCGAGAGATATGACAGACAGAC 59.427 45.833 0.00 0.00 45.19 3.51
2858 3334 4.572795 GTCGAGAGATATGACAGACAGACA 59.427 45.833 0.00 0.00 45.19 3.41
2859 3335 4.572795 TCGAGAGATATGACAGACAGACAC 59.427 45.833 0.00 0.00 33.31 3.67
2860 3336 4.333926 CGAGAGATATGACAGACAGACACA 59.666 45.833 0.00 0.00 0.00 3.72
2861 3337 5.574891 AGAGATATGACAGACAGACACAC 57.425 43.478 0.00 0.00 0.00 3.82
2862 3338 4.400884 AGAGATATGACAGACAGACACACC 59.599 45.833 0.00 0.00 0.00 4.16
2863 3339 3.129462 AGATATGACAGACAGACACACCG 59.871 47.826 0.00 0.00 0.00 4.94
3029 3550 4.529897 AGTGCTTTTGATCATGGCATCTA 58.470 39.130 16.72 0.00 35.37 1.98
3071 3596 5.389520 TCTATCGATTTCCTCACAGGAGAT 58.610 41.667 1.71 0.00 46.73 2.75
3072 3597 3.808466 TCGATTTCCTCACAGGAGATG 57.192 47.619 0.38 0.00 46.73 2.90
3073 3598 3.365472 TCGATTTCCTCACAGGAGATGA 58.635 45.455 0.38 0.00 46.73 2.92
3190 3724 1.873591 CAAGTGCCACAGTACCTCAAC 59.126 52.381 0.00 0.00 0.00 3.18
3191 3725 0.396811 AGTGCCACAGTACCTCAACC 59.603 55.000 0.00 0.00 0.00 3.77
3192 3726 0.396811 GTGCCACAGTACCTCAACCT 59.603 55.000 0.00 0.00 0.00 3.50
3193 3727 0.685097 TGCCACAGTACCTCAACCTC 59.315 55.000 0.00 0.00 0.00 3.85
3194 3728 0.685097 GCCACAGTACCTCAACCTCA 59.315 55.000 0.00 0.00 0.00 3.86
3195 3729 1.071699 GCCACAGTACCTCAACCTCAA 59.928 52.381 0.00 0.00 0.00 3.02
3292 3871 3.308401 TCTCCTAGTGCATGCCTGATAA 58.692 45.455 16.68 0.00 0.00 1.75
3534 4162 2.427080 GATCGATCCGACGGCGTC 60.427 66.667 29.06 29.06 39.18 5.19
3547 4175 1.661821 GGCGTCCCTTGATCGATCG 60.662 63.158 20.03 9.36 0.00 3.69
3697 4334 6.166279 TGTACTCATTCTTCAGGTTCATCAC 58.834 40.000 0.00 0.00 0.00 3.06
3742 4383 2.806009 GGCCAGCTAGCTGAGAGGG 61.806 68.421 40.03 26.36 46.30 4.30
3768 4415 7.605309 GCTGAATTATGTCATAGTGATCATCCA 59.395 37.037 0.00 0.00 0.00 3.41
3948 4608 9.856488 TTTCATTCTCTACGGATATATTGTAGC 57.144 33.333 15.90 0.00 36.41 3.58
4162 5103 1.290203 ATCGGCATGCGTAAGTTCTG 58.710 50.000 12.44 0.00 41.68 3.02
4226 5169 2.456119 CGTTGCAGTCCTGATCGGC 61.456 63.158 0.00 0.00 0.00 5.54
4249 5192 5.222631 CACCAACCAAGCAAGAGTATTTTC 58.777 41.667 0.00 0.00 0.00 2.29
4258 5201 9.255304 CCAAGCAAGAGTATTTTCTAGAGTATC 57.745 37.037 0.00 0.00 0.00 2.24
4284 5227 6.710744 GGGTAAGAAAGATGAACTCAACAGAA 59.289 38.462 0.00 0.00 0.00 3.02
4292 5235 3.309296 TGAACTCAACAGAACTCTCCCT 58.691 45.455 0.00 0.00 0.00 4.20
4376 5319 0.109597 CGTGGCACAGAAATTCAGGC 60.110 55.000 19.09 0.00 41.80 4.85
4397 5340 0.249155 AGTTCGACACGCCGAGAAAA 60.249 50.000 0.00 0.00 39.90 2.29
4398 5341 0.578211 GTTCGACACGCCGAGAAAAA 59.422 50.000 0.00 0.00 39.90 1.94
4401 5344 1.438222 GACACGCCGAGAAAAACGC 60.438 57.895 0.00 0.00 0.00 4.84
4417 5360 1.800805 ACGCCTGAATCTCAACTGTG 58.199 50.000 0.00 0.00 0.00 3.66
4434 5377 2.684881 CTGTGGTCTTGCACTGAAACTT 59.315 45.455 0.00 0.00 0.00 2.66
4438 5381 2.682856 GGTCTTGCACTGAAACTTGACA 59.317 45.455 0.00 0.00 0.00 3.58
4439 5382 3.242870 GGTCTTGCACTGAAACTTGACAG 60.243 47.826 0.00 0.00 39.65 3.51
4440 5383 3.623060 GTCTTGCACTGAAACTTGACAGA 59.377 43.478 0.00 0.00 37.54 3.41
4441 5384 4.274459 GTCTTGCACTGAAACTTGACAGAT 59.726 41.667 0.00 0.00 37.54 2.90
4442 5385 4.274214 TCTTGCACTGAAACTTGACAGATG 59.726 41.667 0.00 0.00 37.54 2.90
4443 5386 2.880268 TGCACTGAAACTTGACAGATGG 59.120 45.455 0.00 0.00 37.54 3.51
4444 5387 2.227388 GCACTGAAACTTGACAGATGGG 59.773 50.000 0.00 0.00 37.54 4.00
4445 5388 2.227388 CACTGAAACTTGACAGATGGGC 59.773 50.000 0.00 0.00 37.54 5.36
