Multiple sequence alignment - TraesCS2B01G510700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G510700 chr2B 100.000 2627 0 0 1 2627 706698198 706700824 0.000000e+00 4852.0
1 TraesCS2B01G510700 chr2B 87.341 1335 113 29 436 1740 706567250 706568558 0.000000e+00 1478.0
2 TraesCS2B01G510700 chr2B 83.824 544 46 14 647 1149 770607529 770608071 1.830000e-131 479.0
3 TraesCS2B01G510700 chr2B 85.185 189 15 6 1793 1970 706568551 706568737 5.780000e-42 182.0
4 TraesCS2B01G510700 chr2B 86.667 120 10 2 1794 1913 706421801 706421914 7.630000e-26 128.0
5 TraesCS2B01G510700 chr2D 84.775 1399 115 54 383 1740 585519288 585520629 0.000000e+00 1314.0
6 TraesCS2B01G510700 chr2D 87.009 1170 113 22 573 1724 585636025 585637173 0.000000e+00 1282.0
7 TraesCS2B01G510700 chr2D 79.511 654 106 18 1993 2626 585637513 585638158 8.630000e-120 440.0
8 TraesCS2B01G510700 chr2D 87.097 186 14 6 1793 1970 585520622 585520805 4.430000e-48 202.0
9 TraesCS2B01G510700 chr2D 94.531 128 5 1 1786 1913 585637354 585637479 2.060000e-46 196.0
10 TraesCS2B01G510700 chr2D 94.167 120 6 1 1794 1913 585637175 585637293 5.780000e-42 182.0
11 TraesCS2B01G510700 chr2A 86.838 1208 90 29 569 1737 719685602 719686779 0.000000e+00 1286.0
12 TraesCS2B01G510700 chr2A 86.094 827 60 24 413 1196 719564955 719565769 0.000000e+00 839.0
13 TraesCS2B01G510700 chr2A 88.960 471 41 5 1209 1679 719566222 719566681 2.930000e-159 571.0
14 TraesCS2B01G510700 chr2A 85.458 557 60 6 1168 1724 719626358 719626893 6.350000e-156 560.0
15 TraesCS2B01G510700 chr2A 80.147 816 64 44 211 950 719573558 719574351 1.080000e-143 520.0
16 TraesCS2B01G510700 chr2A 90.756 238 21 1 934 1171 719609748 719609984 1.520000e-82 316.0
17 TraesCS2B01G510700 chr2A 86.387 191 15 7 1788 1970 719566743 719566930 5.740000e-47 198.0
18 TraesCS2B01G510700 chr2A 85.484 186 16 6 1794 1970 719626895 719627078 1.610000e-42 183.0
19 TraesCS2B01G510700 chr6B 83.333 636 77 18 869 1498 57458470 57457858 6.350000e-156 560.0
20 TraesCS2B01G510700 chr6B 83.684 190 13 11 1794 1970 57457704 57457520 2.090000e-36 163.0
21 TraesCS2B01G510700 chr7B 84.191 544 44 14 647 1149 616817212 616816670 8.450000e-135 490.0
22 TraesCS2B01G510700 chr1B 84.007 544 45 14 647 1149 62244917 62245459 3.930000e-133 484.0
23 TraesCS2B01G510700 chr4B 84.015 538 45 13 647 1144 649654645 649654109 1.830000e-131 479.0
24 TraesCS2B01G510700 chr5B 83.640 544 47 14 647 1149 250133961 250134503 8.510000e-130 473.0
25 TraesCS2B01G510700 chr6D 85.175 371 40 12 1263 1632 436404788 436404432 1.490000e-97 366.0
26 TraesCS2B01G510700 chr6D 84.585 253 28 9 930 1173 436405153 436404903 9.400000e-60 241.0
27 TraesCS2B01G510700 chr6D 82.857 175 13 10 1807 1969 30073553 30073722 9.800000e-30 141.0
28 TraesCS2B01G510700 chr6D 91.111 90 4 2 124 209 459716384 459716473 4.590000e-23 119.0
29 TraesCS2B01G510700 chr6A 83.198 369 39 12 1263 1630 584508158 584507812 1.520000e-82 316.0
30 TraesCS2B01G510700 chr6A 82.432 370 42 15 1263 1631 584531225 584530878 4.250000e-78 302.0
31 TraesCS2B01G510700 chr6A 81.818 319 41 8 872 1174 584508591 584508274 4.340000e-63 252.0
32 TraesCS2B01G510700 chr6A 88.333 180 18 3 34 213 534668579 534668755 2.050000e-51 213.0
33 TraesCS2B01G510700 chr6A 88.636 176 19 1 34 209 615730148 615730322 2.050000e-51 213.0
34 TraesCS2B01G510700 chr4A 87.006 177 23 0 34 210 485515943 485515767 1.590000e-47 200.0
35 TraesCS2B01G510700 chr7A 88.000 125 15 0 34 158 110562161 110562037 5.860000e-32 148.0
36 TraesCS2B01G510700 chr7A 88.889 63 6 1 151 212 110556614 110556552 2.800000e-10 76.8
37 TraesCS2B01G510700 chr7A 88.889 63 6 1 151 212 110557619 110557557 2.800000e-10 76.8
38 TraesCS2B01G510700 chr7A 88.889 63 6 1 151 212 110559625 110559563 2.800000e-10 76.8
39 TraesCS2B01G510700 chr7A 88.525 61 5 2 151 209 110558620 110558560 3.630000e-09 73.1
40 TraesCS2B01G510700 chr7A 87.302 63 7 1 151 212 110555614 110555552 1.300000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G510700 chr2B 706698198 706700824 2626 False 4852.0 4852 100.0000 1 2627 1 chr2B.!!$F2 2626
1 TraesCS2B01G510700 chr2B 706567250 706568737 1487 False 830.0 1478 86.2630 436 1970 2 chr2B.!!$F4 1534
2 TraesCS2B01G510700 chr2B 770607529 770608071 542 False 479.0 479 83.8240 647 1149 1 chr2B.!!$F3 502
3 TraesCS2B01G510700 chr2D 585519288 585520805 1517 False 758.0 1314 85.9360 383 1970 2 chr2D.!!$F1 1587
4 TraesCS2B01G510700 chr2D 585636025 585638158 2133 False 525.0 1282 88.8045 573 2626 4 chr2D.!!$F2 2053
5 TraesCS2B01G510700 chr2A 719685602 719686779 1177 False 1286.0 1286 86.8380 569 1737 1 chr2A.!!$F3 1168
6 TraesCS2B01G510700 chr2A 719564955 719566930 1975 False 536.0 839 87.1470 413 1970 3 chr2A.!!$F4 1557
7 TraesCS2B01G510700 chr2A 719573558 719574351 793 False 520.0 520 80.1470 211 950 1 chr2A.!!$F1 739
8 TraesCS2B01G510700 chr2A 719626358 719627078 720 False 371.5 560 85.4710 1168 1970 2 chr2A.!!$F5 802
9 TraesCS2B01G510700 chr6B 57457520 57458470 950 True 361.5 560 83.5085 869 1970 2 chr6B.!!$R1 1101
10 TraesCS2B01G510700 chr7B 616816670 616817212 542 True 490.0 490 84.1910 647 1149 1 chr7B.!!$R1 502
11 TraesCS2B01G510700 chr1B 62244917 62245459 542 False 484.0 484 84.0070 647 1149 1 chr1B.!!$F1 502
12 TraesCS2B01G510700 chr4B 649654109 649654645 536 True 479.0 479 84.0150 647 1144 1 chr4B.!!$R1 497
13 TraesCS2B01G510700 chr5B 250133961 250134503 542 False 473.0 473 83.6400 647 1149 1 chr5B.!!$F1 502
14 TraesCS2B01G510700 chr6D 436404432 436405153 721 True 303.5 366 84.8800 930 1632 2 chr6D.!!$R1 702
15 TraesCS2B01G510700 chr6A 584507812 584508591 779 True 284.0 316 82.5080 872 1630 2 chr6A.!!$R2 758