4446 5389 1.466167 CTGAAACTTGACAGATGGGCG 59.534 52.381 0.00 0.00 36.38 6.13
4447 5390 0.169009 GAAACTTGACAGATGGGCGC 59.831 55.000 0.00 0.00 0.00 6.53
4448 5391 0.250901 AAACTTGACAGATGGGCGCT 60.251 50.000 7.64 0.00 0.00 5.92
4449 5392 0.957395 AACTTGACAGATGGGCGCTG 60.957 55.000 7.64 0.00 39.26 5.18
4450 5393 1.078918 CTTGACAGATGGGCGCTGA 60.079 57.895 7.64 0.00 36.86 4.26
4451 5394 1.078918 TTGACAGATGGGCGCTGAG 60.079 57.895 7.64 0.00 36.86 3.35
4462 5405 4.983628 CGCTGAGCACAAGAGTCT 57.016 55.556 4.88 0.00 0.00 3.24
4463 5406 3.207677 CGCTGAGCACAAGAGTCTT 57.792 52.632 4.88 0.00 0.00 3.01
4464 5407 0.788995 CGCTGAGCACAAGAGTCTTG 59.211 55.000 27.66 27.66 0.00 3.02
4465 5408 0.516439 GCTGAGCACAAGAGTCTTGC 59.484 55.000 28.88 19.03 36.45 4.01
4466 5409 1.155042 CTGAGCACAAGAGTCTTGCC 58.845 55.000 28.88 20.62 36.91 4.52
4467 5410 0.469494 TGAGCACAAGAGTCTTGCCA 59.531 50.000 28.88 19.14 36.91 4.92
4468 5411 1.072806 TGAGCACAAGAGTCTTGCCAT 59.927 47.619 28.88 16.46 36.91 4.40
4469 5412 2.302733 TGAGCACAAGAGTCTTGCCATA 59.697 45.455 28.88 11.89 36.91 2.74
4470 5413 2.935201 GAGCACAAGAGTCTTGCCATAG 59.065 50.000 28.88 16.13 36.91 2.23
4471 5414 1.399791 GCACAAGAGTCTTGCCATAGC 59.600 52.381 28.88 20.79 40.48 2.97
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
119 120 2.093467 CGTTGTTTTGGGTTTTGCACAG 59.907 45.455 0.00 0.00 0.00 3.66
177 178 3.400255 TGTGATCCTATCTCGACTACCG 58.600 50.000 0.00 0.00 40.25 4.02
197 199 1.522258 GGTTTTGACGTGCATGCTTTG 59.478 47.619 20.33 10.87 0.00 2.77
272 274 9.629878 ATTGTCTTGTAGTAGTACTAGTATGCT 57.370 33.333 18.28 7.75 34.63 3.79
273 275 9.881529 GATTGTCTTGTAGTAGTACTAGTATGC 57.118 37.037 18.28 8.94 34.63 3.14
316 366 0.875059 GCAACTGCACTACTTGGGTC 59.125 55.000 0.00 0.00 41.59 4.46
317 367 0.474184 AGCAACTGCACTACTTGGGT 59.526 50.000 4.22 0.00 45.16 4.51
345 441 1.135315 CCAAGTGGCCGATCACAATTG 60.135 52.381 3.24 3.24 40.98 2.32
350 446 1.816074 TAAACCAAGTGGCCGATCAC 58.184 50.000 0.00 0.00 39.32 3.06
370 466 2.021457 ACACGCCACTAAGCAGTTTTT 58.979 42.857 0.00 0.00 30.46 1.94
371 467 1.333619 CACACGCCACTAAGCAGTTTT 59.666 47.619 0.00 0.00 30.46 2.43
372 468 0.944386 CACACGCCACTAAGCAGTTT 59.056 50.000 0.00 0.00 30.46 2.66
373 469 0.105964 TCACACGCCACTAAGCAGTT 59.894 50.000 0.00 0.00 30.46 3.16
374 470 0.321671 ATCACACGCCACTAAGCAGT 59.678 50.000 0.00 0.00 34.42 4.40
375 471 1.442769 AATCACACGCCACTAAGCAG 58.557 50.000 0.00 0.00 0.00 4.24
376 472 1.804151 GAAATCACACGCCACTAAGCA 59.196 47.619 0.00 0.00 0.00 3.91
377 473 1.804151 TGAAATCACACGCCACTAAGC 59.196 47.619 0.00 0.00 0.00 3.09
378 474 3.249799 TGTTGAAATCACACGCCACTAAG 59.750 43.478 0.00 0.00 0.00 2.18
379 475 3.002862 GTGTTGAAATCACACGCCACTAA 59.997 43.478 0.00 0.00 36.05 2.24
380 476 2.546368 GTGTTGAAATCACACGCCACTA 59.454 45.455 0.00 0.00 36.05 2.74
381 477 1.333619 GTGTTGAAATCACACGCCACT 59.666 47.619 0.00 0.00 36.05 4.00
382 478 1.333619 AGTGTTGAAATCACACGCCAC 59.666 47.619 0.00 0.00 39.18 5.01
383 479 1.674359 AGTGTTGAAATCACACGCCA 58.326 45.000 0.00 0.00 39.18 5.69
384 480 4.403453 GAATAGTGTTGAAATCACACGCC 58.597 43.478 0.00 0.00 39.18 5.68
385 481 4.083537 TGGAATAGTGTTGAAATCACACGC 60.084 41.667 0.00 6.10 39.18 5.34
386 482 5.408299 TCTGGAATAGTGTTGAAATCACACG 59.592 40.000 0.00 0.00 39.18 4.49
387 483 6.128172 CCTCTGGAATAGTGTTGAAATCACAC 60.128 42.308 0.00 7.57 38.16 3.82
388 484 5.939883 CCTCTGGAATAGTGTTGAAATCACA 59.060 40.000 0.00 0.00 38.16 3.58