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
116 117 0.106894 GGTTAGCTTAGAGGCGCCAT 59.893 55.0 31.54 19.69 37.29 4.4 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1956 2790 0.967662 TGTGGGCCAATCACAATGTG 59.032 50.0 8.4 7.12 41.5 3.21 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.850193 AATTGTGGTGGGCTCAGG 57.150 55.556 0.00 0.00 0.00 3.86
18 19 1.077265 AATTGTGGTGGGCTCAGGG 59.923 57.895 0.00 0.00 0.00 4.45
19 20 2.445492 AATTGTGGTGGGCTCAGGGG 62.445 60.000 0.00 0.00 0.00 4.79
22 23 4.346889 TGGTGGGCTCAGGGGCTA 62.347 66.667 0.00 0.00 40.65 3.93
23 24 2.774351 GGTGGGCTCAGGGGCTAT 60.774 66.667 0.00 0.00 40.65 2.97
24 25 2.386935 GGTGGGCTCAGGGGCTATT 61.387 63.158 0.00 0.00 40.65 1.73
25 26 1.152881 GTGGGCTCAGGGGCTATTG 60.153 63.158 0.00 0.00 40.65 1.90
26 27 2.203408 GGGCTCAGGGGCTATTGC 60.203 66.667 0.00 0.00 40.65 3.56
27 28 2.592861 GGCTCAGGGGCTATTGCG 60.593 66.667 0.00 0.00 40.82 4.85
28 29 2.505982 GCTCAGGGGCTATTGCGA 59.494 61.111 0.00 0.00 40.82 5.10
29 30 1.153168 GCTCAGGGGCTATTGCGAA 60.153 57.895 0.00 0.00 40.82 4.70
30 31 0.748005 GCTCAGGGGCTATTGCGAAA 60.748 55.000 0.00 0.00 40.82 3.46
31 32 1.303309 CTCAGGGGCTATTGCGAAAG 58.697 55.000 0.00 0.00 40.82 2.62
49 50 5.271625 CGAAAGCAGAATCATTCATGAAGG 58.728 41.667 13.85 13.85 40.69 3.46
50 51 5.065602 CGAAAGCAGAATCATTCATGAAGGA 59.934 40.000 23.62 23.62 40.69 3.36
51 52 5.831702 AAGCAGAATCATTCATGAAGGAC 57.168 39.130 23.84 12.94 40.69 3.85
52 53 3.875727 AGCAGAATCATTCATGAAGGACG 59.124 43.478 23.84 13.83 40.69 4.79
53 54 3.624861 GCAGAATCATTCATGAAGGACGT 59.375 43.478 23.84 15.19 40.69 4.34
54 55 4.095483 GCAGAATCATTCATGAAGGACGTT 59.905 41.667 23.84 15.59 40.69 3.99
55 56 5.392380 GCAGAATCATTCATGAAGGACGTTT 60.392 40.000 23.84 14.90 40.69 3.60
56 57 6.183360 GCAGAATCATTCATGAAGGACGTTTA 60.183 38.462 23.84 2.19 40.69 2.01
57 58 7.467811 GCAGAATCATTCATGAAGGACGTTTAT 60.468 37.037 23.84 10.10 40.69 1.40
58 59 8.066595 CAGAATCATTCATGAAGGACGTTTATC 58.933 37.037 23.84 14.55 40.69 1.75
59 60 6.867662 ATCATTCATGAAGGACGTTTATCC 57.132 37.500 23.84 0.00 40.69 2.59
60 61 5.123227 TCATTCATGAAGGACGTTTATCCC 58.877 41.667 18.33 0.00 39.91 3.85
61 62 4.561500 TTCATGAAGGACGTTTATCCCA 57.438 40.909 3.38 0.00 39.91 4.37
62 63 4.771114 TCATGAAGGACGTTTATCCCAT 57.229 40.909 0.00 0.00 39.91 4.00
63 64 5.880164 TCATGAAGGACGTTTATCCCATA 57.120 39.130 0.00 0.00 39.91 2.74
64 65 5.607477 TCATGAAGGACGTTTATCCCATAC 58.393 41.667 0.00 0.00 39.91 2.39
65 66 5.365605 TCATGAAGGACGTTTATCCCATACT 59.634 40.000 0.00 0.00 39.91 2.12
66 67 5.018539 TGAAGGACGTTTATCCCATACTG 57.981 43.478 0.00 0.00 39.91 2.74
67 68 4.712829 TGAAGGACGTTTATCCCATACTGA 59.287 41.667 0.00 0.00 39.91 3.41
68 69 5.365605 TGAAGGACGTTTATCCCATACTGAT 59.634 40.000 0.00 0.00 39.91 2.90
69 70 5.215252 AGGACGTTTATCCCATACTGATG 57.785 43.478 0.00 0.00 39.91 3.07
70 71 3.746492 GGACGTTTATCCCATACTGATGC 59.254 47.826 0.00 0.00 31.94 3.91
71 72 4.503296 GGACGTTTATCCCATACTGATGCT 60.503 45.833 0.00 0.00 31.94 3.79
72 73 4.632153 ACGTTTATCCCATACTGATGCTC 58.368 43.478 0.00 0.00 0.00 4.26
73 74 4.100963 ACGTTTATCCCATACTGATGCTCA 59.899 41.667 0.00 0.00 0.00 4.26
74 75 5.221722 ACGTTTATCCCATACTGATGCTCAT 60.222 40.000 0.00 0.00 0.00 2.90
75 76 6.014584 ACGTTTATCCCATACTGATGCTCATA 60.015 38.462 0.00 0.00 0.00 2.15
76 77 6.533012 CGTTTATCCCATACTGATGCTCATAG 59.467 42.308 0.00 0.00 0.00 2.23
77 78 7.390027 GTTTATCCCATACTGATGCTCATAGT 58.610 38.462 0.00 0.00 0.00 2.12
78 79 7.559335 TTATCCCATACTGATGCTCATAGTT 57.441 36.000 0.00 0.00 0.00 2.24
79 80 5.894298 TCCCATACTGATGCTCATAGTTT 57.106 39.130 0.00 0.00 0.00 2.66
80 81 6.994421 TCCCATACTGATGCTCATAGTTTA 57.006 37.500 0.00 0.00 0.00 2.01
81 82 6.997655 TCCCATACTGATGCTCATAGTTTAG 58.002 40.000 0.00 0.00 0.00 1.85
82 83 5.641209 CCCATACTGATGCTCATAGTTTAGC 59.359 44.000 0.00 0.00 39.25 3.09
93 94 8.746922 TGCTCATAGTTTAGCAAAATTTTCTG 57.253 30.769 0.00 0.00 45.36 3.02
94 95 8.359642 TGCTCATAGTTTAGCAAAATTTTCTGT 58.640 29.630 0.00 0.00 45.36 3.41
95 96 9.196552 GCTCATAGTTTAGCAAAATTTTCTGTT 57.803 29.630 0.00 0.00 38.63 3.16
103 104 9.471084 TTTAGCAAAATTTTCTGTTAGGTTAGC 57.529 29.630 0.00 0.00 0.00 3.09
104 105 7.290110 AGCAAAATTTTCTGTTAGGTTAGCT 57.710 32.000 0.00 0.00 0.00 3.32
105 106 7.726216 AGCAAAATTTTCTGTTAGGTTAGCTT 58.274 30.769 0.00 0.00 0.00 3.74
106 107 8.856103 AGCAAAATTTTCTGTTAGGTTAGCTTA 58.144 29.630 0.00 0.00 0.00 3.09
107 108 9.129209 GCAAAATTTTCTGTTAGGTTAGCTTAG 57.871 33.333 0.00 0.00 0.00 2.18
110 111 8.794335 AATTTTCTGTTAGGTTAGCTTAGAGG 57.206 34.615 0.00 0.00 0.00 3.69
111 112 5.340439 TTCTGTTAGGTTAGCTTAGAGGC 57.660 43.478 0.00 0.00 0.00 4.70
112 113 3.380637 TCTGTTAGGTTAGCTTAGAGGCG 59.619 47.826 0.00 0.00 37.29 5.52
113 114 2.159142 TGTTAGGTTAGCTTAGAGGCGC 60.159 50.000 0.00 0.00 37.29 6.53
114 115 1.038280 TAGGTTAGCTTAGAGGCGCC 58.962 55.000 21.89 21.89 37.29 6.53
115 116 0.976073 AGGTTAGCTTAGAGGCGCCA 60.976 55.000 31.54 4.59 37.29 5.69
116 117 0.106894 GGTTAGCTTAGAGGCGCCAT 59.893 55.000 31.54 19.69 37.29 4.40
117 118 1.221414 GTTAGCTTAGAGGCGCCATG 58.779 55.000 31.54 14.14 37.29 3.66
118 119 0.830648 TTAGCTTAGAGGCGCCATGT 59.169 50.000 31.54 15.12 37.29 3.21
119 120 1.699730 TAGCTTAGAGGCGCCATGTA 58.300 50.000 31.54 13.96 37.29 2.29
120 121 1.051812 AGCTTAGAGGCGCCATGTAT 58.948 50.000 31.54 7.13 37.29 2.29
121 122 1.151668 GCTTAGAGGCGCCATGTATG 58.848 55.000 31.54 18.17 0.00 2.39
141 142 1.729284 GCTTTTGCAACCCCATGATG 58.271 50.000 0.00 0.00 46.58 3.07
142 143 1.729284 CTTTTGCAACCCCATGATGC 58.271 50.000 0.00 0.00 40.45 3.91
143 144 1.276989 CTTTTGCAACCCCATGATGCT 59.723 47.619 0.00 0.00 40.66 3.79