389 485 5.940470 ACCTCTGGAATAGTGTTGAAATCAC 59.060 40.000 0.00 0.00 36.22 3.06
390 486 6.126863 ACCTCTGGAATAGTGTTGAAATCA 57.873 37.500 0.00 0.00 0.00 2.57
391 487 9.262358 GTATACCTCTGGAATAGTGTTGAAATC 57.738 37.037 0.00 0.00 0.00 2.17
392 488 7.926555 CGTATACCTCTGGAATAGTGTTGAAAT 59.073 37.037 0.00 0.00 0.00 2.17
393 489 7.123098 TCGTATACCTCTGGAATAGTGTTGAAA 59.877 37.037 0.00 0.00 0.00 2.69
394 490 6.604396 TCGTATACCTCTGGAATAGTGTTGAA 59.396 38.462 0.00 0.00 0.00 2.69
395 491 6.039047 GTCGTATACCTCTGGAATAGTGTTGA 59.961 42.308 0.00 0.00 0.00 3.18
396 492 6.183360 TGTCGTATACCTCTGGAATAGTGTTG 60.183 42.308 0.00 0.00 0.00 3.33
397 493 5.889853 TGTCGTATACCTCTGGAATAGTGTT 59.110 40.000 0.00 0.00 0.00 3.32
398 494 5.443283 TGTCGTATACCTCTGGAATAGTGT 58.557 41.667 0.00 0.00 0.00 3.55
399 495 6.387041 TTGTCGTATACCTCTGGAATAGTG 57.613 41.667 0.00 0.00 0.00 2.74
400 496 7.414222 TTTTGTCGTATACCTCTGGAATAGT 57.586 36.000 0.00 0.00 0.00 2.12
401 497 8.888579 ATTTTTGTCGTATACCTCTGGAATAG 57.111 34.615 0.00 0.00 0.00 1.73
402 498 9.104965 CAATTTTTGTCGTATACCTCTGGAATA 57.895 33.333 0.00 0.00 0.00 1.75
403 499 7.610305 ACAATTTTTGTCGTATACCTCTGGAAT 59.390 33.333 0.00 0.00 40.56 3.01
404 500 6.938030 ACAATTTTTGTCGTATACCTCTGGAA 59.062 34.615 0.00 0.00 40.56 3.53
405 501 6.370442 CACAATTTTTGTCGTATACCTCTGGA 59.630 38.462 0.00 0.00 43.23 3.86
406 502 6.403200 CCACAATTTTTGTCGTATACCTCTGG 60.403 42.308 0.00 0.00 43.23 3.86
407 503 6.403200 CCCACAATTTTTGTCGTATACCTCTG 60.403 42.308 0.00 0.00 43.23 3.35
408 504 5.646360 CCCACAATTTTTGTCGTATACCTCT 59.354 40.000 0.00 0.00 43.23 3.69
409 505 5.644636 TCCCACAATTTTTGTCGTATACCTC 59.355 40.000 0.00 0.00 43.23 3.85
410 506 5.562635 TCCCACAATTTTTGTCGTATACCT 58.437 37.500 0.00 0.00 43.23 3.08
411 507 5.644636 TCTCCCACAATTTTTGTCGTATACC 59.355 40.000 0.00 0.00 43.23 2.73
412 508 6.592607 TCTCTCCCACAATTTTTGTCGTATAC 59.407 38.462 0.00 0.00 43.23 1.47
413 509 6.592607 GTCTCTCCCACAATTTTTGTCGTATA 59.407 38.462 0.00 0.00 43.23 1.47
414 510 5.411669 GTCTCTCCCACAATTTTTGTCGTAT 59.588 40.000 0.00 0.00 43.23 3.06
415 511 4.753107 GTCTCTCCCACAATTTTTGTCGTA 59.247 41.667 0.00 0.00 43.23 3.43
416 512 3.564225 GTCTCTCCCACAATTTTTGTCGT 59.436 43.478 0.00 0.00 43.23 4.34
417 513 3.058224 GGTCTCTCCCACAATTTTTGTCG 60.058 47.826 0.00 0.00 43.23 4.35
418 514 4.145052 AGGTCTCTCCCACAATTTTTGTC 58.855 43.478 0.00 0.00 43.23 3.18
419 515 4.141158 AGAGGTCTCTCCCACAATTTTTGT 60.141 41.667 0.00 0.00 41.88 2.83
420 516 4.401925 AGAGGTCTCTCCCACAATTTTTG 58.598 43.478 0.00 0.00 40.83 2.44
421 517 4.731313 AGAGGTCTCTCCCACAATTTTT 57.269 40.909 0.00 0.00 40.83 1.94
422 518 5.251700 ACATAGAGGTCTCTCCCACAATTTT 59.748 40.000 3.49 0.00 40.83 1.82
423 519 4.785376 ACATAGAGGTCTCTCCCACAATTT 59.215 41.667 3.49 0.00 40.83 1.82
424 520 4.366267 ACATAGAGGTCTCTCCCACAATT 58.634 43.478 3.49 0.00 40.83 2.32
425 521 4.000928 ACATAGAGGTCTCTCCCACAAT 57.999 45.455 3.49 0.00 40.83 2.71
426 522 3.474798 ACATAGAGGTCTCTCCCACAA 57.525 47.619 3.49 0.00 40.83 3.33
427 523 3.366396 GAACATAGAGGTCTCTCCCACA 58.634 50.000 3.49 0.00 40.83 4.17
428 524 2.696187 GGAACATAGAGGTCTCTCCCAC 59.304 54.545 3.49 0.00 40.83 4.61
429 525 2.587777 AGGAACATAGAGGTCTCTCCCA 59.412 50.000 3.49 0.00 40.83 4.37
430 526 3.227614 GAGGAACATAGAGGTCTCTCCC 58.772 54.545 3.49 0.72 40.83 4.30
431 527 3.888930 CTGAGGAACATAGAGGTCTCTCC 59.111 52.174 3.49 0.00 40.83 3.71
432 528 4.578928 GTCTGAGGAACATAGAGGTCTCTC 59.421 50.000 3.49 0.00 40.93 3.20
433 529 4.532834 GTCTGAGGAACATAGAGGTCTCT 58.467 47.826 5.76 5.76 43.40 3.10
434 530 3.314080 CGTCTGAGGAACATAGAGGTCTC 59.686 52.174 0.00 0.00 33.21 3.36
435 531 3.283751 CGTCTGAGGAACATAGAGGTCT 58.716 50.000 0.00 0.00 33.21 3.85
436 532 2.223618 GCGTCTGAGGAACATAGAGGTC 60.224 54.545 0.82 0.00 33.33 3.85
437 533 1.751924 GCGTCTGAGGAACATAGAGGT 59.248 52.381 0.82 0.00 33.33 3.85
438 534 1.067821 GGCGTCTGAGGAACATAGAGG 59.932 57.143 0.82 0.00 33.70 3.69
439 535 1.751351 TGGCGTCTGAGGAACATAGAG 59.249 52.381 0.82 0.00 0.00 2.43
440 536 1.847328 TGGCGTCTGAGGAACATAGA 58.153 50.000 0.82 0.00 0.00 1.98
441 537 2.672961 TTGGCGTCTGAGGAACATAG 57.327 50.000 0.82 0.00 0.00 2.23
442 538 2.236146 ACATTGGCGTCTGAGGAACATA 59.764 45.455 0.82 0.00 0.00 2.29
443 539 1.003580 ACATTGGCGTCTGAGGAACAT 59.996 47.619 0.82 0.00 0.00 2.71
444 540 0.396435 ACATTGGCGTCTGAGGAACA 59.604 50.000 0.82 0.00 0.00 3.18
445 541 1.523758 AACATTGGCGTCTGAGGAAC 58.476 50.000 0.82 0.00 0.00 3.62
446 542 3.270027 CATAACATTGGCGTCTGAGGAA 58.730 45.455 0.82 0.00 0.00 3.36
447 543 2.419990 CCATAACATTGGCGTCTGAGGA 60.420 50.000 0.82 0.00 0.00 3.71
448 544 1.942657 CCATAACATTGGCGTCTGAGG 59.057 52.381 0.00 0.00 0.00 3.86
449 545 2.905075 TCCATAACATTGGCGTCTGAG 58.095 47.619 0.00 0.00 36.66 3.35
450 546 3.270027 CTTCCATAACATTGGCGTCTGA 58.730 45.455 0.00 0.00 36.66 3.27
451 547 3.009723 ACTTCCATAACATTGGCGTCTG 58.990 45.455 0.00 0.00 36.66 3.51
452 548 3.350219 ACTTCCATAACATTGGCGTCT 57.650 42.857 0.00 0.00 36.66 4.18
453 549 3.181500 GGAACTTCCATAACATTGGCGTC 60.181 47.826 2.62 0.00 36.28 5.19
454 550 2.752903 GGAACTTCCATAACATTGGCGT 59.247 45.455 2.62 0.00 36.28 5.68
455 551 3.016736 AGGAACTTCCATAACATTGGCG 58.983 45.455 10.57 0.00 39.61 5.69
456 552 3.131046 CCAGGAACTTCCATAACATTGGC 59.869 47.826 10.57 0.00 39.61 4.52
457 553 4.599041 TCCAGGAACTTCCATAACATTGG 58.401 43.478 10.57 7.06 39.61 3.16
458 554 6.153340 ACAATCCAGGAACTTCCATAACATTG 59.847 38.462 10.57 11.62 39.61 2.82
459 555 6.256053 ACAATCCAGGAACTTCCATAACATT 58.744 36.000 10.57 0.00 39.61 2.71
460 556 5.831103 ACAATCCAGGAACTTCCATAACAT 58.169 37.500 10.57 0.00 39.61 2.71
461 557 5.255397 ACAATCCAGGAACTTCCATAACA 57.745 39.130 10.57 0.00 39.61 2.41
462 558 6.208599 TCAAACAATCCAGGAACTTCCATAAC 59.791 38.462 10.57 0.00 39.61 1.89
463 559 6.310941 TCAAACAATCCAGGAACTTCCATAA 58.689 36.000 10.57 0.00 39.61 1.90
464 560 5.886609 TCAAACAATCCAGGAACTTCCATA 58.113 37.500 10.57 0.00 39.61 2.74
465 561 4.739793 TCAAACAATCCAGGAACTTCCAT 58.260 39.130 10.57 0.00 39.61 3.41
466 562 4.177537 TCAAACAATCCAGGAACTTCCA 57.822 40.909 10.57 0.00 39.61 3.53
467 563 5.529581 TTTCAAACAATCCAGGAACTTCC 57.470 39.130 0.00 0.00 34.60 3.46
468 564 8.576442 TCTTATTTCAAACAATCCAGGAACTTC 58.424 33.333 0.00 0.00 34.60 3.01
469 565 8.477419 TCTTATTTCAAACAATCCAGGAACTT 57.523 30.769 0.00 0.00 34.60 2.66
470 566 8.655935 ATCTTATTTCAAACAATCCAGGAACT 57.344 30.769 0.00 0.00 43.88 3.01
473 569 9.753674 ACTAATCTTATTTCAAACAATCCAGGA 57.246 29.630 0.00 0.00 0.00 3.86
485 581 8.458843 GCAGCTTTTGGTACTAATCTTATTTCA 58.541 33.333 0.00 0.00 0.00 2.69
486 582 7.915923 GGCAGCTTTTGGTACTAATCTTATTTC 59.084 37.037 0.00 0.00 0.00 2.17
487 583 7.615757 AGGCAGCTTTTGGTACTAATCTTATTT 59.384 33.333 0.00 0.00 0.00 1.40
488 584 7.119387 AGGCAGCTTTTGGTACTAATCTTATT 58.881 34.615 0.00 0.00 0.00 1.40