144 145 1.350071 TTTGCAACCCCATGATGCTT 58.650 45.000 0.00 0.00 40.66 3.91
145 146 0.896923 TTGCAACCCCATGATGCTTC 59.103 50.000 0.00 0.00 40.66 3.86
146 147 0.251698 TGCAACCCCATGATGCTTCA 60.252 50.000 4.57 4.57 40.66 3.02
147 148 1.117150 GCAACCCCATGATGCTTCAT 58.883 50.000 9.20 9.20 43.51 2.57
157 158 3.929955 TGATGCTTCATGTATCCCACA 57.070 42.857 0.00 0.00 42.69 4.17
159 160 4.795469 TGATGCTTCATGTATCCCACATT 58.205 39.130 0.00 0.00 46.01 2.71
160 161 4.823442 TGATGCTTCATGTATCCCACATTC 59.177 41.667 0.00 0.00 46.01 2.67
161 162 4.508551 TGCTTCATGTATCCCACATTCT 57.491 40.909 0.00 0.00 46.01 2.40
162 163 4.201657 TGCTTCATGTATCCCACATTCTG 58.798 43.478 0.00 0.00 46.01 3.02
163 164 4.202441 GCTTCATGTATCCCACATTCTGT 58.798 43.478 0.00 0.00 46.01 3.41
164 165 4.036027 GCTTCATGTATCCCACATTCTGTG 59.964 45.833 0.24 0.24 46.01 3.66
177 178 5.982324 CACATTCTGTGGTATTCGATGATG 58.018 41.667 0.00 0.00 44.27 3.07
178 179 5.754890 CACATTCTGTGGTATTCGATGATGA 59.245 40.000 0.00 0.00 44.27 2.92
179 180 6.258507 CACATTCTGTGGTATTCGATGATGAA 59.741 38.462 0.00 0.00 44.27 2.57
180 181 6.994496 ACATTCTGTGGTATTCGATGATGAAT 59.006 34.615 0.00 0.00 41.32 2.57
181 182 8.150296 ACATTCTGTGGTATTCGATGATGAATA 58.850 33.333 0.00 0.00 39.27 1.75
182 183 8.992073 CATTCTGTGGTATTCGATGATGAATAA 58.008 33.333 0.00 0.00 41.22 1.40
183 184 8.956533 TTCTGTGGTATTCGATGATGAATAAA 57.043 30.769 0.00 0.00 41.22 1.40
184 185 8.593492 TCTGTGGTATTCGATGATGAATAAAG 57.407 34.615 0.00 0.00 41.22 1.85
185 186 8.204160 TCTGTGGTATTCGATGATGAATAAAGT 58.796 33.333 0.00 0.00 41.22 2.66
186 187 8.731275 TGTGGTATTCGATGATGAATAAAGTT 57.269 30.769 0.00 0.00 41.22 2.66
187 188 9.825109 TGTGGTATTCGATGATGAATAAAGTTA 57.175 29.630 0.00 0.00 41.22 2.24
202 203 9.983024 TGAATAAAGTTATTTATCACCCCTCAA 57.017 29.630 0.00 0.00 40.05 3.02
237 238 3.181475 ACAGTGATCGTGAGTTTGTGACT 60.181 43.478 0.00 0.00 42.70 3.41
267 268 4.021368 TGCTTACTGAAACAGAGAGGGTAC 60.021 45.833 5.76 0.00 35.18 3.34
284 285 3.373130 GGGTACCGCTGAGTGTATTTTTC 59.627 47.826 5.65 0.00 40.86 2.29
288 289 4.642429 ACCGCTGAGTGTATTTTTCTTCT 58.358 39.130 0.00 0.00 0.00 2.85
289 290 5.063880 ACCGCTGAGTGTATTTTTCTTCTT 58.936 37.500 0.00 0.00 0.00 2.52
310 311 6.943981 TCTTCTTTTAATTCGTGTCAGTGTG 58.056 36.000 0.00 0.00 0.00 3.82
313 319 5.235616 TCTTTTAATTCGTGTCAGTGTGGTC 59.764 40.000 0.00 0.00 0.00 4.02
315 321 0.319555 ATTCGTGTCAGTGTGGTCGG 60.320 55.000 0.00 0.00 0.00 4.79
370 402 1.371558 ACCTGTTGCGAGGTTCCTC 59.628 57.895 8.66 8.66 44.53 3.71
391 423 5.525378 CCTCGTTTAATCATCTTCCTTCCTG 59.475 44.000 0.00 0.00 0.00 3.86
394 426 7.265673 TCGTTTAATCATCTTCCTTCCTGTAG 58.734 38.462 0.00 0.00 0.00 2.74
398 430 3.647636 TCATCTTCCTTCCTGTAGGGAG 58.352 50.000 0.00 0.00 46.01 4.30
407 439 0.249073 CCTGTAGGGAGTGCGAATCG 60.249 60.000 0.00 0.00 37.23 3.34
427 459 2.805353 CGGACAAGGACGTCGCTG 60.805 66.667 9.92 11.45 36.73 5.18
465 503 6.295236 CCCTTCTTCTGCATGAACCAAAAATA 60.295 38.462 0.00 0.00 0.00 1.40
466 504 6.810182 CCTTCTTCTGCATGAACCAAAAATAG 59.190 38.462 0.00 0.00 0.00 1.73
491 530 2.198906 AATTCCACACGCATGCACCG 62.199 55.000 19.57 7.49 0.00 4.94
598 645 4.280436 TCCGTTGCTTGATCCTTCTAAA 57.720 40.909 0.00 0.00 0.00 1.85
615 662 4.517285 TCTAAACTGGCTCCATTCATCAC 58.483 43.478 0.00 0.00 0.00 3.06
659 712 2.895865 CGCCCTCGTAGCTCTCGA 60.896 66.667 12.18 12.18 35.96 4.04
729 789 5.012239 ACTCAATGGAGATTTTTGCTGCTA 58.988 37.500 3.42 0.00 44.26 3.49
762 827 2.811799 GCGTTTGGGCCAAGTTGT 59.188 55.556 19.90 0.00 0.00 3.32
783 867 2.899303 TGGAACTTTGGATCCTTCCC 57.101 50.000 21.80 11.70 41.83 3.97
787 871 1.064825 ACTTTGGATCCTTCCCGTGT 58.935 50.000 14.23 0.00 41.83 4.49
792 876 1.400530 GGATCCTTCCCGTGTCCGAT 61.401 60.000 3.84 0.00 35.84 4.18
846 937 0.795735 GCATGCGCACAGTGATTCAC 60.796 55.000 14.90 8.82 38.36 3.18
858 949 3.144506 AGTGATTCACTGAAACCAGCTG 58.855 45.455 18.35 6.78 43.63 4.24
861 952 0.183492 TTCACTGAAACCAGCTGCCT 59.817 50.000 8.66 0.00 35.09 4.75
895 996 1.240256 ATTAAACCGCGGCAACTTGA 58.760 45.000 28.58 10.86 0.00 3.02
918 1019 3.432326 CCTCCTCGCAAGCCTATAAAAGT 60.432 47.826 0.00 0.00 37.18 2.66
922 1024 1.065551 CGCAAGCCTATAAAAGTGGGC 59.934 52.381 0.00 0.00 44.38 5.36
1110 1272 4.814294 GGACTCATCGCCGGCGTT 62.814 66.667 44.16 35.50 40.74 4.84
1124 1286 4.764336 CGTTGTGCCATGCAGCGG 62.764 66.667 0.43 0.43 40.08 5.52
1181 1348 0.684805 CCGAGTAAGGACCTCTGCCT 60.685 60.000 0.00 0.00 37.35 4.75
1196 1395 1.152368 GCCTGCCTCCATAGCCATT 59.848 57.895 0.00 0.00 0.00 3.16
1198 1397 1.612726 GCCTGCCTCCATAGCCATTAG 60.613 57.143 0.00 0.00 0.00 1.73
1199 1398 1.612726 CCTGCCTCCATAGCCATTAGC 60.613 57.143 0.00 0.00 44.25 3.09
1200 1399 0.401738 TGCCTCCATAGCCATTAGCC 59.598 55.000 0.00 0.00 45.47 3.93
1201 1400 0.674895 GCCTCCATAGCCATTAGCCG 60.675 60.000 0.00 0.00 45.47 5.52
1203 1402 1.005037 TCCATAGCCATTAGCCGCG 60.005 57.895 0.00 0.00 45.47 6.46
1204 1403 2.680913 CCATAGCCATTAGCCGCGC 61.681 63.158 0.00 0.00 45.47 6.86
1228 1876 6.360681 GCAAGCAATTATATTCATCAACCGTC 59.639 38.462 0.00 0.00 0.00 4.79
1229 1877 7.642669 CAAGCAATTATATTCATCAACCGTCT 58.357 34.615 0.00 0.00 0.00 4.18
1230 1878 8.773645 CAAGCAATTATATTCATCAACCGTCTA 58.226 33.333 0.00 0.00 0.00 2.59
1231 1879 8.311650 AGCAATTATATTCATCAACCGTCTAC 57.688 34.615 0.00 0.00 0.00 2.59
1260 1925 1.269413 TGCTTTGCTTCTTTGCTCTGC 60.269 47.619 0.00 0.00 0.00 4.26
1269 1934 2.490262 CTTTGCTCTGCACAGACGCG 62.490 60.000 3.53 3.53 38.46 6.01
1633 2310 1.134491 TCTCCGTCGTCTAGATGCTCA 60.134 52.381 7.11 0.00 34.56 4.26
1666 2344 2.913777 TGTCGATCGAAGACACGAAT 57.086 45.000 21.31 0.00 46.03 3.34