489 585 6.663734 AGGCAGCTTTTGGTACTAATCTTAT 58.336 36.000 0.00 0.00 0.00 1.73
490 586 6.062258 AGGCAGCTTTTGGTACTAATCTTA 57.938 37.500 0.00 0.00 0.00 2.10
491 587 4.923415 AGGCAGCTTTTGGTACTAATCTT 58.077 39.130 0.00 0.00 0.00 2.40
492 588 4.226168 AGAGGCAGCTTTTGGTACTAATCT 59.774 41.667 0.00 0.00 0.00 2.40
493 589 4.333926 CAGAGGCAGCTTTTGGTACTAATC 59.666 45.833 0.00 0.00 0.00 1.75
494 590 4.019321 TCAGAGGCAGCTTTTGGTACTAAT 60.019 41.667 0.00 0.00 0.00 1.73
495 591 3.326588 TCAGAGGCAGCTTTTGGTACTAA 59.673 43.478 0.00 0.00 0.00 2.24
496 592 2.903784 TCAGAGGCAGCTTTTGGTACTA 59.096 45.455 0.00 0.00 0.00 1.82
497 593 1.699634 TCAGAGGCAGCTTTTGGTACT 59.300 47.619 0.00 0.00 0.00 2.73
498 594 2.185004 TCAGAGGCAGCTTTTGGTAC 57.815 50.000 0.00 0.00 0.00 3.34
499 595 3.439857 AATCAGAGGCAGCTTTTGGTA 57.560 42.857 0.00 0.00 0.00 3.25
500 596 2.299326 AATCAGAGGCAGCTTTTGGT 57.701 45.000 0.00 0.00 0.00 3.67
501 597 2.559668 TGAAATCAGAGGCAGCTTTTGG 59.440 45.455 0.00 0.00 0.00 3.28
502 598 3.834610 CTGAAATCAGAGGCAGCTTTTG 58.165 45.455 4.37 0.00 46.59 2.44
509 605 9.197028 CCAAATTGGATTCTGAAATCAGAGGCA 62.197 40.741 6.04 0.03 46.28 4.75
510 606 6.903542 CCAAATTGGATTCTGAAATCAGAGGC 60.904 42.308 6.04 8.99 46.28 4.70
511 607 6.379133 TCCAAATTGGATTCTGAAATCAGAGG 59.621 38.462 11.23 7.89 46.56 3.69
512 608 7.400599 TCCAAATTGGATTCTGAAATCAGAG 57.599 36.000 11.23 0.00 46.56 3.35
528 624 6.642430 TCTCCATAGCCAATTTTCCAAATTG 58.358 36.000 12.97 12.97 37.38 2.32
529 625 6.872585 TCTCCATAGCCAATTTTCCAAATT 57.127 33.333 0.00 0.00 0.00 1.82
530 626 7.441903 AATCTCCATAGCCAATTTTCCAAAT 57.558 32.000 0.00 0.00 0.00 2.32
531 627 6.872585 AATCTCCATAGCCAATTTTCCAAA 57.127 33.333 0.00 0.00 0.00 3.28
532 628 6.872585 AAATCTCCATAGCCAATTTTCCAA 57.127 33.333 0.00 0.00 0.00 3.53
533 629 6.213195 ACAAAATCTCCATAGCCAATTTTCCA 59.787 34.615 0.00 0.00 29.54 3.53
534 630 6.536224 CACAAAATCTCCATAGCCAATTTTCC 59.464 38.462 0.00 0.00 29.54 3.13
535 631 6.036408 GCACAAAATCTCCATAGCCAATTTTC 59.964 38.462 0.00 0.00 29.54 2.29
536 632 5.876460 GCACAAAATCTCCATAGCCAATTTT 59.124 36.000 0.00 0.00 31.54 1.82
537 633 5.422145 GCACAAAATCTCCATAGCCAATTT 58.578 37.500 0.00 0.00 0.00 1.82
538 634 4.440525 CGCACAAAATCTCCATAGCCAATT 60.441 41.667 0.00 0.00 0.00 2.32
539 635 3.067180 CGCACAAAATCTCCATAGCCAAT 59.933 43.478 0.00 0.00 0.00 3.16
540 636 2.423185 CGCACAAAATCTCCATAGCCAA 59.577 45.455 0.00 0.00 0.00 4.52
541 637 2.016318 CGCACAAAATCTCCATAGCCA 58.984 47.619 0.00 0.00 0.00 4.75
542 638 1.334869 CCGCACAAAATCTCCATAGCC 59.665 52.381 0.00 0.00 0.00 3.93
543 639 2.017049 ACCGCACAAAATCTCCATAGC 58.983 47.619 0.00 0.00 0.00 2.97
544 640 3.270027 TGACCGCACAAAATCTCCATAG 58.730 45.455 0.00 0.00 0.00 2.23
545 641 3.055458 TCTGACCGCACAAAATCTCCATA 60.055 43.478 0.00 0.00 0.00 2.74
546 642 2.086869 CTGACCGCACAAAATCTCCAT 58.913 47.619 0.00 0.00 0.00 3.41
547 643 1.071542 TCTGACCGCACAAAATCTCCA 59.928 47.619 0.00 0.00 0.00 3.86
548 644 1.734465 CTCTGACCGCACAAAATCTCC 59.266 52.381 0.00 0.00 0.00 3.71
549 645 2.688507 TCTCTGACCGCACAAAATCTC 58.311 47.619 0.00 0.00 0.00 2.75
550 646 2.839486 TCTCTGACCGCACAAAATCT 57.161 45.000 0.00 0.00 0.00 2.40
551 647 3.436704 TGAATCTCTGACCGCACAAAATC 59.563 43.478 0.00 0.00 0.00 2.17
552 648 3.411446 TGAATCTCTGACCGCACAAAAT 58.589 40.909 0.00 0.00 0.00 1.82
553 649 2.844946 TGAATCTCTGACCGCACAAAA 58.155 42.857 0.00 0.00 0.00 2.44
554 650 2.542020 TGAATCTCTGACCGCACAAA 57.458 45.000 0.00 0.00 0.00 2.83
555 651 2.768253 ATGAATCTCTGACCGCACAA 57.232 45.000 0.00 0.00 0.00 3.33
556 652 2.495669 TGTATGAATCTCTGACCGCACA 59.504 45.455 0.00 0.00 0.00 4.57
557 653 3.119291 CTGTATGAATCTCTGACCGCAC 58.881 50.000 0.00 0.00 0.00 5.34
558 654 3.023832 TCTGTATGAATCTCTGACCGCA 58.976 45.455 0.00 0.00 0.00 5.69
559 655 3.181486 TGTCTGTATGAATCTCTGACCGC 60.181 47.826 0.00 0.00 32.03 5.68
560 656 4.639135 TGTCTGTATGAATCTCTGACCG 57.361 45.455 0.00 0.00 32.03 4.79
561 657 7.044181 TGAATTGTCTGTATGAATCTCTGACC 58.956 38.462 0.00 0.00 32.03 4.02
562 658 8.484641 TTGAATTGTCTGTATGAATCTCTGAC 57.515 34.615 0.00 0.00 0.00 3.51
563 659 9.159364 CTTTGAATTGTCTGTATGAATCTCTGA 57.841 33.333 0.00 0.00 0.00 3.27
564 660 9.159364 TCTTTGAATTGTCTGTATGAATCTCTG 57.841 33.333 0.00 0.00 0.00 3.35
565 661 9.160496 GTCTTTGAATTGTCTGTATGAATCTCT 57.840 33.333 0.00 0.00 0.00 3.10
566 662 9.160496 AGTCTTTGAATTGTCTGTATGAATCTC 57.840 33.333 0.00 0.00 0.00 2.75
567 663 9.512588 AAGTCTTTGAATTGTCTGTATGAATCT 57.487 29.630 0.00 0.00 0.00 2.40
568 664 9.552114 CAAGTCTTTGAATTGTCTGTATGAATC 57.448 33.333 0.37 0.00 36.36 2.52
569 665 8.517878 CCAAGTCTTTGAATTGTCTGTATGAAT 58.482 33.333 6.93 0.00 36.13 2.57
570 666 7.522073 GCCAAGTCTTTGAATTGTCTGTATGAA 60.522 37.037 6.93 0.00 36.13 2.57
571 667 6.072508 GCCAAGTCTTTGAATTGTCTGTATGA 60.073 38.462 6.93 0.00 36.13 2.15
572 668 6.072286 AGCCAAGTCTTTGAATTGTCTGTATG 60.072 38.462 6.93 0.00 36.13 2.39
573 669 6.006449 AGCCAAGTCTTTGAATTGTCTGTAT 58.994 36.000 6.93 0.00 36.13 2.29
574 670 5.376625 AGCCAAGTCTTTGAATTGTCTGTA 58.623 37.500 6.93 0.00 36.13 2.74
575 671 4.210331 AGCCAAGTCTTTGAATTGTCTGT 58.790 39.130 6.93 0.00 36.13 3.41
576 672 4.612259 CGAGCCAAGTCTTTGAATTGTCTG 60.612 45.833 6.93 0.00 36.13 3.51
577 673 3.499918 CGAGCCAAGTCTTTGAATTGTCT 59.500 43.478 6.93 0.00 36.13 3.41
578 674 3.251004 ACGAGCCAAGTCTTTGAATTGTC 59.749 43.478 6.93 0.00 36.13 3.18
579 675 3.214328 ACGAGCCAAGTCTTTGAATTGT 58.786 40.909 6.93 0.00 36.13 2.71
650 746 1.421268 AGCAACCCAAGATCAGTCACA 59.579 47.619 0.00 0.00 0.00 3.58
712 810 2.987413 TGCGTCAGCTTGGTAATTTG 57.013 45.000 0.00 0.00 45.42 2.32
713 811 3.836949 CATTGCGTCAGCTTGGTAATTT 58.163 40.909 0.00 0.00 45.42 1.82
851 954 3.034635 AGCTAAGATGAGGGGTAGTGTG 58.965 50.000 0.00 0.00 0.00 3.82
852 955 3.301274 GAGCTAAGATGAGGGGTAGTGT 58.699 50.000 0.00 0.00 0.00 3.55
906 1013 1.968540 GGGAGTGGTGAGTGCTTGC 60.969 63.158 0.00 0.00 0.00 4.01
946 1053 3.918253 TTGGCCGATCTGGGTGTGC 62.918 63.158 0.00 0.00 38.63 4.57
948 1055 1.488705 TTCTTGGCCGATCTGGGTGT 61.489 55.000 0.00 0.00 38.63 4.16
950 1057 0.322546 GTTTCTTGGCCGATCTGGGT 60.323 55.000 0.00 0.00 38.63 4.51
952 1059 1.369091 CCGTTTCTTGGCCGATCTGG 61.369 60.000 0.00 0.00 42.50 3.86
1024 1154 4.783621 GTGCATGGCCGGAGCAGA 62.784 66.667 15.74 0.00 42.56 4.26
1056 1186 2.917227 TGTGAGACAGCTCCGCCA 60.917 61.111 0.00 0.00 40.55 5.69
1057 1187 2.433318 GTGTGAGACAGCTCCGCC 60.433 66.667 0.00 0.00 40.55 6.13
1058 1188 2.807045 CGTGTGAGACAGCTCCGC 60.807 66.667 0.00 0.00 40.55 5.54
1287 1426 4.221422 GCCGGGTCGCTGATGCTA 62.221 66.667 2.18 0.00 36.97 3.49
1455 1616 7.178628 ACGGGAGTACATAAGTATGCATCTAAT 59.821 37.037 0.19 0.00 44.60 1.73
1511 1684 4.640805 AGTTAAAACAGACGCACATACG 57.359 40.909 0.00 0.00 39.50 3.06
1522 1695 6.329496 TGCTCCTGTGAAAAAGTTAAAACAG 58.671 36.000 0.00 0.00 35.82 3.16
1993 2179 2.164026 GCACGCTAGTCTGCTCAGC 61.164 63.158 0.00 0.00 0.00 4.26