1689 2379 9.744468 GAATGGACCTAAATAAATAAATGCGTT 57.256 29.630 0.00 0.00 0.00 4.84
1732 2429 2.572556 TGGTCAACTATCCCCGCTTTTA 59.427 45.455 0.00 0.00 0.00 1.52
1734 2431 4.204799 GGTCAACTATCCCCGCTTTTATT 58.795 43.478 0.00 0.00 0.00 1.40
1736 2433 6.002082 GGTCAACTATCCCCGCTTTTATTAT 58.998 40.000 0.00 0.00 0.00 1.28
1737 2434 6.489022 GGTCAACTATCCCCGCTTTTATTATT 59.511 38.462 0.00 0.00 0.00 1.40
1738 2435 7.662669 GGTCAACTATCCCCGCTTTTATTATTA 59.337 37.037 0.00 0.00 0.00 0.98
1739 2436 9.227777 GTCAACTATCCCCGCTTTTATTATTAT 57.772 33.333 0.00 0.00 0.00 1.28
1901 2727 3.183574 TGTCGTGTGATCAATGTTCGTTC 59.816 43.478 0.00 0.00 0.00 3.95
1913 2739 8.964420 ATCAATGTTCGTTCGTGAAAAATAAT 57.036 26.923 0.00 0.00 0.00 1.28
1970 2804 5.523188 TGTTTCTTTTCACATTGTGATTGGC 59.477 36.000 19.63 7.90 42.40 4.52
1971 2805 4.255833 TCTTTTCACATTGTGATTGGCC 57.744 40.909 19.63 0.00 42.40 5.36
1972 2806 3.006752 TCTTTTCACATTGTGATTGGCCC 59.993 43.478 19.63 0.00 42.40 5.80
1973 2807 2.006805 TTCACATTGTGATTGGCCCA 57.993 45.000 19.63 0.78 42.40 5.36
1974 2808 1.255882 TCACATTGTGATTGGCCCAC 58.744 50.000 15.41 1.15 37.67 4.61
1975 2809 0.967662 CACATTGTGATTGGCCCACA 59.032 50.000 11.45 9.02 42.16 4.17
1976 2810 1.551430 CACATTGTGATTGGCCCACAT 59.449 47.619 11.45 0.00 43.17 3.21
1977 2811 1.826720 ACATTGTGATTGGCCCACATC 59.173 47.619 13.24 6.89 43.17 3.06
1978 2812 1.826096 CATTGTGATTGGCCCACATCA 59.174 47.619 13.24 9.30 43.17 3.07
1979 2813 1.255882 TTGTGATTGGCCCACATCAC 58.744 50.000 23.67 23.67 43.17 3.06
1980 2814 0.611618 TGTGATTGGCCCACATCACC 60.612 55.000 25.80 14.74 41.81 4.02
1981 2815 1.378382 TGATTGGCCCACATCACCG 60.378 57.895 0.00 0.00 0.00 4.94
1982 2816 1.378514 GATTGGCCCACATCACCGT 60.379 57.895 0.00 0.00 0.00 4.83
1983 2817 1.656818 GATTGGCCCACATCACCGTG 61.657 60.000 0.00 0.00 36.61 4.94
1989 2823 4.609995 CACATCACCGTGGTACCC 57.390 61.111 10.07 0.00 33.05 3.69
1990 2824 1.674637 CACATCACCGTGGTACCCA 59.325 57.895 10.07 0.00 33.05 4.51
1991 2825 0.035598 CACATCACCGTGGTACCCAA 59.964 55.000 10.07 0.00 34.18 4.12
1992 2826 0.766131 ACATCACCGTGGTACCCAAA 59.234 50.000 10.07 0.00 34.18 3.28
1993 2827 1.271163 ACATCACCGTGGTACCCAAAG 60.271 52.381 10.07 0.00 34.18 2.77
1994 2828 1.061546 ATCACCGTGGTACCCAAAGT 58.938 50.000 10.07 0.00 34.18 2.66
1995 2829 0.838608 TCACCGTGGTACCCAAAGTT 59.161 50.000 10.07 0.00 34.18 2.66
1996 2830 0.948678 CACCGTGGTACCCAAAGTTG 59.051 55.000 10.07 0.00 34.18 3.16
1997 2831 0.820482 ACCGTGGTACCCAAAGTTGC 60.820 55.000 10.07 0.00 34.18 4.17
2005 2839 4.139038 GGTACCCAAAGTTGCTCTAACAA 58.861 43.478 0.00 0.00 41.88 2.83
2013 2847 7.970614 CCCAAAGTTGCTCTAACAAGATAATTC 59.029 37.037 0.00 0.00 41.88 2.17
2061 2895 0.901827 TGCGGCTCCATTCTTCACTA 59.098 50.000 0.00 0.00 0.00 2.74
2062 2896 1.277842 TGCGGCTCCATTCTTCACTAA 59.722 47.619 0.00 0.00 0.00 2.24
2063 2897 2.290008 TGCGGCTCCATTCTTCACTAAA 60.290 45.455 0.00 0.00 0.00 1.85
2069 2903 4.819088 GCTCCATTCTTCACTAAAGGGATC 59.181 45.833 0.00 0.00 35.54 3.36
2073 2907 5.945784 CCATTCTTCACTAAAGGGATCAACA 59.054 40.000 0.00 0.00 35.54 3.33
2122 2957 8.868916 TCAGTTGATTGTTTTGTTTAGCTTTTC 58.131 29.630 0.00 0.00 0.00 2.29
2136 2971 7.663905 TGTTTAGCTTTTCTCTATGTTGGCTTA 59.336 33.333 0.00 0.00 0.00 3.09
2150 2985 9.965824 CTATGTTGGCTTAGGTTTTAATTATGG 57.034 33.333 0.00 0.00 0.00 2.74
2152 2987 7.607250 TGTTGGCTTAGGTTTTAATTATGGTG 58.393 34.615 0.00 0.00 0.00 4.17
2153 2988 7.233757 TGTTGGCTTAGGTTTTAATTATGGTGT 59.766 33.333 0.00 0.00 0.00 4.16
2155 2990 6.153680 TGGCTTAGGTTTTAATTATGGTGTGG 59.846 38.462 0.00 0.00 0.00 4.17
2157 2992 7.310175 GGCTTAGGTTTTAATTATGGTGTGGTT 60.310 37.037 0.00 0.00 0.00 3.67
2158 2993 8.092068 GCTTAGGTTTTAATTATGGTGTGGTTT 58.908 33.333 0.00 0.00 0.00 3.27
2161 2996 8.669946 AGGTTTTAATTATGGTGTGGTTTTTG 57.330 30.769 0.00 0.00 0.00 2.44
2162 2997 8.268605 AGGTTTTAATTATGGTGTGGTTTTTGT 58.731 29.630 0.00 0.00 0.00 2.83
2163 2998 9.543783 GGTTTTAATTATGGTGTGGTTTTTGTA 57.456 29.630 0.00 0.00 0.00 2.41
2171 3021 3.499157 GGTGTGGTTTTTGTATAGCGTGA 59.501 43.478 0.00 0.00 0.00 4.35
2176 3026 6.311935 TGTGGTTTTTGTATAGCGTGATAGAC 59.688 38.462 0.00 0.00 0.00 2.59
2178 3028 7.703621 GTGGTTTTTGTATAGCGTGATAGACTA 59.296 37.037 0.00 0.00 0.00 2.59
2179 3029 8.252417 TGGTTTTTGTATAGCGTGATAGACTAA 58.748 33.333 0.00 0.00 0.00 2.24
2209 3059 8.260818 TGGAGACAATATTTGTTCTAAGAGGAG 58.739 37.037 0.00 0.00 45.52 3.69
2211 3061 9.528018 GAGACAATATTTGTTCTAAGAGGAGAG 57.472 37.037 0.00 0.00 45.52 3.20
2215 3065 9.311916 CAATATTTGTTCTAAGAGGAGAGTGAG 57.688 37.037 0.00 0.00 0.00 3.51
2220 3070 3.702792 TCTAAGAGGAGAGTGAGGTTGG 58.297 50.000 0.00 0.00 0.00 3.77
2222 3072 2.407340 AGAGGAGAGTGAGGTTGGTT 57.593 50.000 0.00 0.00 0.00 3.67
2226 3076 1.143073 GGAGAGTGAGGTTGGTTGGTT 59.857 52.381 0.00 0.00 0.00 3.67
2235 3085 4.039004 TGAGGTTGGTTGGTTCATGATTTG 59.961 41.667 0.00 0.00 0.00 2.32
2237 3087 4.057432 GGTTGGTTGGTTCATGATTTGTG 58.943 43.478 0.00 0.00 0.00 3.33
2238 3088 4.057432 GTTGGTTGGTTCATGATTTGTGG 58.943 43.478 0.00 0.00 0.00 4.17
2240 3090 3.320541 TGGTTGGTTCATGATTTGTGGTC 59.679 43.478 0.00 0.00 0.00 4.02
2245 3095 4.761739 TGGTTCATGATTTGTGGTCTCTTC 59.238 41.667 0.00 0.00 0.00 2.87
2248 3098 4.971939 TCATGATTTGTGGTCTCTTCACA 58.028 39.130 0.00 0.00 42.57 3.58
2249 3099 5.563592 TCATGATTTGTGGTCTCTTCACAT 58.436 37.500 0.00 0.00 43.53 3.21
2254 3104 5.499139 TTTGTGGTCTCTTCACATGTTTC 57.501 39.130 0.00 0.00 43.53 2.78
2257 3107 1.464997 GGTCTCTTCACATGTTTCGGC 59.535 52.381 0.00 0.00 0.00 5.54
2261 3111 3.007506 TCTCTTCACATGTTTCGGCCTTA 59.992 43.478 0.00 0.00 0.00 2.69
2269 3119 3.756933 TGTTTCGGCCTTAGTGTAAGT 57.243 42.857 0.00 0.00 33.96 2.24