2144 2454 7.186268 TGGCCACCTATTTATTTTAGTTTCCT 58.814 34.615 0.00 0.00 0.00 3.36
2152 2462 8.831738 AGGTTTTATTGGCCACCTATTTATTTT 58.168 29.630 3.88 0.00 37.91 1.82
2396 2775 5.975693 TTTGTGTGGAGTTTGAAAGAACT 57.024 34.783 0.00 0.00 42.31 3.01
2425 2804 7.537596 AATAATGTGTGTGGGATCTCAAAAA 57.462 32.000 0.00 0.00 0.00 1.94
2426 2805 7.377398 CAAATAATGTGTGTGGGATCTCAAAA 58.623 34.615 0.00 0.00 0.00 2.44
2427 2806 6.071447 CCAAATAATGTGTGTGGGATCTCAAA 60.071 38.462 0.00 0.00 0.00 2.69
2428 2807 5.418524 CCAAATAATGTGTGTGGGATCTCAA 59.581 40.000 0.00 0.00 0.00 3.02
2429 2808 4.949238 CCAAATAATGTGTGTGGGATCTCA 59.051 41.667 0.00 0.00 0.00 3.27
2430 2809 4.949856 ACCAAATAATGTGTGTGGGATCTC 59.050 41.667 0.00 0.00 33.43 2.75
2431 2810 4.706476 CACCAAATAATGTGTGTGGGATCT 59.294 41.667 0.00 0.00 33.43 2.75
2432 2811 4.677779 GCACCAAATAATGTGTGTGGGATC 60.678 45.833 0.00 0.00 34.56 3.36
2433 2812 3.195396 GCACCAAATAATGTGTGTGGGAT 59.805 43.478 0.00 0.00 34.56 3.85
2434 2813 2.560542 GCACCAAATAATGTGTGTGGGA 59.439 45.455 0.00 0.00 34.56 4.37
2435 2814 2.298446 TGCACCAAATAATGTGTGTGGG 59.702 45.455 0.00 0.00 34.56 4.61
2436 2815 3.657015 TGCACCAAATAATGTGTGTGG 57.343 42.857 0.00 0.00 34.56 4.17
2437 2816 4.558178 ACATGCACCAAATAATGTGTGTG 58.442 39.130 0.00 0.00 34.56 3.82
2438 2817 4.870123 ACATGCACCAAATAATGTGTGT 57.130 36.364 0.00 0.00 34.56 3.72
2439 2818 4.389382 CCAACATGCACCAAATAATGTGTG 59.611 41.667 0.00 0.00 33.65 3.82
2440 2819 4.563168 CCCAACATGCACCAAATAATGTGT 60.563 41.667 0.00 0.00 33.65 3.72
2441 2820 3.933955 CCCAACATGCACCAAATAATGTG 59.066 43.478 0.00 0.00 33.65 3.21
2442 2821 3.582208 ACCCAACATGCACCAAATAATGT 59.418 39.130 0.00 0.00 34.79 2.71
2462 2841 2.052782 AATACGGGCTTTCATCCACC 57.947 50.000 0.00 0.00 0.00 4.61
2469 2848 5.560183 GCACACACATATAATACGGGCTTTC 60.560 44.000 0.00 0.00 0.00 2.62
2473 2852 3.399330 AGCACACACATATAATACGGGC 58.601 45.455 0.00 0.00 0.00 6.13
2486 2872 8.668353 TCTATCAATCAATAAAGAAGCACACAC 58.332 33.333 0.00 0.00 0.00 3.82
2530 2936 2.192263 AGCTTCTCCTTCCTAACCTGG 58.808 52.381 0.00 0.00 0.00 4.45
2566 2972 2.029844 GACGAGCTGTTGGAGTGCC 61.030 63.158 0.00 0.00 0.00 5.01
2644 3050 4.706476 ACATTGGACGATTGGACATGAATT 59.294 37.500 0.00 0.00 0.00 2.17
2669 3126 4.586421 TGGACATTTGGTTTGAGTAATGCA 59.414 37.500 0.00 0.00 32.58 3.96
2670 3127 5.132897 TGGACATTTGGTTTGAGTAATGC 57.867 39.130 0.00 0.00 32.58 3.56
2732 3189 2.638480 TCCAACTTGCAAGCAGTACT 57.362 45.000 26.27 2.45 0.00 2.73
2733 3190 2.162408 GGATCCAACTTGCAAGCAGTAC 59.838 50.000 26.27 12.86 0.00 2.73
2748 3210 9.586732 TGACGATATATATATGATGTGGATCCA 57.413 33.333 11.44 11.44 0.00 3.41
2835 3311 4.572795 TGTCTGTCTGTCATATCTCTCGAC 59.427 45.833 0.00 0.00 0.00 4.20
2853 3329 1.261354 CATGTGTGTTCGGTGTGTCTG 59.739 52.381 0.00 0.00 0.00 3.51
2855 3331 0.041312 GCATGTGTGTTCGGTGTGTC 60.041 55.000 0.00 0.00 0.00 3.67
2856 3332 1.771073 CGCATGTGTGTTCGGTGTGT 61.771 55.000 0.00 0.00 0.00 3.72
2857 3333 1.082821 CGCATGTGTGTTCGGTGTG 60.083 57.895 0.00 0.00 0.00 3.82
2858 3334 1.495584 GACGCATGTGTGTTCGGTGT 61.496 55.000 18.34 0.00 39.12 4.16
2859 3335 1.204062 GACGCATGTGTGTTCGGTG 59.796 57.895 18.34 0.00 39.12 4.94
2860 3336 0.315886 TAGACGCATGTGTGTTCGGT 59.684 50.000 18.34 0.00 39.12 4.69
2861 3337 1.390123 CTTAGACGCATGTGTGTTCGG 59.610 52.381 18.34 2.92 39.12 4.30
2862 3338 2.058798 ACTTAGACGCATGTGTGTTCG 58.941 47.619 18.34 9.64 39.12 3.95