2270 3120 3.656559 TGTTTCGGCCTTAGTGTAAGTC 58.343 45.455 0.00 0.00 33.96 3.01
2275 3125 2.098607 CGGCCTTAGTGTAAGTCGATGA 59.901 50.000 0.00 0.00 34.64 2.92
2278 3128 4.051922 GCCTTAGTGTAAGTCGATGATGG 58.948 47.826 0.00 0.00 33.96 3.51
2285 3135 4.451096 GTGTAAGTCGATGATGGTTGTGTT 59.549 41.667 0.00 0.00 0.00 3.32
2290 3140 2.027653 TCGATGATGGTTGTGTTAGCCA 60.028 45.455 0.00 0.00 44.33 4.75
2300 3150 1.270839 TGTGTTAGCCACTTGAGAGCC 60.271 52.381 0.00 0.00 44.81 4.70
2307 3157 3.048600 AGCCACTTGAGAGCCCATATTA 58.951 45.455 0.00 0.00 0.00 0.98
2312 3162 4.627467 CACTTGAGAGCCCATATTATACGC 59.373 45.833 0.00 0.00 0.00 4.42
2318 3168 5.238583 AGAGCCCATATTATACGCTGAAAC 58.761 41.667 2.32 0.00 0.00 2.78
2320 3170 3.124636 GCCCATATTATACGCTGAAACCG 59.875 47.826 0.00 0.00 0.00 4.44
2331 3181 2.159707 CGCTGAAACCGTAGAATTGGTG 60.160 50.000 0.00 0.00 38.82 4.17
2334 3184 1.129811 GAAACCGTAGAATTGGTGCGG 59.870 52.381 11.11 11.11 46.83 5.69
2336 3186 3.744941 CCGTAGAATTGGTGCGGTA 57.255 52.632 5.93 0.00 37.87 4.02
2338 3188 2.557317 CCGTAGAATTGGTGCGGTAAT 58.443 47.619 5.93 0.00 37.87 1.89
2352 3202 1.067425 CGGTAATGTTCAGGTCGTCCA 60.067 52.381 0.51 0.00 35.89 4.02
2354 3204 2.740447 GGTAATGTTCAGGTCGTCCAAC 59.260 50.000 0.51 0.00 35.89 3.77
2355 3205 1.892209 AATGTTCAGGTCGTCCAACC 58.108 50.000 0.51 0.00 39.80 3.77
2357 3207 0.105964 TGTTCAGGTCGTCCAACCAG 59.894 55.000 0.51 0.00 42.12 4.00
2358 3208 0.391597 GTTCAGGTCGTCCAACCAGA 59.608 55.000 0.51 0.00 42.12 3.86
2364 3215 1.605712 GGTCGTCCAACCAGACTCTTG 60.606 57.143 0.00 0.00 39.27 3.02
2368 3219 0.318441 TCCAACCAGACTCTTGCTCG 59.682 55.000 0.00 0.00 0.00 5.03
2371 3222 0.037790 AACCAGACTCTTGCTCGCTC 60.038 55.000 0.00 0.00 0.00 5.03
2385 3236 2.988800 GCTCAGCTCAGCTCCCTT 59.011 61.111 0.67 0.00 36.40 3.95
2386 3237 1.153389 GCTCAGCTCAGCTCCCTTC 60.153 63.158 0.67 0.00 36.40 3.46
2389 3240 0.543883 TCAGCTCAGCTCCCTTCACT 60.544 55.000 0.00 0.00 36.40 3.41
2394 3245 1.447489 CAGCTCCCTTCACTGCTCG 60.447 63.158 0.00 0.00 33.03 5.03
2398 3249 1.603236 CTCCCTTCACTGCTCGCTCT 61.603 60.000 0.00 0.00 0.00 4.09
2412 3263 3.667166 GCTCGCTCTTTTAGGGTTTTTCG 60.667 47.826 0.00 0.00 39.17 3.46
2415 3266 3.365969 CGCTCTTTTAGGGTTTTTCGCAT 60.366 43.478 0.00 0.00 33.54 4.73
2419 3270 2.622546 TTAGGGTTTTTCGCATTCGC 57.377 45.000 0.00 0.00 35.26 4.70
2438 3289 1.221414 CGCCATTGCTAGCTAAGGAC 58.779 55.000 21.98 12.81 34.43 3.85
2440 3291 2.808202 CGCCATTGCTAGCTAAGGACAT 60.808 50.000 21.98 0.00 34.43 3.06
2441 3292 2.551459 GCCATTGCTAGCTAAGGACATG 59.449 50.000 21.98 6.44 33.53 3.21
2443 3294 2.332063 TTGCTAGCTAAGGACATGCC 57.668 50.000 17.23 0.00 0.00 4.40
2445 3296 0.105039 GCTAGCTAAGGACATGCCGT 59.895 55.000 7.70 0.00 43.43 5.68
2447 3298 1.683917 CTAGCTAAGGACATGCCGTCT 59.316 52.381 0.00 0.00 44.70 4.18
2451 3302 1.754803 CTAAGGACATGCCGTCTACCA 59.245 52.381 0.00 0.00 44.70 3.25
2461 3312 6.174760 ACATGCCGTCTACCATTTTTACTTA 58.825 36.000 0.00 0.00 0.00 2.24
2465 3316 7.938715 TGCCGTCTACCATTTTTACTTAAAAA 58.061 30.769 8.88 8.88 45.72 1.94
2565 3416 7.908827 TTGTGAATTTCAAAATCATCCATGG 57.091 32.000 4.97 4.97 0.00 3.66
2566 3417 7.242322 TGTGAATTTCAAAATCATCCATGGA 57.758 32.000 18.88 18.88 0.00 3.41
2567 3418 7.853299 TGTGAATTTCAAAATCATCCATGGAT 58.147 30.769 22.15 22.15 34.81 3.41
2620 3471 9.628500 AGGTTTCTCAAACTAAAATAAGTCACT 57.372 29.630 0.00 0.00 41.14 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.077265 CCCTGAGCCCACCACAATT 59.923 57.895 0.00 0.00 0.00 2.32
1 2 2.765969 CCCTGAGCCCACCACAAT 59.234 61.111 0.00 0.00 0.00 2.71
2 3 3.579302 CCCCTGAGCCCACCACAA 61.579 66.667 0.00 0.00 0.00 3.33
5 6 3.658346 ATAGCCCCTGAGCCCACCA 62.658 63.158 0.00 0.00 0.00 4.17
6 7 2.386935 AATAGCCCCTGAGCCCACC 61.387 63.158 0.00 0.00 0.00 4.61
7 8 1.152881 CAATAGCCCCTGAGCCCAC 60.153 63.158 0.00 0.00 0.00 4.61
8 9 3.060614 GCAATAGCCCCTGAGCCCA 62.061 63.158 0.00 0.00 33.58 5.36
9 10 2.203408 GCAATAGCCCCTGAGCCC 60.203 66.667 0.00 0.00 33.58 5.19
10 11 2.592861 CGCAATAGCCCCTGAGCC 60.593 66.667 0.00 0.00 37.52 4.70
11 12 0.748005 TTTCGCAATAGCCCCTGAGC 60.748 55.000 0.00 0.00 37.52 4.26
12 13 1.303309 CTTTCGCAATAGCCCCTGAG 58.697 55.000 0.00 0.00 37.52 3.35
13 14 0.748005 GCTTTCGCAATAGCCCCTGA 60.748 55.000 0.00 0.00 37.52 3.86
14 15 1.031571 TGCTTTCGCAATAGCCCCTG 61.032 55.000 0.00 0.00 44.62 4.45
15 16 1.302949 TGCTTTCGCAATAGCCCCT 59.697 52.632 0.00 0.00 44.62 4.79
16 17 3.918544 TGCTTTCGCAATAGCCCC 58.081 55.556 0.00 0.00 44.62 5.80
21 22 7.415429 TTCATGAATGATTCTGCTTTCGCAATA 60.415 33.333 3.38 0.00 40.28 1.90
22 23 6.626402 TTCATGAATGATTCTGCTTTCGCAAT 60.626 34.615 3.38 0.00 40.28 3.56
23 24 5.335819 TTCATGAATGATTCTGCTTTCGCAA 60.336 36.000 3.38 0.00 40.28 4.85
24 25 3.690628 TCATGAATGATTCTGCTTTCGCA 59.309 39.130 6.73 0.00 45.60 5.10
25 26 4.282950 TCATGAATGATTCTGCTTTCGC 57.717 40.909 6.73 0.00 0.00 4.70
26 27 5.065602 TCCTTCATGAATGATTCTGCTTTCG 59.934 40.000 8.96 0.00 36.56 3.46
27 28 6.264088 GTCCTTCATGAATGATTCTGCTTTC 58.736 40.000 15.29 0.00 36.56 2.62
28 29 5.163683 CGTCCTTCATGAATGATTCTGCTTT 60.164 40.000 15.29 0.00 36.56 3.51
29 30 4.334759 CGTCCTTCATGAATGATTCTGCTT 59.665 41.667 15.29 0.00 36.56 3.91
30 31 3.875727 CGTCCTTCATGAATGATTCTGCT 59.124 43.478 15.29 0.00 36.56 4.24
31 32 3.624861 ACGTCCTTCATGAATGATTCTGC 59.375 43.478 15.29 3.21 36.56 4.26
32 33 5.808042 AACGTCCTTCATGAATGATTCTG 57.192 39.130 15.29 9.22 36.56 3.02
33 34 7.227512 GGATAAACGTCCTTCATGAATGATTCT 59.772 37.037 15.29 5.22 36.56 2.40
34 35 7.355778 GGATAAACGTCCTTCATGAATGATTC 58.644 38.462 15.29 0.00 36.56 2.52
35 36 6.263168 GGGATAAACGTCCTTCATGAATGATT 59.737 38.462 15.29 9.23 38.38 2.57
36 37 5.765182 GGGATAAACGTCCTTCATGAATGAT 59.235 40.000 15.29 3.80 38.38 2.45
37 38 5.123227 GGGATAAACGTCCTTCATGAATGA 58.877 41.667 8.96 9.05 38.38 2.57
38 39 4.881273 TGGGATAAACGTCCTTCATGAATG 59.119 41.667 8.96 6.49 38.38 2.67
39 40 5.110814 TGGGATAAACGTCCTTCATGAAT 57.889 39.130 8.96 0.00 38.38 2.57
40 41 4.561500 TGGGATAAACGTCCTTCATGAA 57.438 40.909 8.12 8.12 38.38 2.57
41 42 4.771114 ATGGGATAAACGTCCTTCATGA 57.229 40.909 0.00 0.00 38.38 3.07
42 43 5.466728 CAGTATGGGATAAACGTCCTTCATG 59.533 44.000 0.00 0.00 38.38 3.07
43 44 5.365605 TCAGTATGGGATAAACGTCCTTCAT 59.634 40.000 0.00 0.00 38.38 2.57
44 45 4.712829 TCAGTATGGGATAAACGTCCTTCA 59.287 41.667 0.00 0.00 38.38 3.02
45 46 5.272283 TCAGTATGGGATAAACGTCCTTC 57.728 43.478 0.00 0.00 38.38 3.46
46 47 5.611374 CATCAGTATGGGATAAACGTCCTT 58.389 41.667 0.00 0.00 38.38 3.36
47 48 4.503296 GCATCAGTATGGGATAAACGTCCT 60.503 45.833 0.00 0.00 38.38 3.85
48 49 3.746492 GCATCAGTATGGGATAAACGTCC 59.254 47.826 0.00 0.00 36.16 4.79
49 50 4.632153 AGCATCAGTATGGGATAAACGTC 58.368 43.478 0.00 0.00 36.16 4.34
50 51 4.100963 TGAGCATCAGTATGGGATAAACGT 59.899 41.667 0.00 0.00 42.56 3.99
51 52 4.631131 TGAGCATCAGTATGGGATAAACG 58.369 43.478 0.00 0.00 42.56 3.60
68 69 8.359642 ACAGAAAATTTTGCTAAACTATGAGCA 58.640 29.630 8.47 0.00 46.74 4.26
69 70 8.748380 ACAGAAAATTTTGCTAAACTATGAGC 57.252 30.769 8.47 0.00 39.25 4.26
77 78 9.471084 GCTAACCTAACAGAAAATTTTGCTAAA 57.529 29.630 8.47 0.00 0.00 1.85
78 79 8.856103 AGCTAACCTAACAGAAAATTTTGCTAA 58.144 29.630 8.47 0.00 0.00 3.09
79 80 8.404107 AGCTAACCTAACAGAAAATTTTGCTA 57.596 30.769 8.47 0.00 0.00 3.49
80 81 7.290110 AGCTAACCTAACAGAAAATTTTGCT 57.710 32.000 8.47 3.30 0.00 3.91
81 82 7.946655 AAGCTAACCTAACAGAAAATTTTGC 57.053 32.000 8.47 0.89 0.00 3.68
84 85 9.232473 CCTCTAAGCTAACCTAACAGAAAATTT 57.768 33.333 0.00 0.00 0.00 1.82
85 86 7.337184 GCCTCTAAGCTAACCTAACAGAAAATT 59.663 37.037 0.00 0.00 0.00 1.82
86 87 6.824196 GCCTCTAAGCTAACCTAACAGAAAAT 59.176 38.462 0.00 0.00 0.00 1.82
87 88 6.171213 GCCTCTAAGCTAACCTAACAGAAAA 58.829 40.000 0.00 0.00 0.00 2.29
88 89 5.623824 CGCCTCTAAGCTAACCTAACAGAAA 60.624 44.000 0.00 0.00 0.00 2.52
89 90 4.142227 CGCCTCTAAGCTAACCTAACAGAA 60.142 45.833 0.00 0.00 0.00 3.02
90 91 3.380637 CGCCTCTAAGCTAACCTAACAGA 59.619 47.826 0.00 0.00 0.00 3.41
91 92 3.707793 CGCCTCTAAGCTAACCTAACAG 58.292 50.000 0.00 0.00 0.00 3.16
92 93 2.159142 GCGCCTCTAAGCTAACCTAACA 60.159 50.000 0.00 0.00 0.00 2.41
93 94 2.471818 GCGCCTCTAAGCTAACCTAAC 58.528 52.381 0.00 0.00 0.00 2.34
94 95 1.411612 GGCGCCTCTAAGCTAACCTAA 59.588 52.381 22.15 0.00 0.00 2.69
95 96 1.038280 GGCGCCTCTAAGCTAACCTA 58.962 55.000 22.15 0.00 0.00 3.08
96 97 0.976073 TGGCGCCTCTAAGCTAACCT 60.976 55.000 29.70 0.00 0.00 3.50
97 98 0.106894 ATGGCGCCTCTAAGCTAACC 59.893 55.000 29.70 0.00 0.00 2.85
98 99 1.221414 CATGGCGCCTCTAAGCTAAC 58.779 55.000 29.70 0.00 0.00 2.34
99 100 0.830648 ACATGGCGCCTCTAAGCTAA 59.169 50.000 29.70 3.35 0.00 3.09
100 101 1.699730 TACATGGCGCCTCTAAGCTA 58.300 50.000 29.70 4.25 0.00 3.32
101 102 1.051812 ATACATGGCGCCTCTAAGCT 58.948 50.000 29.70 3.19 0.00 3.74
102 103 1.151668 CATACATGGCGCCTCTAAGC 58.848 55.000 29.70 0.00 0.00 3.09
103 104 1.800805 CCATACATGGCGCCTCTAAG 58.199 55.000 29.70 14.72 41.75 2.18
114 115 2.620242 GGGTTGCAAAAGCCATACATG 58.380 47.619 0.00 0.00 39.97 3.21
115 116 1.554617 GGGGTTGCAAAAGCCATACAT 59.445 47.619 0.00 0.00 41.92 2.29
116 117 0.972883 GGGGTTGCAAAAGCCATACA 59.027 50.000 0.00 0.00 41.92 2.29
117 118 0.972883 TGGGGTTGCAAAAGCCATAC 59.027 50.000 0.00 0.00 41.92 2.39
118 119 1.554160 CATGGGGTTGCAAAAGCCATA 59.446 47.619 0.00 0.00 41.92 2.74
119 120 0.325602 CATGGGGTTGCAAAAGCCAT 59.674 50.000 0.00 0.00 41.92 4.40
120 121 0.762082 TCATGGGGTTGCAAAAGCCA 60.762 50.000 0.00 0.00 41.92 4.75
121 122 0.614812 ATCATGGGGTTGCAAAAGCC 59.385 50.000 0.00 0.00 39.52 4.35
122 123 1.729284 CATCATGGGGTTGCAAAAGC 58.271 50.000 0.00 0.00 0.00 3.51
123 124 1.276989 AGCATCATGGGGTTGCAAAAG 59.723 47.619 0.00 0.00 43.26 2.27
124 125 1.350071 AGCATCATGGGGTTGCAAAA 58.650 45.000 0.00 0.00 43.26 2.44
125 126 1.275856 GAAGCATCATGGGGTTGCAAA 59.724 47.619 0.00 0.00 43.26 3.68
126 127 0.896923 GAAGCATCATGGGGTTGCAA 59.103 50.000 0.00 0.00 43.26 4.08
127 128 0.251698 TGAAGCATCATGGGGTTGCA 60.252 50.000 7.33 0.00 43.26 4.08
128 129 1.117150 ATGAAGCATCATGGGGTTGC 58.883 50.000 3.12 5.39 44.63 4.17
137 138 3.929955 TGTGGGATACATGAAGCATCA 57.070 42.857 0.00 0.00 40.57 3.07
155 156 6.994496 ATTCATCATCGAATACCACAGAATGT 59.006 34.615 0.00 0.00 41.59 2.71
156 157 6.849588 TTCATCATCGAATACCACAGAATG 57.150 37.500 0.00 0.00 46.00 2.67
157 158 9.559732 TTTATTCATCATCGAATACCACAGAAT 57.440 29.630 0.00 0.00 37.54 2.40
158 159 8.956533 TTTATTCATCATCGAATACCACAGAA 57.043 30.769 0.00 0.00 37.54 3.02
159 160 8.204160 ACTTTATTCATCATCGAATACCACAGA 58.796 33.333 0.00 0.00 37.54 3.41
160 161 8.370493 ACTTTATTCATCATCGAATACCACAG 57.630 34.615 0.00 0.00 37.54 3.66
161 162 8.731275 AACTTTATTCATCATCGAATACCACA 57.269 30.769 0.00 0.00 37.54 4.17
176 177 9.983024 TTGAGGGGTGATAAATAACTTTATTCA 57.017 29.630 0.00 0.00 37.61 2.57
204 205 6.706270 ACTCACGATCACTGTGATAAGTTTTT 59.294 34.615 22.31 9.24 44.70 1.94
205 206 6.223852 ACTCACGATCACTGTGATAAGTTTT 58.776 36.000 22.31 9.53 44.70 2.43
206 207 5.784177 ACTCACGATCACTGTGATAAGTTT 58.216 37.500 22.31 9.81 44.70 2.66
207 208 5.392767 ACTCACGATCACTGTGATAAGTT 57.607 39.130 22.31 8.90 44.70 2.66
208 209 5.392767 AACTCACGATCACTGTGATAAGT 57.607 39.130 22.31 20.58 44.70 2.24
209 210 5.635280 ACAAACTCACGATCACTGTGATAAG 59.365 40.000 22.31 20.00 44.70 1.73
257 258 0.681564 CACTCAGCGGTACCCTCTCT 60.682 60.000 6.25 0.00 0.00 3.10