2863 3339 3.318017 AGACTTAGACGCATGTGTGTTC 58.682 45.455 18.34 7.61 39.12 3.18
2948 3430 4.017126 ACTTGATGTACTCGATGGTCTCA 58.983 43.478 0.00 0.00 0.00 3.27
3071 3596 4.642437 CAGTCTCCAACATCTAGCTAGTCA 59.358 45.833 20.10 2.44 0.00 3.41
3072 3597 4.884744 TCAGTCTCCAACATCTAGCTAGTC 59.115 45.833 20.10 0.00 0.00 2.59
3073 3598 4.861196 TCAGTCTCCAACATCTAGCTAGT 58.139 43.478 20.10 5.41 0.00 2.57
3190 3724 2.295349 ACGCCGTGTATATACCTTGAGG 59.705 50.000 10.38 7.42 42.17 3.86
3191 3725 3.305964 CACGCCGTGTATATACCTTGAG 58.694 50.000 9.53 3.25 0.00 3.02
3192 3726 2.034939 CCACGCCGTGTATATACCTTGA 59.965 50.000 16.99 0.00 0.00 3.02
3193 3727 2.223876 ACCACGCCGTGTATATACCTTG 60.224 50.000 16.99 0.00 0.00 3.61
3194 3728 2.034124 ACCACGCCGTGTATATACCTT 58.966 47.619 16.99 0.00 0.00 3.50
3195 3729 1.696063 ACCACGCCGTGTATATACCT 58.304 50.000 16.99 0.00 0.00 3.08
3206 3750 4.465512 GATGCAGCAACCACGCCG 62.466 66.667 0.00 0.00 0.00 6.46
3292 3871 4.630940 CCAAACACAAACAGATGCAAAAGT 59.369 37.500 0.00 0.00 0.00 2.66
3534 4162 1.409064 TCAAGGTCGATCGATCAAGGG 59.591 52.381 28.86 15.07 0.00 3.95
3574 4202 8.773645 CCGTTACAAATTATGATCATGAGCTAA 58.226 33.333 18.72 8.62 0.00 3.09
3725 4362 2.820973 CCCTCTCAGCTAGCTGGC 59.179 66.667 37.60 15.23 43.75 4.85
3742 4383 7.605309 TGGATGATCACTATGACATAATTCAGC 59.395 37.037 0.00 1.21 0.00 4.26
4043 4979 2.560105 ACAAATTCTGAAAGCCCTGCTC 59.440 45.455 0.00 0.00 38.25 4.26
4162 5103 5.117745 CACACAGTATAGAATATGTCTGCGC 59.882 44.000 0.00 0.00 37.12 6.09
4226 5169 4.853924 AAATACTCTTGCTTGGTTGGTG 57.146 40.909 0.00 0.00 0.00 4.17
4249 5192 7.747155 TCATCTTTCTTACCCGATACTCTAG 57.253 40.000 0.00 0.00 0.00 2.43
4258 5201 4.994852 TGTTGAGTTCATCTTTCTTACCCG 59.005 41.667 0.00 0.00 0.00 5.28
4376 5319 0.937699 TTCTCGGCGTGTCGAACTTG 60.938 55.000 6.85 0.00 38.77 3.16
4397 5340 2.146342 CACAGTTGAGATTCAGGCGTT 58.854 47.619 0.00 0.00 0.00 4.84
4398 5341 1.609061 CCACAGTTGAGATTCAGGCGT 60.609 52.381 0.00 0.00 0.00 5.68
4401 5344 3.692257 AGACCACAGTTGAGATTCAGG 57.308 47.619 0.00 0.00 0.00 3.86
4417 5360 2.682856 TGTCAAGTTTCAGTGCAAGACC 59.317 45.455 0.00 0.00 0.00 3.85
4434 5377 2.580815 CTCAGCGCCCATCTGTCA 59.419 61.111 2.29 0.00 33.48 3.58
4438 5381 3.258228 TTGTGCTCAGCGCCCATCT 62.258 57.895 7.99 0.00 38.39 2.90
4439 5382 2.747460 TTGTGCTCAGCGCCCATC 60.747 61.111 7.99 0.00 38.39 3.51
4440 5383 2.749044 CTTGTGCTCAGCGCCCAT 60.749 61.111 7.99 0.00 38.39 4.00
4441 5384 3.889134 CTCTTGTGCTCAGCGCCCA 62.889 63.158 7.99 0.00 38.39 5.36
4442 5385 3.123620 CTCTTGTGCTCAGCGCCC 61.124 66.667 7.99 0.00 38.39 6.13
4443 5386 2.358003 ACTCTTGTGCTCAGCGCC 60.358 61.111 7.99 0.00 38.39 6.53
4444 5387 0.948141 AAGACTCTTGTGCTCAGCGC 60.948 55.000 2.22 2.22 39.75 5.92
4445 5388 0.788995 CAAGACTCTTGTGCTCAGCG 59.211 55.000 10.27 0.00 0.00 5.18
4446 5389 0.516439 GCAAGACTCTTGTGCTCAGC 59.484 55.000 18.16 0.00 35.36 4.26
4447 5390 1.155042 GGCAAGACTCTTGTGCTCAG 58.845 55.000 18.16 0.00 38.36 3.35
4448 5391 0.469494 TGGCAAGACTCTTGTGCTCA 59.531 50.000 18.16 10.10 38.36 4.26
4449 5392 1.818642 ATGGCAAGACTCTTGTGCTC 58.181 50.000 18.16 8.09 38.36 4.26
4450 5393 2.938756 GCTATGGCAAGACTCTTGTGCT 60.939 50.000 18.16 7.29 38.36 4.40
4451 5394 1.399791 GCTATGGCAAGACTCTTGTGC 59.600 52.381 18.16 7.31 38.54 4.57
4452 5395 2.703416 TGCTATGGCAAGACTCTTGTG 58.297 47.619 18.16 6.95 46.36 3.33


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.