258 259 0.966370 ACACTCAGCGGTACCCTCTC 60.966 60.000 6.25 0.00 0.00 3.20
267 268 5.409826 AGAAGAAGAAAAATACACTCAGCGG 59.590 40.000 0.00 0.00 0.00 5.52
284 285 7.584123 CACACTGACACGAATTAAAAGAAGAAG 59.416 37.037 0.00 0.00 0.00 2.85
288 289 5.587043 ACCACACTGACACGAATTAAAAGAA 59.413 36.000 0.00 0.00 0.00 2.52
289 290 5.120399 ACCACACTGACACGAATTAAAAGA 58.880 37.500 0.00 0.00 0.00 2.52
297 298 1.066752 CCGACCACACTGACACGAA 59.933 57.895 0.00 0.00 0.00 3.85
299 300 1.660575 GTCCGACCACACTGACACG 60.661 63.158 0.00 0.00 0.00 4.49
327 333 0.037232 GACCAGACCTTCCTGTTCGG 60.037 60.000 0.00 0.00 32.43 4.30
329 335 0.680061 ACGACCAGACCTTCCTGTTC 59.320 55.000 0.00 0.00 32.43 3.18
332 338 1.070134 TCAAACGACCAGACCTTCCTG 59.930 52.381 0.00 0.00 0.00 3.86
333 339 1.070289 GTCAAACGACCAGACCTTCCT 59.930 52.381 0.00 0.00 0.00 3.36
334 340 1.509703 GTCAAACGACCAGACCTTCC 58.490 55.000 0.00 0.00 0.00 3.46
370 402 6.480320 CCTACAGGAAGGAAGATGATTAAACG 59.520 42.308 0.00 0.00 39.15 3.60
378 410 3.133721 CACTCCCTACAGGAAGGAAGATG 59.866 52.174 0.00 0.00 46.94 2.90
381 413 1.208293 GCACTCCCTACAGGAAGGAAG 59.792 57.143 0.00 0.00 46.94 3.46
391 423 0.248949 GTCCGATTCGCACTCCCTAC 60.249 60.000 0.00 0.00 0.00 3.18
394 426 2.582498 CGTCCGATTCGCACTCCC 60.582 66.667 0.00 0.00 0.00 4.30
398 430 1.683790 CTTGTCCGTCCGATTCGCAC 61.684 60.000 0.00 0.00 0.00 5.34
411 443 0.731855 GTACAGCGACGTCCTTGTCC 60.732 60.000 19.27 8.05 35.40 4.02
427 459 5.813157 GCAGAAGAAGGGAGAAACTATGTAC 59.187 44.000 0.00 0.00 0.00 2.90
465 503 3.181497 GCATGCGTGTGGAATTATTGACT 60.181 43.478 0.00 0.00 0.00 3.41
466 504 3.108144 GCATGCGTGTGGAATTATTGAC 58.892 45.455 0.00 0.00 0.00 3.18
598 645 2.619849 CCAAGTGATGAATGGAGCCAGT 60.620 50.000 0.00 0.00 36.27 4.00
615 662 0.458370 GCCGCCTTGTTATTGCCAAG 60.458 55.000 0.00 0.00 39.19 3.61
659 712 5.503927 TGCCAAGCTAGAGATTTTTGATCT 58.496 37.500 0.00 0.00 0.00 2.75
709 765 5.320549 AGTAGCAGCAAAAATCTCCATTG 57.679 39.130 0.00 0.00 0.00 2.82
729 789 4.107051 GCGCGCATGCTCCAAAGT 62.107 61.111 29.10 0.00 39.65 2.66
846 937 1.677217 GGACTAGGCAGCTGGTTTCAG 60.677 57.143 17.12 0.00 43.64 3.02
861 952 4.024893 CGGTTTAATACGACTAGCGGACTA 60.025 45.833 10.53 0.00 46.49 2.59
895 996 1.789523 TTATAGGCTTGCGAGGAGGT 58.210 50.000 2.37 0.00 0.00 3.85
918 1019 3.578286 TGTGGTGCATGGAGCCCA 61.578 61.111 14.15 5.64 44.83 5.36
922 1024 1.303799 GCTGAGTGTGGTGCATGGAG 61.304 60.000 0.00 0.00 0.00 3.86
1124 1286 2.750888 GCGTTGATGGAGTTCCCGC 61.751 63.158 3.64 3.64 37.93 6.13
1196 1395 1.872388 TATAATTGCTTGCGCGGCTA 58.128 45.000 22.08 16.66 39.65 3.93
1198 1397 1.978782 GAATATAATTGCTTGCGCGGC 59.021 47.619 16.51 16.51 39.65 6.53
1199 1398 3.266541 TGAATATAATTGCTTGCGCGG 57.733 42.857 8.83 0.00 39.65 6.46
1200 1399 4.465921 TGATGAATATAATTGCTTGCGCG 58.534 39.130 0.00 0.00 39.65 6.86
1201 1400 5.117592 GGTTGATGAATATAATTGCTTGCGC 59.882 40.000 0.00 0.00 0.00 6.09
1203 1402 6.208644 ACGGTTGATGAATATAATTGCTTGC 58.791 36.000 0.00 0.00 0.00 4.01
1204 1403 7.642669 AGACGGTTGATGAATATAATTGCTTG 58.357 34.615 0.00 0.00 0.00 4.01
1228 1876 4.213482 AGAAGCAAAGCAAACGTAAGGTAG 59.787 41.667 0.00 0.00 46.39 3.18
1229 1877 4.131596 AGAAGCAAAGCAAACGTAAGGTA 58.868 39.130 0.00 0.00 46.39 3.08
1230 1878 2.949644 AGAAGCAAAGCAAACGTAAGGT 59.050 40.909 0.00 0.00 46.39 3.50
1231 1879 3.626028 AGAAGCAAAGCAAACGTAAGG 57.374 42.857 0.00 0.00 46.39 2.69
1269 1934 3.434319 CACACCATCTGCACGGCC 61.434 66.667 0.00 0.00 0.00 6.13
1482 2147 1.271325 CCACTGCCAGTGTCAATACCA 60.271 52.381 22.54 0.00 44.50 3.25
1551 2228 1.602311 CCACTATCTGGCCAATGAGC 58.398 55.000 7.01 0.00 31.36 4.26
1633 2310 1.662446 CGACACGCCGGTTGTAGTT 60.662 57.895 10.46 0.00 0.00 2.24
1665 2343 8.357402 GGAACGCATTTATTTATTTAGGTCCAT 58.643 33.333 0.00 0.00 0.00 3.41
1666 2344 7.339721 TGGAACGCATTTATTTATTTAGGTCCA 59.660 33.333 0.00 0.00 0.00 4.02
1689 2379 2.633692 TGGGTACATTGGTAGGTTGGA 58.366 47.619 0.00 0.00 0.00 3.53
1943 2777 8.449397 CCAATCACAATGTGAAAAGAAACAAAA 58.551 29.630 20.64 0.00 45.96 2.44
1947 2781 5.050159 GGCCAATCACAATGTGAAAAGAAAC 60.050 40.000 20.64 6.38 45.96 2.78
1948 2782 5.055812 GGCCAATCACAATGTGAAAAGAAA 58.944 37.500 20.64 0.00 45.96 2.52
1956 2790 0.967662 TGTGGGCCAATCACAATGTG 59.032 50.000 8.40 7.12 41.50 3.21
1980 2814 5.853552 GTTAGAGCAACTTTGGGTACCACG 61.854 50.000 15.35 0.75 46.79 4.94
1981 2815 3.501062 GTTAGAGCAACTTTGGGTACCAC 59.499 47.826 15.35 3.71 46.79 4.16
1982 2816 3.746940 GTTAGAGCAACTTTGGGTACCA 58.253 45.455 15.35 0.00 45.98 3.25
1983 2817 3.746940 TGTTAGAGCAACTTTGGGTACC 58.253 45.455 2.17 2.17 43.61 3.34
1984 2818 5.061179 TCTTGTTAGAGCAACTTTGGGTAC 58.939 41.667 0.00 0.00 38.05 3.34
1985 2819 5.298989 TCTTGTTAGAGCAACTTTGGGTA 57.701 39.130 0.00 0.00 38.05 3.69
1986 2820 4.164843 TCTTGTTAGAGCAACTTTGGGT 57.835 40.909 0.00 0.00 38.05 4.51
1987 2821 6.817765 TTATCTTGTTAGAGCAACTTTGGG 57.182 37.500 0.00 0.00 38.05 4.12
1988 2822 7.693951 CGAATTATCTTGTTAGAGCAACTTTGG 59.306 37.037 0.00 0.00 38.05 3.28
1989 2823 8.230486 ACGAATTATCTTGTTAGAGCAACTTTG 58.770 33.333 0.00 0.00 38.05 2.77
1990 2824 8.230486 CACGAATTATCTTGTTAGAGCAACTTT 58.770 33.333 0.00 0.00 38.05 2.66
1991 2825 7.387948 ACACGAATTATCTTGTTAGAGCAACTT 59.612 33.333 0.00 0.00 34.67 2.66
1992 2826 6.874134 ACACGAATTATCTTGTTAGAGCAACT 59.126 34.615 0.00 0.00 34.67 3.16
1993 2827 7.061752 ACACGAATTATCTTGTTAGAGCAAC 57.938 36.000 0.00 0.00 34.67 4.17
1994 2828 8.942338 ATACACGAATTATCTTGTTAGAGCAA 57.058 30.769 0.00 0.00 38.76 3.91
1995 2829 8.942338 AATACACGAATTATCTTGTTAGAGCA 57.058 30.769 0.00 0.00 38.76 4.26
2005 2839 8.638629 AGCCTCTAGTAATACACGAATTATCT 57.361 34.615 0.00 0.00 0.00 1.98
2013 2847 3.004524 GGGTGAGCCTCTAGTAATACACG 59.995 52.174 0.00 0.00 34.45 4.49
2048 2882 6.180472 GTTGATCCCTTTAGTGAAGAATGGA 58.820 40.000 0.00 0.00 37.57 3.41
2049 2883 5.945784 TGTTGATCCCTTTAGTGAAGAATGG 59.054 40.000 0.00 0.00 37.57 3.16
2098 2933 9.087424 GAGAAAAGCTAAACAAAACAATCAACT 57.913 29.630 0.00 0.00 0.00 3.16
2115 2950 5.189180 CCTAAGCCAACATAGAGAAAAGCT 58.811 41.667 0.00 0.00 0.00 3.74
2127 2962 7.233757 ACACCATAATTAAAACCTAAGCCAACA 59.766 33.333 0.00 0.00 0.00 3.33
2136 2971 8.268605 ACAAAAACCACACCATAATTAAAACCT 58.731 29.630 0.00 0.00 0.00 3.50
2150 2985 4.735662 TCACGCTATACAAAAACCACAC 57.264 40.909 0.00 0.00 0.00 3.82
2152 2987 6.534079 AGTCTATCACGCTATACAAAAACCAC 59.466 38.462 0.00 0.00 0.00 4.16
2153 2988 6.636705 AGTCTATCACGCTATACAAAAACCA 58.363 36.000 0.00 0.00 0.00 3.67
2157 2992 9.811995 AACATTAGTCTATCACGCTATACAAAA 57.188 29.630 0.00 0.00 0.00 2.44
2158 2993 9.244799 CAACATTAGTCTATCACGCTATACAAA 57.755 33.333 0.00 0.00 0.00 2.83
2160 2995 7.229907 TCCAACATTAGTCTATCACGCTATACA 59.770 37.037 0.00 0.00 0.00 2.29
2161 2996 7.591165 TCCAACATTAGTCTATCACGCTATAC 58.409 38.462 0.00 0.00 0.00 1.47
2162 2997 7.664318 TCTCCAACATTAGTCTATCACGCTATA 59.336 37.037 0.00 0.00 0.00 1.31
2163 2998 6.490381 TCTCCAACATTAGTCTATCACGCTAT 59.510 38.462 0.00 0.00 0.00 2.97
2179 3029 9.739276 TCTTAGAACAAATATTGTCTCCAACAT 57.261 29.630 0.00 0.00 44.59 2.71
2191 3041 7.621683 ACCTCACTCTCCTCTTAGAACAAATAT 59.378 37.037 0.00 0.00 0.00 1.28
2192 3042 6.954684 ACCTCACTCTCCTCTTAGAACAAATA 59.045 38.462 0.00 0.00 0.00 1.40
2193 3043 5.782845 ACCTCACTCTCCTCTTAGAACAAAT 59.217 40.000 0.00 0.00 0.00 2.32
2199 3049 3.076182 ACCAACCTCACTCTCCTCTTAGA 59.924 47.826 0.00 0.00 0.00 2.10
2202 3052 2.370189 CAACCAACCTCACTCTCCTCTT 59.630 50.000 0.00 0.00 0.00 2.85
2209 3059 2.341846 TGAACCAACCAACCTCACTC 57.658 50.000 0.00 0.00 0.00 3.51
2211 3061 2.582052 TCATGAACCAACCAACCTCAC 58.418 47.619 0.00 0.00 0.00 3.51
2215 3065 4.057432 CACAAATCATGAACCAACCAACC 58.943 43.478 0.00 0.00 0.00 3.77
2220 3070 4.520492 AGAGACCACAAATCATGAACCAAC 59.480 41.667 0.00 0.00 0.00 3.77
2222 3072 4.371624 AGAGACCACAAATCATGAACCA 57.628 40.909 0.00 0.00 0.00 3.67
2226 3076 4.971939 TGTGAAGAGACCACAAATCATGA 58.028 39.130 0.00 0.00 41.07 3.07
2235 3085 2.480419 CCGAAACATGTGAAGAGACCAC 59.520 50.000 0.00 0.00 35.23 4.16
2237 3087 1.464997 GCCGAAACATGTGAAGAGACC 59.535 52.381 0.00 0.00 0.00 3.85
2238 3088 1.464997 GGCCGAAACATGTGAAGAGAC 59.535 52.381 0.00 0.00 0.00 3.36
2240 3090 1.813513 AGGCCGAAACATGTGAAGAG 58.186 50.000 0.00 0.00 0.00 2.85
2245 3095 2.151202 ACACTAAGGCCGAAACATGTG 58.849 47.619 0.00 3.91 0.00 3.21
2248 3098 4.251268 GACTTACACTAAGGCCGAAACAT 58.749 43.478 0.00 0.00 37.87 2.71
2249 3099 3.656559 GACTTACACTAAGGCCGAAACA 58.343 45.455 0.00 0.00 37.87 2.83
2254 3104 2.098607 TCATCGACTTACACTAAGGCCG 59.901 50.000 0.00 0.00 40.82 6.13
2257 3107 5.263968 ACCATCATCGACTTACACTAAGG 57.736 43.478 0.00 0.00 40.08 2.69
2261 3111 4.245660 CACAACCATCATCGACTTACACT 58.754 43.478 0.00 0.00 0.00 3.55
2269 3119 2.027653 TGGCTAACACAACCATCATCGA 60.028 45.455 0.00 0.00 0.00 3.59
2270 3120 2.355197 TGGCTAACACAACCATCATCG 58.645 47.619 0.00 0.00 0.00 3.84
2285 3135 2.174685 TATGGGCTCTCAAGTGGCTA 57.825 50.000 5.75 0.56 34.96 3.93
2290 3140 4.528596 AGCGTATAATATGGGCTCTCAAGT 59.471 41.667 0.00 0.00 0.00 3.16
2312 3162 2.159707 CGCACCAATTCTACGGTTTCAG 60.160 50.000 0.00 0.00 31.41 3.02
2320 3170 4.393680 TGAACATTACCGCACCAATTCTAC 59.606 41.667 0.00 0.00 0.00 2.59
2331 3181 0.997196 GACGACCTGAACATTACCGC 59.003 55.000 0.00 0.00 0.00 5.68
2334 3184 2.740447 GGTTGGACGACCTGAACATTAC 59.260 50.000 5.33 0.00 36.73 1.89
2336 3186 1.142060 TGGTTGGACGACCTGAACATT 59.858 47.619 9.98 0.00 40.47 2.71
2338 3188 0.105964 CTGGTTGGACGACCTGAACA 59.894 55.000 9.98 2.18 40.06 3.18
2352 3202 0.037790 GAGCGAGCAAGAGTCTGGTT 60.038 55.000 0.00 0.00 0.00 3.67
2354 3204 0.458197 CTGAGCGAGCAAGAGTCTGG 60.458 60.000 0.00 0.00 0.00 3.86
2355 3205 3.033114 CTGAGCGAGCAAGAGTCTG 57.967 57.895 0.00 0.00 0.00 3.51
2368 3219 1.153389 GAAGGGAGCTGAGCTGAGC 60.153 63.158 18.32 18.32 39.88 4.26
2371 3222 0.391395 CAGTGAAGGGAGCTGAGCTG 60.391 60.000 13.71 0.00 39.88 4.24
2385 3236 1.066858 CCCTAAAAGAGCGAGCAGTGA 60.067 52.381 0.00 0.00 0.00 3.41
2386 3237 1.338200 ACCCTAAAAGAGCGAGCAGTG 60.338 52.381 0.00 0.00 0.00 3.66
2389 3240 2.561478 AAACCCTAAAAGAGCGAGCA 57.439 45.000 0.00 0.00 0.00 4.26
2394 3245 3.636282 TGCGAAAAACCCTAAAAGAGC 57.364 42.857 0.00 0.00 0.00 4.09
2398 3249 3.310246 GCGAATGCGAAAAACCCTAAAA 58.690 40.909 0.00 0.00 40.82 1.52
2421 3272 2.551459 GCATGTCCTTAGCTAGCAATGG 59.449 50.000 18.83 14.78 0.00 3.16
2422 3273 2.551459 GGCATGTCCTTAGCTAGCAATG 59.449 50.000 18.83 9.40 0.00 2.82
2423 3274 2.808202 CGGCATGTCCTTAGCTAGCAAT 60.808 50.000 18.83 0.00 0.00 3.56
2424 3275 1.473257 CGGCATGTCCTTAGCTAGCAA 60.473 52.381 18.83 8.36 0.00 3.91
2438 3289 5.560966 AAGTAAAAATGGTAGACGGCATG 57.439 39.130 0.00 0.00 0.00 4.06
2440 3291 7.507733 TTTTAAGTAAAAATGGTAGACGGCA 57.492 32.000 0.00 0.00 32.05 5.69
2441 3292 8.077991 ACTTTTTAAGTAAAAATGGTAGACGGC 58.922 33.333 8.92 0.00 42.30 5.68
2539 3390 8.952278 CCATGGATGATTTTGAAATTCACAAAT 58.048 29.630 5.56 12.47 37.15 2.32
2540 3391 8.155510 TCCATGGATGATTTTGAAATTCACAAA 58.844 29.630 11.44 0.93 35.81 2.83
2551 3402 7.925043 TTTTGGAAATCCATGGATGATTTTG 57.075 32.000 27.97 0.00 46.97 2.44
2559 3410 9.360901 TCGAATATATTTTTGGAAATCCATGGA 57.639 29.630 18.88 18.88 46.97 3.41
2560 3411 9.979578 TTCGAATATATTTTTGGAAATCCATGG 57.020 29.630 4.97 4.97 46.97 3.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.